genome.fa.s1858.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1858
Parameters: 2 7 7 80 10 50 1000
Length:  124052

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
468--587	58	2.1	58	100	0	240	33	5	20	40	1.74
7528--7656	52	2.5	52	92	0	213	29	19	16	34	1.93
7665--7689	13	1.9	13	100	0	50	36	16	16	32	1.90
7742--7793	19	2.7	19	93	0	95	40	17	11	30	1.85
8631--8929	49	6.1	49	78	10	310	33	15	25	24	1.95
8946--9284	30	11.6	30	82	4	390	20	16	31	31	1.95
8971--9284	59	5.4	59	86	1	400	20	16	31	31	1.95
8971--9284	118	2.7	118	89	3	456	20	16	31	31	1.95
10708--10803	14	7.4	12	74	16	68	0	4	14	81	0.84
10717--10798	4	19.5	4	80	12	51	0	4	14	80	0.87
10708--10805	19	5.4	17	73	18	81	0	4	14	81	0.83
10717--10805	9	9.9	9	74	10	67	0	4	13	82	0.83
15192--15256	32	2.0	32	100	0	130	20	30	24	24	1.98
16858--16935	24	3.2	24	65	13	70	29	12	24	33	1.92
16839--16931	48	1.9	48	91	4	152	29	17	21	32	1.96
22358--22392	2	17.5	2	93	0	61	48	2	0	48	1.16
24117--24207	45	2.0	45	82	4	112	28	25	5	40	1.78
24464--24489	2	13.0	2	100	0	52	50	0	0	50	1.00
26407--26454	24	2.0	25	83	4	62	27	4	4	64	1.30
26581--26643	29	2.2	28	83	13	85	30	4	1	63	1.24
29234--29356	15	7.8	17	66	20	63	55	2	0	42	1.13
29300--29357	13	3.9	15	76	19	59	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29238--29369	31	4.3	31	73	18	82	56	2	0	40	1.11
29319--29372	17	3.2	16	79	7	54	62	0	0	37	0.95
29310--29369	14	4.1	14	70	16	50	63	0	0	36	0.95
32915--32945	6	5.3	6	96	3	55	83	0	0	16	0.64
33357--33454	42	2.3	42	84	3	126	28	9	16	45	1.78
37584--37617	16	2.2	16	89	5	52	55	2	38	2	1.30
40304--40337	17	1.9	18	94	5	61	29	2	2	64	1.22
40334--40359	5	5.2	5	100	0	52	19	0	0	80	0.71
40550--40580	2	15.5	2	100	0	62	51	0	0	48	1.00
42023--42186	29	5.7	29	82	5	170	35	4	23	36	1.74
60813--60879	33	2.0	33	88	0	98	34	11	13	40	1.81
60833--60857	13	1.9	13	100	0	50	36	16	16	32	1.90
60921--60945	13	1.9	13	100	0	50	32	16	16	36	1.90
67692--67718	4	6.8	4	100	0	54	77	22	0	0	0.76
68965--69316	28	12.5	28	82	3	384	28	29	17	24	1.97
69440--69618	48	3.8	48	91	0	279	18	27	18	34	1.95
69440--69618	95	1.9	96	89	1	279	18	27	18	34	1.95
78713--78837	40	3.1	39	77	12	128	19	21	10	48	1.78
78741--79150	40	10.2	40	72	8	226	17	21	12	49	1.79
78712--78868	80	2.0	81	79	6	176	19	21	10	48	1.79
78765--79080	120	2.6	121	78	7	340	17	21	12	49	1.78
78741--79111	80	4.6	80	75	9	274	17	21	12	49	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78967--79253	122	2.4	121	84	3	371	18	22	12	46	1.82
78999--79231	40	5.8	40	74	11	136	18	23	11	46	1.82
79036--79322	121	2.4	122	83	2	346	19	21	12	46	1.83
80717--80791	6	12.5	6	80	12	75	30	1	0	68	0.98
80707--80791	25	3.6	23	81	12	100	29	1	1	68	1.05
80739--80774	13	2.8	14	84	16	51	33	0	0	66	0.92
80725--80779	19	2.9	19	91	2	85	30	1	0	67	1.01
81293--81317	13	1.9	13	100	0	50	32	16	16	36	1.90
81418--81443	13	2.0	13	100	0	52	30	15	15	38	1.88
81398--81465	33	2.1	33	86	2	93	36	17	11	33	1.86
89069--89094	13	2.0	13	100	0	52	30	15	15	38	1.88
89049--89115	33	2.1	33	85	2	91	35	17	11	34	1.87
91250--91440	58	3.3	59	81	5	221	39	4	17	38	1.69
91250--91440	87	2.2	87	81	3	215	39	4	17	38	1.69
91250--91442	29	6.7	29	80	4	194	39	4	17	38	1.69
91298--91462	87	1.9	86	85	3	224	37	4	18	39	1.71
95023--95123	53	1.9	53	85	4	141	21	14	30	32	1.94
98902--98951	16	3.1	16	79	2	55	58	4	2	36	1.29
106014--106051	20	1.9	19	89	5	58	31	0	0	68	0.90
107145--107196	16	3.4	17	72	22	60	44	0	0	55	0.99
107161--107208	14	3.4	14	75	16	53	45	0	0	54	0.99
107128--107210	15	5.6	15	69	21	50	44	0	1	54	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107142--107210	29	2.3	30	92	2	113	44	0	0	55	0.99
107145--107196	14	3.4	16	73	26	58	44	0	0	55	0.99
107215--107252	17	2.3	17	86	4	51	36	0	0	63	0.95
107393--107437	11	4.3	11	80	8	58	33	0	0	66	0.92
107603--107667	3	21.3	3	73	14	53	64	1	1	32	1.12
107595--107670	22	3.3	22	79	13	82	67	1	1	30	1.07
107603--107669	15	4.4	14	81	9	62	65	1	1	31	1.10
107595--107671	25	3.2	24	82	12	97	67	1	1	29	1.07
111179--111336	43	3.7	41	76	11	142	32	12	18	35	1.89
115580--116086	252	2.0	252	94	1	883	35	19	11	33	1.88
117436--117475	2	21.0	2	90	10	66	50	0	0	50	1.00
117588--117645	25	2.3	26	82	5	66	50	1	0	48	1.11
119400--119520	41	3.0	41	78	0	134	41	10	13	34	1.79
123075--123139	34	1.9	34	83	0	85	29	26	12	32	1.92

Tables:   1

The End!