Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1878
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4778
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Found at i:1470 original size:476 final size:476
Alignment explanation
Indices: 1--4778 Score: 7822
Period size: 476 Copynumber: 10.1 Consensus size: 476
1 GTTTGTCTCTT-AATATGCCGAACATT-ATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
1 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
*
64 ACCCATAAACATAGTCTTCTCATTAGGATACACG-ATATGATGCTCTGGTTTC-CAACAAAGG-T
66 A-CCATAAACATAGTCTTCTCATTAGGATACACGAATTTGATGCTCTGGTTTCGCAACAAAGGTT
*
126 TTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGGGCCCTCAAATGAGACAAACACGGA-TCTAG
130 TTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTG-CCTCAAATGAGACAAACACGGATTCTAG
*
190 GAATGAAACTTCATTCTTTT-CCGATATTTAAAGCACTACAAACACGTTCTCCTCTTTAGGACAA
194 GAATG-AACTTCATTCTTTTCCCG--A--TAAAGCACTACAAACACATTCTCCTCTTTAGGACAA
* *
254 AAGACATTAAAG-TTTTCTTTTGCGTGGAAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAA
254 AAGACATTGAAGTTTTTCTTTTGCATGG-AAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAA
318 GTTCAT-CCCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATT-GGA
318 GTTCATCCCCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGA
* *
381 AGGCAAAACACATTGCTATTGTTCGGATACCCGACATTGATGCTTTGGTGTCTCAAG-AAAGCTT
383 AGCCAAAACACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTT
*
445 TTCGTCACGTCGTTTTTGATAGAATCAAC
448 TTCTTCACGTCGTTTTTGATAGAATCAAC
*
474 GTTTGTCTCTTAAATATG-CGAACATTAATACTCAAACTAATGCTCATTCTTTTTAGATTTAGGC
1 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
*
538 ACAATAAACATAGTCTTCTCATTAGGATACTA--ACATTTGATGCTCTGGTTTCGCAACCAAAGG
66 ACCATAAACATAGTCTTCTCATTAGGATAC-ACGA-ATTTGATGCTCTGGTTTCGCAA-CAAAGG
*
601 TTTTTTTCCCACCCAATCGTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCT
128 TTTTTTTCCCA-CCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCT
666 AGGAATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAG
192 AGGAATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAG
*
731 A-ATTGAAGTTTTTCTTTTG--TGGAAA--TTTTCTTCGCTC-ATTTTTCCTTAAAATGAAAGTT
257 ACATTGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTA-TTTTCCTTAAAATGAAAGTT
* *
790 CATCCCTTGAATAAGACAAGCATCGATTGTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAG-
321 CATCCCCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGC
854 CAAAACACATTGCTATTGTT-GGATACCC-ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTC
386 CAAAACACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTC
*
917 TTCACGTCATTTTTGATAGAATCAAC
451 TTCACGTCGTTTTTGATAGAATCAAC
943 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
1 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
*
1008 ACCATAAACATAGTCTTCTCATTAGGATACACGAATTTGATGCTCTCGTTTCGCAACAAAGGTTT
66 ACCATAAACATAGTCTTCTCATTAGGATACACGAATTTGATGCTCTGGTTTCGCAACAAAGGTTT
*
1073 TTTTCCCACCAATCGTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGA
131 TTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGA
* *
1138 ATGAACTTCATTCTTTTTCCGATAAAGCACTACAAACACGTTCTCCTCTTTAGGACAAAAGACAT
196 ATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACAT
*
1203 TGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCC
261 TGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCC
* * *
1268 CCTAAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGATGGCAAAA
326 CCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAA
* *
1333 CACATTGCTATTGTTAGGATACCCGGCATTGATGGTTTGGTGTCTCAAGAAAAGCTTTTCTTCAC
391 CACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCAC
1398 GTCGTTTTTGATAGAATCAAC
456 GTCGTTTTTGATAGAATCAAC
1419 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
1 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
*
1484 ACCATAAACATAGTCTTCTCATTAGGATACACGAATTTGATGCTCTCGTTTCGCAACAAAGGTTT
66 ACCATAAACATAGTCTTCTCATTAGGATACACGAATTTGATGCTCTGGTTTCGCAACAAAGGTTT
*
1549 TTTTCCCACCAATCGTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGA
131 TTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGA
** * *
1614 ATGAACTTTGTTCTTTTCCCGATAAAGCACTACAAACACATTCTCCCCTTTGGGACAAAAGACAT
