genome.fa.s1862.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1862
Parameters: 2 7 7 80 10 50 1000
Length:  108184

Tables:   1   

This is table  1  of  1  ( 105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77--151	20	3.8	20	78	0	87	34	13	12	40	1.81
77--154	40	2.0	39	87	2	111	34	12	12	39	1.82
14156--14224	10	6.6	10	80	14	77	86	8	2	1	0.72
14156--14224	23	3.3	19	79	18	75	86	8	2	1	0.72
14155--14212	23	2.4	23	88	5	89	89	8	1	0	0.55
14155--14214	1	60.0	1	79	0	66	90	8	1	0	0.53
15444--16884	28	49.2	28	85	8	1388	28	32	18	20	1.97
15441--16884	171	8.2	170	83	6	1537	27	32	18	20	1.97
15443--16878	314	4.5	315	89	4	1886	27	32	18	20	1.97
15444--16884	286	4.9	282	83	7	1543	28	32	18	20	1.97
20754--20828	20	3.8	20	78	0	87	34	13	12	40	1.81
20754--20831	40	2.0	39	87	2	111	34	12	12	39	1.82
27724--28415	173	4.0	170	85	8	812	25	26	21	26	1.99
27693--28415	117	6.2	115	85	8	894	25	26	21	26	1.99
29037--29063	6	4.5	6	100	0	54	55	14	0	29	1.40
29176--29267	26	3.5	26	93	0	148	50	6	30	13	1.66
29257--29409	50	3.1	50	97	0	288	45	14	25	15	1.83
29685--29874	55	3.7	55	73	17	163	32	36	22	8	1.85
29756--29851	43	2.2	43	92	0	165	33	38	20	7	1.81
29756--29866	43	2.6	43	86	0	114	33	37	21	7	1.81
30801--30921	51	2.4	51	86	6	167	30	28	11	29	1.92
30935--31260	51	6.4	50	85	4	357	28	26	12	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31192--31576	79	4.9	79	90	0	610	26	25	14	32	1.95
31508--31643	51	2.6	51	80	6	159	26	23	14	35	1.94
31508--31654	52	2.9	49	75	12	143	25	22	13	38	1.91
33155--33185	8	3.8	8	95	4	53	12	0	25	61	1.32
35249--35280	16	2.0	16	93	0	55	34	6	18	40	1.76
44205--44323	51	2.3	51	83	8	152	43	14	16	25	1.86
47605--47642	20	1.9	20	94	0	67	52	10	7	28	1.64
47713--47766	20	2.7	20	79	2	63	29	16	12	40	1.86
49282--49895	91	6.7	90	77	7	549	37	13	17	31	1.89
49417--49605	99	1.9	99	89	2	290	37	13	18	30	1.90
49542--49885	88	3.8	87	76	6	294	38	13	16	31	1.88
49306--49896	179	3.2	177	81	6	644	37	13	17	30	1.89
50838--51071	79	2.9	77	76	6	218	31	13	27	27	1.94
51028--51102	28	2.7	28	83	8	82	24	17	33	25	1.96
51085--51565	51	9.3	50	72	10	297	32	11	27	29	1.91
51125--51312	104	1.8	104	82	6	247	34	11	25	28	1.91
51340--51411	28	2.6	28	84	0	81	23	19	34	22	1.96
52704--52828	43	3.1	42	81	12	138	10	24	36	28	1.89
52756--52870	18	6.4	18	64	15	58	7	23	38	30	1.83
53142--53272	26	5.1	26	92	1	201	9	28	10	51	1.69
53377--53403	6	4.5	6	100	0	54	29	0	14	55	1.40
53960--54169	95	2.2	95	89	2	332	26	19	29	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57107--57148	14	3.1	13	90	10	66	88	11	0	0	0.53
57107--57149	21	2.0	21	95	0	77	88	11	0	0	0.52
58586--58941	30	11.8	30	79	10	277	28	29	16	25	1.97
58586--58953	59	6.2	59	75	10	239	29	29	16	25	1.96
58740--58814	35	2.2	34	82	2	96	22	32	9	36	1.86
58805--58987	28	6.3	29	86	5	205	33	27	16	21	1.95
