genome.fa.s1857.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1857
Parameters: 2 7 7 80 10 50 1000
Length:  16197

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1611--1661	16	3.3	15	78	10	66	3	13	13	68	1.34
1610--1654	17	2.8	17	80	10	58	4	13	15	66	1.39
1866--1892	4	6.8	4	100	0	54	48	0	0	51	1.00
1911--1974	8	8.0	8	80	19	80	25	1	0	73	0.92
1909--1964	10	5.5	10	73	26	55	26	1	0	71	0.96
1911--1974	23	2.7	23	86	11	85	25	1	0	73	0.92
1909--1974	25	2.7	25	82	17	86	25	1	0	72	0.93
1909--1974	33	2.0	33	94	5	116	25	1	0	72	0.93
2066--2278	103	2.0	104	87	5	306	38	13	17	30	1.88
5062--5354	164	1.8	159	83	5	390	55	5	9	29	1.53
6332--7429	60	18.3	59	78	6	599	40	12	23	23	1.89
6480--6590	30	3.7	30	70	7	91	36	11	23	27	1.90
6612--6709	30	3.3	30	67	16	85	38	14	20	26	1.91
6692--7099	30	13.7	29	67	13	166	41	12	24	22	1.88
6558--7123	299	1.9	300	86	1	823	40	13	23	22	1.89
6540--7245	120	5.9	120	83	1	725	40	12	23	22	1.89
6901--7183	30	9.4	30	69	11	168	40	13	25	20	1.89
8400--8442	21	2.1	20	82	4	50	9	6	4	79	1.06
8721--8786	9	7.6	9	75	11	50	9	16	1	72	1.17
8745--8785	19	2.2	19	95	4	75	9	19	0	70	1.14
11199--11576	79	4.8	79	81	3	379	37	11	21	29	1.89
13991--14046	20	2.8	20	97	0	103	30	12	10	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14864--15696	62	13.4	62	82	5	862	31	17	24	25	1.97
14927--16197	184	6.8	184	78	9	1140	31	18	25	25	1.98
15687--15714	9	3.1	9	100	0	56	25	21	42	10	1.85
15625--15777	82	1.9	82	86	5	220	28	20	28	22	1.98
15705--16197	62	8.0	62	83	4	613	31	18	24	24	1.98
15705--16196	246	2.0	247	91	2	810	31	18	24	25	1.98

Tables:   1

The End!