Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1855
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 154734
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
File 1 of 2
Found at i:1053 original size:27 final size:27
Alignment explanation
Indices: 1023--1085 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 27
1013 TTTTAAAAGA
*
1023 AACTAATCAT-CTTCTTATTTGAAAA-TT
1 AACTAATCATAC-T-TTATCTGAAAAGTT
*
1050 AACTATTCATACTTTATCTGAAAAGTT
1 AACTAATCATACTTTATCTGAAAAGTT
1077 ACACTAATC
1 A-ACTAATC
1086 TTTTTAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
26 10 0.33
27 13 0.43
28 7 0.23
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.40
Consensus pattern (27 bp):
AACTAATCATACTTTATCTGAAAAGTT
Found at i:1784 original size:28 final size:27
Alignment explanation
Indices: 1726--1785 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 27
1716 AAAATCTAAT
*
1726 TATACAAAATAATTATTATAAAAATTA
1 TATACAAAATAATTATGATAAAAATTA
*
1753 TATACATATATAATTATAGATAAAAATGTA
1 TATACA-AAATAATTAT-GATAAAAAT-TA
1783 TAT
1 TAT
1786 TTCATTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 6 0.21
28 9 0.32
29 8 0.29
30 5 0.18
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.38
Consensus pattern (27 bp):
TATACAAAATAATTATGATAAAAATTA
Found at i:3364 original size:2 final size:2
Alignment explanation
Indices: 3357--3399 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
3347 TTCTTGCATT
*
3357 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC CC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
3399 T
1 T
3400 TTTTCCCGGG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:6481 original size:25 final size:25
Alignment explanation
Indices: 6435--6485 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
6425 TATTTATAAA
* *
6435 TAATGATTAAATATGTATTAAAAAG
1 TAATGATTAAAAATGTAATAAAAAG
6460 TAATGAATTAAAAAT-TAATAAAAAG
1 TAATG-ATTAAAAATGTAATAAAAAG
6485 T
1 T
6486 GAGATATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (25 bp):
TAATGATTAAAAATGTAATAAAAAG
Found at i:6630 original size:2 final size:2
Alignment explanation
Indices: 6623--6654 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
6613 TCATTTTCTA
6623 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6655 TTGCAAACCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7450 original size:12 final size:12
Alignment explanation
Indices: 7433--7461 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
7423 TTAAAAATTG
7433 CATTTTTGATAA
1 CATTTTTGATAA
7445 CATTTTTGATAA
1 CATTTTTGATAA
7457 CATTT
1 CATTT
7462 ATCTGGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (12 bp):
CATTTTTGATAA
Found at i:7822 original size:15 final size:15
Alignment explanation
Indices: 7802--7834 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
7792 TCTATATTCA
7802 TATAGGTGGAATCCT
1 TATAGGTGGAATCCT
7817 TATAGGTGGAATCCT
1 TATAGGTGGAATCCT
7832 TAT
1 TAT
7835 GATAATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.36
Consensus pattern (15 bp):
TATAGGTGGAATCCT
Found at i:9422 original size:19 final size:19
Alignment explanation
Indices: 9395--9451 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
9385 TGTATCGATA
9395 CATTATATCGATACATGAT
1 CATTATATCGATACATGAT
*
9414 CATTGTATCGATACATGGAT
1 CATTATATCGATACAT-GAT
* *
9434 AATTATATCAATACATGA
1 CATTATATCGATACATGA
9452 AACTGGCAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (19 bp):
CATTATATCGATACATGAT
Found at i:9425 original size:32 final size:33
Alignment explanation
Indices: 9367--9429 Score: 101
Period size: 32 Copynumber: 1.9 Consensus size: 33
9357 CACCCAGATG
* *
9367 TATCGATACATTATGCTTTGTATCGATACATTA
1 TATCGATACATGATGCATTGTATCGATACATTA
9400 TATCGATACATGAT-CATTGTATCGATACAT
1 TATCGATACATGATGCATTGTATCGATACAT
9430 GGATAATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 15 0.54
33 13 0.46
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.40
Consensus pattern (33 bp):
TATCGATACATGATGCATTGTATCGATACATTA
Found at i:9447 original size:20 final size:20
Alignment explanation
Indices: 9391--9450 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
9381 GCTTTGTATC
9391 GATACATTATATCGATACAT-
1 GATA-ATTATATCGATACATG
* *
9411 GATCATTGTATCGATACATG
1 GATAATTATATCGATACATG
*
9431 GATAATTATATCAATACATG
1 GATAATTATATCGATACATG
9451 AAACTGGCAG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
19 14 0.41
20 20 0.59
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (20 bp):
GATAATTATATCGATACATG
Found at i:11134 original size:18 final size:18
Alignment explanation
Indices: 11111--11145 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
11101 AGTCAACCAT
11111 CAATGATGATGAAGATGA
1 CAATGATGATGAAGATGA
*
11129 CAATGATGATGATGATG
1 CAATGATGATGAAGATG
11146 GTGACTTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.06, G:0.29, T:0.26
Consensus pattern (18 bp):
CAATGATGATGAAGATGA
Found at i:16573 original size:13 final size:13
Alignment explanation
Indices: 16555--16585 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
16545 ACATTTCTTC
16555 ATGTATCGATACA
1 ATGTATCGATACA
16568 ATGTATCGATACA
1 ATGTATCGATACA
*
16581 TTGTA
1 ATGTA
16586 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:16575 original size:33 final size:33
Alignment explanation
Indices: 16538--16601 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 33
16528 ACAAGCTATT
16538 TATCGATACATT-T-CTTCATGTATCGATACAATG
1 TATCGATACATTGTAC--CATGTATCGATACAATG
16571 TATCGATACATTGTACCATGTATCGATACAA
1 TATCGATACATTGTACCATGTATCGATACAA
16602 ATAGTGATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 27 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (33 bp):
TATCGATACATTGTACCATGTATCGATACAATG
Found at i:16675 original size:19 final size:19
Alignment explanation
Indices: 16631--16686 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 19
16621 TGCCAGTTTT
**
16631 ATGTATCGATACAATTTGTCC
1 ATGTATCGATAC-A-TTGAAC
16652 ATGTATCGATACATTGAAC
1 ATGTATCGATACATTGAAC
16671 ATGTATCGATACATTG
1 ATGTATCGATACATTG
16687 TATCGATACA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 20 0.61
20 1 0.03
21 12 0.36
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGTATCGATACATTGAAC
Found at i:16690 original size:13 final size:13
Alignment explanation
Indices: 16672--16696 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16662 ACATTGAACA
16672 TGTATCGATACAT
1 TGTATCGATACAT
16685 TGTATCGATACA
1 TGTATCGATACA
16697 AGGCAGCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:16712 original size:33 final size:32
Alignment explanation
Indices: 16653--16714 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
16643 AATTTGTCCA
**
16653 TGTATCGATACATTGAACATGTATCGATACAT
1 TGTATCGATACAAGGAACATGTATCGATACAT
*
16685 TGTATCGATACAAGGCAGCATGTATCGATA
1 TGTATCGATACAAGG-AACATGTATCGATA
16715 TATCTGGGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 13 0.50
33 13 0.50
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (32 bp):
TGTATCGATACAAGGAACATGTATCGATACAT
Found at i:17991 original size:21 final size:21
Alignment explanation
Indices: 17967--18009 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
17957 AAAAGTTACC
17967 TTTTTTCATCCAAAAAATGCA
1 TTTTTTCATCCAAAAAATGCA
**
17988 TTTTTTCATCCAACCAATGCA
1 TTTTTTCATCCAAAAAATGCA
18009 T
1 T
18010 CATTTCATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.40
Consensus pattern (21 bp):
TTTTTTCATCCAAAAAATGCA
Found at i:18015 original size:21 final size:21
Alignment explanation
Indices: 17970--18022 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
17960 AGTTACCTTT
**
17970 TTTCATCCAAAAAATGCATTT
1 TTTCATCCAAAAAATGCATCA
**
17991 TTTCATCCAACCAATGCATCA
1 TTTCATCCAAAAAATGCATCA
*
18012 TTTCATTCAAA
1 TTTCATCCAAA
18023 GATACATTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.36, C:0.25, G:0.04, T:0.36
Consensus pattern (21 bp):
TTTCATCCAAAAAATGCATCA
Found at i:18458 original size:23 final size:22
Alignment explanation
Indices: 18419--18461 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
18409 GAATTGAAAA
18419 TTTTAAATTTTAAAATTAAATT
1 TTTTAAATTTTAAAATTAAATT
*
18441 TTTTATAATTTTATAATTAAA
1 TTTTA-AATTTTAAAATTAAA
18462 AAATTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTTAAATTTTAAAATTAAATT
Found at i:19822 original size:20 final size:21
Alignment explanation
Indices: 19783--19826 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
19773 TTAAGTATAG
19783 ATGTTTTTCAAGCATAAAAATA
1 ATGTTTTTCAAG-ATAAAAATA
19805 ATGTTTTTCAAG-TAAAAATA
1 ATGTTTTTCAAGATAAAAATA
19825 AT
1 AT
19827 TCAAAGTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 10 0.45
22 12 0.55
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (21 bp):
ATGTTTTTCAAGATAAAAATA
Found at i:19942 original size:32 final size:33
Alignment explanation
Indices: 19882--19946 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
19872 AACCCTAGAA
*
19882 TGTATCGATACATATTGCTTAGTGTCGATACAT
1 TGTATCGATACATATTGCTTAGTATCGATACAT
* *
19915 TGTATTGATACATGTT-CTTAGTATCGATACAT
1 TGTATCGATACATATTGCTTAGTATCGATACAT
19947 ATCGAATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATATTGCTTAGTATCGATACAT
Found at i:20573 original size:31 final size:30
Alignment explanation
Indices: 20520--20578 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
20510 ATAGGGAGAA
20520 AGGTTTTATCTTATCCCGTGAAAAGATAAAG
1 AGGTTTTATCTTATCCCGTG-AAAGATAAAG
* *
20551 AGGTTTCTATCTTA-GCCTTGAAAGATAA
1 AGGTTT-TATCTTATCCCGTGAAAGATAA
20579 TGTTGTAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.32
31 10 0.40
32 7 0.28
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.34
Consensus pattern (30 bp):
AGGTTTTATCTTATCCCGTGAAAGATAAAG
Found at i:22816 original size:18 final size:18
Alignment explanation
Indices: 22793--22827 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
22783 AGTCAACCAT
22793 CAATGATGATGAAGATGA
1 CAATGATGATGAAGATGA
*
22811 CAATGATGATGATGATG
1 CAATGATGATGAAGATG
22828 GTGACTTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.06, G:0.29, T:0.26
Consensus pattern (18 bp):
CAATGATGATGAAGATGA
Found at i:27426 original size:20 final size:20
Alignment explanation
Indices: 27387--27432 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
27377 TTTCTAAATT
27387 TCTT-ATTTTTCACTTCAAAA
1 TCTTCATTTTTCAC-TCAAAA
27407 TACTTCATTTTTCA-TCAAAA
1 T-CTTCATTTTTCACTCAAAA
27427 TCTTCA
1 TCTTCA
27433 ACAAAAACGG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 5 0.21
20 8 0.33
21 3 0.12
22 8 0.33
ACGTcount: A:0.30, C:0.22, G:0.00, T:0.48
Consensus pattern (20 bp):
TCTTCATTTTTCACTCAAAA
Found at i:32609 original size:49 final size:49
Alignment explanation
Indices: 32462--32631 Score: 226
Period size: 49 Copynumber: 3.5 Consensus size: 49
32452 ATGATTTGTA
32462 GCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATC
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
* * * *
32505 GCTAGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTC
1 GCTGGCCTTGAATCAGCACATTGGCACC--T-TCATCTTTAAGTCCAATATC
*
32557 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATACC
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
32606 GCTGGCCTTGAATCAGCACATTGGCA
1 GCTGGCCTTGAATCAGCACATTGGCA
32632 TTCTTCTCTT
Statistics
Matches: 109, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
43 23 0.21
49 44 0.40
50 2 0.02
52 40 0.37
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (49 bp):
GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
Found at i:32672 original size:52 final size:49
Alignment explanation
Indices: 32462--32680 Score: 211
Period size: 52 Copynumber: 4.5 Consensus size: 49
32452 ATGATTTGTA
32462 GCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAAT-ATC
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGA-C
* * * *
32505 GCTAGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTC
1 GCTGGCCTTGAATCAGCACATTGGCACC--T-TCATCTTTAAGTCCAATGAC
32557 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAAT-ACC
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGA-C
* * *
32606 GCTGGCCTTGAATCAGCACATTGGCATTCTTCTCTTCTTTAAGTCTAATGAC
1 GCTGGCCTTGAATCAGCACATTGGCA--CCT-TCATCTTTAAGTCCAATGAC
* * * *
