genome.fa.s1875.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1875
Parameters: 2 7 7 80 10 50 1000
Length:  42537

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4399--4455	20	2.8	21	81	2	71	43	14	14	28	1.83
4537--4587	21	2.5	21	84	9	61	31	15	11	41	1.83
5595--5654	3	20.0	3	100	0	120	66	0	0	33	0.92
12478--12508	15	2.1	15	100	0	62	6	12	0	80	0.89
15590--15718	52	2.5	52	94	0	222	30	17	17	35	1.92
16333--16459	67	1.9	68	86	1	184	38	12	25	23	1.90
16409--17003	43	12.6	52	76	15	405	32	17	24	25	1.97
16520--17022	43	11.0	44	80	13	581	31	17	25	26	1.97
16520--16584	21	3.0	21	67	18	53	29	16	24	29	1.97
16473--17022	92	6.0	92	93	2	926	31	17	24	26	1.97
17017--17317	33	9.2	33	89	6	472	19	17	34	27	1.95
17319--17663	34	10.8	34	79	13	306	32	13	34	19	1.91
17385--17716	61	5.4	60	74	16	238	31	13	35	20	1.91
17355--17624	95	2.9	95	90	2	402	31	12	36	20	1.90
17515--17605	27	3.2	27	78	17	103	28	13	36	21	1.91
17387--17699	95	3.4	91	85	6	362	31	13	35	20	1.91
17542--17663	64	1.9	65	81	1	147	31	14	32	20	1.93
17621--17777	30	5.3	29	77	12	117	26	16	33	22	1.95
17607--17777	87	2.0	88	81	8	206	28	16	32	22	1.95
18744--18788	22	2.0	23	91	4	74	0	2	15	82	0.77
18743--18788	23	2.0	23	91	8	76	0	2	15	82	0.76
28918--29042	52	2.4	52	95	0	223	28	17	18	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28918--29062	52	2.8	52	87	4	195	28	17	19	34	1.94
29051--29075	13	1.9	13	100	0	50	36	16	16	32	1.90
29138--29162	13	1.9	13	100	0	50	32	16	16	36	1.90
29117--29182	32	2.0	33	88	2	98	39	15	12	33	1.84
29992--30191	49	3.8	52	84	5	237	33	16	25	25	1.96
30212--30665	30	15.5	30	78	9	375	24	16	29	29	1.97
30196--30665	57	8.0	59	76	10	322	24	17	29	29	1.97
30196--30452	88	2.9	87	90	4	383	20	17	29	32	1.96
30374--30656	121	2.4	116	79	5	300	27	17	28	26	1.97
32088--32200	1	113.0	1	72	0	73	3	3	7	84	0.83
32088--32201	33	3.5	31	78	14	122	3	3	8	84	0.86
41890--41916	10	2.7	10	100	0	54	77	22	0	0	0.76

Tables:   1

The End!