196 ATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACAT
* * *
1679 TAAAGTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCC
261 TGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCC
*
1744 CTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAA
326 CCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAA
* *
1809 CACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAATAGCTTTTCTTAAC
391 CACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCAC
*
1874 GTCGTTTTTAATAGAATCAAC
456 GTCGTTTTTGATAGAATCAAC
1895 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
1 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
1960 ACCATAAACATAGTCTTCTCATTAGGATACACG-ATATTGATGCTCTGGTTTCGCAACAAAGG-T
66 ACCATAAACATAGTCTTCTCATTAGGATACACGAAT-TTGATGCTCTGGTTTCGCAACAAAGGTT
2023 TTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGG
130 TTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGG
* *
2088 AATGAACTTCATTCTTTT-CCGATAACGCACTACAAACACGTTCTCCTCTTTAGGACAAAAGACA
195 AATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACA
*
2152 TTGAAG-TTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAGATTAAAGTTCAT
260 TTGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAA-ATGAAAGTTCAT
*
2216 CCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAA
324 CCCCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAA
* *
2281 AACACATTGCTATTGTTAGGATACCCGGCATTGATGGTTTGGTGTCTCAAGAAAAGCTTTTCTTC
389 AACACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTC
2346 ACGTCG-TTTTGATAG-ATCAAC
454 ACGTCGTTTTTGATAGAATCAAC
2367 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
1 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
2432 ACCAT-AACATAGTCTTCTCATTAGGATACACG-ATATTGATGCTCTGG-TTCGCAAC-AAGG-T
66 ACCATAAACATAGTCTTCTCATTAGGATACACGAAT-TTGATGCTCTGGTTTCGCAACAAAGGTT
*
2492 TTTTTCCCACCAATCGTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGG
130 TTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGG
* *
2557 AATGAACTTCATTCTTTTTCCGATAAAGCACTACAAACACGTTCTCCTCTTTAGGACAAAAGACA
195 AATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACA
*
2622 TTGAAGTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATC
260 TTGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATC
* *
2687 CCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGGCAAA
325 CCCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAA
2752 ACACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCA
390 ACACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCA
2817 CGTCGTTTTTGATAGAATCAAC
455 CGTCGTTTTTGATAGAATCAAC
*
2839 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATGCTCATTCTTTTTAGATTTAGGC
1 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
*
2904 ACAATAAACATAGTCTTCTCATTAGGATACACGAATTTGATGCTCTGGTTTCGCAACAAAGGTTT
66 ACCATAAACATAGTCTTCTCATTAGGATACACGAATTTGATGCTCTGGTTTCGCAACAAAGGTTT
2969 TTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGA
131 TTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGA
3034 ATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACAT
196 ATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACAT
* *
3099 TGAAGTTTTT-TTTTGCCTGGAAATCTTTTCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCC
261 TGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCC
* * *
3163 CTTGAATAAGACAAGCATCGATTGTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGGCAAAA
326 CCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAA
*
3228 CACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTAAC
391 CACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCAC
*
3293 GTCATTTTTGATAGAATCAAC
456 GTCGTTTTTGATAGAATCAAC
* *
3314 GTTTGTTCTCTTAAATA-GCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGG
1 GTTTG-TCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGG
* *
3378 CACCATAACCATAGTCTCTTCTCATTAGGATACACG-ATATTG-CGCTCTGGTTTCGCAACAAAG
65 CACCATAAACATAG--TCTTCTCATTAGGATACACGAAT-TTGATGCTCTGGTTTCGCAACAAAG
*
3441 GTTTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTTCGGGCCTCAAATGAGACAAACACGG-TT
127 G-TTTTTTTCCCACCAATCGTTGTAAAGTCTAAG-TTCGTGCCTCAAATGAGACAAACACGGATT
3505 CTAGGAATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAA
