Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold188
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 942289
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.27
Warning! 138643 characters in sequence are not A, C, G, or T
File 5 of 5
Found at i:794756 original size:22 final size:21
Alignment explanation
Indices: 794719--794789 Score: 69
Period size: 19 Copynumber: 3.4 Consensus size: 21
794709 CCCTTTTCTC
794719 TTTTTTTTGCTATTTTTTCTTGGT
1 TTTTTTTTG-T-TTTTTT-TTGGT
794743 TTTTTTTTGTTTTTTTTT--T
1 TTTTTTTTGTTTTTTTTTGGT
* *
794762 GTTTTGTT-TTTTTTTTT-GT
1 TTTTTTTTGTTTTTTTTTGGT
794781 TTTTTTTTG
1 TTTTTTTTG
794790 GTGTAAAGGA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
18 9 0.22
19 14 0.34
21 2 0.05
22 6 0.15
23 1 0.02
24 9 0.22
ACGTcount: A:0.01, C:0.03, G:0.11, T:0.85
Consensus pattern (21 bp):
TTTTTTTTGTTTTTTTTTGGT
Found at i:794786 original size:12 final size:12
Alignment explanation
Indices: 794719--794788 Score: 77
Period size: 12 Copynumber: 5.5 Consensus size: 12
794709 CCCTTTTCTC
794719 TTTTTTTTGCTATT
1 TTTTTTTTG-T-TT
* *
794733 TTTTCTTGGTTT
1 TTTTTTTTGTTT
*
794745 TTTTTTGTTTTTT
1 TTTTTT-TTGTTT
794758 TTTTGTTTTGTTT
1 TTTT-TTTTGTTT
794771 TTTTTTTTGTTT
1 TTTTTTTTGTTT
794783 TTTTTT
1 TTTTTT
794789 GGTGTAAAGG
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
12 21 0.44
13 18 0.38
14 9 0.19
ACGTcount: A:0.01, C:0.03, G:0.10, T:0.86
Consensus pattern (12 bp):
TTTTTTTTGTTT
Found at i:800252 original size:21 final size:21
Alignment explanation
Indices: 800219--800259 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
800209 CTAAGTAAAA
800219 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
800240 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
800260 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:800324 original size:20 final size:19
Alignment explanation
Indices: 800299--800369 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
800289 ACCCTGAAAA
800299 GTATCGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* **
800319 GTATCGATACAAATTGCAT
1 GTATCGATACACATTAAAT
**
800338 AGTATCGATACACACAAATAT
1 -GTATCGATACACATTAA-AT
800359 GTATCGATACA
1 GTATCGATACA
800370 GGTCATTAGC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 4 0.10
20 35 0.85
21 2 0.05
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.30
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Found at i:800553 original size:13 final size:13
Alignment explanation
Indices: 800535--800573 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
800525 TCACTATTCA
800535 TGTATCGATACAT
1 TGTATCGATACAT
* *
800548 TGTATCAATACAG
1 TGTATCGATACAT
800561 TGTATCGATACAT
1 TGTATCGATACAT
800574 CATAAATAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:801114 original size:34 final size:35
Alignment explanation
Indices: 801051--801117 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
801041 CTAAGTGATT
801051 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
801087 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
801118 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:810175 original size:20 final size:19
Alignment explanation
Indices: 810146--810220 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 19
810136 AAAAAGACAT
810146 AATGTATCGATACATTGAA
1 AATGTATCGATACATTGAA
* *
810165 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTGA-A
* *
810186 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTG-AA
810206 AATGTATCGATACAT
1 AATGTATCGATACAT
810221 CTAGATAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.33
Consensus pattern (19 bp):
AATGTATCGATACATTGAA
Found at i:810203 original size:40 final size:39
Alignment explanation
Indices: 810143--810220 Score: 120
Period size: 40 Copynumber: 2.0 Consensus size: 39
810133 GGTAAAAAGA
*
810143 CATAATGTATCGATACATTGAAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
810182 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
810221 CTAGATAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:819454 original size:51 final size:51
Alignment explanation
Indices: 819385--819551 Score: 185
Period size: 51 Copynumber: 3.3 Consensus size: 51
819375 AAATAACGGG
* *
819385 GTTGGAGTATCCCCGATTGTGAGAAATT-GATGCTTTGGAAATACAATCGGA
1 GTTGGAGTATCCCCGATTGTGAGAAATTAG-TGCTTTAGAAATAAAATCGGA
* * * *
819436 GTTGGAGTATCTCTGATTGTGAAAAATTAGTGTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAGAAATTAGTGCTTTAGAAATAAAATCGGA
* * * * * *
819487 GTTGGAATATCCCCGATTGTGGAGAATTTA-TGTTTTAGAAACAAAACCGGG
1 GTTGGAGTATCCCCGATTGT-GAGAAATTAGTGCTTTAGAAATAAAATCGGA
*
819538 GTTGGAGTGTCCCC
1 GTTGGAGTATCCCC
819552 TCGGAAATAA
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
51 90 0.92
52 8 0.08
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAGAAATTAGTGCTTTAGAAATAAAATCGGA
Found at i:819569 original size:181 final size:182
Alignment explanation
Indices: 819256--819582 Score: 424
Period size: 181 Copynumber: 1.8 Consensus size: 182
819246 ATAACAGGGC
* * * * *
819256 TGGAGTATCTTCGATTATGATAAATCGGTGTTCTAGAAATAAAAATCGGGGTTGGAGTATCCTCA
1 TGGAGTATCTTCGATTATGAAAAATCAGTGTTCTAGAAATAAAAATCGGAGTTGGAATATCCCCA
** ** *
819321 ATTGTGGAAAATCGATGCTTTAGAAATGAGGCCGGGGTTAGAGTATCCCCGCTAAAATAACGGGG
66 ATTGTGGAAAATCGATGCTTTAGAAACAAAACCGGGGTTAGAGTATCCCCGCGAAAATAACGGGG
819386 TTGGAGTATCCCCGATTGTGAGAAATTGATGCTTTGGAAATACAATCGGAGT
131 TTGGAGTATCCCCGATTGTGAGAAATTGATGCTTTGGAAATACAATCGGAGT
* * *
819438 TGGAGTATC-TCTGATTGTGAAAAATTAGTGTTTTAGAAAT-AAAATCGGAGTTGGAATATCCCC
1 TGGAGTATCTTC-GATTATGAAAAATCAGTGTTCTAGAAATAAAAATCGGAGTTGGAATATCCCC
* * ** * * * * * *
819501 GATTGTGGAGAATTTATGTTTTAGAAACAAAACCGGGGTTGGAGTGTCCCCTCGGAAATAATGGG
65 AATTGTGGAAAATCGATGCTTTAGAAACAAAACCGGGGTTAGAGTATCCCCGCGAAAATAACGGG
819566 GTTGGAGTATCCCCGAT
130 GTTGGAGTATCCCCGAT
819583 AAAAAATTGA
Statistics
Matches: 121, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
181 89 0.74
182 32 0.26
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.29
Consensus pattern (182 bp):
TGGAGTATCTTCGATTATGAAAAATCAGTGTTCTAGAAATAAAAATCGGAGTTGGAATATCCCCA
ATTGTGGAAAATCGATGCTTTAGAAACAAAACCGGGGTTAGAGTATCCCCGCGAAAATAACGGGG
TTGGAGTATCCCCGATTGTGAGAAATTGATGCTTTGGAAATACAATCGGAGT
Found at i:819613 original size:76 final size:76
Alignment explanation
Indices: 819511--819734 Score: 394
Period size: 76 Copynumber: 2.9 Consensus size: 76
819501 GATTGTGGAG
* * *
819511 AATTTATGTTTTAGAAACAAAACCGGGGTTGGAGTGTCCCCTCGGAAATAATGGGGTTGGAGTAT
1 AATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTGTCCCCTCGGAAATAACGGGGTTGGAGTAT
819576 CCCCGATAAAA
66 CCCCGATAAAA
819587 AATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTGTCCCCTCGGAAATAACGGGGTTGGAGTAT
1 AATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTGTCCCCTCGGAAATAACGGGGTTGGAGTAT
*
819652 CCCCGATGAAA
66 CCCCGATAAAA
* *
819663 AATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTGTCCCCTCAGAAATAACAGGGTTGGAGTAT
1 AATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTGTCCCCTCGGAAATAACGGGGTTGGAGTAT
819728 CCCCGAT
66 CCCCGAT
819735 TGTGAAAAGT
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 142 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (76 bp):
AATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTGTCCCCTCGGAAATAACGGGGTTGGAGTAT
CCCCGATAAAA
Found at i:819781 original size:51 final size:50
Alignment explanation
Indices: 819718--819883 Score: 201
Period size: 51 Copynumber: 3.3 Consensus size: 50
819708 AAATAACAGG
*
819718 GTTGGAGTATCCCCGATTGTGAAAAGTCGATGTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAAA-TCGATGTTTTGAAAATAAAATCGGA
* *
819769 GTTGGAGTATCCCCGATTATGGAAAATGGGTGTTTT-AGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAT-GAAAATCGATGTTTTGA-AAATAAAATCGGA
* * * * *
819820 GTTGGAGTATCCCCGATTAAGAGAAATTGATGTTTTGGAAATGAAACCGG-
1 GTTGGAGTATCCCCGATTATGA-AAATCGATGTTTTGAAAATAAAATCGGA
819870 GATTGGAGTATCCC
1 G-TTGGAGTATCCC
819884 ATGATGAAAA
Statistics
Matches: 101, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
50 4 0.04
51 92 0.91
52 5 0.05
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (50 bp):
GTTGGAGTATCCCCGATTATGAAAATCGATGTTTTGAAAATAAAATCGGA
Found at i:822147 original size:20 final size:20
Alignment explanation
Indices: 822122--822213 Score: 108
Period size: 20 Copynumber: 5.0 Consensus size: 20
822112 AAAATGTCTG
822122 AATGTATCGATACATTGTAA
1 AATGTATCGATACATTGTAA
* *
822142 AATGTATCGATACATTATTA
1 AATGTATCGATACATTGTAA
822162 AATGTATCGATAC-------
1 AATGTATCGATACATTGTAA
822175 AATGTATCGATACATTGTAA
1 AATGTATCGATACATTGTAA
*
822195 AATGTATCGATACAATGTA
1 AATGTATCGATACATTGTA
822214 TCGATACAAT
Statistics
Matches: 62, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
13 13 0.21
20 49 0.79
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTGTAA
Found at i:822180 original size:13 final size:13
Alignment explanation
Indices: 822162--822224 Score: 75
Period size: 13 Copynumber: 5.3 Consensus size: 13
822152 TACATTATTA
822162 AATGTATCGATAC
1 AATGTATCGATAC
822175 AATGTATCGATAC
1 AATGTATCGATAC
*
822188 -A--T-T-G-TAA
1 AATGTATCGATAC
822195 AATGTATCGATAC
1 AATGTATCGATAC
822208 AATGTATCGATAC
1 AATGTATCGATAC
822221 AATG
1 AATG
822225 AGCATTGTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
7 2 0.05
8 2 0.05
9 1 0.02
10 2 0.05
11 1 0.02
12 2 0.05
13 32 0.76
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.32
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:822184 original size:33 final size:33
Alignment explanation
Indices: 822142--822221 Score: 142
Period size: 33 Copynumber: 2.4 Consensus size: 33
822132 TACATTGTAA
*
822142 AATGTATCGATACATTATTAAATGTATCGATAC
1 AATGTATCGATACATTATAAAATGTATCGATAC
*
822175 AATGTATCGATACATTGTAAAATGTATCGATAC
1 AATGTATCGATACATTATAAAATGTATCGATAC
822208 AATGTATCGATACA
1 AATGTATCGATACA
822222 ATGAGCATTG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (33 bp):
AATGTATCGATACATTATAAAATGTATCGATAC
Found at i:822234 original size:33 final size:33
Alignment explanation
Indices: 822142--822241 Score: 130
Period size: 33 Copynumber: 3.0 Consensus size: 33
822132 TACATTGTAA
* * *
822142 AATGTATCGATACATTATTAAATGTATCGATAC
1 AATGTATCGATACAATGTAAAATGTATCGATAC
*
822175 AATGTATCGATACATTGTAAAATGTATCGATAC
