genome.fa.s1872.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1872
Parameters: 2 7 7 80 10 50 1000
Length:  47398

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633--690	23	2.4	25	83	11	68	51	6	8	32	1.59
8195--8267	28	2.6	28	86	4	94	24	17	31	26	1.97
8251--8420	52	3.3	52	78	9	177	32	12	24	29	1.93
8403--8478	27	2.8	28	86	6	102	25	21	30	23	1.99
8137--8490	107	3.3	104	70	15	276	31	14	26	27	1.95
8458--8593	51	2.6	51	79	10	148	31	10	26	31	1.90
8251--8585	52	6.3	53	69	15	176	32	12	25	30	1.92
10954--10979	13	2.0	13	100	0	52	38	15	15	30	1.88
10933--10999	33	2.0	33	88	0	98	43	16	14	25	1.86
11019--11086	19	3.9	18	76	23	83	38	14	11	35	1.83
11041--11065	13	1.9	13	100	0	50	32	16	16	36	1.90
11022--11084	32	2.0	32	96	0	117	36	15	12	34	1.86
11143--11199	21	2.7	21	97	0	105	36	19	10	33	1.86
11204--11259	1	56.0	1	94	0	85	3	1	0	94	0.35
11209--11262	27	2.0	27	100	0	108	7	3	0	88	0.61
13328--13546	58	3.9	56	74	15	213	27	20	19	33	1.96
13351--13568	107	2.0	108	91	2	359	24	22	17	34	1.96
18415--18487	28	2.6	28	82	6	87	58	6	20	13	1.58
26201--26504	151	2.0	151	94	0	536	27	12	28	31	1.93
34818--34950	49	2.7	49	89	4	189	24	18	17	40	1.91
37185--37341	79	2.0	81	88	2	237	27	26	14	31	1.95
37185--37461	129	2.1	130	80	2	306	27	26	14	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37317--37619	79	3.8	78	80	6	245	26	27	14	31	1.95
42665--42738	20	3.7	20	81	3	103	35	13	20	31	1.91
42683--42758	21	3.7	21	82	3	109	40	11	18	28	1.86
42665--42758	41	2.3	41	100	0	188	38	12	19	29	1.89
42797--42822	13	2.0	13	100	0	52	38	15	15	30	1.88
42779--42842	32	2.0	33	90	3	103	42	15	14	28	1.86
43280--43346	37	1.9	35	88	11	102	32	11	25	29	1.92

Tables:   1

The End!