190 CTAGGAATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAA
*
3570 AGACATTGAAGTTTTTC-TTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTT-AAATTAAAGT
255 AGACATTGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGT
*
3633 TCAT-CCCT-AATAAGACAAGCATTG-TTCTCCTAACAGTCTCCTTTC-TTTCAAGATTGGGAAG
320 TCATCCCCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAG
* * * *
3694 CCAAAGCACATTGCTATTGTTAGGATCCCCGGCTTGCATTGATGGTTTGGTGTCTCAAGAAAAGC
385 CCAAAACACATTGCTATTGTTAGGATACCC-G---ACATTGATGCTTTGGTGTCTCAAGAAAAGC
*
3759 TTTTCTTCACGTCG-TTTTCATAGAATCAAC
446 TTTTCTTCACGTCGTTTTTGATAGAATCAAC
3789 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
1 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
*
3854 ACCATAAACATAGT-TTCTCATTAGGATACACGAATTTGATGCTCTCGTTTCGCAACAAAGGTTT
66 ACCATAAACATAGTCTTCTCATTAGGATACACGAATTTGATGCTCTGGTTTCGCAACAAAGGTTT
*
3918 TTTTCCCACCAATCGTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGA
131 TTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGA
** *
3983 ATGAACTTTGTTC-TTTCCCGATAAAGCACTAC-AACACATTCTCC-CTTTGGGAC-AAAGACAT
196 ATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACAT
* ** *
4044 TAAAGTTTTTCTTTT-TTTGCCGAAATCTTTTCTTCGCTCTATTTT-CTTAAAATGAACAGTTCA
261 TGAAGTTTTTCTTTTGCATG--GAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAA-AGTTCA
4107 T-CCCTGAATAAGACAAGCATCGATTCTCCTAA-AGTCTCCTTTCTTTTCAAGATTGGGAAGCCA
323 TCCCCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCA
*
4170 AAACAC-TTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAACAGCTTTTCTT
388 AAACACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTT
*
4234 AACGTCGTTTTTGATAGAATCAAC
453 CACGTCGTTTTTGATAGAATCAAC
* * *
4258 GTTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAAT-CTCATTC-TTTTAGATTTAGG
1 G-TTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGG
* *
4321 CACCAT-AACATAGTCTTCTCATTAGGATACACGATAATTGATGCTCTGGTTTCGCAACAAAGGC
65 CACCATAAACATAGTCTTCTCATTAGGATACACGA-ATTTGATGCTCTGGTTTCGCAACAAAGGT
* * * *
4385 TTTTTTCCCACCAATCGTTGTAAAGTCTAGGTTTGTGCCTCAAATGAGACAAATATGGATTCTAG
129 TTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAG
* * * * * *
4450 TAAT-ATCTTAATTCTTTTTCCGATATAAACGACTACAAACACGTTCTCCTC-TTAGGACAAAAG
194 GAATGAACTTCATTCTTTTCCCGATA-AAGC-ACTACAAACACATTCTCCTCTTTAGGACAAAAG
* *
4513 ACATTGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCG-CCTATTTTCCTTCAATATTAAAGTT
257 ACATTGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTT-AAAATGAAAGTT
*
4577 CATCCCCTAAATAAGAC-AGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGC
321 CATCCCCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGC
* *
4641 CAAAACACATTGTTATTGGTAGGATACCCGACATTGATGGCTTT-G-G-CTCAAGAAAAGCTTTT
386 CAAAACACATTGCTATTGTTAGGATACCCGACATTGAT-GCTTTGGTGTCTCAAGAAAAGCTTTT
* *
4703 CTTCGCGTCGTTTTTAATAGAAT-AAC
450 CTTCACGTCGTTTTTGATAGAATCAAC
4729 GTTT-TCTCTTAAATATGCCGAACATTAATACTCAAACTAAT-CTCATTCTT
1 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTT
Statistics
Matches: 4065, Mismatches: 160, Indels: 163
0.93 0.04 0.04
Matches are distributed among these distances:
467 8 0.00
468 245 0.06
469 393 0.10
470 456 0.11
471 183 0.05
472 406 0.10
473 389 0.10
474 387 0.10
475 445 0.11
476 871 0.21
477 218 0.05
478 64 0.02
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (476 bp):
GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
ACCATAAACATAGTCTTCTCATTAGGATACACGAATTTGATGCTCTGGTTTCGCAACAAAGGTTT
TTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGA
ATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACAT
TGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCC
CCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAA
CACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCAC
GTCGTTTTTGATAGAATCAAC
Found at i:2734 original size:944 final size:948
Alignment explanation
Indices: 1--4778 Score: 7881
Period size: 944 Copynumber: 5.1 Consensus size: 948
1 GTTTGTCTCTT-AATATGCCGAACATT-ATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
1 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
*
64 ACCCATAAACATAGTCTTCTCATTAGGATACACG-ATATGATGCTCTGGTTTC-CAACAAAGG-T
66 A-CCATAAACATAGTCTTCTCATTAGGATACACGAATTTGATGCTCTGGTTTCGCAACAAAGGTT