1 AATGTATCGATACAATGTAAAATGTATCGATAC
* *
822208 AATGTATCGATACAATG-AGCATTGTATCGATAC
1 AATGTATCGATACAATGTA-AAATGTATCGATAC
822241 A
1 A
822242 CCTGGGTAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
32 1 0.02
33 60 0.98
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (33 bp):
AATGTATCGATACAATGTAAAATGTATCGATAC
Found at i:822742 original size:16 final size:16
Alignment explanation
Indices: 822685--822742 Score: 71
Period size: 16 Copynumber: 3.6 Consensus size: 16
822675 TTAGAACCAA
822685 TGTTACAGAATAACTAT
1 TGTT-CAGAATAACTAT
* *
822702 TGTTCAAAATAACTCT
1 TGTTCAGAATAACTAT
* *
822718 TGTTTAGAATAACTTT
1 TGTTCAGAATAACTAT
822734 TGTTCAGAA
1 TGTTCAGAA
822743 CAATTTATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
16 31 0.89
17 4 0.11
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (16 bp):
TGTTCAGAATAACTAT
Found at i:822848 original size:16 final size:16
Alignment explanation
Indices: 822803--822856 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
822793 GCTATTGCTT
822803 AGAATAGTCGTTGTTC
1 AGAATAGTCGTTGTTC
* * * ** *
822819 AAAACAATTTTTGTTT
1 AGAATAGTCGTTGTTC
822835 AGAATAGTCGTTGTTC
1 AGAATAGTCGTTGTTC
822851 AGAATA
1 AGAATA
822857 ACTCCATCAT
Statistics
Matches: 26, Mismatches: 12, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (16 bp):
AGAATAGTCGTTGTTC
Found at i:823865 original size:13 final size:13
Alignment explanation
Indices: 823847--823873 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
823837 ACATTTCTTC
823847 ATGTATCGATACA
1 ATGTATCGATACA
823860 ATGTATCGATACA
1 ATGTATCGATACA
823873 A
1 A
823874 ATAGTGATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:823928 original size:21 final size:21
Alignment explanation
Indices: 823902--823957 Score: 80
Period size: 19 Copynumber: 2.8 Consensus size: 21
823892 CTGCCAAGTT
**
823902 CATGTATCGATACAATTTGTC
1 CATGTATCGATACAATTTGAA
823923 CATGTATCGATAC-A-TTGAA
1 CATGTATCGATACAATTTGAA
823942 CATGTATCGATACAAT
1 CATGTATCGATACAAT
823958 GTATCGATAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 16 0.52
20 2 0.06
21 13 0.42
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (21 bp):
CATGTATCGATACAATTTGAA
Found at i:823961 original size:13 final size:13
Alignment explanation
Indices: 823943--823969 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
823933 TACATTGAAC
823943 ATGTATCGATACA
1 ATGTATCGATACA
823956 ATGTATCGATACA
1 ATGTATCGATACA
823969 A
1 A
823970 GGCAGCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:824582 original size:57 final size:57
Alignment explanation
Indices: 824494--824614 Score: 188
Period size: 57 Copynumber: 2.1 Consensus size: 57
824484 ATTTTTCCTT
824494 TAAAAAAAAAATCTCCCCCTCAAACAGTTATCTTCTCCCCCCTAAGTAAAAATTATG
1 TAAAAAAAAAATCTCCCCCTCAAACAGTTATCTTCTCCCCCCTAAGTAAAAATTATG
** * * * *
824551 TAAAAAAAACGTCTCCCCTTTAAACAGTTATCTTCTCCCCCTTATGTAAAAATTATG
1 TAAAAAAAAAATCTCCCCCTCAAACAGTTATCTTCTCCCCCCTAAGTAAAAATTATG
824608 TAAAAAA
1 TAAAAAA
824615 TTATTTTCAC
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.29
Consensus pattern (57 bp):
TAAAAAAAAAATCTCCCCCTCAAACAGTTATCTTCTCCCCCCTAAGTAAAAATTATG
Found at i:826464 original size:13 final size:13
Alignment explanation
Indices: 826446--826473 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
826436 AAATAGTACC
826446 CAATGTATCGATA
1 CAATGTATCGATA
826459 CAATGTATCGATA
1 CAATGTATCGATA
826472 CA
1 CA
826474 GGGAATGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:832364 original size:20 final size:20
Alignment explanation
Indices: 832336--832373 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
832326 CTATGTATCG
*
832336 ATACAATGTATGGATACATT
1 ATACAATGTATCGATACATT
*
832356 ATACCATGTATCGATACA
1 ATACAATGTATCGATACA
832374 AATAGTGATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (20 bp):
ATACAATGTATCGATACATT
Found at i:832429 original size:21 final size:21
Alignment explanation
Indices: 832403--832458 Score: 80
Period size: 19 Copynumber: 2.8 Consensus size: 21
832393 CTGCCAATTT
**
832403 CATGTATCGATACAATTTGTC
1 CATGTATCGATACAATTTGAA
832424 CATGTATCGATAC-A-TTGAA
1 CATGTATCGATACAATTTGAA
832443 CATGTATCGATACAAT
1 CATGTATCGATACAAT
832459 GTATCGATAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 16 0.52
20 2 0.06
21 13 0.42
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (21 bp):
CATGTATCGATACAATTTGAA
Found at i:832462 original size:13 final size:13
Alignment explanation
Indices: 832444--832470 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
832434 TACATTGAAC
832444 ATGTATCGATACA
1 ATGTATCGATACA
832457 ATGTATCGATACA
1 ATGTATCGATACA
832470 A
1 A
832471 GGCAGCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:836325 original size:2 final size:2
Alignment explanation
Indices: 836318--836363 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
836308 CCAAATCCCA
*
836318 TC TC TC TC TC TC TC TC TG TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
836360 TC TC
1 TC TC
836364 GCTAGTTTGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.48, G:0.02, T:0.50
Consensus pattern (2 bp):
TC
Found at i:837380 original size:18 final size:18
Alignment explanation
Indices: 837357--837397 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
837347 AATTATATGA
*
837357 TATATATTATTTTAT-ATT
1 TATATA-TATCTTATAATT
837375 TATATATATCTTATAATT
1 TATATATATCTTATAATT
837393 TATAT
1 TATAT
837398 CAAAAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (18 bp):
TATATATATCTTATAATT
Found at i:838664 original size:2 final size:2
Alignment explanation
Indices: 838657--838703 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
838647 ACTTGTTACA
*
838657 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
838698 AT AT AT
1 AT AT AT
838704 TAGTGTTAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:839662 original size:20 final size:20
Alignment explanation
Indices: 839637--839732 Score: 84
Period size: 20 Copynumber: 4.6 Consensus size: 20
839627 ATTTTTAAAT
839637 AATAAACATATAAATCACAC
1 AATAAACATATAAATCACAC
* *
839657 AATAAATATTTATAAAATAAACAC
1 AATAAACA--TAT-AAAT-CACAC
* * * * *
839681 AATAAAAATACATATTATAC
1 AATAAACATATAAATCACAC
*
839701 AATAAACACATAAATCACAC
1 AATAAACATATAAATCACAC
839721 AATAAACATATA
1 AATAAACATATA
839733 TAAAATAAAC
Statistics
Matches: 58, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
20 35 0.60
21 3 0.05
22 5 0.09
23 4 0.07
24 11 0.19
ACGTcount: A:0.61, C:0.15, G:0.00, T:0.24
Consensus pattern (20 bp):
AATAAACATATAAATCACAC
Found at i:839676 original size:35 final size:34
Alignment explanation
Indices: 839619--839743 Score: 107
Period size: 35 Copynumber: 3.7 Consensus size: 34
839609 CAATAAACTT
* *
839619 CAATAAAAATTTTTAAATAATAAACATATAAATCACA
1 CAATAAATATTTAT-AA-AATAAACA-ATAAATCACA
*
839656 CAATAAATATTTATAAAATAAAC-A-CAAT-A-A
1 CAATAAATATTTATAAAATAAACAATAAATCACA
* * *
839686 AAATACATA-TTATACAATAAACACATAAATCACA
1 CAATAAATATTTATAAAATAAACA-ATAAATCACA
* *
839720 CAATAAACATATATAAAATAAACA
1 CAATAAATATTTATAAAATAAACA
839744 CTTATTATAC
Statistics
Matches: 70, Mismatches: 12, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
29 12 0.17
30 8 0.11
31 2 0.03
32 6 0.09
33 2 0.03
34 7 0.10
35 19 0.27
36 2 0.03
37 12 0.17
ACGTcount: A:0.62, C:0.13, G:0.00, T:0.26
Consensus pattern (34 bp):
CAATAAATATTTATAAAATAAACAATAAATCACA
Found at i:839704 original size:29 final size:29
Alignment explanation
Indices: 839657--839714 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
839647 TAAATCACAC
839657 AATAAATATTTATAAAATAAACACAATAAA
1 AATAAATATTTATAAAATAAACAC-ATAAA
* *
839687 AATACATA-TTATACAATAAACACATAAA
1 AATAAATATTTATAAAATAAACACATAAA
839715 TCACACAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 5 0.19
29 14 0.54
30 7 0.27
ACGTcount: A:0.64, C:0.10, G:0.00, T:0.26
Consensus pattern (29 bp):
AATAAATATTTATAAAATAAACACATAAA
Found at i:840008 original size:16 final size:16
Alignment explanation
Indices: 839987--840017 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
839977 CAAAAGAGGG
839987 AAAAGAGAAAGAAGAA
1 AAAAGAGAAAGAAGAA
840003 AAAAGAGAAAGAAGA
1 AAAAGAGAAAGAAGA
840018 GAGAGAATCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (16 bp):
AAAAGAGAAAGAAGAA
Found at i:841324 original size:2 final size:2
Alignment explanation
Indices: 841317--841365 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
841307 CTTTAACCTT
841317 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
841359 TA TA TA T
1 TA TA TA T
841366 GAAAGCCTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:842119 original size:2 final size:2
Alignment explanation
Indices: 842112--842139 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
842102 AACAATGTTA
842112 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
842140 GGGTATCCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:843145 original size:124 final size:123
Alignment explanation
Indices: 842873--843122 Score: 324
Period size: 124 Copynumber: 2.0 Consensus size: 123
842863 TTTTATAATT
* * * * *
842873 TGCATTTTAATTTTAATCTGTGTTTATTCATCAATTTCACATGAGATTAACTTTGTTAATAAAAT
1 TGCATTTTAA-CTTAATTTGTTTTTATCCATCAATTTCACATGAGATTAACATTGTTAATAAAAT
* * * * * **
842938 AAAAACAAATATAATAAAATTATAACACATGATTTGTTAATGTAGAATATTTTATAATT
65 AAAAACAAATATAATAAAATTATAACACATGATATGCTAATGAAGAATATTTGACAACG
842997 TGCATTTTAACTTTAATTTGTTTTTATCCATCAATTTCACATGAGATTAACATTGTTAAT-AAAT
1 TGCATTTTAAC-TTAATTTGTTTTTATCCATCAATTTCACATGAGATTAACATTGTTAATAAAAT
* *
843061 TAAAACAAATCTAATAAAATTATAACACAT-AGTATGCTAATGAAGAATATTTGACACACG
65 AAAAACAAATATAATAAAATTATAACACATGA-TATGCTAATGAAGAATATTTGACA-ACG
843121 TG
1 TG
843123 ATATGTTTTT
Statistics
Matches: 109, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
122 1 0.01
123 51 0.47
124 57 0.52
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (123 bp):
TGCATTTTAACTTAATTTGTTTTTATCCATCAATTTCACATGAGATTAACATTGTTAATAAAATA
AAAACAAATATAATAAAATTATAACACATGATATGCTAATGAAGAATATTTGACAACG
Found at i:843432 original size:2 final size:2
Alignment explanation
Indices: 843419--843451 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
843409 AGAATGTGCA
*
843419 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
843452 CTACAAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:844064 original size:2 final size:2
