genome.fa.s1874.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1874
Parameters: 2 7 7 80 10 50 1000
Length:  73753

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6041--6066	13	2.0	13	100	0	52	30	15	15	38	1.88
8577--8642	33	2.0	33	84	0	87	40	9	16	33	1.80
8674--8726	21	2.7	20	74	8	54	35	13	11	39	1.80
9489--9936	49	9.2	49	75	10	330	32	17	25	24	1.97
9684--9928	52	4.8	52	81	5	288	33	17	24	24	1.96
9684--9928	101	2.4	100	88	1	355	33	17	24	24	1.96
9945--10271	29	11.5	29	80	10	297	20	17	30	31	1.96
9945--10272	57	5.8	57	82	6	337	20	17	30	31	1.96
9945--10272	115	2.9	111	82	10	380	20	17	30	31	1.96
11751--12027	51	5.3	51	73	10	247	31	14	27	27	1.95
11853--11928	28	2.7	27	92	8	118	25	18	32	23	1.97
11722--12093	158	2.4	155	93	3	611	31	14	27	26	1.95
12012--12083	29	2.6	28	87	8	96	29	19	29	22	1.98
11963--12163	105	1.9	106	81	5	244	30	14	26	27	1.95
12035--12445	79	5.2	78	80	6	413	31	14	26	27	1.95
12100--12444	155	2.2	155	82	5	410	32	13	25	28	1.94
12381--12560	51	3.5	51	83	2	202	34	12	25	27	1.92
13079--13140	19	3.2	19	76	13	63	29	14	16	40	1.88
14417--14462	14	3.5	13	80	19	60	0	0	15	84	0.62
14417--14462	23	2.0	22	91	4	74	0	0	15	84	0.62
14840--14896	13	3.9	13	74	24	51	35	12	17	35	1.87
14820--14917	32	3.0	32	95	1	169	34	11	17	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14818--14915	19	5.8	18	69	28	81	33	11	17	37	1.85
14958--14982	13	1.9	13	100	0	50	32	16	16	36	1.90
14971--15115	52	2.8	50	85	6	200	33	17	17	30	1.94
32021--32088	20	3.8	19	72	25	67	36	11	14	36	1.83
32040--32066	13	2.1	13	100	0	54	40	14	14	29	1.86
32021--32086	33	2.0	33	93	0	114	37	12	15	34	1.84
37714--37738	13	1.9	13	100	0	50	32	16	16	36	1.90
38850--40178	49	27.7	49	87	6	1821	31	18	26	23	1.97
40220--40426	27	7.1	27	72	14	153	29	14	35	20	1.92
40221--40380	57	2.7	59	91	5	261	30	14	35	20	1.92
40361--40631	37	7.9	36	82	11	311	32	12	35	19	1.90
40367--40599	70	3.4	70	89	5	343	31	12	35	20	1.90
40361--40669	104	3.0	103	82	10	373	32	12	34	19	1.90
40361--40693	32	9.9	32	79	13	246	31	13	34	20	1.91
40361--40693	70	5.0	63	82	11	199	31	13	34	20	1.91
42614--42648	13	2.7	13	90	0	52	40	17	11	31	1.85
42733--42784	20	2.6	19	79	14	52	32	15	0	51	1.43
42756--42794	20	1.9	20	84	5	51	28	20	0	51	1.48
44482--44525	19	2.2	21	88	8	65	36	4	20	38	1.73
45101--45125	13	1.9	13	100	0	50	32	16	20	32	1.94
45081--45144	32	2.0	32	87	9	94	28	15	17	39	1.90
45192--45243	13	4.5	13	73	26	62	32	13	17	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45175--45243	33	2.1	32	89	10	104	30	14	18	36	1.91
48389--48468	40	2.0	40	82	7	99	53	7	0	38	1.29
48401--48495	40	2.4	38	82	12	102	54	8	0	36	1.31
49611--49665	14	4.0	14	77	13	60	49	0	1	49	1.11
50670--50724	22	2.5	22	80	11	60	34	0	1	63	1.05
58441--58466	13	2.0	13	100	0	52	30	15	15	38	1.88
59157--59195	17	2.3	17	86	0	51	35	15	15	33	1.89
66721--66771	20	2.5	20	90	0	75	41	17	15	25	1.89

Tables:   1

The End!