32658 GCTGACCGTAAATCAGCGCATTG
1 GCTGGCCTTGAATCAGCACATTG
32681 ACATCCTTTT
Statistics
Matches: 146, Mismatches: 15, Indels: 21
0.80 0.08 0.12
Matches are distributed among these distances:
43 23 0.16
49 44 0.30
50 2 0.01
51 2 0.01
52 74 0.51
53 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (49 bp):
GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGAC
Found at i:33374 original size:13 final size:13
Alignment explanation
Indices: 33356--33380 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33346 TTCAACGATT
33356 TGTATCGATACAA
1 TGTATCGATACAA
33369 TGTATCGATACA
1 TGTATCGATACA
33381 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:33393 original size:19 final size:19
Alignment explanation
Indices: 33369--33418 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
33359 ATCGATACAA
33369 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
*
33388 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGTGT
33407 TGTATCGATACA
1 TGTATCGATACA
33419 ATGTATCGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:36638 original size:13 final size:13
Alignment explanation
Indices: 36620--36679 Score: 60
Period size: 13 Copynumber: 5.1 Consensus size: 13
36610 TACATTGAAC
36620 ATGTATCGATACA
1 ATGTATCGATACA
36633 ATGTATCGATACA
1 ATGTATCGATACA
* *
36646 A-G--GC-A-GC-
1 ATGTATCGATACA
36653 ATGTATCGATACA
1 ATGTATCGATACA
36666 ATGTATCGATACA
1 ATGTATCGATACA
36679 A
1 A
36680 GGCAGCATGT
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
7 1 0.03
8 2 0.05
9 1 0.03
10 2 0.05
11 1 0.03
12 2 0.05
13 28 0.76
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:36657 original size:33 final size:33
Alignment explanation
Indices: 36619--36698 Score: 160
Period size: 33 Copynumber: 2.4 Consensus size: 33
36609 ATACATTGAA
36619 CATGTATCGATACAATGTATCGATACAAGGCAG
1 CATGTATCGATACAATGTATCGATACAAGGCAG
36652 CATGTATCGATACAATGTATCGATACAAGGCAG
1 CATGTATCGATACAATGTATCGATACAAGGCAG
36685 CATGTATCGATACA
1 CATGTATCGATACA
36699 TCTGGGTGTG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 47 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (33 bp):
CATGTATCGATACAATGTATCGATACAAGGCAG
Found at i:36658 original size:20 final size:20
Alignment explanation
Indices: 36633--36698 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
36623 TATCGATACA
36633 ATGTATCGATACAAGGCAGC
1 ATGTATCGATACAAGGCAGC
36653 ATGTATCGAT---A--CA--
1 ATGTATCGATACAAGGCAGC
36666 ATGTATCGATACAAGGCAGC
1 ATGTATCGATACAAGGCAGC
36686 ATGTATCGATACA
1 ATGTATCGATACA
36699 TCTGGGTGTG
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 10 0.26
15 2 0.05
16 1 0.03
17 1 0.03
18 2 0.05
20 23 0.59
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.24
Consensus pattern (20 bp):
ATGTATCGATACAAGGCAGC
Found at i:39131 original size:52 final size:52
Alignment explanation
Indices: 39061--39181 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
39051 GAAAATTTAT
*
39061 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
* *
39113 CTGCATGTATAGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
39165 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
39182 AAGATCAGTG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:39194 original size:52 final size:51
Alignment explanation
Indices: 39061--39201 Score: 203
Period size: 52 Copynumber: 2.7 Consensus size: 51
39051 GAAAATTTAT
39061 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* * *
39113 CTGCATGTATAGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
39165 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
39202 ATGTATCGAT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 2 0.03
52 78 0.98
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:39208 original size:13 final size:13
Alignment explanation
Indices: 39190--39214 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
39180 CAAAGATCAG
39190 TGTATCGATACAA
1 TGTATCGATACAA
39203 TGTATCGATACA
1 TGTATCGATACA
39215 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:39295 original size:13 final size:13
Alignment explanation
Indices: 39277--39301 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
39267 CAAAAACAAA
39277 TGTATCGATACAT
1 TGTATCGATACAT
39290 TGTATCGATACA
1 TGTATCGATACA
39302 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:41405 original size:13 final size:13
Alignment explanation
Indices: 41381--41421 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
41371 AATAGTACTT
*
41381 AATGTATTGATAC
1 AATGTATCGATAC
*
41394 ATTGTATCGATAC
1 AATGTATCGATAC
41407 AATGTATCGATAC
1 AATGTATCGATAC
41420 AA
1 AA
41422 GGAATGTTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:47605 original size:13 final size:13
Alignment explanation
Indices: 47587--47650 Score: 68
Period size: 13 Copynumber: 5.4 Consensus size: 13
47577 ACATTTCTTC
47587 ATGTATCGATACA
1 ATGTATCGATACA
47600 ATGTATCGATAC-
1 ATGTATCGATACA
*
47612 A--T-T-G-TACC
1 ATGTATCGATACA
47620 ATGTATCGATACA
1 ATGTATCGATACA
47633 ATGTATCGATACA
1 ATGTATCGATACA
*
47646 TTGTA
1 ATGTA
47651 CCATGTATCG
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
7 3 0.07
8 2 0.05
9 1 0.02
10 2 0.05
11 1 0.02
12 2 0.05
13 32 0.74
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:47607 original size:33 final size:33
Alignment explanation
Indices: 47570--47666 Score: 162
Period size: 33 Copynumber: 2.9 Consensus size: 33
47560 ACAAGCTATT
47570 TATCGATACATT-T-CTTCATGTATCGATACAATG
1 TATCGATACATTGTAC--CATGTATCGATACAATG
47603 TATCGATACATTGTACCATGTATCGATACAATG
1 TATCGATACATTGTACCATGTATCGATACAATG
47636 TATCGATACATTGTACCATGTATCGATACAA
1 TATCGATACATTGTACCATGTATCGATACAA
47667 ATAGTGATAG
Statistics
Matches: 62, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
33 60 0.97
34 1 0.02
35 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (33 bp):
TATCGATACATTGTACCATGTATCGATACAATG
Found at i:47625 original size:20 final size:20
Alignment explanation
Indices: 47600--47665 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
47590 TATCGATACA
47600 ATGTATCGATACATTGTACC
1 ATGTATCGATACATTGTACC
47620 ATGTATCGATAC-----A--
1 ATGTATCGATACATTGTACC
47633 ATGTATCGATACATTGTACC
1 ATGTATCGATACATTGTACC
47653 ATGTATCGATACA
1 ATGTATCGATACA
47666 AATAGTGATA
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 12 0.31
15 1 0.03
18 1 0.03
20 25 0.64
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTGTACC
Found at i:47740 original size:19 final size:19
Alignment explanation
Indices: 47696--47751 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 19
47686 TGCCAGTTTT
**
47696 ATGTATCGATACAATTTGTCC
1 ATGTATCGATAC-A-TTGAAC
47717 ATGTATCGATACATTGAAC
1 ATGTATCGATACATTGAAC
47736 ATGTATCGATACATTG
1 ATGTATCGATACATTG
47752 TATCGATACA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 20 0.61
20 1 0.03
21 12 0.36
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGTATCGATACATTGAAC
Found at i:47755 original size:13 final size:13
Alignment explanation
Indices: 47737--47761 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47727 ACATTGAACA
47737 TGTATCGATACAT
1 TGTATCGATACAT
47750 TGTATCGATACA
1 TGTATCGATACA
47762 AGGCAGCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:47777 original size:33 final size:32
Alignment explanation
Indices: 47718--47779 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
47708 AATTTGTCCA
**
47718 TGTATCGATACATTGAACATGTATCGATACAT
1 TGTATCGATACAAGGAACATGTATCGATACAT
*
47750 TGTATCGATACAAGGCAGCATGTATCGATA
1 TGTATCGATACAAGG-AACATGTATCGATA
47780 TATCTGGGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 13 0.50
33 13 0.50
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (32 bp):
TGTATCGATACAAGGAACATGTATCGATACAT
Found at i:49483 original size:23 final size:22
Alignment explanation
Indices: 49444--49486 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
49434 GAATTGAAAA
49444 TTTTAAATTTTAAAATTAAATT
1 TTTTAAATTTTAAAATTAAATT
*
49466 TTTTATAATTTTATAATTAAA
1 TTTTA-AATTTTAAAATTAAA
49487 AAATTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTTAAATTTTAAAATTAAATT
Found at i:50846 original size:20 final size:21
Alignment explanation
Indices: 50807--50850 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
50797 TTAAGTATAG
50807 ATGTTTTTCAAGCATAAAAATA
1 ATGTTTTTCAAG-ATAAAAATA
50829 ATGTTTTTCAAG-TAAAAATA
1 ATGTTTTTCAAGATAAAAATA
50849 AT
1 AT
50851 TCAAAGTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 10 0.45
22 12 0.55
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (21 bp):
ATGTTTTTCAAGATAAAAATA
Found at i:50966 original size:32 final size:33
Alignment explanation
Indices: 50906--50970 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
50896 AACCCTAGAA
*
50906 TGTATCGATACATATTGCTTAGTGTCGATACAT
1 TGTATCGATACATATTGCTTAGTATCGATACAT
* *
50939 TGTATTGATACATGTT-CTTAGTATCGATACAT
1 TGTATCGATACATATTGCTTAGTATCGATACAT
50971 ATTGAATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATATTGCTTAGTATCGATACAT
Found at i:51597 original size:31 final size:30
Alignment explanation
Indices: 51544--51602 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
51534 ATAGGGAGAA
51544 AGGTTTTATCTTATCCCGTGAAAAGATAAAG
1 AGGTTTTATCTTATCCCGTG-AAAGATAAAG
* *
51575 AGGTTTCTATCTTA-GCCTTGAAAGATAA
1 AGGTTT-TATCTTATCCCGTGAAAGATAA
51603 TGTTGTAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.32
31 10 0.40
32 7 0.28
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.34
Consensus pattern (30 bp):
AGGTTTTATCTTATCCCGTGAAAGATAAAG
Found at i:53168 original size:21 final size:21
Alignment explanation
Indices: 53142--53217 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
53132 CTGCCAAGAA
*
53142 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
53163 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
53183 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
53204 ATGTATCGATACAT
1 ATGTATCGATACAT
53218 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:53188 original size:20 final size:20
Alignment explanation
Indices: 53163--53235 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
53153 CATCTTTTTT
53163 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
53183 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
53204 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
53224 ATGTATCGATAC
1 ATGTATCGATAC
53236 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:53199 original size:41 final size:41
Alignment explanation
Indices: 53142--53235 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
53132 CTGCCAAGAA
*
53142 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
53183 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
53224 ATGTATCGATAC
1 ATGTATCGATAC
53236 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:55696 original size:13 final size:13
Alignment explanation
Indices: 55678--55716 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
55668 ATAATCACCC
*
55678 TGTATCGATACAG
1 TGTATCGATACAA
55691 TGTATCGATACAA
1 TGTATCGATACAA
55704 TGTATCGATACAA
1 TGTATCGATACAA
55717 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:55727 original size:20 final size:20
Alignment explanation
Indices: 55702--55780 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
55692 GTATCGATAC
55702 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
55722 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
*
55747 GATGTATCGATACACAA-AAA
1 AATGTATCGATACA-AAGAAA
*
55767 CATGTATCGATACA
1 AATGTATCGATACA
55781 TTTTGGACAT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
20 32 0.65
25 16 0.33
26 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:57814 original size:15 final size:15
Alignment explanation
Indices: 57794--57824 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
57784 ATTTCGTTTG
*
57794 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
57809 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
57824 G
1 G
57825 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:67237 original size:32 final size:30
Alignment explanation
Indices: 67201--67259 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
67191 GAAATCAAAT