Alignment explanation
Indices: 844057--844086 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
844047 TAAATCCCTC
844057 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
844087 GAAGATTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:844305 original size:2 final size:2
Alignment explanation
Indices: 844298--844342 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
844288 GCAAAGCGTT
844298 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
844340 TA T
1 TA T
844343 GGAGAGACAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:846222 original size:28 final size:28
Alignment explanation
Indices: 846151--846230 Score: 76
Period size: 28 Copynumber: 2.8 Consensus size: 28
846141 ATTTAAATAA
*
846151 GATATAAATATATAAAAT-AAATTTGATAT
1 GATA-AAATATA-AAAATAAAATATGATAT
* *
846180 -AAAAAATAATTAAAATAAAATATGATAT
1 GATAAAAT-ATAAAAATAAAATATGATAT
846208 GATAAAATATAAAAA-AATAATAT
1 GATAAAATATAAAAATAA-AATAT
846231 AAATGCAACA
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
27 11 0.26
28 25 0.60
29 6 0.14
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (28 bp):
GATAAAATATAAAAATAAAATATGATAT
Found at i:849681 original size:25 final size:28
Alignment explanation
Indices: 849610--849696 Score: 81
Period size: 30 Copynumber: 3.1 Consensus size: 28
849600 GATAATTAAT
** *
849610 TTATATAATATTATTTTTAAAATATTTATA
1 TTATATAATATTATAATT-ATAT-TTTATA
*
849640 TTATATAATATTGTAATTAT-TTTTATA
1 TTATATAATATTATAATTATATTTTATA
* *
849667 TTATAT-TTA-TATAATTATATTTAATA
1 TTATATAATATTATAATTATATTTTATA
849693 TTAT
1 TTAT
849697 TAAATTTATT
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
25 8 0.16
26 12 0.24
27 12 0.24
28 1 0.02
29 1 0.02
30 15 0.31
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (28 bp):
TTATATAATATTATAATTATATTTTATA
Found at i:849687 original size:36 final size:35
Alignment explanation
Indices: 849619--849700 Score: 89
Period size: 36 Copynumber: 2.3 Consensus size: 35
849609 TTTATATAAT
849619 ATTATTTTTAAAATATTTATATTATATAATATTGTA
1 ATTATTTTTAAAATATTTATATTATATAATATT-TA
* *
849655 ATTATTTTTATATTATATTTATA-TA-ATTATATTTA
1 ATTATTTTTA-A-AATATTTATATTATATAATATTTA
*
849690 A-TATTATTAAA
1 ATTATTTTTAAA
849701 TTTATTAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
33 1 0.03
34 7 0.17
35 3 0.08
36 17 0.43
37 3 0.08
38 9 0.22
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.57
Consensus pattern (35 bp):
ATTATTTTTAAAATATTTATATTATATAATATTTA
Found at i:856927 original size:22 final size:23
Alignment explanation
Indices: 856881--856927 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
856871 AATTTTTATT
*
856881 ATTTTATGAATTTTCAAACATATA
1 ATTTTAT-AATTTTCAAACAAATA
*
856905 ATTTTAT-ATTTTCAAATAAATA
1 ATTTTATAATTTTCAAACAAATA
856927 A
1 A
856928 AATTAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 14 0.67
24 7 0.33
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.47
Consensus pattern (23 bp):
ATTTTATAATTTTCAAACAAATA
Found at i:859386 original size:15 final size:15
Alignment explanation
Indices: 859345--859409 Score: 50
Period size: 15 Copynumber: 4.5 Consensus size: 15
859335 AATTCAAAAG
*
859345 ATTATTT-TA-TATT
1 ATTATTTATATTATA
859358 ATTATTTATATTATA
1 ATTATTTATATTATA
859373 ATTACTTTAT-TTAT-
1 ATTA-TTTATATTATA
*
859387 ATATATATATATATATA
1 AT-TATTTATAT-TATA
859404 A-TATTT
1 ATTATTT
859410 TTCAATCTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
13 7 0.17
14 8 0.19
15 18 0.43
16 8 0.19
17 1 0.02
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (15 bp):
ATTATTTATATTATA
Found at i:859552 original size:104 final size:114
Alignment explanation
Indices: 859441--859695 Score: 316
Period size: 115 Copynumber: 2.3 Consensus size: 114
859431 CAAAATCCCC
** *
859441 TTAA-AATAATTATA-TTCCTCTCTTCTTCTTTTTCTT-TTTAGA-TATTT-TATTTATATATA-
1 TTAATAATAATTATATTTCCT-TCTTCTTCTTTTTCTTAGATAGATTATTTATATATATATATAT
*
859500 AAATGTATTTTTCT-AAC-T-T-ACTTAGCTTTATTTTCAACAAGATCTC-
65 AAATGTATTTTT-TAAACTTATAACTTAACTTTATTTTCAACAAGATCTCG
* *
859546 TTAAATAATAATTATATTTCCTACTTCTTCTTTTTCTTAGATATATTATTTATATATATATATAT
1 TT-AATAATAATTATATTTCCTTCTTCTTCTTTTTCTTAGATAGATTATTTATATATATATATAT
* *
859611 AAATGTATTTTTTAAACTTATAAAGTTAACTTTATTTTGAACAAGATCTCG
65 AAATGTATTTTTTAAACTTAT-AACTTAACTTTATTTTCAACAAGATCTCG
*
859662 TTAATAATAATTATATTTCCTTCTTTTTCTTTTT
1 TTAATAATAATTATATTTCCTTCTTCTTCTTTTT
859696 TTTCTCCTTC
Statistics
Matches: 127, Mismatches: 10, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
105 2 0.02
106 2 0.02
107 25 0.20
108 8 0.06
109 5 0.04
110 12 0.09
111 15 0.12
112 1 0.01
113 1 0.01
115 54 0.43
116 2 0.02
ACGTcount: A:0.31, C:0.12, G:0.04, T:0.53
Consensus pattern (114 bp):
TTAATAATAATTATATTTCCTTCTTCTTCTTTTTCTTAGATAGATTATTTATATATATATATATA
AATGTATTTTTTAAACTTATAACTTAACTTTATTTTCAACAAGATCTCG
Found at i:859920 original size:4 final size:4
Alignment explanation
Indices: 859913--859971 Score: 56
Period size: 4 Copynumber: 15.5 Consensus size: 4
859903 AATAATTATA
*
859913 TTTC TTTC TTTC TTTC TTTC -TTC TTCTT TTTC TTT- TTT- TTTCC TTT-
1 TTTC TTTC TTTC TTTC TTTC TTTC TT-TC TTTC TTTC TTTC TTT-C TTTC
859959 TTT- TTTC TTTC TT
1 TTTC TTTC TTTC TT
859972 CTTCTTCTTC
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
3 15 0.31
4 27 0.56
5 6 0.12
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (4 bp):
TTTC
Found at i:859930 original size:12 final size:11
Alignment explanation
Indices: 859913--859971 Score: 63
Period size: 11 Copynumber: 5.5 Consensus size: 11
859903 AATAATTATA
859913 TTTCTTTCTTTC
1 TTTCTTT-TTTC
*
859925 TTTCTTTCTTC
1 TTTCTTTTTTC
859936 -TTC-TTTTTC
1 TTTCTTTTTTC
859945 TTT-TTTTTTCC
1 TTTCTTTTTT-C
859956 TTT-TTTTTTC
1 TTTCTTTTTTC
859966 TTTCTT
1 TTTCTT
859972 CTTCTTCTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
9 5 0.12
10 14 0.34
11 15 0.37
12 7 0.17
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTCTTTTTTC
Found at i:863607 original size:1 final size:1
Alignment explanation
Indices: 863601--863686 Score: 73
Period size: 1 Copynumber: 86.0 Consensus size: 1
863591 GTCATCCGCC
* * * * * * * * *
863601 AAAAAAAAAACAAACAAAACAAAACAAAAAAAGAGACAAAAAAAAAAAAAAATAAAACAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
863666 AAAACAAAAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAA
863687 CAAACAAACA
Statistics
Matches: 63, Mismatches: 22, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 63 1.00
ACGTcount: A:0.87, C:0.09, G:0.02, T:0.01
Consensus pattern (1 bp):
A
Found at i:863639 original size:17 final size:17
Alignment explanation
Indices: 863602--863694 Score: 102
Period size: 17 Copynumber: 5.5 Consensus size: 17
863592 TCATCCGCCA
*
863602 AAAAAAAAACAAACAAAAC
1 AAAACAAAA-AAA-AAAAC
* *
863621 AAAACAAAAAAAGAGAC
1 AAAACAAAAAAAAAAAC
*
863638 AAAA-AAAAAAAAAAAT
1 AAAACAAAAAAAAAAAC
863654 AAAACAAAAAAAAAAAC
1 AAAACAAAAAAAAAAAC
863671 AAAA-ACAAAAAAAAAAC
1 AAAACA-AAAAAAAAAAC
863688 -AAACAAA
1 AAAACAAA
863695 CAAACAACAA
Statistics
Matches: 64, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
16 19 0.30
17 34 0.53
18 3 0.05
19 8 0.12
ACGTcount: A:0.86, C:0.11, G:0.02, T:0.01
Consensus pattern (17 bp):
AAAACAAAAAAAAAAAC
Found at i:863658 original size:33 final size:31
Alignment explanation
Indices: 863603--863707 Score: 111
Period size: 33 Copynumber: 3.2 Consensus size: 31
863593 CATCCGCCAA
*
863603 AAAAAAAACAAACAAAACAAAACAAAAAAAGAGAC
1 AAAAAAAA-AAA-AAAA-AAAACAAAAAAA-AAAC
863638 AAAAAAAAAAAAAAATAAAACAAAAAAAAAAAC
1 AAAAAAAAAAAAAAA-AAAAC-AAAAAAAAAAC
* * *
863671 AAAAACAAAAAAAAAACAAACAAACAAACAAC
1 AAAAA-AAAAAAAAAAAAAACAAAAAAAAAAC
863703 AAAAA
1 AAAAA
863708 GGGTCCGGAT
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
32 14 0.22
33 21 0.33
34 20 0.32
35 8 0.13
ACGTcount: A:0.85, C:0.12, G:0.02, T:0.01
Consensus pattern (31 bp):
AAAAAAAAAAAAAAAAAAACAAAAAAAAAAC
Found at i:863658 original size:38 final size:35
Alignment explanation
Indices: 863601--863708 Score: 112
Period size: 37 Copynumber: 2.9 Consensus size: 35
863591 GTCATCCGCC
* *
863601 AAAAAAAAAACAAACAAAACAAAACAAAAAAAGAGA
1 AAAAAAAAAAAAAAAAAAACAAAACAAAAAAAGA-A
*
863637 CAAAAAAAAAAAAAAATAAAACAAAA-AAAAAAACAA
1 -AAAAAAAAAAAAAAA-AAAACAAAACAAAAAAAGAA
863673 AAACAAAAAAAAAACAAACAAAC-AAACAACAAAAAG
1 AAA-AAAAAAAAAA-AAA-AAACAAAACAA-AAAAAG
863709 GGTCCGGATG
Statistics
Matches: 61, Mismatches: 4, Indels: 11
0.80 0.05 0.14
Matches are distributed among these distances:
35 3 0.05
36 15 0.25
37 29 0.48
38 14 0.23
ACGTcount: A:0.84, C:0.12, G:0.03, T:0.01
Consensus pattern (35 bp):
AAAAAAAAAAAAAAAAAAACAAAACAAAAAAAGAA
Found at i:863691 original size:4 final size:4
Alignment explanation
Indices: 863608--863705 Score: 51
Period size: 4 Copynumber: 24.8 Consensus size: 4
863598 GCCAAAAAAA
* * * * * * *
863608 AAAC AAAC AAAAC AAAAC AAAA AAAG AGAC AAAA AAAA AAAA AAATA AAAC
1 AAAC AAAC -AAAC -AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAA-C AAAC
* * *
863659 AAAA AAAA AAAC -AA- AAAC AAA- AAAA AAAC AAAC AAAC AAAC -AAC
1 AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC
863703 AAA
1 AAA
863706 AAGGGTCCGG
Statistics
Matches: 78, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
3 10 0.13
4 55 0.71
5 13 0.17
ACGTcount: A:0.84, C:0.13, G:0.02, T:0.01
Consensus pattern (4 bp):
AAAC
Found at i:865372 original size:19 final size:18
Alignment explanation
Indices: 865326--865411 Score: 74
Period size: 19 Copynumber: 4.8 Consensus size: 18
865316 TTTCAACAAT
*
865326 TTGTATCGATACAAACTG
1 TTGTATCGATACAAAGTG
865344 TAACTGTATCGATACATAAGTG
1 T---TGTATCGATACA-AAGTG
865366 TTGTATCGATAC-AA---
1 TTGTATCGATACAAAGTG
*
865380 -TGTATCGATACATAAGTT
1 TTGTATCGATACA-AAGTG
865398 TTGTATCGATACAA
1 TTGTATCGATACAA
865412 TGTATTGCTA
Statistics
Matches: 57, Mismatches: 1, Indels: 20
0.73 0.01 0.26
Matches are distributed among these distances:
13 11 0.19
15 2 0.04
17 2 0.04
18 2 0.04
19 23 0.40
21 12 0.21
22 5 0.09
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (18 bp):
TTGTATCGATACAAAGTG
Found at i:865385 original size:13 final size:13
Alignment explanation
Indices: 865367--865391 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
865357 ACATAAGTGT
865367 TGTATCGATACAA
1 TGTATCGATACAA
865380 TGTATCGATACA