*
126 TTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGGGCCCTCAAATGAGACAAACACGGA-TCTAG
130 TTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTG-CCTCAAATGAGACAAACACGGATTCTAG
190 GAATGAAACTTCATTCTTTTCCGATATTTAAAGCACTACAAACACGTTCTCCTCTTTAGGACAAA
194 GAATG-AACTTCATTCTTTTCCG--A--TAAAGCACTACAAACACGTTCTCCTCTTTAGGACAAA
* *
255 AGACATTAAAGTTTTCTTTTGCGTGGAAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGT
254 AGACATTGAAGTTTTCTTTTGCATGG-AAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGT
320 TCATCCCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATT-GGAAGG
318 TCATCCCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGG
*
384 CAAAACACATTGCTATTGTTCGGATACCCGACATTGATGCTTTGGTGTCTCAAG-AAAGCTTTTC
383 CAAAACACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTC
*
448 GTCACGTCGTTTTTGATAGAATCAACGTTTGTCTCTTAAATATG-CGAACATTAATACTCAAACT
448 TTCACGTCGTTTTTGATAGAATCAACGTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACT
* *
512 AATGCTCATTCTTTTTAGATTTAGGCACAATAAACATAGTCTTCTCATTAGGATACTAAC-AT-T
513 AATCCTCATTCTTTTTAGATTTAGGCACCAT-AACATAGTCTTCTCATTAGGATAC--ACGATAT
*
575 TGATGCTCTGGTTTCGCAACCAAAGGTTTTTTTCCCACCCAATCGTTGTAAATTCTAAGTTCGTG
575 TGATGCTCTGGTTTCGCAA-CAAAGGTTTTTTTCCCA-CCAATCGTTGTAAAGTCTAAGTTCGTG
640 CCTCAAATGAGACAAACACGGATTCTAGGAATGAACTTCATTCTTTTCCCGATAAAGCACTACAA
638 CCTCAAATGAGACAAACACGGATTCTAGGAATGAACTTCATTCTTTTCCCGATAAAGCACTACAA
705 ACACATTCTCCTCTTTAGGACAAAAGA-ATTGAAGTTTTTCTTTTG--TGGAAA--TTTTCTTCG
703 ACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCG
* *
765 CTC-ATTTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTGTCCTAACAGT
768 CCCTA-TTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGT
829 CTCCTTTCTTTTCAAGATTGGGAAG-CAAAACACATTGCTATTGTT-GGATACCC-ACATTGATG
832 CTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGACATTGATG
* *
891 CTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCATTTTTGATAGAATCAAC
897 CTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAAC
943 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
1 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
*
1008 ACCATAAACATAGTCTTCTCATTAGGATACACGAATTTGATGCTCTCGTTTCGCAACAAAGGTTT
66 ACCATAAACATAGTCTTCTCATTAGGATACACGAATTTGATGCTCTGGTTTCGCAACAAAGGTTT
*
1073 TTTTCCCACCAATCGTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGA
131 TTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGA
1138 ATGAACTTCATTCTTTTTCCGATAAAGCACTACAAACACGTTCTCCTCTTTAGGACAAAAGACAT
196 ATGAACTTCATTC-TTTTCCGATAAAGCACTACAAACACGTTCTCCTCTTTAGGACAAAAGACAT
*
1203 TGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCC
260 TGAAG-TTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCAT-C
* *
1268 CCTAAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGATGGCAAAA
323 CCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGGCAAAA
* *
1333 CACATTGCTATTGTTAGGATACCCGGCATTGATGGTTTGGTGTCTCAAGAAAAGCTTTTCTTCAC
388 CACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCAC
1398 GTCGTTTTTGATAGAATCAACGTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCC
453 GTCGTTTTTGATAGAATCAACGTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCC
1463 TCATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGA-ATTTGATGC
518 TCATTCTTTTTAGATTTAGGCACCAT-AACATAGTCTTCTCATTAGGATACACGATA-TTGATGC
* *
1527 TCTCGTTTCGCAACAAAGGTTTTTTTCCCACCAATCGTAGTAAAGTCTAAGTTCGTGCCTCAAAT
581 TCTGGTTTCGCAACAAAGGTTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAAT
**
1592 GAGACAAACACGGATTCTAGGAATGAACTTTGTTCTTTTCCCGATAAAGCACTACAAACACATTC
646 GAGACAAACACGGATTCTAGGAATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTC
* * * * *
1657 TCCCCTTTGGGACAAAAGACATTAAAGTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCTCTATTT
711 TCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTT
1722 TCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCT
776 TCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCT
1787 TTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGT
841 TTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGT
* *
1852 CTCAAGAATAGCTTTTCTTAACGTCGTTTTTAATAGAATCAAC
906 CTCAAGAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAAC
1895 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
1 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
1960 ACCATAAACATAGTCTTCTCATTAGGATACACG-ATATTGATGCTCTGGTTTCGCAACAAAGG-T
66 ACCATAAACATAGTCTTCTCATTAGGATACACGAAT-TTGATGCTCTGGTTTCGCAACAAAGGTT
2023 TTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGG
130 TTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGG
*
2088 AATGAACTTCATTCTTTTCCGATAACGCACTACAAACACGTTCTCCTCTTTAGGACAAAAGACAT
195 AATGAACTTCATTCTTTTCCGATAAAGCACTACAAACACGTTCTCCTCTTTAGGACAAAAGACAT
*
2153 TGAAGTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAGATTAAAGTTCATCC
260 TGAAGTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAA-ATGAAAGTTCATCC
*
2218 CTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAA
324 C-TGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGGCAAAA
* *
2283 CACATTGCTATTGTTAGGATACCCGGCATTGATGGTTTGGTGTCTCAAGAAAAGCTTTTCTTCAC
388 CACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCAC
2348 GTCG-TTTTGATAG-ATCAACGTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCC
453 GTCGTTTTTGATAGAATCAACGTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCC
2411 TCATTCTTTTTAGATTTAGGCACCATAACATAGTCTTCTCATTAGGATACACGATATTGATGCTC
518 TCATTCTTTTTAGATTTAGGCACCATAACATAGTCTTCTCATTAGGATACACGATATTGATGCTC
*
2476 TGG-TTCGCAAC-AAGG-TTTTTTCCCACCAATCGTAGTAAAGTCTAAGTTCGTGCCTCAAATGA
583 TGGTTTCGCAACAAAGGTTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
* *
2538 GACAAACACGGATTCTAGGAATGAACTTCATTCTTTTTCCGATAAAGCACTACAAACACGTTCTC
648 GACAAACACGGATTCTAGGAATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTC
*
2603 CTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTC
713 CTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTC
2668 CTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTT
778 CTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTT
*
2733 TCAAGATTGGGAAGGCAAAACACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCT
843 TCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCT
*
2798 CAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAAC
908 CAAGAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAAC
*
2839 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATGCTCATTCTTTTTAGATTTAGGC
1 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
*
2904 ACAATAAACATAGTCTTCTCATTAGGATACACGAATTTGATGCTCTGGTTTCGCAACAAAGGTTT
66 ACCATAAACATAGTCTTCTCATTAGGATACACGAATTTGATGCTCTGGTTTCGCAACAAAGGTTT
2969 TTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGA
131 TTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGA
*
3034 ATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACAT
196 ATGAACTTCATTCTTTT-CCGATAAAGCACTACAAACACGTTCTCCTCTTTAGGACAAAAGACAT
* * *
3099 TGAAGTTTTTTTTTGCCTGGAAATCTTTTCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCC
260 TGAAGTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCC
*
3164 TTGAATAAGACAAGCATCGATTGTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGGCAAAAC
325 -TGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGGCAAAAC
*
3229 ACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTAACG
389 ACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACG
* * *
3294 TCATTTTTGATAGAATCAACGTTTGTTCTCTTAAATA-GCTGAACTTTAATACTCAAACTAATCC
454 TCGTTTTTGATAGAATCAACGTTTG-TCTCTTAAATATGCCGAACATTAATACTCAAACTAATCC
*
3358 TCATTCTTTTTAGATTTAGGCACCATAACCATAGTCTCTTCTCATTAGGATACACGATATTG-CG
518 TCATTCTTTTTAGATTTAGGCACCATAA-CATAG--TCTTCTCATTAGGATACACGATATTGATG
*
3422 CTCTGGTTTCGCAACAAAGGTTTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTTCGGGCCTCA
580 CTCTGGTTTCGCAACAAAGG-TTTTTTTCCCACCAATCGTTGTAAAGTCTAAG-TTCGTGCCTCA
3487 AATGAGACAAACACGG-TTCTAGGAATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACA
643 AATGAGACAAACACGGATTCTAGGAATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACA
3551 TTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTC-TTTGCATGGAAATCTTTTCTTCGCCCTA
708 TTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTA
* *
3615 TTTTCCTT-AAATTAAAGTTCATCCC-T-AATAAGACAAGCATTG-TTCTCCTAACAGTCTCCTT
773 TTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTT
* * * *