67201 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
67233 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
67260 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:67471 original size:20 final size:21
Alignment explanation
Indices: 67446--67484 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
67436 TTCCCGTGTG
67446 GATGTATCGATACA-ATTTTT
1 GATGTATCGATACATATTTTT
67466 GATGTATCGATACATATTT
1 GATGTATCGATACATATTT
67485 GAAAATATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (21 bp):
GATGTATCGATACATATTTTT
Found at i:67557 original size:13 final size:13
Alignment explanation
Indices: 67539--67564 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67529 CATATTTTTG
67539 TGTATCGATACAT
1 TGTATCGATACAT
67552 TGTATCGATACAT
1 TGTATCGATACAT
67565 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:67575 original size:32 final size:33
Alignment explanation
Indices: 67519--67582 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 33
67509 TACAAGCCAA
67519 TGTATCGATACATATTTTTGTGTATCGATACAT
1 TGTATCGATACATATTTTTGTGTATCGATACAT
67552 TGTATCGATACATA-TTTTGTGTATCGATACA
1 TGTATCGATACATATTTTTGTGTATCGATACA
67583 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 17 0.55
33 14 0.45
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (33 bp):
TGTATCGATACATATTTTTGTGTATCGATACAT
Found at i:69666 original size:21 final size:20
Alignment explanation
Indices: 69637--69679 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
69627 GACTAGTGTG
* *
69637 GGGACTGCCCGGTTGTGACCT
1 GGGACTG-CCGGTCGCGACCT
*
69658 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
69678 GG
1 GG
69680 TGGTGCTGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.09, C:0.28, G:0.44, T:0.19
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:70129 original size:13 final size:13
Alignment explanation
Indices: 70111--70148 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
70101 ATAATCTCCC
*
70111 TGTATCGATGCAG
1 TGTATCGATACAG
*
70124 TGTATCGATACAT
1 TGTATCGATACAG
70137 TGTATCGATACA
1 TGTATCGATACA
70149 AAGAAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:72226 original size:15 final size:15
Alignment explanation
Indices: 72206--72236 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
72196 ATTTCGTTTG
*
72206 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
72221 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
72236 G
1 G
72237 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:74061 original size:21 final size:21
Alignment explanation
Indices: 74032--74076 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
74022 AAATTTTTAT
*
74032 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
74052 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
74074 TTT
1 TTT
74077 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:75994 original size:32 final size:30
Alignment explanation
Indices: 75958--76016 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
75948 GAAATCAAAT
75958 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
75990 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
76017 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:76315 original size:13 final size:13
Alignment explanation
Indices: 76297--76322 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76287 ATATTTTTTG
76297 TGTATCGATACAT
1 TGTATCGATACAT
76310 TGTATCGATACAT
1 TGTATCGATACAT
76323 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:76333 original size:32 final size:33
Alignment explanation
Indices: 76276--76340 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 33
76266 TACAAGCCAA
76276 TGTATCGATACATATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-TTTTTGTGTATCGATACAT
76310 TGTATCGATACATA-TTTTGTGTATCGATACA
1 TGTATCGATACATATTTTTGTGTATCGATACA
76341 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 17 0.55
34 14 0.45
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (33 bp):
TGTATCGATACATATTTTTGTGTATCGATACAT
Found at i:76334 original size:19 final size:19
Alignment explanation
Indices: 76276--76340 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
76266 TACAAGCCAA
76276 TGTATCGATACATATTTTTTG
1 TGTATCGATACATA--TTTTG
76297 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
76310 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
76329 TGTATCGATACA
1 TGTATCGATACA
76341 AGTTTGGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
15 1 0.03
18 1 0.03
19 13 0.34
21 11 0.29
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:80989 original size:13 final size:13
Alignment explanation
Indices: 80971--80998 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
80961 ACATTTGGTC
80971 ATGTATCGATACA
1 ATGTATCGATACA
80984 ATGTATCGATACA
1 ATGTATCGATACA
80997 AT
1 AT
80999 TGAAAGTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:83612 original size:8 final size:8
Alignment explanation
Indices: 83594--83624 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
83584 TTTTCAACAT
83594 CAAACATCA
1 CAAA-ATCA
83603 CAAAATCA
1 CAAAATCA
83611 CAAAATCA
1 CAAAATCA
83619 CAAAAT
1 CAAAAT
83625 TTAATCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.82
9 4 0.18
ACGTcount: A:0.61, C:0.26, G:0.00, T:0.13
Consensus pattern (8 bp):
CAAAATCA
Found at i:89438 original size:13 final size:13
Alignment explanation
Indices: 89420--89444 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89410 TATTTTGGGA
89420 TGTATCGATACAT
1 TGTATCGATACAT
89433 TGTATCGATACA
1 TGTATCGATACA
89445 AACAATTAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:89544 original size:13 final size:13
Alignment explanation
Indices: 89526--89550 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89516 ACATTTGGTC
89526 ATGTATCGATACA
1 ATGTATCGATACA
89539 ATGTATCGATAC
1 ATGTATCGATAC
89551 TGTGCAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:93940 original size:9 final size:9
Alignment explanation
Indices: 93926--94048 Score: 86
Period size: 9 Copynumber: 12.4 Consensus size: 9
93916 CGTCCTTCAC
93926 AAAAAAACAA
1 AAAAAAAC-A
*
93936 AAAAAAAGA
1 AAAAAAACA
*
93945 AAGAAGAAAAA
1 AA-AA-AAACA
*
93956 AAAGAAGAAGA
1 AAA-AA-AACA
93967 AAAAAAACA
1 AAAAAAACA
93976 AACAAACAA-A
1 AA-AAA-AACA
*
93986 AAAATAACA
1 AAAAAAACA
93995 AAAAAAACAA
1 AAAAAAAC-A
94005 ACAAAATAGACA
1 A-AAAA-A-ACA
94017 AAAAAAACAA
1 AAAAAAAC-A
94027 AAAAAAACA
1 AAAAAAACA
*
94036 AAAACAACA
1 AAAAAAACA
94045 AAAA
1 AAAA
94049 GGGTCCGGAT
Statistics
Matches: 94, Mismatches: 7, Indels: 25
0.75 0.06 0.20
Matches are distributed among these distances:
8 2 0.02
9 33 0.35
10 31 0.33
11 23 0.24
12 3 0.03
13 2 0.02
ACGTcount: A:0.83, C:0.10, G:0.06, T:0.02
Consensus pattern (9 bp):
AAAAAAACA
Found at i:93956 original size:16 final size:15
Alignment explanation
Indices: 93935--93973 Score: 69
Period size: 15 Copynumber: 2.5 Consensus size: 15
93925 CAAAAAAACA
93935 AAAAAAAAGAAAGAAG
1 AAAAAAAAG-AAGAAG
93951 AAAAAAAAGAAGAAG
1 AAAAAAAAGAAGAAG
93966 AAAAAAAA
1 AAAAAAAA
93974 CAAACAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAGAAG
Found at i:94045 original size:28 final size:27
Alignment explanation
Indices: 93926--94048 Score: 93
Period size: 31 Copynumber: 4.2 Consensus size: 27
93916 CGTCCTTCAC
* *
93926 AAAAAAACAAAAAAAAAGAAAGAAGAAA
1 AAAAAAACAAAAAAAAACAAA-AACAAA
*
93954 AAAAAGAAGAAGAAAAAAAACAAACAAACAAA
1 AAAAA-AA-CA-AAAAAAAAC-AA-AAACAAA
* * *
93986 AAAATAACAAAAAAAACAAACAAAATAGACA
1 AAAA-AA-ACAAAAAA-AAACAAAA-ACAAA
*
94017 AAAAAAACAAAAAAAAACAAAAACAAC
1 AAAAAAACAAAAAAAAACAAAAACAAA
94044 AAAAA
1 AAAAA
94049 GGGTCCGGAT
Statistics
Matches: 77, Mismatches: 9, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
27 7 0.09
28 13 0.17
29 9 0.12
30 5 0.06
31 22 0.29
32 18 0.23
33 3 0.04
ACGTcount: A:0.83, C:0.10, G:0.06, T:0.02
Consensus pattern (27 bp):
AAAAAAACAAAAAAAAACAAAAACAAA
Found at i:94048 original size:1 final size:1
Alignment explanation
Indices: 93926--94039 Score: 57
Period size: 1 Copynumber: 114.0 Consensus size: 1
93916 CGTCCTTCAC
* * * * * * * * * * *
93926 AAAAAAACAAAAAAAAAGAAAGAAGAAAAAAAAGAAGAAGAAAAAAAACAAACAAACAAAAAAAT
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * *
93991 AACAAAAAAAACAAACAAAATAGACAAAAAAAACAAAAAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
94040 CAACAAAAAG
Statistics
Matches: 75, Mismatches: 38, Indels: 0
0.66 0.34 0.00
Matches are distributed among these distances:
1 75 1.00
ACGTcount: A:0.83, C:0.09, G:0.06, T:0.02
Consensus pattern (1 bp):
A
Found at i:95470 original size:28 final size:28
Alignment explanation
Indices: 95423--95573 Score: 144
Period size: 28 Copynumber: 5.2 Consensus size: 28
95413 AGACATTCCT
*
95423 CACCCTATCAAAAGCCCACAAGTCAATGG
1 CACCCT-TCAAAAGCCCACAAGTCAGTGG
95452 CGA-CCTTCAAAAGCCCACAAGTCAGTGG
1 C-ACCCTTCAAAAGCCCACAAGTCAGTGG
***
95480 CACCCTTTTTTTGAAGCCCACAAGTCAGTGG
1 CACCC---TTCAAAAGCCCACAAGTCAGTGG
** *
95511 CATCTTTTCCAAAGCCCACAAGTCAGTGG
1 CA-CCCTTCAAAAGCCCACAAGTCAGTGG
* * *
95540 CAACCTTCAAAAGCCCACAACTCTGTGG
1 CACCCTTCAAAAGCCCACAAGTCAGTGG
95568 C-CCCTT
1 CACCCTT
95574 GTTCCTTTAG
Statistics
Matches: 100, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
27 5 0.05
28 45 0.45
29 26 0.26
30 1 0.01
31 22 0.22
32 1 0.01
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.21
Consensus pattern (28 bp):
CACCCTTCAAAAGCCCACAAGTCAGTGG
Found at i:95500 original size:31 final size:30
Alignment explanation
Indices: 95433--95546 Score: 119
Period size: 29 Copynumber: 3.8 Consensus size: 30
95423 CACCCTATCA
* *
95433 AAAGCCCACAAGTCAATGGCGACC---TTCA
1 AAAGCCCACAAGTCAGTGGC-ACCTTTTTCC
**
95461 AAAGCCCACAAGTCAGTGGCACCCTTTTTTT
1 AAAGCCCACAAGTCAGTGGCA-CCTTTTTCC
* *
95492 GAAGCCCACAAGTCAGTGGCATC-TTTTCC
1 AAAGCCCACAAGTCAGTGGCACCTTTTTCC
95521 AAAGCCCACAAGTCAGTGGCAACCTT
1 AAAGCCCACAAGTCAGTGGC-ACCTT
95547 CAAAAGCCCA
Statistics
Matches: 71, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
27 1 0.01
28 21 0.30
29 23 0.32
30 3 0.04
31 23 0.32
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (30 bp):
AAAGCCCACAAGTCAGTGGCACCTTTTTCC
Found at i:95534 original size:60 final size:59
Alignment explanation
Indices: 95434--95546 Score: 165
Period size: 60 Copynumber: 1.9 Consensus size: 59
95424 ACCCTATCAA
*
95434 AAGCCCACAAGTCAATGGCGACCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTTTTG
1 AAGCCCACAAGTCAATGGCGACCTTCAAAAGCCCACAAGTCAGTGGCAACCTTTTTTTG
* * *
95493 AAGCCCACAAGTCAGTGGC-ATCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTT
1 AAGCCCACAAGTCAATGGCGA-C-CTTCAAAAGCCCACAAGTCAGTGGCAACCTT
95547 CAAAAGCCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
58 1 0.02
59 19 0.40
60 28 0.58
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (59 bp):
AAGCCCACAAGTCAATGGCGACCTTCAAAAGCCCACAAGTCAGTGGCAACCTTTTTTTG
Found at i:95618 original size:88 final size:86
Alignment explanation
Indices: 95434--95619 Score: 207
Period size: 88 Copynumber: 2.1 Consensus size: 86
95424 ACCCTATCAA
* *
95434 AAGCCCACAAGTCAATGGCGACCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTTTTGAAGCCC
1 AAGCCCACAAGTCAATGGCAACCTTCAAAAGCCCACAACTCAGTGGCACCCTTTTTTTGAAGCCC
* * *
95499 ACAAGTCAGTGGCATCTTTTCC
66 ACAACTCAGTGACACCTTTT-C
* *
95521 AAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAACTCTGTGGC-CCCTTGTTCCTTT-AG
1 -AAGCCCACAAGTCAATGGCAACCTTCAAAAGCCCACAACTCAGTGGCACCCTT-TT--TTTGA-
*
95584 AGCCCACAACTCCGTGACACCCTTTT-
61 AGCCCACAACTCAGTGACA-CCTTTTC
*
95610 AAGTCCACAA
1 AAGCCCACAA
95620 CTTTGTGGCA
Statistics
Matches: 84, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
87 5 0.06
88 54 0.64
89 1 0.01
90 19 0.23
91 5 0.06
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (86 bp):
AAGCCCACAAGTCAATGGCAACCTTCAAAAGCCCACAACTCAGTGGCACCCTTTTTTTGAAGCCC
ACAACTCAGTGACACCTTTTC
Found at i:95668 original size:25 final size:27
Alignment explanation
Indices: 95587--95658 Score: 108
Period size: 27 Copynumber: 2.7 Consensus size: 27
95577 CCTTTAGAGC
*
95587 CCACAACTCCGTGACACCCTTTTAAGT
1 CCACAACTCCGTGGCACCCTTTTAAGT
**
95614 CCACAACTTTGTGGCACCCTTTTAAGT
1 CCACAACTCCGTGGCACCCTTTTAAGT
*
95641 CCACAACTCCATGGCACC
1 CCACAACTCCGTGGCACC