1 TGTATCGATACA
865392 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:865389 original size:32 final size:32
Alignment explanation
Indices: 865348--865416 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
865338 AAACTGTAAC
865348 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
865380 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
865412 TGTAT
1 TGTAT
865417 TGCTACGAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:865481 original size:13 final size:13
Alignment explanation
Indices: 865463--865487 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
865453 ATTACTCAAA
865463 TGTATCGATACAT
1 TGTATCGATACAT
865476 TGTATCGATACA
1 TGTATCGATACA
865488 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:879409 original size:1 final size:1
Alignment explanation
Indices: 879405--879494 Score: 72
Period size: 1 Copynumber: 90.0 Consensus size: 1
879395 TGTCATCCAT
* * * * * * * * * *
879405 AAAAAAAAAACAAAACAAAACAAAACAAAAAAAGAGACAAAAAAAAACAAAAAAAAAACAAAACA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
879470 AAAAAAAAACAAAAACAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
879495 CAAACAAACA
Statistics
Matches: 65, Mismatches: 24, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 65 1.00
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:879424 original size:10 final size:10
Alignment explanation
Indices: 879406--879506 Score: 89
Period size: 10 Copynumber: 9.8 Consensus size: 10
879396 GTCATCCATA
*
879406 AAAAAAAAAC
1 AAAACAAAAC
879416 AAAACAAAAC
1 AAAACAAAAC
*
879426 AAAACAAAAA
1 AAAACAAAAC
*
879436 AAGAGACAAAAA
1 AA-A-ACAAAAC
*
879448 AAAACAAAAAA
1 AAAAC-AAAAC
879459 AAAACAAAAC
1 AAAACAAAAC
*
879469 AAAAAAAAAAC
1 -AAAACAAAAC
*
879480 AAAAACAAAAA
1 -AAAACAAAAC
879491 AAAAC-AAAC
1 AAAACAAAAC
879500 -AAACAAA
1 AAAACAAA
879507 CAACAAAAAG
Statistics
Matches: 79, Mismatches: 7, Indels: 11
0.81 0.07 0.11
Matches are distributed among these distances:
8 4 0.05
9 5 0.06
10 31 0.39
11 30 0.38
12 9 0.11
ACGTcount: A:0.85, C:0.13, G:0.02, T:0.00
Consensus pattern (10 bp):
AAAACAAAAC
Found at i:879435 original size:27 final size:26
Alignment explanation
Indices: 879405--879515 Score: 132
Period size: 27 Copynumber: 4.1 Consensus size: 26
879395 TGTCATCCAT
*
879405 AAAAAAAAAACAAAACAAAACAAAACA
1 AAAAAAAAAACAAAAAAAAACAAAA-A
* *
879432 AAAAAAGAGACAAAAAAAAACAAAAA
1 AAAAAAAAAACAAAAAAAAACAAAAA
*
879458 AAAAACAAAACAAAAAAAAAACAAAAA
1 AAAAAAAAAAC-AAAAAAAAACAAAAA
* *
879485 CAAAAAAAAACAAACAAACAAACAACAA
1 AAAAAAAAAACAAA-AAA-AAACAAAAA
879513 AAA
1 AAA
879516 GGCTCCGGAT
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
26 12 0.17
27 49 0.69
28 10 0.14
ACGTcount: A:0.85, C:0.14, G:0.02, T:0.00
Consensus pattern (26 bp):
AAAAAAAAAACAAAAAAAAACAAAAA
Found at i:879463 original size:43 final size:43
Alignment explanation
Indices: 879405--879509 Score: 142
Period size: 43 Copynumber: 2.4 Consensus size: 43
879395 TGTCATCCAT
* * *
879405 AAAAA-AAAAACAAAACAAAACAAAACAAAAAA-AGAGACAAAA
1 AAAAACAAAAAAAAAACAAAACAAAA-AAAAAACAAAAACAAAA
879447 AAAAACAAAAAAAAAACAAAACAAAAAAAAAACAAAAACAAAA
1 AAAAACAAAAAAAAAACAAAACAAAAAAAAAACAAAAACAAAA
*
879490 AAAAACAAACAAACAAACAA
1 AAAAACAAA-AAAAAAACAA
879510 CAAAAAGGCT
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
42 11 0.20
43 36 0.64
44 9 0.16
ACGTcount: A:0.85, C:0.13, G:0.02, T:0.00
Consensus pattern (43 bp):
AAAAACAAAAAAAAAACAAAACAAAAAAAAAACAAAAACAAAA
Found at i:879507 original size:22 final size:21
Alignment explanation
Indices: 879405--879515 Score: 127
Period size: 22 Copynumber: 5.2 Consensus size: 21
879395 TGTCATCCAT
*
879405 AAAAA-AAAAACAAAACAAAA
1 AAAAACAAAAAAAAAACAAAA
* *
879425 CAAAACAAAAAAAGAGACAAAA
1 AAAAACAAAAAAA-AAACAAAA
879447 AAAAACAAAAAAAAAACAAAA
1 AAAAACAAAAAAAAAACAAAA
879468 CAAAAA-AAAAACAAAAACAAAA
1 -AAAAACAAAAA-AAAAACAAAA
* *
879490 AAAAACAAACAAACAAACAACA
1 AAAAACAAA-AAAAAAACAAAA
879512 AAAA
1 AAAA
879516 GGCTCCGGAT
Statistics
Matches: 78, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
20 4 0.05
21 23 0.29
22 49 0.63
23 2 0.03
ACGTcount: A:0.85, C:0.14, G:0.02, T:0.00
Consensus pattern (21 bp):
AAAAACAAAAAAAAAACAAAA
Found at i:881180 original size:19 final size:18
Alignment explanation
Indices: 881156--881218 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
881146 AAACTGTAAC
881156 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
881175 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
881188 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
881207 TGTATCGATACA
1 TGTATCGATACA
881219 ATGTATCGCT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
15 2 0.05
17 2 0.05
19 23 0.61
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:881193 original size:13 final size:13
Alignment explanation
Indices: 881175--881199 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
881165 ACATAAGTGT
881175 TGTATCGATACAA
1 TGTATCGATACAA
881188 TGTATCGATACA
1 TGTATCGATACA
881200 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:881197 original size:32 final size:32
Alignment explanation
Indices: 881156--881226 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
881146 AAACTGTAAC
881156 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
881188 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
881220 TGTATCG
1 TGTATCG
881227 CTACGAAGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:881289 original size:13 final size:13
Alignment explanation
Indices: 881271--881295 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
881261 ATTACTCAAA
881271 TGTATCGATACAT
1 TGTATCGATACAT
881284 TGTATCGATACA
1 TGTATCGATACA
881296 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:886991 original size:22 final size:21
Alignment explanation
Indices: 886949--887008 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
886939 AGACTTATAG
886949 ATTTTTAATTATATTTAATTA
1 ATTTTTAATTATATTTAATTA
*
886970 ATTTTTAGTCTAT-TTTATATT-
1 ATTTTTAAT-TATATTTA-ATTA
*
886991 AGTTTT-ATT-TATTTAATT
1 ATTTTTAATTATATTTAATT
887009 TATAATTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
18 4 0.12
19 5 0.15
20 1 0.03
21 17 0.52
22 6 0.18
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (21 bp):
ATTTTTAATTATATTTAATTA
Found at i:891604 original size:51 final size:51
Alignment explanation
Indices: 891539--891655 Score: 166
Period size: 51 Copynumber: 2.3 Consensus size: 51
891529 AAAATAATGG
* *
891539 GGTTGGAGTATCCCCGATTATGAGAAATTAATATTTT-AGAAATAAGGCCG-
1 GGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGA-AAATAAAGCCGT
* *
891589 GCGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGAAAATAAAGCCGT
1 G-GTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGAAAATAAAGCCGT
891641 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
891656 TCGGAAATAA
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
50 1 0.02
51 56 0.95
52 2 0.03
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGAAAATAAAGCCGT
Found at i:891690 original size:28 final size:27
Alignment explanation
Indices: 891641--891710 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 27
891631 ATAAAGCCGT
891641 GGTTGGAGTATCCCCTCGGAAATAACGA
1 GGTTGGAGTAT-CCCTCGGAAATAACGA
* *
891669 GGTTGGAGTATCCCT-GATGAAATAAGGG
1 GGTTGGAGTATCCCTCG--GAAATAACGA
*
891697 GGTTGGAGTGTCCC
1 GGTTGGAGTATCCC
891711 CGATTGTGAG
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.03
27 4 0.11
28 32 0.86
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.24
Consensus pattern (27 bp):
GGTTGGAGTATCCCTCGGAAATAACGA
Found at i:891767 original size:51 final size:51
Alignment explanation
Indices: 891698--891813 Score: 171
Period size: 51 Copynumber: 2.3 Consensus size: 51
891688 AAATAAGGGG
* *
891698 GTTGGAGTGTCCCCGATTGT-GAGAAATTAGTGTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGGAG-AATTAGTGTTTTAGAAATAAAATCGGA
* * *
891749 GTTGGAGTATCCCTGATTGTGGAGAATTGGTGTTTTAGAAATAAAATCGGG
1 GTTGGAGTATCCCCGATTGTGGAGAATTAGTGTTTTAGAAATAAAATCGGA
891800 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
891814 TCGGAAATAA
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
51 55 0.95
52 3 0.05
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.32
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGGAGAATTAGTGTTTTAGAAATAAAATCGGA
Found at i:891804 original size:158 final size:158
Alignment explanation
Indices: 891516--891842 Score: 401
Period size: 158 Copynumber: 2.1 Consensus size: 158
891506 ATCGGGATTA
*
891516 GAGTATCCCCGTGAAAATAATGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAA
1 GAGTATCCCCGTGAAAATAAGGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAA
** * * *
891581 TAAGGCCGGCGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGAAAATAAAGCCGTGGTTG
66 TAAAACCGGAGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGAAAATAAAACCGGGGTTG
*
891646 GAGTATCCCCTCGGAAATAACGAGG-TTG
131 GAGTATCCCCTCGGAAATAAC-AGGATGG
* * * * * *
891674 GAGTATCCCTGATG-AAATAAGGGGGTTGGAGTGTCCCCGATTGTGAGAAATTAGTGTTTTGGAA
1 GAGTATCCCCG-TGAAAATAAGGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAA
* * * *** * *
891738 ATAAAATCGGAGTTGGAGTATCCCTGATTGTG-GAGAATTGGTGTTTT-AGAAATAAAATCGGGG
65 ATAAAACCGGAGTTGAAGTATCCCCGATTGTGAGA-AATCAATATTTTGA-AAATAAAACCGGGG
891801 TTGGAGTATCCCCTCGGAAATAACAGGATGG
128 TTGGAGTATCCCCTCGGAAATAACAGGATGG
891832 GAGTATCCCCG
1 GAGTATCCCCG
891843 ATTATGAAAA
Statistics
Matches: 143, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
157 6 0.04
158 135 0.94
159 2 0.01
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (158 bp):
GAGTATCCCCGTGAAAATAAGGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAA
TAAAACCGGAGTTGAAGTATCCCCGATTGTGAGAAATCAATATTTTGAAAATAAAACCGGGGTTG
GAGTATCCCCTCGGAAATAACAGGATGG
Found at i:891996 original size:80 final size:79
Alignment explanation
Indices: 891749--892012 Score: 307
Period size: 79 Copynumber: 3.3 Consensus size: 79
891739 TAAAATCGGA
* * * * ** * *
891749 GTTGGAGTATCCCTGATTGTGGAGAATTGGTGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCC
1 GTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCC
891814 TCGGAAATAACAGG
66 TCGGAAATAACAGG
* * * * **
891828 ATGGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAACATCCCC
