genome.fa.s1876.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1876
Parameters: 2 7 7 80 10 50 1000
Length:  62953

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113--234	42	2.8	43	80	7	140	21	24	12	41	1.87
70--234	86	1.9	86	83	3	215	21	26	11	41	1.87
3306--3411	51	2.1	51	82	7	126	29	26	10	33	1.89
3402--3470	28	2.4	29	81	9	81	26	23	20	30	1.98
3351--3624	106	2.6	106	81	4	338	27	23	15	33	1.95
3564--3681	51	2.3	51	85	5	159	32	26	10	31	1.89
3615--3835	79	2.8	80	86	4	306	30	23	13	32	1.93
6270--6351	28	2.8	28	81	9	76	26	1	3	68	1.14
10576--10628	20	2.7	20	96	0	97	28	15	13	43	1.84
10617--10641	13	1.9	13	100	0	50	36	16	16	32	1.90
12985--13211	79	2.9	79	82	3	278	25	25	16	33	1.96
13065--13337	129	2.1	127	83	7	329	26	24	15	34	1.94
13144--13262	50	2.4	51	81	4	125	26	21	15	36	1.93
12974--13381	206	2.0	207	83	3	527	25	24	15	35	1.94
13194--13570	79	4.8	77	76	9	318	26	24	15	33	1.95
27059--27247	61	3.1	61	84	3	256	25	28	17	28	1.98
27256--27567	55	5.3	55	76	13	234	27	25	18	27	1.98
27331--27622	61	4.8	61	85	3	329	26	25	17	30	1.97
27661--27932	85	3.2	87	79	6	272	18	23	12	45	1.83
27649--27882	85	2.7	85	81	3	292	20	25	12	41	1.88
27662--27988	41	7.7	42	72	11	229	20	25	12	42	1.87
28632--28670	20	2.0	20	94	0	69	30	15	7	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28598--28737	74	1.9	75	86	4	203	27	14	15	42	1.85
33070--33127	27	2.1	27	87	0	80	27	39	1	31	1.67
33897--33961	32	2.0	32	84	6	85	44	15	12	27	1.82
36162--36211	21	2.3	21	80	10	57	56	4	18	22	1.58
38009--38039	15	2.1	15	93	0	53	48	16	22	12	1.80
40385--40410	13	2.0	13	100	0	52	38	15	15	30	1.88
40869--40935	37	1.9	35	88	11	102	32	11	25	29	1.92
45839--45864	13	2.0	13	100	0	52	38	15	15	30	1.88
46323--46389	37	1.9	35	88	11	102	32	11	25	29	1.92
47858--47922	28	2.3	28	91	0	103	29	20	23	27	1.98
47882--48433	79	6.8	79	80	5	561	34	12	24	28	1.92
48839--48993	51	3.0	53	89	5	219	40	14	18	27	1.88
49780--50261	66	7.4	65	79	7	503	35	15	23	25	1.95
53984--54051	23	2.8	24	82	6	93	33	11	4	50	1.59
54171--54199	10	3.0	10	95	5	51	0	27	0	72	0.85
54553--54606	23	2.2	24	90	9	83	24	18	20	37	1.94
54652--54718	30	2.2	30	89	0	98	16	17	14	50	1.78
54790--54831	12	3.3	12	81	12	57	9	21	14	54	1.68
55485--55658	42	4.2	42	78	4	165	33	18	32	15	1.92
55910--56150	134	1.8	131	82	5	313	41	13	21	23	1.88
55911--56149	44	5.4	44	74	6	191	42	13	20	23	1.88
56926--57158	88	2.7	88	76	4	238	45	13	17	23	1.83

Tables:   1

The End!