95659 TTTATGTCCA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.25, C:0.38, G:0.12, T:0.25
Consensus pattern (27 bp):
CCACAACTCCGTGGCACCCTTTTAAGT
Found at i:95840 original size:43 final size:44
Alignment explanation
Indices: 95755--96277 Score: 258
Period size: 43 Copynumber: 11.2 Consensus size: 44
95745 GCACCTTAAC
* * ***
95755 CATCTTTAAGACCAATATCGTTGGCCTTGAATCAGTGCATTGG-
1 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGT
* *
95798 CAGCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
1 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG--T
* * * *
95844 CATTACCCTCTTGAGTCTAATATTGCTGGCCTTGAATCAGCGTATTGGCACCCTT
1 CA-T---CT-TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG------T
** * **
95899 ACCATCTTTTAAAACCAATGTCGCTGGCCTTGAATCAGCACGTTGG-
1 --CATC-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGT
* * *
95945 CA----TAAGTCTAATATTGCTGGCCTTGACTCAGCATATTGGCGCCTTTGT
1 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT---G-----GT
* * ** * *
95993 CACCTTTAAGTCTAACGTCGCCGGCCTTGAATCAGCACATTGGTATCTT
1 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG-----T
* * *
96042 CATCTTTAAGTCCAATATCACTGACCTTGAATCGGCATATTGG-
1 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGT
* * *
96085 CA-CTTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTT
1 CATC-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG-----T
96134 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG-
1 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGT
* * * *
96177 CACCTTTAAGTCCAATGTCG-TCGGCCTTGAATCAACACATTGGTATCTT
1 CATCTTTAAGTCCAATATCGCT-GGCCTTGAATCAGCATATTGG-----T
* **
96226 CATCTTTAAGTCCGATATCATTGGCCTTGAATCAGCATATTGG-
1 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGT
96269 CATCTTTAA
1 CATCTTTAA
96278 CATTCCTAAA
Statistics
Matches: 367, Mismatches: 64, Indels: 98
0.69 0.12 0.19
Matches are distributed among these distances:
39 27 0.07
42 3 0.01
43 118 0.32
44 3 0.01
46 2 0.01
47 1 0.00
48 2 0.01
49 109 0.30
50 4 0.01
51 34 0.09
52 29 0.08
53 30 0.08
54 1 0.00
55 1 0.00
56 1 0.00
57 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (44 bp):
CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGT
Found at i:95840 original size:95 final size:94
Alignment explanation
Indices: 95666--95893 Score: 251
Period size: 95 Copynumber: 2.4 Consensus size: 94
95656 ACCTTTATGT
** * *
95666 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTTTTTAAGACCAATGTCGCTGGCCTT
1 CCAATATCGCTGGCCTTGAATCAGCGCATTGGCA----G-CTTTAAGACCAATATCGCTGGCCTT
*
95731 GACTCAGCACATTGGCACC-TTAACCATCTTTAAGA
61 GAATCAGCACATTGGCACCATT-ACCATC-TTAAGA
* * *
95766 CCAATATCGTTGGCCTTGAATCAGTGCATTGGCAGCTTTAAGTCCAATATCGCTGGCCTTGAATC
1 CCAATATCGCTGGCCTTGAATCAGCGCATTGGCAGCTTTAAGACCAATATCGCTGGCCTTGAATC
* * * *
95831 AGCATATTGGCACCATTACCCTCTTGAGT
66 AGCACATTGGCACCATTACCATCTTAAGA
* * *
95860 CTAATATTGCTGGCCTTGAATCAGCGTATTGGCA
1 CCAATATCGCTGGCCTTGAATCAGCGCATTGGCA
95894 CCCTTACCAT
Statistics
Matches: 110, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
94 33 0.30
95 44 0.40
96 3 0.03
100 30 0.27
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (94 bp):
CCAATATCGCTGGCCTTGAATCAGCGCATTGGCAGCTTTAAGACCAATATCGCTGGCCTTGAATC
AGCACATTGGCACCATTACCATCTTAAGA
Found at i:95890 original size:51 final size:51
Alignment explanation
Indices: 95806--96180 Score: 190
Period size: 49 Copynumber: 7.8 Consensus size: 51
95796 GGCAGCTTTA
*
95806 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATTACCCTCTTG
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATTACCATCTTG
* * * * *
95857 AGTCTAATATTGCTGGCCTTGAATCAGCGTATTGGCACCCTTACCATCTTTTA
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATTACCATC--TTG
** * **
95910 AAACCAATGTCGCTGGCCTTGAATCAGCACGTTGG---CA-T---A-----
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATTACCATCTTG
* * * * * ** * *
95949 AGTCTAATATTGCTGGCCTTGACTCAGCATATTGGCGCCTTTGTCACCTTTA
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATTACCATC-TTG
* ** * * * * *
96001 AGTCTAACGTCGCCGGCCTTGAATCAGCACATTGGTATC-TT--CATCTTTA
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATTACCATC-TTG
* * * *
96050 AGTCCAATATCACTGACCTTGAATCGGCATATTGGCA-C--T----T-TTA
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATTACCATCTTG
* * * * *
96093 AGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCATC-TT--CATCTTTA
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATTACCATC-TTG
96142 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
1 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
96181 TTTAAGTCCA
Statistics
Matches: 250, Mismatches: 53, Indels: 44
0.72 0.15 0.13
Matches are distributed among these distances:
39 27 0.11
42 1 0.00
43 35 0.14
44 1 0.00
45 2 0.01
46 2 0.01
47 2 0.01
48 1 0.00
49 74 0.30
50 1 0.00
51 45 0.18
52 30 0.12
53 29 0.12
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.32
Consensus pattern (51 bp):
AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATTACCATCTTG
Found at i:95946 original size:53 final size:51
Alignment explanation
Indices: 95809--95938 Score: 161
Period size: 51 Copynumber: 2.5 Consensus size: 51
95799 AGCTTTAAGT
* **
95809 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATTACCCTCTTGAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATTACCCTCTTAAAA
* * * * *
95860 CTAATATTGCTGGCCTTGAATCAGCGTATTGGCACCCTTACCATCTTTTAAAA
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATTACC--CTCTTAAAA
*
95913 CCAATGTCGCTGGCCTTGAATCAGCA
1 CCAATATCGCTGGCCTTGAATCAGCA
95939 CGTTGGCATA
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
51 38 0.58
53 27 0.42
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.30
Consensus pattern (51 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATTACCCTCTTAAAA
Found at i:96070 original size:49 final size:48
Alignment explanation
Indices: 96015--96274 Score: 254
Period size: 49 Copynumber: 5.5 Consensus size: 48
96005 TAACGTCGCC
96015 GGCCTTGAATCAGCACATTGGTATCTTCATCTTTAAGTCCAATATCACT
1 GGCCTTGAATCAGCACATTGG-ATCTTCATCTTTAAGTCCAATATCACT
* * * * * * *
96064 GACCTTGAATCGGCATATTGG--C-AC-T-TTTAAGTCTAATGTCGCT
1 GGCCTTGAATCAGCACATTGGATCTTCATCTTTAAGTCCAATATCACT
*
96107 GGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATCGCT
1 GGCCTTGAATCAGCACATTGG-ATCTTCATCTTTAAGTCCAATATCACT
* * * *
96156 GGCCTTGAATCAGCATATTGG-----CACCTTTAAGTCCAATGTC-GT
1 GGCCTTGAATCAGCACATTGGATCTTCATCTTTAAGTCCAATATCACT
* * *
96198 CGGCCTTGAATCAACACATTGGTATCTTCATCTTTAAGTCCGATATCATT
1 -GGCCTTGAATCAGCACATTGG-ATCTTCATCTTTAAGTCCAATATCACT
*
96248 GGCCTTGAATCAGCATATTGGCATCTT
1 GGCCTTGAATCAGCACATTGG-ATCTT
96275 TAACATTCCT
Statistics
Matches: 171, Mismatches: 26, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
42 1 0.01
43 69 0.40
44 1 0.01
45 1 0.01
46 2 0.01
47 1 0.01
48 1 0.01
49 94 0.55
50 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.34
Consensus pattern (48 bp):
GGCCTTGAATCAGCACATTGGATCTTCATCTTTAAGTCCAATATCACT
Found at i:96111 original size:92 final size:92
Alignment explanation
Indices: 95997--96275 Score: 434
Period size: 92 Copynumber: 3.0 Consensus size: 92
95987 CTTTGTCACC
* *
95997 TTTAAGTCTAACGTCGCCGGCCTTGAATCAGCACATTGGTATCTTCATCTTTAAGTCCAATATCA
1 TTTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGTATCTTCATCTTTAAGTCCAATATCA
* *
96062 CTGACCTTGAATCGGCATATTGGCACT
66 CTGGCCTTGAATCAGCATATTGGCACT
* *
96089 TTTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATCG
1 TTTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGTATCTTCATCTTTAAGTCCAATATCA
*
96154 CTGGCCTTGAATCAGCATATTGGCACC
66 CTGGCCTTGAATCAGCATATTGGCACT
* * *
96181 TTTAAGTCCAATGTCG-TCGGCCTTGAATCAACACATTGGTATCTTCATCTTTAAGTCCGATATC
1 TTTAAGTCTAATGTCGCT-GGCCTTGAATCAGCACATTGGTATCTTCATCTTTAAGTCCAATATC
*
96245 ATTGGCCTTGAATCAGCATATTGGCATCT
65 ACTGGCCTTGAATCAGCATATTGGCA-CT
96274 TT
1 TT
96276 AACATTCCTA
Statistics
Matches: 171, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
91 1 0.01
92 167 0.98
93 3 0.02
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (92 bp):
TTTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGTATCTTCATCTTTAAGTCCAATATCA
CTGGCCTTGAATCAGCATATTGGCACT
Found at i:96972 original size:13 final size:13
Alignment explanation
Indices: 96954--97043 Score: 63
Period size: 13 Copynumber: 6.0 Consensus size: 13
96944 TTTAACAATT
96954 TGTATCGATACAA
1 TGTATCGATACAA
96967 TGTATCGATACATAA
1 TGTATCGATAC--AA
96982 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
96999 TGTATCGATACATAA
1 TGTATCGATAC--AA
97014 GTTTTGTATCGATACAA
1 ----TGTATCGATACAA
*
97031 TGTATCGCTACAA
1 TGTATCGATACAA
97044 AGCTACTGCC
Statistics
Matches: 64, Mismatches: 1, Indels: 24
0.72 0.01 0.27
Matches are distributed among these distances:
13 34 0.53
15 4 0.06
17 4 0.06
19 22 0.34
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:96991 original size:19 final size:18
Alignment explanation
Indices: 96967--97029 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
96957 ATCGATACAA
96967 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
96986 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
96999 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
97018 TGTATCGATACA
1 TGTATCGATACA
97030 ATGTATCGCT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
15 2 0.05
17 2 0.05
19 23 0.61
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:96994 original size:32 final size:32
Alignment explanation
Indices: 96953--97042 Score: 162
Period size: 32 Copynumber: 2.8 Consensus size: 32
96943 TTTTAACAAT
96953 TTGTATCGATACAATGTATCGATACATAAGTG
1 TTGTATCGATACAATGTATCGATACATAAGTG
*
96985 TTGTATCGATACAATGTATCGATACATAAGTT
1 TTGTATCGATACAATGTATCGATACATAAGTG
*
97017 TTGTATCGATACAATGTATCGCTACA
1 TTGTATCGATACAATGTATCGATACA
97043 AAGCTACTGC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (32 bp):
TTGTATCGATACAATGTATCGATACATAAGTG
Found at i:97099 original size:13 final size:13
Alignment explanation
Indices: 97081--97106 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97071 CATTATTCCA
97081 TGTATCGATACAT
1 TGTATCGATACAT
97094 TGTATCGATACAT
1 TGTATCGATACAT
97107 GGACTTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:104079 original size:19 final size:20
Alignment explanation
Indices: 104035--104081 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
104025 CTGCCAATCT
**
104035 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
104055 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
104074 CATGTATC
1 CATGTATC
104082 ATTGTATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:104855 original size:34 final size:34
Alignment explanation
Indices: 104811--104895 Score: 89
Period size: 35 Copynumber: 2.4 Consensus size: 34
104801 GACTACTCAA
* * *
104811 TCAAATTTTTCCATCATCGTTCGACTGTATCTGG
1 TCAAACTTTTCCATCACCATTCGACTGTATCTGG
* * *
104845 TCAAACTTTTCCCACCACCATTTGATTGTATCTGG
1 TCAAACTTTT-CCATCACCATTCGACTGTATCTGG
*
104880 TCAAACTCTTTTCATC
1 TCAAACT-TTTCCATC
104896 TCTCGTTTGA
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
34 9 0.22
35 29 0.71
36 3 0.07
ACGTcount: A:0.22, C:0.27, G:0.11, T:0.40
Consensus pattern (34 bp):
TCAAACTTTTCCATCACCATTCGACTGTATCTGG
Found at i:105257 original size:42 final size:41
Alignment explanation
Indices: 105211--105312 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 41
105201 TTAGACTCTG
* *
105211 GAGACCTTTCTATCTTTTATCTGC-CTGTCGGCTTAGACCTAA
1 GAGA-CTTTCTATCTTTTATCTACTC-ATCGGCTTAGACCTAA
* *
105253 GAGACTTTACTATCTTTTGTCTACTCATCGGCTTAGACCTAG
1 GAGACTTT-CTATCTTTTATCTACTCATCGGCTTAGACCTAA
*
105295 GAGACTTCTTTATCTTTT
1 GAGACTT-TCTATCTTTT
105313 GTTTGCTCGT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
41 4 0.08
42 46 0.88
43 2 0.04
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.41
Consensus pattern (41 bp):
GAGACTTTCTATCTTTTATCTACTCATCGGCTTAGACCTAA
Found at i:105313 original size:42 final size:42
Alignment explanation
Indices: 105238--105356 Score: 141
Period size: 42 Copynumber: 2.8 Consensus size: 42
105228 TATCTGCCTG
*
105238 TCGGCTTAGACCTAAGAGACTT-TACTATCTTTTGTCTACTCA
1 TCGGCTTAGACCTAAGAGACTTCT-TTATCTTTTGTCTACTCA
* * * *
105280 TCGGCTTAGACCTAGGAGACTTCTTTATCTTTTGTTTGCTCG