1 GTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCC
* *
891893 TCAGAAATAACGGG
66 TCGGAAATAACAGG
* * *
891907 GTTAGAGTATTCCCGATTAT-AAGAAATTAATATTTTAGAAATAAAGCCGGGAGTTGGAGTATCC
1 GTTGGAGTATCCCCGATTATGAA-AAATTAATATTTTAGAAATAAAACCGGG-GTTGGAGTATCC
*
891971 CCTTGGAAATAACAGG
64 CCTCGGAAATAACAGG
*
891987 GTTGGAGTATCCCCGA-GATGAAAAAT
1 GTTGGAGTATCCCCGATTATGAAAAAT
892013 CTAGAAATTT
Statistics
Matches: 155, Mismatches: 27, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
78 2 0.01
79 114 0.74
80 39 0.25
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (79 bp):
GTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCC
TCGGAAATAACAGG
Found at i:894427 original size:13 final size:13
Alignment explanation
Indices: 894405--894462 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 13
894395 GGCAGTAGCT
*
894405 TTGTAGCGATACA
1 TTGTATCGATACA
894418 TTGTATCGATACAAAA
1 TTGTATCGATAC---A
894434 CTTAGGTATCGATACA
1 -TT--GTATCGATACA
894450 TTGTATCGATACA
1 TTGTATCGATACA
894463 ACACTTATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 22 0.58
15 2 0.05
16 2 0.05
17 2 0.05
19 10 0.26
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:894444 original size:19 final size:18
Alignment explanation
Indices: 894420--894483 Score: 66
Period size: 19 Copynumber: 3.7 Consensus size: 18
894410 GCGATACATT
894420 GTATCGATACAAAACTTA
1 GTATCGATACAAAACTTA
894438 GGTATCGATAC---A-TT-
1 -GTATCGATACAAAACTTA
*
894452 GTATCGATACAACACTTA
1 GTATCGATACAAAACTTA
894470 TGTATCGATACAAA
1 -GTATCGATACAAA
894484 TTGTTTGAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 10 0.26
15 2 0.05
16 2 0.05
17 2 0.05
19 22 0.58
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (18 bp):
GTATCGATACAAAACTTA
Found at i:894452 original size:32 final size:32
Alignment explanation
Indices: 894411--894481 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
894401 AGCTTTGTAG
894411 CGATACATTGTATCGATACAAAACTTAGGTAT
1 CGATACATTGTATCGATACAAAACTTAGGTAT
* *
894443 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTAGGTAT
894475 CGATACA
1 CGATACA
894482 AATTGTTTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTAGGTAT
Found at i:896313 original size:15 final size:15
Alignment explanation
Indices: 896293--896321 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
896283 TTAGTAATTA
896293 TATCGATACAATATG
1 TATCGATACAATATG
896308 TATCGATACAATAT
1 TATCGATACAATAT
896322 TGATTGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.34
Consensus pattern (15 bp):
TATCGATACAATATG
Found at i:900144 original size:20 final size:20
Alignment explanation
Indices: 900088--900146 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
900078 CTTTGTATTG
*
900088 ATAC-ATTGTATCGATAAAT
1 ATACAATTGTATCGATACAT
*
900107 ACACAATTGTATCGATACAT
1 ATACAATTGTATCGATACAT
900127 ATACAATTGTATCGATACAT
1 ATACAATTGTATCGATACAT
900147 GAAACTGGCA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
19 3 0.08
20 33 0.92
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (20 bp):
ATACAATTGTATCGATACAT
Found at i:908484 original size:20 final size:20
Alignment explanation
Indices: 908461--908527 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 20
908451 ACATTATGAT
908461 TTGTATCGATACATACACAA
1 TTGTATCGATACATACACAA
908481 TTGTATCG----AT--AC-A
1 TTGTATCGATACATACACAA
*
908494 TTGTATCAATACATACACAA
1 TTGTATCGATACATACACAA
908514 TTGTATCGATACAT
1 TTGTATCGATACAT
908528 GAAACTAGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
13 8 0.21
14 2 0.05
16 2 0.05
17 2 0.05
19 2 0.05
20 22 0.58
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.34
Consensus pattern (20 bp):
TTGTATCGATACATACACAA
Found at i:908506 original size:33 final size:33
Alignment explanation
Indices: 908461--908527 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
908451 ACATTATGAT
*
908461 TTGTATCGATACATACACAATTGTATCGATACA
1 TTGTATCAATACATACACAATTGTATCGATACA
908494 TTGTATCAATACATACACAATTGTATCGATACA
1 TTGTATCAATACATACACAATTGTATCGATACA
908527 T
1 T
908528 GAAACTAGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.34
Consensus pattern (33 bp):
TTGTATCAATACATACACAATTGTATCGATACA
Found at i:911869 original size:20 final size:20
Alignment explanation
Indices: 911844--911897 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
911834 GTTGGACTCA
*
911844 ATGTATCAATACATTTATGG
1 ATGTATCGATACATTTATGG
911864 ATGTATCGATACATTTATGG
1 ATGTATCGATACATTTATGG
911884 ATGTATCGATACAT
1 ATGTATCGATACAT
911898 CCTGAATTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATTTATGG
Found at i:918749 original size:52 final size:50
Alignment explanation
Indices: 918638--918875 Score: 230
Period size: 51 Copynumber: 4.6 Consensus size: 50
918628 TGAAAATAAT
* **
918638 GGGGTTGGAGTATCCCCGATTATGAGAAATTGATGTTTTTTG-AAATAAAATT
1 GGGGTTGGAGTATCCCCGATTATGAGAAATTG--G-TGTTTGAAAATAAAACC
**
918690 GAAGTTGGAGTATCCCCGATTATGAGAAATTGGTGTCTTGAAAATGAAAACC
1 GGGGTTGGAGTATCCCCGATTATGAGAAATTGGTGT-TTGAAAAT-AAAACC
** * *
918742 GGGGTTGGAGTATCCTTGATTGTG-GAAAGTTGGTGTTTCGAAAATAAAATC
1 GGGGTTGGAGTATCCCCGATTATGAGAAA-TTGGTGTTT-GAAAATAAAACC
* * * *
918793 GGAGTTGGAGTATCCCCGATTGTG-GAAAATTAGTGTTTTAAGAATAAAACC
1 GGGGTTGGAGTATCCCCGATTATGAG-AAATTGGTGTTTGAA-AATAAAACC
* * *
918844 GGGGTTGGAGTACCCCCGATTTTGAAAAATTG
1 GGGGTTGGAGTATCCCCGATTATGAGAAATTG
918876 AGAAACTTAA
Statistics
Matches: 156, Mismatches: 22, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
49 2 0.01
50 6 0.04
51 79 0.51
52 69 0.44
ACGTcount: A:0.31, C:0.11, G:0.27, T:0.31
Consensus pattern (50 bp):
GGGGTTGGAGTATCCCCGATTATGAGAAATTGGTGTTTGAAAATAAAACC
Found at i:922114 original size:55 final size:55
Alignment explanation
Indices: 921912--922270 Score: 373
Period size: 55 Copynumber: 6.3 Consensus size: 55
921902 AAGGAGAGCA
* * *
921912 TCCTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTTTGGGCTTTAAAAAAGAAAGACG
1 TCCTGCTCTTTGAGGACT-GGAAAATGCCACCAACTTGTGTGGGCTTT------GAAAGGCG
** *
921973 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGTAAAGAGAAAGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCG
* * ** *
922034 TCCTCCTCTTTGAGGATTACAAAATGCCACTAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
922089 TCCTACTCTTTAAGGACTGGAAAATGCCACCAACTAGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * * *
922144 TCCTGCTCTTTGAGGACCGGGAAGTGCCACCAACTTGTAT-GGCTTTAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
922198 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAATTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
922253 TCCTGCTCTATGAGGACT
1 TCCTGCTCTTTGAGGACT
922271 AAAGTGCGAA
Statistics
Matches: 256, Mismatches: 33, Indels: 24
0.82 0.11 0.08
Matches are distributed among these distances:
53 3 0.01
54 45 0.18
55 114 0.45
57 2 0.01
58 4 0.02
59 2 0.01
60 2 0.01
61 84 0.33
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:922497 original size:55 final size:54
Alignment explanation
Indices: 922417--939591 Score: 7355
Period size: 55 Copynumber: 307.4 Consensus size: 54
922407 GAAAGCATTT
* *
922417 TGCTCTTTGAGGACTGTAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
922472 TGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCGTCC
* * *
922532 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGACGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
922587 CGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
922642 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
922697 TACTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTATGAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCT-T----TG-AAAGGCGTCC
* * *
922758 TGCTCATTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
*
922813 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * * * *
922868 TGCTCTTTGAGGAC-AAAAGGGCGA--AA--GGAGAGAGCGTCCT-ACA--C-T-T
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGC-T-TTGAAAGGCGTCC
***** * ** ** ** * * *
922914 TGAGGACTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGCCGTCA
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * * * *
922968 TGCTATTTGAGAACTAGAAGGTGCCATCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* *
923029 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * *
923084 AGCTCTTTGAGGACTAGAAAATGCCACCAACTCGTATGGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
** * *
923139 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGGTGTCA
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
923194 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGC-TT---T-G-AAAGGCGTCC
* * * * * * *
923255 TACTCTTTAAGGGCTGGAAGGTGCCACCAACTTGTGTGGGCATTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* *
923316 TGCTCTTTGAGGACTGTAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-C
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
923370 TAGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGTGCTTTGAAAGGCGTCC
1 T-GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * *
923426 TGCTCTTTGAGGACTAGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAGACATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
923481 TGCTCTTCGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * **** *
923536 TGCTCTTTGAGGACT-AACGGGCGA--AA--GGAGAGAGC---GTCCTGC-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** *
923582 TGAGGAGTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGGCGTCC
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * *
923636 TGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* * *
923697 TGCTCTTTGAGGACTGCAAAATGCCACCAACTCT-TGTAGGCTTTGAAAGGCGTTC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACT-TGTGTGGGCTTTGAAAGGCGTCC
* *
923752 TGCTCTTTGAGGACTGAAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
923807 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCAG-GTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACT-TGTGTGGGCTTTGAAAGGCGTCC
* * * *
923862 TGCTCTTTAAAGACTGAATGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCC
1 TGCTCTTTGAGGACTGAA-AGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
* * * *
923923 TGCTCTTTGAGGACTAGGAAGTGCGACCAACTTGTGTGGGCTTTAAAAGGTGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
923978 TACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCGTCC
* * *