3676 TC-TTTCAAGATTGGGAAGCCAAAGCACATTGCTATTGTTAGGATCCCCGGCTTGCATTGATGGT
838 TCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCC-G---ACATTGATGCT
*
3740 TTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCG-TTTTCATAGAATCAAC
899 TTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAAC
3789 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
1 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
*
3854 ACCATAAACATAGT-TTCTCATTAGGATACACGAATTTGATGCTCTCGTTTCGCAACAAAGGTTT
66 ACCATAAACATAGTCTTCTCATTAGGATACACGAATTTGATGCTCTGGTTTCGCAACAAAGGTTT
*
3918 TTTTCCCACCAATCGTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGA
131 TTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGA
** * * *
3983 ATGAACTTTGTTCTTTCCCGATAAAGCACTAC-AACACATTCTCC-CTTTGGGAC-AAAGACATT
196 ATGAACTTCATTCTTTTCCGATAAAGCACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATT
* ** *
4045 AAAGTTTTTCTTTT-TTTGCCGAAATCTTTTCTTCGCTCTATTTT-CTTAAAATGAACAGTTCAT
261 GAAG-TTTTCTTTTGCATG--GAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAA-AGTTCAT
*
4108 CCCTGAATAAGACAAGCATCGATTCTCCTAA-AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAA
322 CCCTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGGCAAA
* *
4172 ACAC-TTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAACAGCTTTTCTTAA
387 ACACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCA
* * *
4236 CGTCGTTTTTGATAGAATCAACGTTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAAT
452 CGTCGTTTTTGATAGAATCAACG-TTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAAT
4301 -CTCATTC-TTTTAGATTTAGGCACCATAACATAGTCTTCTCATTAGGATACACGATAATTGATG
516 CCTCATTCTTTTTAGATTTAGGCACCATAACATAGTCTTCTCATTAGGATACACGAT-ATTGATG
* * *
4364 CTCTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAGGTTTGTGCCTCAAA
580 CTCTGGTTTCGCAACAAAGGTTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * * * * * * *
4429 TGAGACAAATATGGATTCTAGTAAT-ATCTTAATTCTTTTTCCGATATAAACGACTACAAACACG
645 TGAGACAAACACGGATTCTAGGAATGAACTTCATTCTTTTCCCGATA-AAGC-ACTACAAACACA
4493 TTCTCCTC-TTAGGACAAAAGACATTGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCG-CCTA
708 TTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTA
* * * *
4556 TTTTCCTTCAATATTAAAGTTCATCCCCTAAATAAGAC-AGCATCGATTCTCCTAACAGTCTCCT
773 TTTTCCTT-AAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCT
* *
4620 TTCTTTTCAAGATTGGGAAGCCAAAACACATTGTTATTGGTAGGATACCCGACATTGATGGCTTT
837 TTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGACATTGAT-GCTTT
*
4685 -G-G-CTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTAATAGAAT-AAC
901 GGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAAC
4729 GTTT-TCTCTTAAATATGCCGAACATTAATACTCAAACTAAT-CTCATTCTT
1 GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTT
Statistics
Matches: 3653, Mismatches: 117, Indels: 136
0.94 0.03 0.03
Matches are distributed among these distances:
938 9 0.00
939 37 0.01
940 95 0.03
941 97 0.03
942 175 0.05
943 155 0.04
944 789 0.22
945 469 0.13
946 350 0.10
947 198 0.05
948 130 0.04
949 301 0.08
950 344 0.09
951 151 0.04
952 215 0.06
953 112 0.03
954 26 0.01
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (948 bp):
GTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGC
ACCATAAACATAGTCTTCTCATTAGGATACACGAATTTGATGCTCTGGTTTCGCAACAAAGGTTT
TTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCTAGGA
ATGAACTTCATTCTTTTCCGATAAAGCACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATT
GAAGTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCT
GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGGCAAAACAC
ATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTC
GTTTTTGATAGAATCAACGTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCA
TTCTTTTTAGATTTAGGCACCATAACATAGTCTTCTCATTAGGATACACGATATTGATGCTCTGG
TTTCGCAACAAAGGTTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
AAACACGGATTCTAGGAATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTC
TTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTT
AAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCA
AGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAA
GAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAAC
Done.