1 TCGGCTTAGACCTAAGAGACTTCTTTATCTTTTGTCTACTCA
* * * *
105322 TCGACTTAGGCCCAAGAGACTTCTTTATCCTTTGT
1 TCGGCTTAGACCTAAGAGACTTCTTTATCTTTTGT
105357 TTGCCTATCG
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
42 65 0.98
43 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (42 bp):
TCGGCTTAGACCTAAGAGACTTCTTTATCTTTTGTCTACTCA
Found at i:105356 original size:84 final size:84
Alignment explanation
Indices: 105157--105356 Score: 183
Period size: 84 Copynumber: 2.4 Consensus size: 84
105147 TACCCGTTGG
* * * * * *
105157 CTTAGACACTAGAGACTTTCTTTACCCTTTGTTTGCCCGTCAGCTTAGACTCTGGAGACCTTTCT
1 CTTAGACCCAAGAGAC-TTCTTTATCCTTTGTCTACCCATCAGCTTAGACTCTGGAGACCTTTCT
*
105222 ATCTTTTATCTGCCTGTCGG
65 ATCTTTTATCTGCCTGTCGA
* * * * *
105242 CTTAGACCTAAGAGACTT-TACTATCTTTTGTCTACTCATCGGCTTAGAC-CTAGGAGA-CTTCT
1 CTTAGACCCAAGAGACTTCT-TTATCCTTTGTCTACCCATCAGCTTAGACTCT-GGAGACCTT-T
* * *
105304 TTATCTTTTGTTTG-CTCGTCGA
63 CTATCTTTTATCTGCCT-GTCGA
*
105326 CTTAGGCCCAAGAGACTTCTTTATCCTTTGT
1 CTTAGACCCAAGAGACTTCTTTATCCTTTGT
105357 TTGCCTATCG
Statistics
Matches: 91, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
83 8 0.09
84 69 0.76
85 14 0.15
ACGTcount: A:0.18, C:0.25, G:0.17, T:0.40
Consensus pattern (84 bp):
CTTAGACCCAAGAGACTTCTTTATCCTTTGTCTACCCATCAGCTTAGACTCTGGAGACCTTTCTA
TCTTTTATCTGCCTGTCGA
Found at i:105487 original size:43 final size:42
Alignment explanation
Indices: 105437--106221 Score: 607
Period size: 43 Copynumber: 18.4 Consensus size: 42
105427 ACTTCATCTC
* * * *
105437 AAGTCTGCCTGTTGGCTTTGACCTTGGAGACTTCTTTGCCCTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTT-TTTACCCTT
* * * **
105480 AAGTCTGCTTGTCGACTTTGACCTTAGAGACTTCTTCCCCCTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTT-TTTACCCTT
* * *
105523 AAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTCACCTTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTT-TTTACCCTT
* * * *
105566 AAATCTGCCTGT-GGATTGTGACCCTAGAGCCTTTCTTA-CCAT
1 AAGTCTGCCTGTCGGCTT-TGACCCTAGAGACTTT-TTACCCTT
* * *
105608 AAGTCTGCTTGTCGGCTTTAACCCTAGAGACTTCTT-CGCTCTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTTTAC-C-CTT
* * * *
105651 AAGTCTGCCTGTCAGCTTTGACCCTGGAGACTTTTTTGCCCTA
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TTTTTACCCTT
* *
105694 AAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTTCTTA-CCAT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTT-TTACCCTT
* * * **
105736 AAGTCTGCTTGTCAGCTTTGACCCTAGAAACTTCTTCGCCCTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTT-TTTACCCTT
* * *
105779 AAGTTTGCCTGTCGGCTTTAACCCTAGAGACTTATT-CCCTTTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTTTACCC--TT
** ** * *
105822 AAGTCTATCTACCGGCTTTGACCCTAGAGACTATTCACCCTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTTTACCCTT
* * * **
105864 AAGTTTTCCTATCAACTTTGACCCTAGAGACTTTTT-CGCTCTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTTTAC-C-CTT
* * * * * *
105907 AAGTTTACCTGTCGACTTTGACCCTAAAGACTTATTCCCCTTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTTTACCC-TT
* *
105950 AAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTATTCACCCTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTT-TTTACCCTT
* * *
105993 AAGTCTGCCTGTTGGCTTTGACCCTGGAGA-TTTTTTCCCTCT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTTTACCCT-T
*** ** * * *
106035 AAGTCTATGTGTTAGCTTTGACCTTGGAGACTTATT-CCCTTCT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTTTACCC-T-T
* * * *
106078 AAGTCTGTCTATCGACTTTGACCCTAGAGACTTATTCACCCTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTT-TTTACCCTT
*
106121 AAGTCTGTCTGTCGGCTTTGACCCTAGAGACTTTCTTCACCCTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTT-TT-ACCCTT
* ** * * * *
106165 AAGTCTGCTTGTCAACTTTAACCTTGGAGACTTCTTCACCCTT
1 AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTT-TTTACCCTT
* *
106208 -TGTCTGCCTATCGG
1 AAGTCTGCCTGTCGG
106222 TTTAGACTTG
Statistics
Matches: 600, Mismatches: 115, Indels: 55
0.78 0.15 0.07
Matches are distributed among these distances:
41 12 0.02
42 142 0.24
43 393 0.65
44 48 0.08
45 5 0.01
ACGTcount: A:0.18, C:0.27, G:0.17, T:0.37
Consensus pattern (42 bp):
AAGTCTGCCTGTCGGCTTTGACCCTAGAGACTTTTTACCCTT
Found at i:105611 original size:128 final size:127
Alignment explanation
Indices: 105437--106197 Score: 673
Period size: 128 Copynumber: 5.9 Consensus size: 127
105427 ACTTCATCTC
* * **
105437 AAGTCTGCCTGTTGGCTTTGACCTTGGAGAC-TTCTTTGCCCTTAAGTCTGCTTGTCGACTTTGA
1 AAGTCTGCCTG-TGGCTTTGACCCTAGAGACTTTC-TCACCCTTAAGTCTGCTTGTCGACTTTGA
* * * * *
105501 CCTTAGAGACTTCTTCCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTCACCTTT
64 CCCTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTATTC-CCTTT
* * * * * * *
105566 AAATCTGCCTGTGGATTGTGACCCTAGAGCCTTTCTTA-CCATAAGTCTGCTTGTCGGCTTTAAC
1 AAGTCTGCCTGTGGCTT-TGACCCTAGAGACTTTCTCACCCTTAAGTCTGCTTGTCGACTTTGAC
* * * *
105630 CCTAGAGACTTCTTCGCTCTTAAGTCTGCCTGTCAGCTTTGACCCTGGAGACTTTTTTGCCC-TA
65 CCTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCAGCTTTGACCCTAGAGAC-TTATT-CCCTTT
* * *
105694 AAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTTCTTA-CCATAAGTCTGCTTGTC-AGCTTTGA
1 AAGTCTGCCTGT-GGCTTTGACCCTAGAGACTTTCTCACCCTTAAGTCTGCTTGTCGA-CTTTGA
* * * *
105757 CCCTAGAAACTTCTTCGCCCTTAAGTTTGCCTGTCGGCTTTAACCCTAGAGACTTATTCCCTTTT
64 CCCTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTATTCCC-TTT
** ** * * * * * *
105822 AAGTCTATCTACCGGCTTTGACCCTAGAGACTAT-TCACCCTTAAGTTTTCCTATCAACTTTGAC
1 AAGTCTGCCT-GTGGCTTTGACCCTAGAGACTTTCTCACCCTTAAGTCTGCTTGTCGACTTTGAC
* * * * *
105886 CCTAGAGACTTTTTCGCTCTTAAGTTTACCTGTC-GACTTTGACCCTAAAGACTTATTCCCCTTT
65 CCTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCAG-CTTTGACCCTAGAGACTTATT-CCCTTT
* * * *
105950 AAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTAT-TCACCCTTAAGTCTGCCTGTTGGCTTTGA
1 AAGTCTGCCTGT-GGCTTTGACCCTAGAGACTT-TCTCACCCTTAAGTCTGCTTGTCGACTTTGA
* ** *** * * *
106014 CCCTGGAGA-TT-TTTTCCCTCTAAGTCTATGTGTTAGCTTTGACCTTGGAGACTTATTCCCTTC
64 CCCTAGAGACTTCTTCGCCCT-TAAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTATTCCCTT-
106077 T
127 T
* * * *
106078 AAGTCTGTCTATCGACTTTGACCCTAGAGACTTAT-TCACCCTTAAGTCTG-TCTGTCGGCTTTG
1 AAGTCTGCCTGT-GGCTTTGACCCTAGAGACTT-TCTCACCCTTAAGTCTGCT-TGTCGACTTTG
* * * * * *
106141 ACCCTAGAGACTTTCTTCACCCTTAAGTCTGCTTGTCAACTTTAACCTTGGAGACTT
63 ACCCTAGAGAC-TTCTTCGCCCTTAAGTCTGCCTGTCAGCTTTGACCCTAGAGACTT
106198 CTTCACCCTT
Statistics
Matches: 523, Mismatches: 87, Indels: 43
0.80 0.13 0.07
Matches are distributed among these distances:
126 3 0.01
127 17 0.03
128 394 0.75
129 69 0.13
130 34 0.07
131 6 0.01
ACGTcount: A:0.19, C:0.27, G:0.17, T:0.37
Consensus pattern (127 bp):
AAGTCTGCCTGTGGCTTTGACCCTAGAGACTTTCTCACCCTTAAGTCTGCTTGTCGACTTTGACC
CTAGAGACTTCTTCGCCCTTAAGTCTGCCTGTCAGCTTTGACCCTAGAGACTTATTCCCTTT
Found at i:105640 original size:171 final size:170
Alignment explanation
Indices: 105437--106207 Score: 693
Period size: 171 Copynumber: 4.5 Consensus size: 170
105427 ACTTCATCTC
* * * * **
105437 AAGTCTGCCTGTTGGCTTTGACCTTGGAGACTTCTTTGCCCTTAAGTCTGCTTGTCGACTTTGAC
1 AAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTCACCCTTAAGTCTGCTTGTCGACTTTGAC
* * * *
105502 CTTAGAGACTTCTTCCCCCTTAAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTCACCTTTA
66 CCTGGAGACTTCTTCACCCTTAAGTCTGCTTGTCAGCTTTGACCCTAGAGACTTCTTC-CCTTTA
* * * * *
105567 AATCTGCCTGTGGA-TTGTGACCCTAGAGCCTT-TCTTACCAT
130 AGTCTGCCTGTCGACTT-TGACCCTAGAGACTTAT-TCACCTT
* * * *
105608 AAGTCTGCTTGTCGGCTTTAACCCTAGAGACTTCTTCGCTCTTAAGTCTGCCTGTC-AGCTTTGA
1 AAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTCACCCTTAAGTCTGCTTGTCGA-CTTTGA
* ** * * * *
105672 CCCTGGAGACTTTTTTGCCCTAAAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTTCTTACC-AT
65 CCCTGGAGACTTCTTCACCCTTAAGTCTGCTTGTCAGCTTTGACCCTAGAGAC-TTCTTCCCTTT
* * * *
105736 AAGTCTGCTTGTC-AGCTTTGACCCTAGAAACTTCTTCGCCCTT
129 AAGTCTGCCTGTCGA-CTTTGACCCTAGAGACTTATTC-ACCTT
* * * * * * ** *
105779 AAGTTTGCCTGTCGGCTTTAACCCTAGAGACTTATTC-CCTTTTAAGTCT-ATCTACCGGCTTTG
1 AAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTCACC-CTTAAGTCTGCT-TGTCGACTTTG
* * * * * * * * *
105842 ACCCTAGAGAC-TATTCACCCTTAAGTTTTCCTATCAACTTTGACCCTAGAGACTTTTTCGCTCT
64 ACCCTGGAGACTTCTTCACCCTTAAGTCTGCTTGTCAGCTTTGACCCTAGAGACTTCTTCCCT-T
* * * *
105906 TAAGTTTACCTGTCGACTTTGACCCTAAAGACTTATTCCCCTTT
128 TAAGTCTGCCTGTCGACTTTGACCCTAGAGACTTATTCACC-TT
* * * *
105950 AAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTATTCACCCTTAAGTCTGCCTGTTGGCTTTGAC
1 AAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTCACCCTTAAGTCTGCTTGTCGACTTTGAC
** * * * * *
106015 CCTGGAGA-TT-TTTTCCCTCTAAGTCT-ATGTGTTAGCTTTGACCTTGGAGACTTATTCCCTTC
66 CCTGGAGACTTCTTCACCCT-TAAGTCTGCT-TGTCAGCTTTGACCCTAGAGACTTCTTCCCTT-
* *
106077 TAAGTCTGTCTATCGACTTTGACCCTAGAGACTTATTCACCCTT
128 TAAGTCTGCCTGTCGACTTTGACCCTAGAGACTTATTCA-CCTT
* *
106121 AAGTCTG-TCTGTCGGCTTTGACCCTAGAGACTTTCTTCACCCTTAAGTCTGCTTGTCAACTTTA
1 AAGTCTGCT-TGTCGGCTTTGACCCTAGAGAC-TTCTTCACCCTTAAGTCTGCTTGTCGACTTTG
*
106185 ACCTTGGAGACTTCTTCACCCTT
64 ACCCTGGAGACTTCTTCACCCTT
106208 TGTCTGCCTA
Statistics
Matches: 484, Mismatches: 92, Indels: 46
0.78 0.15 0.07
Matches are distributed among these distances:
169 6 0.01
170 70 0.14
171 354 0.73
172 45 0.09
173 3 0.01
174 6 0.01
ACGTcount: A:0.18, C:0.27, G:0.17, T:0.37
Consensus pattern (170 bp):
AAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTCACCCTTAAGTCTGCTTGTCGACTTTGAC
CCTGGAGACTTCTTCACCCTTAAGTCTGCTTGTCAGCTTTGACCCTAGAGACTTCTTCCCTTTAA
GTCTGCCTGTCGACTTTGACCCTAGAGACTTATTCACCTT
Found at i:106291 original size:42 final size:42
Alignment explanation
Indices: 106190--106664 Score: 336
Period size: 42 Copynumber: 11.4 Consensus size: 42
106180 CTTTAACCTT
* * * ** * * **
106190 GGAGACTTCTTCACCCTTTGTCTGCCTATCGGTTTAGACTTG
1 GGAGACTTCTTCATCATTCGTCTGCCCGTCGGCTCAGACCCG
* * *
106232 GGAGACTTTCTTCATCATTCGTTTACCCGTTGGCTCAGACCCG
1 GGAGAC-TTCTTCATCATTCGTCTGCCCGTCGGCTCAGACCCG
* * * *
106275 GGAGACTTCTTCATCATTCGTTTGCCCGTCGACTCAGATCCA
1 GGAGACTTCTTCATCATTCGTCTGCCCGTCGGCTCAGACCCG
* * * * *
106317 AGAGACTTCTTCATCATTTGTCTGCCTGTTGGCTTC-GA-CCT
1 GGAGACTTCTTCATCATTCGTCTGCCCGTCGGC-TCAGACCCG
* *
106358 GGAGA---CTTCATCGA-TCGTCTGCTCATCGGCTCAGACCCG
1 GGAGACTTCTTCATC-ATTCGTCTGCCCGTCGGCTCAGACCCG
* **
106397 GGAGACTTCTTCATCATTTGTCTGCTAGTCGGCTCAGACCCG
1 GGAGACTTCTTCATCATTCGTCTGCCCGTCGGCTCAGACCCG
* * ** *
106439 AGAGACTTCTTCATCATTTGTCTGCTAGTCGGCTCAAACCCG
1 GGAGACTTCTTCATCATTCGTCTGCCCGTCGGCTCAGACCCG
* * * * * * *
106481 AGAGACTTCTTCATCATTCATCTGCCCATCAGCTTAAACTCG
1 GGAGACTTCTTCATCATTCGTCTGCCCGTCGGCTCAGACCCG
* * * * * *
106523 GGAGATTTCTTCATCCACT-GTCTACCCCTCGGCTTAGACTCG
1 GGAGACTTCTTCAT-CATTCGTCTGCCCGTCGGCTCAGACCCG
* * * * * * *
106565 AGAGACTTTCTTTATTAATCGTCTGCCCATTGGCTTAGA-CCG
1 GGAGAC-TTCTTCATCATTCGTCTGCCCGTCGGCTCAGACCCG
* * * *
106607 GAGAGACTTCTTCATCTTTCATCTGCCCGTCGGCTCAAACTCG
1 G-GAGACTTCTTCATCATTCGTCTGCCCGTCGGCTCAGACCCG
*
106650 AGAGACTTCTTCATC
1 GGAGACTTCTTCATC
106665 TCTTTGTTTG
Statistics
Matches: 346, Mismatches: 73, Indels: 28
0.77 0.16 0.06
Matches are distributed among these distances:
37 2 0.01
38 20 0.06
39 8 0.02
41 7 0.02
42 244 0.71
43 65 0.19
ACGTcount: A:0.19, C:0.29, G:0.20, T:0.32
Consensus pattern (42 bp):
GGAGACTTCTTCATCATTCGTCTGCCCGTCGGCTCAGACCCG
Found at i:106403 original size:80 final size:82
Alignment explanation
Indices: 106263--106498 Score: 241
Period size: 80 Copynumber: 2.9 Consensus size: 82
106253 TTTACCCGTT
* * ** * * * *
106263 GGCTCAGACCCGGGAGACTTCTTCATCATTCGTTTGCCCGTCGACTCAGATCCAAGAGACTTCTT
1 GGCTCAGACCCGAGAGA--TCTTCATCATTCGTCTGCTAGTCGGCTCAAACCCGAGAGACTTCTT
*
106328 CATCATTTGTCTGCCT-GTT
64 CATCATTTGTCTG-CTAGTC
* * *
106347 GGCTTC-GACCTG-GAGA-CTTCATCGA-TCGTCTGCTCA-TCGGCTCAGACCCGGGAGACTTCT
1 GGC-TCAGACCCGAGAGATCTTCATC-ATTCGTCTGCT-AGTCGGCTCAAACCCGAGAGACTTCT
106407 TCATCATTTGTCTGCTAGTC
63 TCATCATTTGTCTGCTAGTC
*
106427 GGCTCAGACCCGAGAGACTTCTTCATCATTTGTCTGCTAGTCGGCTCAAACCCGAGAGACTTCTT
1 GGCTCAGACCCGAGAGA--TCTTCATCATTCGTCTGCTAGTCGGCTCAAACCCGAGAGACTTCTT
106492 CATCATT
64 CATCATT
106499 CATCTGCCCA
Statistics
Matches: 128, Mismatches: 13, Indels: 22
0.79 0.08 0.13