924038 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGACGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
924093 CGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTAGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
924148 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
924203 TACTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
* * * *
924264 TGCTCATTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
924319 TGCTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * *** *
924374 TGCTCTTTGAGGACTG-AAGGGCGA--AA--GGAGAGAGC-GTCCTA--C-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** * *
924420 TGAGGACTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGGCGTCG
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * * *
924474 TGCTCTTTGAGAACTGGAAGGTGCCATCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* *
924535 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * *
924590 TGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTATGGGCTTTGAAAGACATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
** * *
924645 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGGTGTCA
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
924700 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGC-TT---T-G-AAAGGCGTCC
* * * * *
924761 TGCTCTTTGAGGGCTGGAAGGTGCCACCAACTTGTGTGGGCATTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* *
924822 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-C
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
924876 TAGCTCTTTAAGGACTAGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 T-GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * *
924932 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAGACATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
924987 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * * **** *
925042 TGCTCTTTAAGGACT-AACGGGCGA--AA--GGAGAGAGC---GTCCTGC-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** * *
925088 TGAGGAGTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGACGTCC
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * *
925142 TGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* *
925203 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
925258 TGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
925313 TGCTCTTTGAGGACTGAAAGGTACCACCAACTCGTGTGGGCTTTGAAATGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
925368 TGCTCTTTGAGGCCTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
* * *
925429 TGCTTTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTT-AAATGGTGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAA-GGCGTCC
* * * *
925484 TGCTCTTTGAGGACTGAAAGGTGCCA-CAACTTGTGTGGGATTTTAAAAGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * ** * ** ** *
925538 TACTCTTTGAGGACT-AAAGGGCGAAAGGAGAGCAT-CCTGCTCTTTGAGGACTAGGAAGTGCC
1 TGCTCTTTGAGGACTGAAAGTGC--CACCA-A-CTTGTGTGGGCTTTGA--A--AGG-CGT-CC
** * ** * * **** *** * ** *
925600 ACCAACTTGTTTGGGCTTTAAA-AAAGAATGAC--GTCCTGCTCTTTGAGGACTGAAAG-GTGCC
1 TGC-TCTT-TGAGGAC-TGAAAGTGCCACCAACTTGT-GTGGGCTTT---GA---AAGGCGT-CC
** * * * * ** * * * * * ** *
925661 ACCAACTTGTGTGGGCTTTGTAAAGAGAAAGCATCCTCCTCTTTGAGGATTACAAAATGC--CAC
1 TGC-TCTT-TGAGGAC--TG-AAAGTGCCACCA-ACT--TGTGTG-GGCTT-TGAAAGGCGTC-C
* * * * ** * * ** * * * **
925724 TAACT-TGTGTGGGCTTTGAAAG-GCGTCCTACTCTTTAAGGAC-TGGAAAATGCCACC
1 T-GCTCTTTGAGGAC--TGAAAGTGCCACCAACT-TGTGTGGGCTTTG-AAAGGCGTCC
** * * ** * * * * * **
925780 AACTAGTGTG-GG-CTTTGAAAG-G-CATCCTGCTCTTTGAGGAC-TGGAAAATGCCACC
1 TGCT-CTTTGAGGAC--TGAAAGTGCCA-CCAACT-TGTGTGGGCTTTG-AAAGGCGTCC
** * * * ** ** * * * * *
925835 AACT-TATGTGGGCTTTGAAAG-GCGTCCTGCTCTTTGAGGAC-TGGAAAATGC--CAC
1 TGCTCTTTGAGGAC--TGAAAGTGCCACCAACT-TGTGTGGGCTTTG-AAAGGCGTC-C
* * ** * ** * * * ** * **
925889 TAACTCGTGTG-GGTTTTGAAAGACGTCCTGC-TCTT-TGAGGAC-CGGGAAGTGCCACC
1 T-GCTC-TTTGAGG-ACTGAAAG-TG-CCACCAACTTGTGTGGGCTTTGAAAG-GCGTCC
** * * ** * * * *
925945 AACT-TGT-ATGG-CTTTAAAAGGTGTCCTGC-TCTT-TGAGGAC--TGAAAGGTG-CC
1 TGCTCTTTGA-GGAC--TGAAA-GTG-CCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
** * * ** ** * * * *
925996 ACCAAT-TTGTGTGGGCTTTGAAAG-GCGTCCTGCTCTATGAGGACTAAAGTGCGAAAGGAGAGA
1 TGC--TCTT-TGAGGAC--TGAAAGTGCCACCAACT-TGTGTGGGCT----T-TG--A--A-AG-
* *
926059 GTGTCT
49 GCGTCC
* *
926065 TGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
** *
926126 TGCTCTTTGAGGGTTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCGTCC
* * *
926186 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGACGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
926241 CGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
926296 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
926351 TGCTCTTTGAGGACTAAAAGGTGCCACTAACTTGTGTGGGCTATGAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCT-T----TG-AAAGGCGTCC
* * * * *
926412 TGCTCATTGAGGACTAGGAAGTGCCACCAACTTGTGTGAGCTTTAAAAGGCATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
*
926467 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * * * *
926522 TGCTCTTTGAGGAC-AAAAGGGCGA--AA--GGAGAGAGCGTCCT-ACA--C-T-T
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGC-T-TTGAAAGGCGTCC
***** * ** ** ** * *
926568 TGAGGACTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGGCGTCA
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * * * *
926622 TGCTATTTGAGAACTGGAAGGTGCCATCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* * *
926683 TGCTCTTTGAGGACTGCAAAATGCAACCAACTTGTGTAGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
926738 TGCTCTTTGAGGACTGAAAAATGCCACCAACTCGTATGGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
** * *
926793 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGGTGTCA
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
926848 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGAGCTTTGAATGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGC-TT---T-G-AAAGGCGTCC
* * * * * * *
926909 TACTCTTTAAGGGCTGGAAGGTGCCACCAACTTGTGTGGGCATTGCAAAGAGAAATCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAG-G----CGTCC
* *
926970 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-C
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
927024 TAGCTCTTTGAGGACTGGAAAAATGCCACCAACTCGTGTGTGCTTTGAAAGGCGTCC
1 T-GCTCTTTGAGGACT-G-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * *
927081 TGCTCTTTGAGGACTAGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAGACATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
927136 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAGGACGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT----GA-AAGG-CGTCC
* * * * *
927197 TGCCCTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* * *
927258 TGCTCTTTGAGGACTGCAAAATGCCACCAACTCT-TGTAGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACT-TGTGTGGGCTTTGAAAGGCGTCC
* *
927313 TGCTCTTTGAGGACTGAAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
927368 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
927423 TGCTCTTTGAGGACTGAATGGTGCCACTAACTTGTGTGCGCTTTGAAAGGAAAAGGCGTCC
1 TGCTCTTTGAGGACTGAA-AGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
* * * * *
927484 TGCTCTTTGAGGACTAGGAAGTGCGACCAACTTGTGTGGGCTTTAAAAGGTGTCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
927539 TTCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCGTCC
* * *
927599 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGACGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
927654 CGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
927709 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
927764 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
* * * * *
927825 TACTCATTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
927880 TGCTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * *** *
927935 TGCTCTTTGAGGACT-AAAGGGCGA--AA--GGAGAGAGC-GTCCTA--C-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** * *
927981 TGAGGACTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGGCGTCG
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * * *
928035 TGCTCTTTGAGAACTGGAAGGTGCCATCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* * *
928096 TGCTCTTTGAGGACTGCAAAATGCCACCAACATGTGTAGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * *
928151 TGCTCTTTGAGGATTGGAAAATGCCACCAACTCGTATGGGCTTTGAAAGACATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* ** * *
928206 TACTCTTTGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGGTGTCA
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
928261 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGC-TT---T-G-AAAGGCGTCC
* * * * *
928322 TGCTCTTTGAGGGCTGGAAGGTGCCACCAACTTGTGTGGGCATTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* *
928383 TGCTCTTTGAGGACTGTAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCG-CC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
928437 TAGCTCTTTAAGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCC
1 T-GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * *
928493 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAGACATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
928548 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * * **** *
928603 TGCTCTTTAAGGACT-AACGGGCGA--AA--GGAGAGAGC---GTCCTGC-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** * *
928649 TGAGGAGTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGACGTCC
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * *
928703 TGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* *
928764 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
928819 TGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
928874 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAATGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
928929 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
* * * * *
928990 TGCTCTTTGAGGACTAGGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGTGTCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * **
929045 TGTTCTTTGTGGACTGAAATGTGCCACCAACTTGTGTGGGCTTTGAAAAGCACCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * * **** *
929100 TGCACTTTGAGGACT-AACGGGCGA--AA--GGAGAGAGC---GTCCTGC-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** *
