genome.fa.s1867.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1867
Parameters: 2 7 7 80 10 50 1000
Length:  55243

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618--687	22	3.3	21	71	21	58	34	0	2	62	1.10
2001--2053	20	2.7	20	85	11	81	52	0	0	47	1.00
2656--2682	13	2.1	13	100	0	54	44	7	7	40	1.60
3524--3559	17	2.1	17	94	0	63	55	0	0	44	0.99
3521--3594	23	3.4	23	76	16	68	45	1	0	52	1.09
3532--3603	37	2.0	35	84	10	92	40	1	0	58	1.07
3592--3624	12	2.8	12	86	4	50	30	0	0	69	0.88
5265--5295	11	2.8	11	100	0	62	38	0	6	54	1.26
7610--7667	19	3.0	19	92	7	91	56	0	5	37	1.21
7940--8014	24	3.1	24	86	0	105	41	5	5	48	1.49
8042--8092	14	3.7	14	81	5	68	56	0	0	43	0.99
8176--8220	19	2.4	19	92	7	74	42	4	0	53	1.21
8697--8811	45	2.6	45	81	0	131	40	26	19	13	1.88
8878--8934	27	2.1	27	90	6	89	38	29	17	14	1.89
8908--9509	45	13.4	45	90	0	873	40	31	19	8	1.81
8806--8978	72	2.4	72	85	0	238	39	32	17	10	1.83
10465--10506	22	1.9	22	90	9	68	59	0	0	40	0.97
10538--10566	11	2.5	12	94	5	51	51	6	0	41	1.28
10512--10572	23	2.6	22	72	10	59	47	3	0	49	1.18
11971--12027	23	2.5	24	80	8	73	75	7	0	17	1.02
11971--12027	22	2.5	23	82	5	71	75	7	0	17	1.02
15683--15722	21	1.9	21	85	10	55	57	0	2	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15768--15802	16	2.2	16	89	0	52	60	5	11	22	1.52
18191--18246	23	2.5	23	79	2	60	30	1	17	50	1.57
22648--22684	18	2.0	19	89	5	58	54	2	0	43	1.14
24367--24428	6	9.5	6	77	19	54	41	1	0	56	1.09
24352--24424	33	2.3	31	88	4	101	39	2	1	56	1.22
24349--24421	18	4.2	19	76	18	77	39	2	1	56	1.22
24876--24917	12	3.5	12	78	12	50	26	2	2	69	1.13
25145--25182	18	2.1	18	95	0	67	28	0	0	71	0.87
25761--25803	22	2.0	21	82	17	52	53	0	4	41	1.21
27416--27527	42	2.6	43	88	1	163	50	8	3	37	1.51
28217--28262	2	23.5	2	91	4	76	45	0	2	52	1.13
29247--29301	19	2.9	19	78	7	51	52	0	0	47	1.00
29559--29632	31	2.4	32	75	8	82	35	4	1	59	1.25
29939--29968	3	10.0	3	100	0	60	33	0	0	66	0.92
30117--30162	18	2.5	19	75	17	51	43	0	0	56	0.99
30157--30249	5	19.0	5	68	20	54	40	0	1	58	1.05
30124--30243	32	3.9	30	79	17	113	42	0	0	56	1.05
30169--30319	23	6.3	24	70	17	93	39	1	1	57	1.18
30279--30332	13	4.2	13	77	13	58	37	0	3	59	1.15
30426--30463	19	2.1	19	85	14	53	42	0	0	57	0.98
30618--30669	23	2.3	23	81	15	63	42	0	1	55	1.10
30934--30967	16	2.1	16	88	0	50	41	2	0	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31029--31096	31	2.1	33	86	5	95	50	4	0	45	1.22
31906--31947	21	2.0	21	90	0	66	47	0	0	52	1.00
34051--34094	20	2.2	20	83	0	52	40	0	0	59	0.98
34090--34131	22	2.0	21	86	9	59	50	2	0	47	1.14
34066--34132	20	3.4	19	75	19	66	44	1	0	53	1.09
34931--35119	94	2.0	94	100	0	378	28	14	9	47	1.76
35595--35704	40	2.8	40	70	27	99	48	0	0	50	1.07
36799--36823	2	12.5	2	100	0	50	52	0	0	48	1.00
39632--39682	22	2.2	22	89	6	75	35	1	0	62	1.06
39632--39700	24	2.9	23	82	10	77	33	1	1	63	1.12
42173--42246	20	3.7	20	76	3	69	33	14	12	39	1.84
42173--42250	40	2.0	39	84	2	102	33	14	12	39	1.84
43160--43214	22	2.5	22	100	0	110	18	10	9	61	1.54
43160--43221	22	2.9	21	90	4	63	20	11	9	58	1.61
47117--47176	22	2.8	21	76	14	59	38	1	1	58	1.18
46955--47284	124	2.7	123	82	11	366	42	1	1	54	1.20
47238--47289	26	2.1	24	85	7	68	50	0	0	50	1.00
46955--47308	122	3.0	118	78	15	331	43	2	1	52	1.22
47460--47510	24	2.2	22	86	13	68	62	0	1	35	1.06
47460--47510	23	2.2	23	89	6	77	62	0	1	35	1.06
47844--47899	15	3.7	15	75	13	53	42	1	1	53	1.21
48582--48665	16	5.4	15	70	23	50	39	0	2	58	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49358--49412	2	27.5	2	80	7	58	45	1	1	50	1.22
49508--49570	32	2.0	31	84	3	81	42	1	0	55	1.09
50196--50249	28	1.9	29	88	7	85	51	0	1	46	1.11
51125--51162	20	1.9	20	88	0	58	47	0	0	52	1.00
51116--51167	27	2.0	26	88	3	77	48	0	0	51	1.00
51224--51310	16	5.6	16	70	16	58	56	1	0	42	1.07
51254--51309	15	3.9	14	76	6	58	60	1	0	37	1.07
51252--51325	29	2.5	29	74	10	78	60	1	0	37	1.05
51359--51394	15	2.6	14	91	8	56	63	2	0	33	1.08
51623--51665	13	3.2	13	80	6	59	53	0	0	46	1.00
51566--51677	50	2.3	47	80	10	120	51	0	0	48	1.00
51649--51724	13	5.4	15	80	12	65	42	0	0	57	0.98
51604--51705	27	3.8	28	74	20	85	45	0	0	54	0.99
51649--51711	13	4.5	13	84	11	72	39	0	0	60	0.97
51991--52028	16	2.4	16	86	8	51	55	2	2	39	1.28
54441--54490	19	2.4	21	83	12	59	34	2	0	64	1.05
54441--54479	19	2.2	17	90	9	60	35	0	0	64	0.94
54883--54934	24	2.1	25	82	3	61	65	3	0	30	1.10

Tables:   1

The End!