Matches are distributed among these distances:
79 4 0.03
80 58 0.45
81 5 0.04
83 6 0.05
84 53 0.41
85 2 0.02
ACGTcount: A:0.19, C:0.30, G:0.21, T:0.31
Consensus pattern (82 bp):
GGCTCAGACCCGAGAGATCTTCATCATTCGTCTGCTAGTCGGCTCAAACCCGAGAGACTTCTTCA
TCATTTGTCTGCTAGTC
Found at i:107159 original size:83 final size:83
Alignment explanation
Indices: 107004--107165 Score: 211
Period size: 83 Copynumber: 1.9 Consensus size: 83
106994 TTTTTATATT
* * *
107004 TTATTGACTTGTCGGTCCAATCCCGATCAACTTCTTTATCCTTTATTTACTTATCAACTTAGTCT
1 TTATTGACTTATCGGTCCAATCCAGATCAAC-TCTTTATCCTTTATTTACTTATCAACTTAGTCC
*
107069 CGGGTAAATCTTTTGTCCA
65 CGAGTAAATCTTTTGTCCA
* * * *
107088 TTATTGACTTATCGGTTCAATCTCAG-TCAAC-CTTTCATCCTTTGTTTACTTTTCAGCTTAGTC
1 TTATTGACTTATCGGTCCAATC-CAGATCAACTCTTT-ATCCTTTATTTACTTATCAACTTAGTC
107151 CCGAGTAAATCTTTT
64 CCGAGTAAATCTTTT
107166 TATTTTTTGT
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
82 4 0.06
83 37 0.54
84 25 0.37
85 2 0.03
ACGTcount: A:0.21, C:0.23, G:0.12, T:0.44
Consensus pattern (83 bp):
TTATTGACTTATCGGTCCAATCCAGATCAACTCTTTATCCTTTATTTACTTATCAACTTAGTCCC
GAGTAAATCTTTTGTCCA
Found at i:108340 original size:13 final size:13
Alignment explanation
Indices: 108322--108346 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
108312 CTGTTCTGTA
108322 AATTTTTCGAGGG
1 AATTTTTCGAGGG
108335 AATTTTTCGAGG
1 AATTTTTCGAGG
108347 TTTTCAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.28, T:0.40
Consensus pattern (13 bp):
AATTTTTCGAGGG
Found at i:108612 original size:13 final size:13
Alignment explanation
Indices: 108594--108635 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
108584 TTTTATCTTA
108594 ATTTTTA-AATTTT
1 ATTTTTATAA-TTT
108607 ATTTTTATAATTT
1 ATTTTTATAATTT
* *
108620 ATTTTTTTTATTT
1 ATTTTTATAATTT
108633 ATT
1 ATT
108636 AATTTTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 24 0.92
14 2 0.08
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
ATTTTTATAATTT
Found at i:108649 original size:17 final size:15
Alignment explanation
Indices: 108605--108655 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
108595 TTTTTAAATT
108605 TTATTTTTATAATTTA
1 TTATTTTTAT-ATTTA
108621 TT-TTTTT-TATTTA
1 TTATTTTTATATTTA
108634 TTAATTTTTATGATTTAA
1 TT-ATTTTTAT-ATTT-A
108652 TTAT
1 TTAT
108656 ACAAATTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
13 7 0.23
14 1 0.03
15 10 0.33
16 3 0.10
17 6 0.20
18 3 0.10
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
TTATTTTTATATTTA
Found at i:109479 original size:22 final size:22
Alignment explanation
Indices: 109427--109479 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
109417 GATCGCAACT
* *
109427 ACAGCAGCAGGAAGCAACGCAA
1 ACAGCAACCGGAAGCAACGCAA
109449 ACAGCAACCGGAAGCAACGCAA
1 ACAGCAACCGGAAGCAACGCAA
109471 ACAGCAACC
1 ACAGCAACC
109480 ATCAGCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.45, C:0.32, G:0.23, T:0.00
Consensus pattern (22 bp):
ACAGCAACCGGAAGCAACGCAA
Found at i:109850 original size:18 final size:17
Alignment explanation
Indices: 109820--109878 Score: 82
Period size: 17 Copynumber: 3.4 Consensus size: 17
109810 AAGAAAAAAA
109820 CCATGGATCTTTTTAATT
1 CCAT-GATCTTTTTAATT
109838 CCATGATCTTTTTAATT
1 CCATGATCTTTTTAATT
**
109855 CCATGAAATTTCTTAATT
1 CCATGATCTTT-TTAATT
109873 CCATGA
1 CCATGA
109879 AAATTCATGA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
17 22 0.58
18 16 0.42
ACGTcount: A:0.27, C:0.19, G:0.08, T:0.46
Consensus pattern (17 bp):
CCATGATCTTTTTAATT
Found at i:116324 original size:657 final size:658
Alignment explanation
Indices: 110006--117247 Score: 14370
Period size: 658 Copynumber: 11.0 Consensus size: 658
109996 TTGTTGTTGT
110006 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
1 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
110071 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
66 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
110136 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
131 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
110201 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
196 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
110266 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
261 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
110331 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
326 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
110396 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
391 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
110461 TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTAA
456 TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTAA
*
110526 TTTGCGAATTTAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAAA
521 TTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAAA
110591 GATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTTG
586 GATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTTG
110656 ATGCTTAA
651 ATGCTTAA
110664 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
1 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
110729 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
66 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
110794 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
131 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
110859 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
196 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
110924 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
261 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
110989 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
326 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
111054 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
391 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
111119 TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTAA
456 TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTAA
111184 TTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAAA
521 TTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAAA
*
111249 TATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTTG
586 GATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTTG
111314 ATGCTTAA
651 ATGCTTAA
111322 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
1 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
111387 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
66 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
111452 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
131 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
111517 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
196 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
111582 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
261 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
111647 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
326 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
111712 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
391 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
111777 TTTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTA
456 -TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTA
111842 ATTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAA
520 ATTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAA
111907 AGATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTT
585 AGATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTT
111972 GATGCTTAA
650 GATGCTTAA
111981 TTTTGTGGTTA-TTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
1 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
112045 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
66 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
112110 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
131 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
112175 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
196 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
112240 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
261 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
112305 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
326 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
*
112370 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGAATGA
391 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
112435 TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTAA
456 TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTAA
*
112500 TTTGCGAATTTAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAAA
521 TTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAAA
112565 GATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTTG
586 GATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTTG
112630 ATGCTTAA
651 ATGCTTAA
112638 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
1 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
112703 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
66 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
112768 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
131 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
112833 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
196 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
112898 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
261 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
112963 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
326 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
113028 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
391 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
113093 TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTAA
456 TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTAA
113158 TTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAAA
521 TTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAAA
*
113223 TATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTTG
586 GATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTTG
113288 ATGCTTAA
651 ATGCTTAA
113296 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
1 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
113361 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
66 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
113426 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
131 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
113491 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
196 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
113556 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
261 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
113621 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
326 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
113686 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
391 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
113751 TTTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTA
456 -TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTA
113816 ATTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAA
520 ATTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAA
113881 AGATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTT
585 AGATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTT
113946 GATGCTTAA
650 GATGCTTAA
113955 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
1 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
114020 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
66 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
114085 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
131 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
114150 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
196 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
114215 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
261 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
114280 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
326 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