929146 TGAGGACTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGGCGTCC
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * **
929200 TGCTCTTTGAGGACTGGAATGTGCCACCAAATTGTGTGGGCTTTGCAAAGAGAAAGCATTT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* **
929261 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAAGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
929316 TGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGCCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCC
* * *
929377 TGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* * *
929438 TGCTCTTTGAGGACTGCAAAATGCCACCAACTCT-TGTAGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACT-TGTGTGGGCTTTGAAAGGCGTCC
* *
929493 TGCTCTTTGAGGACTGAAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
929548 TACTCTTTGAGGACTGAAAGGTGCCACTAACTCGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
929603 TGCTCTTTGAGGACTGAATGGTGCCACTAACTTGTGTGCGCTTTGAAAGGAAAAGGCGTCC
1 TGCTCTTTGAGGACTGAA-AGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
* * * * *
929664 TGCTCTTTGAGGACTAGGAAGTGCGACCAACTTGTGTGGGCTTTAAAAGGTGTCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
929719 TACTCTTTGGGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
929774 TGCTCTTTGAGGACTGGAAAATGCCACCAACGTGTATGGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
** * *
929829 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGGTGTCA
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
929884 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGC-TT---T-G-AAAGGCGTCC
* * * * * * *
929945 TACTCTTTAAGGGCTGGAAGGTGCCACCAACTTGTGTGGGCATTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* *
930006 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-C
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
930060 TAGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTATGTGCTTTGAAAGGCGTCC
1 T-GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * *
930116 TGCTCTTTGAGGACTAGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAGACATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
930171 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * * **** *
930226 TGCTCTTTAAGGACT-AACGGGCGA--AA--GGAGAGAGC---GTCCTGC-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** * *
930272 TGAGGAGTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGACGTCC
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * *
930326 TGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* * *
930387 TGCTCTTTTAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
930442 TGCTCTTTGAGGACTGGAAAATGACACCAACTCGTGTGGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
930497 TACTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAATGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
930552 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
* * *
930613 TGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
*
930668 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGTGCTTTAAAAGAAAAGGCGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCGTCC
* * *
930728 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGACGT-C
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
930782 TCGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 T-GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
930838 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
930893 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
* * * *
930954 TGCTCATTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
931009 TGCTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * *** *
931064 TGCTCTTTGAGGACT-AAAGGGCGA--AA--GGAGAGAGC-GTCCTA--C-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * * * ** ** ** *
931110 TGAGGACTG-GGA---AGAG-CCAC-CAACTTGTGTG-GGCTTTAAAAAAAAAAGGCGTCG
1 TGCTCTTTGAGGACTGAAAGTGC-CACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * * *
931164 TGCTCTTTGAGAACTGGAAGGTGCCATCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* *
931225 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * *
931280 TGCTCTTTGAGGACTGAAAAATGCCACCAACTCGTATGGGCTTTGAAAGACATCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
** * *
931335 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGGTGTCA
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
931390 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGC-TT---T-G-AAAGGCGTCC
* * * * * *
931451 TGCTCTTTGAGGGCTGGAAGGTGCCACCAACTTGTGTAGGCATTGCAAAGAGAAAGCACC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAG-G--CG-TCC
* * *
931511 TTGCTCTTTGAAGACTGTAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCG-CC
1 -TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
931566 TAGCTCTTTAAGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCC
1 T-GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * *
931622 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAGACATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
931677 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * * **** *
931732 TGCTCTTTAAGGACT-AACGGGCGA--AA--GGAGAGAGC---GTCCTGC-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** * *
931778 TGAGGAGTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGACGTCC
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * * *
931832 TGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTTGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* *
931893 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
931948 TGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
932003 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAATGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
932058 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
* * *
932119 TGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* **
932174 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGCACCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * **** *
932229 TGCTCTTTGAGGACT-AACGGGCGA--AA--GGAGAGAGC---GTCCTGC-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** *
932275 TGAGGACTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGGCGTCC
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * **
932329 TGCTCTTTGAGGACTGGAATGTGCCACCAAATTGTGTGGGCTTTGCAAAGAGAAAGCATTT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* *
932390 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
932445 TGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGCCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCC
* * *
932506 TGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* *
932567 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
932622 TGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTATGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
** * *
932677 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGGTGTCA
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
932732 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGC-TT---T-G-AAAGGCGTCC
* *
932793 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCATCT
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTG---AAAG---GCGTCC
* *
932854 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-C
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
932908 AGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * *
932963 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAGACATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
933018 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * **** *
933073 TGCTCTTTGAGGACT-AACGGGCGA--AA--GGAGAGAGC---GTCCTGC-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** *
933119 TGAGGAGTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGGCGTCC
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * *
933173 TGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* * *
933234 TGCTCTTTGAGGACTGCAAA-TGCCACCAACTTATGTAGGCTTTGAAAGACGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
933288 CGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* **
933343 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGATGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
933398 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
* * * * *
933459 TGCTCATTGAGGACTAGGAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
933514 TGCTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * *** *
933569 TGCTCTTTGAGGACT-AAAGGGCGA--AA--GGAGAGAGC-GTCCTA--C-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** * *
933615 TGAGGACTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGGCGTCG
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * *
933669 TGCTCTTTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-C
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
933723 TAGCTCTTTAAGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCC
1 T-GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * ** * *
933779 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTCAAAAGACATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
933834 TGCTATTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * * **** *
933889 TGCTCTTTAAGGACT-AACGGGCGA--AA--GGAGAGAGC---GTCCTGC-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** * *
933935 TGAGGAGTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGACGTCC
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * *
933989 TGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* * *
934050 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
934105 TGCTCTTTGAGGACTGGAAAATGACACCAACTCGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
934160 TACTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAATGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
934215 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
* *
934276 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
* * * * *
934337 TGCTCATTGAGGACTAGGAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
934392 TGCTCTTTGAGAACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * ** *** * *** * *
934447 TGCTCTTTGAGGACT-AAAGGGCGAAAGGAGAGAGCGTCCTACTCTTTGAGGACTGGAAGTGCC