59009--59293	52	5.9	50	78	14	319	22	27	19	30	1.98
59010--59292	95	3.0	95	94	1	487	22	27	19	30	1.98
60167--60191	13	1.9	13	100	0	50	36	16	16	32	1.90
60147--60213	33	2.0	33	88	0	98	32	11	14	40	1.83
60254--60278	13	1.9	13	100	0	50	32	16	16	36	1.90
74210--74264	1	55.0	1	77	0	56	89	10	0	0	0.50
74211--74264	11	4.6	11	86	13	81	88	11	0	0	0.50
74208--74264	24	2.4	23	91	8	96	87	12	0	0	0.54
74210--74264	18	3.2	16	83	16	74	89	10	0	0	0.50
75702--76057	30	11.8	30	79	10	277	28	29	16	25	1.97
75702--76069	59	6.2	59	75	10	239	29	29	16	25	1.96
75856--75930	35	2.2	34	82	2	96	22	32	9	36	1.86
75921--76103	28	6.3	29	86	5	205	33	27	16	21	1.95
76125--76409	52	5.9	50	77	14	310	22	27	19	30	1.98
76126--76408	95	3.0	95	93	1	478	22	27	19	30	1.98
77283--77307	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77263--77329	33	2.0	33	88	0	98	32	11	14	40	1.83
77370--77394	13	1.9	13	100	0	50	32	16	16	36	1.90
82381--82464	1	84.0	1	71	0	51	84	9	3	2	0.83
82381--82464	9	9.7	9	73	10	68	84	9	3	2	0.83
82391--82462	21	3.3	21	75	11	74	84	9	2	2	0.82
82383--82464	17	4.9	17	80	10	73	84	9	3	2	0.84
82381--82462	42	2.0	42	90	4	130	84	9	3	2	0.84
83910--84359	30	15.3	29	75	9	261	30	29	16	24	1.96
83969--84021	27	2.0	27	92	0	88	33	33	16	15	1.90
84119--84375	88	2.9	87	89	4	374	32	29	17	20	1.95
84119--84375	58	4.4	58	83	6	304	32	29	17	20	1.95
84380--84674	49	6.0	49	80	12	309	26	25	15	32	1.96
84472--84564	43	2.2	43	98	0	177	26	25	17	30	1.97
84474--84542	22	3.2	22	62	25	56	26	26	17	30	1.97
84426--84617	92	2.0	95	90	5	302	27	25	16	31	1.96
84518--84671	52	2.9	52	80	8	168	24	24	16	35	1.95
85481--85547	33	2.0	33	88	0	98	34	11	13	40	1.81
85501--85525	13	1.9	13	100	0	50	36	16	16	32	1.90
85588--85612	13	1.9	13	100	0	50	32	16	16	36	1.90
85621--85801	52	3.5	52	96	0	326	34	19	17	28	1.95
88935--88959	13	1.9	13	100	0	50	36	16	16	32	1.90
88915--88981	33	2.0	33	88	0	98	32	11	14	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89022--89046	13	1.9	13	100	0	50	32	16	16	36	1.90
102977--103028	1	52.0	1	76	0	50	88	11	0	0	0.52
102975--103028	14	3.9	13	84	15	65	87	12	0	0	0.56
102977--103028	12	4.4	12	81	13	72	88	11	0	0	0.52
102975--103028	21	2.5	22	85	8	76	87	12	0	0	0.56
102980--103026	23	2.0	23	91	8	76	87	12	0	0	0.55
102980--103028	25	2.0	25	88	8	73	87	12	0	0	0.54
104466--104821	59	5.9	59	76	9	310	28	29	16	25	1.97
104466--104821	30	11.8	30	79	8	255	28	29	16	25	1.97
104620--104694	35	2.2	34	82	2	96	22	32	9	36	1.86
104685--104867	28	6.3	29	86	6	205	34	27	16	21	1.94
104889--105173	52	5.9	50	77	14	310	22	27	19	30	1.98
104890--105172	95	3.0	95	95	1	496	22	27	19	30	1.98
105541--105565	13	1.9	13	100	0	50	36	16	16	32	1.90
105521--105587	33	2.0	33	88	0	98	32	11	14	40	1.83
105628--105652	13	1.9	13	100	0	50	32	16	16	36	1.90
105661--105789	52	2.5	52	94	0	222	34	17	17	29	1.94

Tables:   1

The End!