114345 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
391 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
114410 TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTAA
456 TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTAA
114475 TTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAAA
521 TTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAAA
114540 GATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTTG
586 GATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTTG
114605 ATGCTTAA
651 ATGCTTAA
114613 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
1 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
114678 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
66 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
114743 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
131 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
114808 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
196 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
114873 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
261 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
114938 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
326 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
115003 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
391 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
115068 TTTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTA
456 -TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTA
115133 ATTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAA
520 ATTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAA
115198 AGATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTT
585 AGATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTT
115263 GATGCTTAA
650 GATGCTTAA
115272 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
1 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
115337 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
66 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
115402 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
131 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
115467 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
196 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
115532 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
261 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
115597 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
326 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
115662 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
391 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
115727 -TTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTAA
456 TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTAA
115791 TTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAAA
521 TTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAAA
115856 GATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTTG
586 GATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTTG
115921 ATGCTTAA
651 ATGCTTAA
115929 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
1 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
115994 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
66 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
116059 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
131 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
116124 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
196 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
116189 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
261 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
116254 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
326 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
116319 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAA----TCTTGTAATTCTTGGTATGA
391 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
116380 TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTAA
456 TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTAA
116445 TTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAAA
521 TTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAAA
116510 GATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTTG
586 GATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTTG
116575 ATGCTTAA
651 ATGCTTAA
116583 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
1 TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
116648 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
66 TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
116713 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
131 TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
116778 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
196 CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
116843 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
261 GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
116908 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
326 CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
116973 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
391 ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
117038 TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTAA
456 TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTAA
117103 TTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAAA
521 TTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAAA
117168 GATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTTG
586 GATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTTG
117233 ATGCTTAA
651 ATGCTTAA
117241 TTTTGTG
1 TTTTGTG
117248 TTTTTATTTG
Statistics
Matches: 6566, Mismatches: 9, Indels: 18
1.00 0.00 0.00
Matches are distributed among these distances:
653 20 0.00
654 633 0.10
657 846 0.13
658 3539 0.54
659 1528 0.23
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.42
Consensus pattern (658 bp):
TTTTGTGGTTATTTTGTAAATATAAAAACTATAGGCACTAAAATGCCAAAAAAACACAAAAATTT
TCTTTTGAGATTTTTGCTTGGTCGAATTTGTTGGGGGCTGATTATGATGATCTGCTGTTGATTTT
TGCTTGAATTTAATATTTGTTAAGAGATTTAATAATTTTTGTAAACATAGGGACTAAAGTGCAAA
CATTAGAAAGTTTAAGGACTAATATACAATTTTTGCAAAATTTATTGTAAAAGATGTTAGCCTTG
GCTGAATGCTTCTAAGTAGTCCTTAGAATGTATTCACATGCTTTCAATGTATTTTGATGCATTTT
CAAACATTTTTGAGTGTTTAGGATCTTTTTATAATTTTAAAAAGTTTAGGGGTTTAATTGCAAAT
ATTAGAAAATATTGTTCCTAGGCCAAAAATTCTTGACCGAATCTTTCTTGTAATTCTTGGTATGA
TTTTTTTTTGTGTCGATTATGATATTTTTGATGTTTACTTTGTATTTTAGTTATGTAAGGACTAA
TTTGCGAATTCAAGAAAGTTTGGGGATTTACGTGTAAATATTGGAAAATTTGTCCCAAGGCCAAA
GATCATCGACCAAATCTTCTTCATAATTTTTGGATCTGATTTGTGTGCTAATTTCGATTTATTTG
ATGCTTAA
Found at i:118098 original size:157 final size:156
Alignment explanation
Indices: 117930--118231 Score: 392
Period size: 157 Copynumber: 1.9 Consensus size: 156
117920 AACTGAGTCT
* * *
117930 TAGGTTATCACCAGGTCCTCTTTTATGCTGAAGGTAGG-CATTTAAGATAGGTTCATCCCCTT-T
1 TAGGTTATCACCAGGTCCGCTTTCATGCCGAAGGT-GGACATTTAAGATAGGTTCA-CCCCTTCT
* * *
117993 AAAATGCTTTTTAAGTCCTTTAGGGGTACCGGGAAACTTTCATGTCGAAACTATACCCTTAGAGG
64 AAAATGCTTTTTAAGTCCTTTAGGGGTACCAGGAAACTCTCACGTCGAAACTAT-CCCTTAGAGG
*
118058 CATTTTCATAATTTTTCAGAATTATATCC
128 CATTTTCATAAATTTTCAGAATTATATCC
* * * * *
118087 TAGGTTGTCACCATGTCCGCTTTCATGCCGAAGGTGGATATTTAGGATAGGTTCACCCCTTCTAT
1 TAGGTTATCACCAGGTCCGCTTTCATGCCGAAGGTGGACATTTAAGATAGGTTCACCCCTTCTAA
* ** * ** *
118152 AGTTTTTTTTAAGTCCTTTAGGGGTACCAGGATACTCTCACGTCGAAGGTATCCCTTAGGGGCAT
66 AATGCTTTTTAAGTCCTTTAGGGGTACCAGGAAACTCTCACGTCGAAACTATCCCTTAGAGGCAT
118217 TTTCATAAATTTTCA
131 TTTCATAAATTTTCA
118232 AAGCCGAGTC
Statistics
Matches: 124, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
156 34 0.27
157 90 0.73
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (156 bp):
TAGGTTATCACCAGGTCCGCTTTCATGCCGAAGGTGGACATTTAAGATAGGTTCACCCCTTCTAA
AATGCTTTTTAAGTCCTTTAGGGGTACCAGGAAACTCTCACGTCGAAACTATCCCTTAGAGGCAT
TTTCATAAATTTTCAGAATTATATCC
Found at i:118285 original size:156 final size:157
Alignment explanation
Indices: 117902--118480 Score: 412
Period size: 156 Copynumber: 3.7 Consensus size: 157
117892 CCCTAGAAGT
* * * * * *
117902 ATTTTCGT-AATTCTTCAGAA-CTGAGTCTTAGGTTATCACCAGG-TCCTCTTTTATGCTGAAGG
1 ATTTTCATAAATT-TTCAGAAGCAGAGTCCTAGGTTATCACCAGGTTCAT-TTTTATTCCGAAGG
* * * * * * *
117964 TAGGCATTTAAGATAGGTTCATCCCCTT-TAAAATGCTTTTTAAGTCCTTTAGGGGTACCGGGAA
64 TGGGTATTTAGGATAGGTTCA-CCCCTTCTATAGTTCTTTTTAAGTCCTTTAGGGGTACC-GGAT
* *
118028 ACTTTCATGTCGAAACTATACCCTTAGAGGC
127 ACTCTCACGTCGAAACTATACCCTTAGAGGC
* ** * * * * ** * *
118059 ATTTTCATAATTTTTCAGAATTATA-TCCTAGGTTGTCACCATGTCCGCTTTCATGCCGAAGGTG
1 ATTTTCATAAATTTTCAGAAGCAGAGTCCTAGGTTATCACCAGGTTCATTTTTATTCCGAAGGTG
* *
118123 GATATTTAGGATAGGTTCACCCCTTCTATAGTTTTTTTTAAGTCCTTTAGGGGTACCAGGATACT
66 GGTATTTAGGATAGGTTCACCCCTTCTATAGTTCTTTTTAAGTCCTTTAGGGGTACC-GGATACT
** *
118188 CTCACGTCGAAGGTAT-CCCTTAGGGGC
130 CTCACGTCGAAACTATACCCTTAGAGGC
* * * *
118215 ATTTTCATAAATTTTCA-AAGCCGAGTCGTAGGTTATCACCAGGTTCATTTTTATTTCGAAGGCG
1 ATTTTCATAAATTTTCAGAAGCAGAGTCCTAGGTTATCACCAGGTTCATTTTTATTCCGAAGGTG
* * * * *
118279 GGTATTTAGGATACGTTCATCCCTTCTCTAG-TCTTTATAAGTCCTTTAGGGTTACCGGAATACT
66 GGTATTTAGGATAGGTTCACCCCTTCTATAGTTCTTTTTAAGTCCTTTAGGGGTACCGG-ATACT
* * * * * * *
118343 TTTACATC-AAAGGTATACTCGTAGAGAC
130 CTCACGTCGAAA-CTATACCCTTAGAGGC
* * * * * * * ** * *
118371 ATTTTCGT-AATTTTCTATAA-CCGAGTCCTTGGTTGTCATCGGGACCACTTTTATGT-TGAAGG
1 ATTTTCATAAATTTTC-AGAAGCAGAGTCCTAGGTTATCACCAGGTTCATTTTTAT-TCCGAAGG
* * * *
118433 TGGGCATTTAGGATAGGTTCATCCCATCT-T-CTGTCTTTTTAAGTCCTT
64 TGGGTATTTAGGATAGGTTCACCCCTTCTATAGT-TCTTTTTAAGTCCTT
118481 CAGGATTGCT
Statistics
Matches: 335, Mismatches: 74, Indels: 27
0.77 0.17 0.06
Matches are distributed among these distances:
154 4 0.01
155 47 0.14
156 173 0.52
157 106 0.32
158 5 0.01
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (157 bp):
ATTTTCATAAATTTTCAGAAGCAGAGTCCTAGGTTATCACCAGGTTCATTTTTATTCCGAAGGTG
GGTATTTAGGATAGGTTCACCCCTTCTATAGTTCTTTTTAAGTCCTTTAGGGGTACCGGATACTC
TCACGTCGAAACTATACCCTTAGAGGC
Found at i:118589 original size:156 final size:156
Alignment explanation
Indices: 118263--118592 Score: 367
Period size: 156 Copynumber: 2.1 Consensus size: 156
118253 CCAGGTTCAT
* * * * *
118263 TTTTATTTCGAAGGCGGGTATTTAGGATACGTTCATCCCTTCTCTAGTCTTTATAAGTCCTTTAG
1 TTTTATGTCGAAGGTGGGCATTTAGGATACGTTCATCCCATCTCTAGTCTTTATAAGTCCTTCAG
* * *
118328 GGTTACCGGAATACTTTTACATCAAAGGTATACTCGTAGAGACATTTTCGTAATTTTCTATAACC
66 GATTACCGGAATACTTTTACATCAAAGGTATACTCATAGAGACATTTTCGTAATTTTCTAGAACC
* * * *
118393 GAGTCCTTGGTTGTCATCGGGACCAC
131 AACTCCTAGGTCGTCATCGGGACCAC
* * *
118419 TTTTATGTTGAAGGTGGGCATTTAGGATAGGTTCATCCCATCTTCT-GTCTTTTTAAGTCCTTCA
1 TTTTATGTCGAAGGTGGGCATTTAGGATACGTTCATCCCATC-TCTAGTCTTTATAAGTCCTTCA
* * ** * * * * * *
118483 GGATTGCTGGGGTACTTTTACGTCGAAGGTATACTCATCGAGGCATTTTTGTAATTTTTTAGAAC
65 GGATTACCGGAATACTTTTACATCAAAGGTATACTCATAGAGACATTTTCGTAATTTTCTAGAAC
* **
118548 CAACTCCTAGGTCGTCA-CTGGGTCTGC
130 CAACTCCTAGGTCGTCATC-GGGACCAC
*
118575 TTTTATGTCAAAGGTGGG
1 TTTTATGTCGAAGGTGGG
118593 TTGTTAGGGT
Statistics
Matches: 142, Mismatches: 30, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
155 1 0.01
156 138 0.97
157 3 0.02
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (156 bp):
TTTTATGTCGAAGGTGGGCATTTAGGATACGTTCATCCCATCTCTAGTCTTTATAAGTCCTTCAG
GATTACCGGAATACTTTTACATCAAAGGTATACTCATAGAGACATTTTCGTAATTTTCTAGAACC
AACTCCTAGGTCGTCATCGGGACCAC
Found at i:118925 original size:156 final size:155
Alignment explanation
Indices: 118641--118983 Score: 424
Period size: 156 Copynumber: 2.2 Consensus size: 155
118631 GTTCTTTAGG
* * * * * **
118641 GGTATCCCTTAGGGGTATTTTCGTAATTTTTTAAAACCGAGTCTTA-GG-TTGTCAGCGAGTCCA
1 GGTATCCCTTAGGGGCATTTTCGTAATTTTTTAGAACCAACTCCTAGGGATTACCA--G-GTCCA
* * *
118704 CTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTGATCACCATTTCTAGTCTTTTTAAGTCCTTT
63 CTTTTATGCTGAAGGTGGGCATTTAGGATAGCTTCATCACCATTTATAGTCTTTTTAAGTCCTTT
* * **
118769 AAGGTTGTCGGGATACTTTTATGTCGAA
128 AAGGCTGTCGAGATACTTTTACATCGAA
* *
118797 GGTATACCCTTAGGGGCATTTTGGTAATTTTTTAGAACCAACTCCTAGGGATTACCAGGTCCGCT
1 GGTAT-CCCTTAGGGGCATTTTCGTAATTTTTTAGAACCAACTCCTAGGGATTACCAGGTCCACT
*
118862 TTTATG-TCGAAGGTGGGCATTTAGGATAGCTTCATC-CCTTTTATGAGTCTTTTTAAGTCCTTT
65 TTTATGCT-GAAGGTGGGCATTTAGGATAGCTTCATCACCATTTAT-AGTCTTTTTAAGTCCTTT
* *
118925 AGGGCTGTCTAGATACTTTTACATCGAA
128 AAGGCTGTCGAGATACTTTTACATCGAA
*
118953 GGTATCCCTTAGGGGCATTTTCGTTATTTTT
1 GGTATCCCTTAGGGGCATTTTCGTAATTTTT
118984 CTTGAACTTA
Statistics
Matches: 161, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
155 31 0.19
156 88 0.55
157 36 0.22
158 2 0.01
159 4 0.02
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.39
Consensus pattern (155 bp):
GGTATCCCTTAGGGGCATTTTCGTAATTTTTTAGAACCAACTCCTAGGGATTACCAGGTCCACTT
TTATGCTGAAGGTGGGCATTTAGGATAGCTTCATCACCATTTATAGTCTTTTTAAGTCCTTTAAG
GCTGTCGAGATACTTTTACATCGAA
Found at i:118927 original size:287 final size:285
Alignment explanation
Indices: 118371--118928 Score: 716
Period size: 286 Copynumber: 1.9 Consensus size: 285
118361 TCGTAGAGAC
* * * *
118371 ATTTTCGTAATTTTCTATAACCGAGTCCTTGGTTGTCATCGGGACCACTTTTATGTTGAAGGTGG
1 ATTTTCGTAATTTTCTAAAACCGAGTCCTTGGTTGTCAGCGAGACCACTTTTATGCTGAAGGTGG
* *
118436 GCATTTAGGATAGGTTCATCCCATCTTCTGTCTTTTTAAGTCCTTCAGGATTGCTGGGGTACTTT
66 GCATTTAGGATAGGTTCATCCCATCTTCTGTCTTTTTAAGTCCTTAAGGATTGCTGGGATACTTT
* * *
118501 TACGTCGAAGGTATACTCATCGAGGCATTTTTGTAATTTTTTAGAACCAACTCCTAGGTCGTCAC
131 TACGTCGAAGGTATACCCATAGAGGCATTTTGGTAATTTTTTAGAACCAACTCCTAGG-CGTCAC
** * * * * **
118566 TGGGTCTGCTTTTATGTCAAAGGTGGGTTGTTAGGGTAGGTTTGTCCCATTTCAAACCTTTTTAA
195 CAGGTCCGCTTTTATGTCAAAGGTGGGATGTTAGGATAGCTTCATCCCATTTCAAACCTTTTTAA
*
118631 GTTCTTTAGGGGTATCCCTTAGGGGT
260 GTCCTTTAGGGGTATCCCTTAGGGGT
* *
118657 ATTTTCGTAATTTTTTAAAACCGAGT-CTTAGGTTGTCAGCGAGTCCACTTTTATGCTGAAGGTG
1 ATTTTCGTAATTTTCTAAAACCGAGTCCTT-GGTTGTCAGCGAGACCACTTTTATGCTGAAGGTG
*
118721 GGCATTTAGGATAGGTTGATCACCAT-TTCTAGTCTTTTTAAGTCCTTTAAGG-TTG-TCGGGAT
65 GGCATTTAGGATAGGTTCATC-CCATCTTCT-GTCTTTTTAAGTCC-TTAAGGATTGCT-GGGAT
* * *
118783 ACTTTTATGTCGAAGGTATACCCTTAGGGGCATTTTGGTAATTTTTTAGAACCAACTCCTAGG-G
126 ACTTTTACGTCGAAGGTATACCCATAGAGGCATTTTGGTAATTTTTTAGAACCAACTCCTAGGCG
* * * **
118847 ATTACCAGGTCCGCTTTTATGTCGAAGGTGGGCAT-TTAGGATAGCTTCATCCC-TTTTATGAGT
191 -TCACCAGGTCCGCTTTTATGTCAAAGGTGGG-ATGTTAGGATAGCTTCATCCCATTTCA--AAC
118910 CTTTTTAAGTCCTTTAGGG
252 CTTTTTAAGTCCTTTAGGG
118929 CTGTCTAGAT
Statistics
Matches: 234, Mismatches: 29, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
285 8 0.03
286 119 0.51
287 102 0.44
288 5 0.02
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.39
Consensus pattern (285 bp):
ATTTTCGTAATTTTCTAAAACCGAGTCCTTGGTTGTCAGCGAGACCACTTTTATGCTGAAGGTGG
GCATTTAGGATAGGTTCATCCCATCTTCTGTCTTTTTAAGTCCTTAAGGATTGCTGGGATACTTT
TACGTCGAAGGTATACCCATAGAGGCATTTTGGTAATTTTTTAGAACCAACTCCTAGGCGTCACC
AGGTCCGCTTTTATGTCAAAGGTGGGATGTTAGGATAGCTTCATCCCATTTCAAACCTTTTTAAG
TCCTTTAGGGGTATCCCTTAGGGGT
Found at i:125128 original size:114 final size:114
Alignment explanation
Indices: 124928--125155 Score: 447
Period size: 114 Copynumber: 2.0 Consensus size: 114
124918 ATGATCCTCT
124928 CATCCTAAATTATATGTGTTTAAGAAAGAATCATAGCTGTATTGTTGGCCTAAGAATCCACTTAT
1 CATCCTAAATTATATGTGTTTAAGAAAGAATCATAGCTGTATTGTTGGCCTAAGAATCCACTTAT
124993 GGCATTAACCTGCTTATTTGGACCATCTTGAAGTATTAGACACATATAA
66 GGCATTAACCTGCTTATTTGGACCATCTTGAAGTATTAGACACATATAA
*
125042 CATCCTAAATTATATGTGTTTAAGAAAGGATCATAGCTGTATTGTTGGCCTAAGAATCCACTTAT
1 CATCCTAAATTATATGTGTTTAAGAAAGAATCATAGCTGTATTGTTGGCCTAAGAATCCACTTAT
125107 GGCATTAACCTGCTTATTTGGACCATCTTGAAGTATTAGACACATATAA
66 GGCATTAACCTGCTTATTTGGACCATCTTGAAGTATTAGACACATATAA
125156 ATTATGTGTC
Statistics
Matches: 113, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 113 1.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (114 bp):
CATCCTAAATTATATGTGTTTAAGAAAGAATCATAGCTGTATTGTTGGCCTAAGAATCCACTTAT
GGCATTAACCTGCTTATTTGGACCATCTTGAAGTATTAGACACATATAA
Found at i:128480 original size:11 final size:10
Alignment explanation
Indices: 128450--128476 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
128440 AAATGGCATG
128450 AAAAATGAAA
1 AAAAATGAAA
128460 AAAAATGAAA
1 AAAAATGAAA
128470 AAAAATG
1 AAAAATG
128477 GAAATTTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (10 bp):
AAAAATGAAA
Found at i:128597 original size:14 final size:13
Alignment explanation
Indices: 128578--128630 Score: 56
Period size: 13 Copynumber: 4.1 Consensus size: 13
128568 GCTTTGAGAA
128578 AGAGAAGAAAAAAG
1 AGAGAA-AAAAAAG
128592 AGAGAAAAAAAA-
1 AGAGAAAAAAAAG
*
128604 AGAGGAAAAACAA-
1 AGA-GAAAAAAAAG
*
128617 AGAGAAAAATAAG
1 AGAGAAAAAAAAG
128630 A
1 A
128631 AAATCAAGTC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
12 11 0.31
13 18 0.51
14 6 0.17
ACGTcount: A:0.74, C:0.02, G:0.23, T:0.02
Consensus pattern (13 bp):
AGAGAAAAAAAAG
Found at i:128630 original size:11 final size:11
Alignment explanation
Indices: 128583--128630 Score: 51
Period size: 12 Copynumber: 4.1 Consensus size: 11
128573 GAGAAAGAGA
*
128583 AGAAAAAAGAG
1 AGAAAAAAAAG
128594 AGAAAAAAAAAG
1 AG-AAAAAAAAG
128606 AGGAAAAACAAAG
1 A-GAAAAA-AAAG
*
128619 AGAAAAATAAG
1 AGAAAAAAAAG
128630 A
1 A
128631 AAATCAAGTC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
11 6 0.19
12 20 0.62
13 6 0.19
ACGTcount: A:0.75, C:0.02, G:0.21, T:0.02
Consensus pattern (11 bp):
AGAAAAAAAAG
Found at i:129856 original size:15 final size:16
Alignment explanation
Indices: 129831--129860 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
129821 ATTTTTAATA
129831 AAATAAAATAAAAATT
1 AAATAAAATAAAAATT
129847 AAAT-AAATAAAAAT
1 AAATAAAATAAAAAT
129861 CAAAATAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AAATAAAATAAAAATT
Found at i:129859 original size:21 final size:21
Alignment explanation
Indices: 129831--129883 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
129821 ATTTTTAATA
129831 AAAT-AAAATAAAAATTAA-AT
1 AAATAAAAATAAAAA-TAACAT
*
129851 AAATAAAAATCAAAATAACAT
1 AAATAAAAATAAAAATAACAT
* *
129872 GAATAAATATAA
1 AAATAAAAATAA
129884 CCTTTTAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 7 0.26
21 20 0.74
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.23
Consensus pattern (21 bp):
AAATAAAAATAAAAATAACAT
Found at i:129866 original size:16 final size:15
Alignment explanation
Indices: 129827--129868 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
129817 AACAATTTTT
129827 AATAAAATAAAATAAA
1 AATAAAAT-AAATAAA
*
129843 AATTAAATAAATAAA
1 AATAAAATAAATAAA
129858 AATCAAAATAA
1 AAT-AAAATAA
129869 CATGAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.21
Consensus pattern (15 bp):
AATAAAATAAATAAA
Found at i:136233 original size:80 final size:79
Alignment explanation
Indices: 136134--136500 Score: 350
Period size: 80 Copynumber: 4.6 Consensus size: 79
136124 GAAGATGATG
* *
136134 GGGTTGGAGTATCCCCAAAGATGAAGAATTCGGTATTGTGGAAGTAAAAATAGGGTTGGAGTATC
1 GGGTTGGAGTATCCCCAAAGATGAAAAATTTGGTATTGTGGAAGTAAAAATAGGGTTGGAGTATC
* *
136199 CCTTCAGAGGTGGT
66 CCTTCAGAGATAGT
* *
136213 AGGGTTGGAGTATCCCCAAAGAT-AAAGAATTTGATATTGTGGAAGAAAAAATAGGGTTGGAGTA
1 -GGGTTGGAGTATCCCCAAAGATGAAA-AATTTGGTATTGTGGAAGTAAAAATAGGGTTGGAGTA
136277 TCCCCTT-AGAGATAGT
64 T-CCCTTCAGAGATAGT
* ** * * * ** ** *
136293 GGGTTTGGAGTAT-CTCGGAGATGAAAAATTTGGTGTTTTAGTGGTAAAAGCAAGGTTGGAGTAT
1 GGG-TTGGAGTATCCCCAAAGATGAAAAATTTGGTATTGTGGAAGTAAAAATAGGGTTGGAGTAT
*
136357 CCC-TCGGAGATAGT
65 CCCTTCAGAGATAGT
* * * *
136371 GGGGTTGGAGTAT-CCCAAAAATGAAAAATTTGGTGTTTTGGAAGT-AAAATCGAGGTTGGAGTA
1 -GGGTTGGAGTATCCCCAAAGATGAAAAATTTGGTATTGTGGAAGTAAAAATAG-GGTTGGAGTA
* *
136434 TCTCTTCAGAGATGGT
64 TCCCTTCAGAGATAGT
* * * * * * *
136450 GGGATTGGAGTATCCCTAGAGATGAAAAGTTTGATGTTTTAGAAGTAAAAA
1 GGG-TTGGAGTATCCCCAAAGATGAAAAATTTGGTATTGTGGAAGTAAAAA
136501 CGGGGTTAAA
Statistics
Matches: 236, Mismatches: 40, Indels: 21
0.79 0.13 0.07
Matches are distributed among these distances:
77 4 0.02
78 61 0.26
79 60 0.25
80 102 0.43
81 9 0.04
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (79 bp):
GGGTTGGAGTATCCCCAAAGATGAAAAATTTGGTATTGTGGAAGTAAAAATAGGGTTGGAGTATC
CCTTCAGAGATAGT
Found at i:136514 original size:80 final size:78
Alignment explanation
Indices: 136107--136542 Score: 342
Period size: 80 Copynumber: 5.5 Consensus size: 78
136097 GTGAAAATTA
* * * * * * *
136107 GGTTGGAGTACTCCCTC-GAAGATGATGGGGTTGGAGTATCCCCAAAGATGAAGAATTCGGTATT
1 GGTTGGAGTA-TCCTTCAG-AGATGGTGGGGTTGGAGTAT-CCCAGAGATGAAAAATTTGATGTT
* * *
136171 GTGGAAGTAAAAATAG
63 TTAGAAGTAAAAACAG
* * * *
136187 GGTTGGAGTATCCCTTCAGAGGTGGTAGGGTTGGAGTATCCCCAAAGAT-AAAGAATTTGATATT
1 GGTTGGAGTAT-CCTTCAGAGATGGTGGGGTTGGAGTAT-CCCAGAGATGAAA-AATTTGATGTT
* * * *
136251 GTGGAAGAAAAAATAG
63 TTAGAAGTAAAAACAG
* * * * *
136267 GGTTGGAGTATCCCCTT-AGAGATAGTGGGTTTGGAGTATCTCGGAGATGAAAAATTTGGTGTTT
1 GGTTGGAGTAT--CCTTCAGAGATGGTGGGGTTGGAGTATCCCAGAGATGAAAAATTTGATGTTT
** * *
136331 TAGTGGTAAAAGCAA
64 TAGAAGTAAAAACAG
* * * * * * *
136346 GGTTGGAGTATCCCTCGGAGATAGTGGGGTTGGAGTATCCCAAAAATGAAAAATTTGGTGTTTTG
1 GGTTGGAGTATCCTTCAGAGATGGTGGGGTTGGAGTATCCCAGAGATGAAAAATTTGATGTTTTA
*
136411 GAAGTAAAATC-G
66 GAAGTAAAAACAG
* *
136423 AGGTTGGAGTATCTCTTCAGAGATGGTGGGATTGGAGTATCCCTAGAGATGAAAAGTTTGATGTT
1 -GGTTGGAGTATC-CTTCAGAGATGGTGGGGTTGGAGTATCCC-AGAGATGAAAAATTTGATGTT
*
136488 TTAGAAGTAAAAACGG
63 TTAGAAGTAAAAACAG
** * * *
136504 GGTTAAAGTATCC-CCCGAAGATGCTGGGGTTGGAGTATC
1 GGTTGGAGTATCCTTCAG-AGATGGTGGGGTTGGAGTATC
136543 TCCTTAGAGA
Statistics
Matches: 292, Mismatches: 53, Indels: 23
0.79 0.14 0.06
Matches are distributed among these distances:
77 3 0.01
78 64 0.22
79 82 0.28
80 136 0.47
81 7 0.02
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.28
Consensus pattern (78 bp):
GGTTGGAGTATCCTTCAGAGATGGTGGGGTTGGAGTATCCCAGAGATGAAAAATTTGATGTTTTA
GAAGTAAAAACAG
Found at i:136532 original size:158 final size:157
Alignment explanation
Indices: 136214--136542 Score: 378
Period size: 158 Copynumber: 2.1 Consensus size: 157
136204 AGAGGTGGTA
*
136214 GGGTTGGAGTATCCCCAAAGATAAAGAATTTGATATTGTGGAAGAAAAAATAGGGTTGGAGTATC
1 GGGTTGGAGTAT-CCCAAAAATAAAGAATTTGATATTGTGGAAGAAAAAATAGGGTTGGAGTATC
* * * * ** *
136279 CCCTTAGAGATAGTGGGTTTGGAGTATCTCGGAGATGAAAAATTTGGTGTTTTAGTGGTAAAAGC
65 CCCTTAGAGATAGTGGGATTGGAGTATCCCAGAGATGAAAAATTTGATGTTTTAGAAGTAAAAAC
** * *
136344 AAGGTTGGAGTATCCCTCGGAGATAGTG
130 AAGGTTAAAGTATCCCCCGAAGATAGTG
* * * * *
136372 GGGTTGGAGTATCCCAAAAATGAAA-AATTTGGTGTTTTGGAAG-TAAAATCGAGGTTGGAGTAT
1 GGGTTGGAGTATCCCAAAAAT-AAAGAATTTGATATTGTGGAAGAAAAAATAG-GGTTGGAGTAT
* * *
136435 -CTCTTCAGAGATGGTGGGATTGGAGTATCCCTAGAGATGAAAAGTTTGATGTTTTAGAAGTAAA
64 CCCCTT-AGAGATAGTGGGATTGGAGTATCCC-AGAGATGAAAAATTTGATGTTTTAGAAGTAAA
**
136499 AACGGGGTTAAAGTATCCCCCGAAGAT-GCTG
127 AACAAGGTTAAAGTATCCCCCGAAGATAG-TG
136530 GGGTTGGAGTATC
1 GGGTTGGAGTATC
136543 TCCTTAGAGA
Statistics
Matches: 144, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
156 10 0.07
157 57 0.40
158 77 0.53
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.29
Consensus pattern (157 bp):
GGGTTGGAGTATCCCAAAAATAAAGAATTTGATATTGTGGAAGAAAAAATAGGGTTGGAGTATCC
CCTTAGAGATAGTGGGATTGGAGTATCCCAGAGATGAAAAATTTGATGTTTTAGAAGTAAAAACA
AGGTTAAAGTATCCCCCGAAGATAGTG
Found at i:136544 original size:107 final size:108
Alignment explanation
Indices: 136424--136650 Score: 284
Period size: 107 Copynumber: 2.1 Consensus size: 108
136414 GTAAAATCGA
* * *
136424 GGTTGGAGTATCT-CTTCAGAGATGGTGG-GATTGGAGTATCCCTAGAGATGAAAAGTTT-G-AT
1 GGTTGGAGTATCTCCTT-AGAGATGGTGGAG-TTAGAGTATCCCCAGAGATGAAAAATTTAGCAT
*
136485 GTTTTAGAAGTAAAAACGGGGTTAAAGTATCC-CCCGAAGATGCTGG
64 -TTTGA-AAGTAAAAACGGGGTTAAAGTATCCTCCCGAAGATGCTGG
136531 GGTTGGAGTATCTCCTTAGAGATGGTGGAGTTAGAGTATCCCCAGAGATGAAAAATTTAGCATTT
1 GGTTGGAGTATCTCCTTAGAGATGGTGGAGTTAGAGTATCCCCAGAGATGAAAAATTTAGCATTT
* * ** * * *
136596 TGAAAGTAGAAATGGGGTTGGAGTATCCTCTCGGAGATGGTGG
66 TGAAAGTAAAAACGGGGTTAAAGTATCCTCCCGAAGATGCTGG
136639 GGTTGGAGTATC
1 GGTTGGAGTATC
136651 CCTAAAGATG
Statistics
Matches: 104, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
107 70 0.67
108 32 0.31
109 2 0.02
ACGTcount: A:0.28, C:0.11, G:0.32, T:0.29
Consensus pattern (108 bp):
GGTTGGAGTATCTCCTTAGAGATGGTGGAGTTAGAGTATCCCCAGAGATGAAAAATTTAGCATTT
TGAAAGTAAAAACGGGGTTAAAGTATCCTCCCGAAGATGCTGG
Done.