1 TGCTCTTTGAGGACTGAAAGTGC--CACCA-A-CTTGT-GTGGGCTTTGA--A-AGG-CGT-CC
** * * * ** *** ** *** ** ****
934510 ACCAACTTGTGTGGGCTTTAA--AAAAGAAAGGCGTCGTGCTCTTTGAGGACTACAAAATGCC
1 TGC-TCTT-TGAGGACTGAAAGTGCCACCAACTTGT-GTGGGCTTTGA--A--A-GGCGT-CC
** * ** * * * ** * * * **
934571 ACCAACTTGTGTAGG-CTTTGAAAG-GCGTCTAGCTCTTTAAGGAC-TAGAAAATGCCACC
1 TGC-TCTT-TG-AGGAC--TGAAAGTGCCACCAACT-TGTGTGGGCTTTG-AAAGGCGTCC
** * ** ** ** * * * * * **
934629 AACTCGTGTG-GGTTTTGAAAG-GCGTCCTGCTCTTTGAGGAC-TGGGAAGTGCCACC
1 TGCTC-TTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTTTGAAAG-GCGTCC
** * * * * * ** * * *
934684 AACT-TTTGTGGGCTTCAAA-AGACATCCTGCTT-TTTGAGGAC--TAAAAGGTG-CC
1 TGCTCTTTGAGGAC-TGAAAGTGCCA-CCAACTTGTGTG-GG-CTTTGAAAGGCGTCC
** * ** * *** *
934736 ACCAACTTGTGTAGG-CTTTGAAAG-G-CATCCTGCTCTTTAAGGACTAACGGGCGAAAGGAGAG
1 TGC-TCTT-TG-AGGAC--TGAAAGTGCCA-CCAACT-TGT---G--T---GGGC--TTTGAAAG
934798 AGCGTCC
49 -GCGTCC
* * *
934805 TGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGACGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCC
* * *
934866 TGCCCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCATCT
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTG---AAAG---GCGTCC
* *
934927 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
934982 AGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * *
935037 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAGACATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
935092 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * *
935147 TGCTCTTTGAGGACT-AACGGGCGA--AA--GGAGAGAGCGTCTT-----GC-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGC-T-TTGAAAGGCGTC-C
***** * ** ** ** *
935193 TGAGGAGTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGGCGTCC
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * *
935247 TGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* * *
935308 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGACGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
935363 CGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
935418 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
935473 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
* * * * *
935534 TGCTCTTTGAGGGCTGGAAGGTGCCACCAACTTGTGTGGGCATTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* *
935595 TGCTCTTTGAGGACTGTAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCG-CC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
935649 TAGCTCTTTAAGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCC
1 T-GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * ** * *
935705 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTCAAAAGACATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * ** *
935760 TGCTTTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAAGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * * **** *
935815 TGCTCTTTAAGGACT-AACGGGCGA--AA--GGAGAGAGC---GTCCTGC-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** * **
935861 TGAGGAGTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGATGTCC
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * *
935915 TGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* * *
935976 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
936031 TGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
936086 TACTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAATGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
936141 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
* * * * * *
936202 TGCTCATTGAAGACTAGGAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
936257 TGCTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTAAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * *** *
936312 TGCTCTTTGAGGACT-AAAGGGCGA--AA--GGAGAGAGC-GTCCTA--C-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** * *
936358 TGAGGACTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAACAAGAAAGGCGTCG
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * *
936412 TGCTCTTTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-C
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
936466 TAGCTCTTTAAGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCC
1 T-GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * ** * *
936522 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTCAAAAGACATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
936577 TGCT-TTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * * **** *
936631 TGCTCTTTAAGGACT-AACGGGCGA--AA--GGAGAGAGC---GTCCTGC-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** * *
936677 TGAGGAGTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGACGTCC
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * *
936731 TGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* * *
936792 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
936847 TGCTCTTTGAGGACTGGAAAATGACACCAACTCGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
936902 TACTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAATGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
936957 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
* * *
937018 TGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
** * **
937073 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGATCTTTGAAAAGCACCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * * **** *
937128 TGCTCTTTAAGGACT-AACGGGCGA--AA--GGAGAGAGC---GTCCTGC-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** *
937174 TGAGGACTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGGCGTCC
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * * **
937228 TGCTCTTTGAGGACTGGAATGTGCCACCAAATTGTGTAGGCTTTGCAAAGAGAAAGCATTT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* *
937289 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
937344 TGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCGTTAAAAAAGAAAGGCGCCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGC-TT-----TGAAAGGCGTCC
* * *
937405 TGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* *
937466 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
937521 TGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTATGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
** * *
937576 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGGTGTCA
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
937631 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGC-TT---T-G-AAAGGCGTCC
* *
937692 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCATCT
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTG---AAAG---GCGTCC
* *
937753 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
937808 AGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * *
937863 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAGACATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
937918 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTTTTGTGGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * **** *
937973 TGCTCTTTGAGGACT-AACGGGCGA--AA--GGAGAGAGC---GTCCTGC-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** **
938019 TGAGGAGTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAAAAAGGCGTCC
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * * *
938073 TGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGAGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* * * *
938134 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTATGTAGGCTTTGAAAGACGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
938189 CGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
938244 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
938299 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCC
* * * * *
938360 TGCTCATTGAGGACTAGGAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
938415 TGCTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * *** *
938470 TGCTCTTTGAGGACT-AAAGGGCGA--AA--GGAGAGAGC-GTCCTA--C-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC-C
***** * ** ** ** * *
938516 TGAGGACTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGGCGTCG
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * *
938570 TGCTCTTTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-C
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
938624 TAGCTCTTTAAGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCC
1 T-GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * ** * *
938680 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTCAAAAGACATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
938735 TGCTTTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * * * * * *
938790 TGCTCTTTAAGGACT-AATGGGCGA--AA--GGAGAGAGCGTCTT-----GC-TCTT
1 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGC-T-TTGAAAGGCGTC-C
***** * ** ** ** * *
938836 TGAGGAGTG-GGAAGTGCCA---CCA--ACTTGTGTG-GGCTTTAAAAAAGAAAGACGTCC
1 TGCTCTTTGAGG-ACTGAAAGTGCCACCAACT-TGTGTGGGCTT-----TGAAAGGCGTCC
* * * *
938890 TGCGCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* * *
938951 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCATCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * *
939006 TGCTTTTTGAGGACTGGAAAATGCCAGCAACTCGTATGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* ** * *
939061 TGCTCTTTGAGGACTGAAAGGTGCCAGCAACTCATGTGGGCTTTGAAAGGTGTCA
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
939116 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGC-TT---T-G-AAAGGCGTCC
* *
939177 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCC
* * * *
939238 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTATGTAGGCTTTGAAAGACGTCC
1 TGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
939293 CGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* **
939348 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGATGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
939403 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCGTCC
* * * * *
939463 TGCTCATTGAGGACTAGGAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCC
1 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* *
939518 TGCTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
939573 TGCTCTTTGAGGACT-AAAG
1 TGCTCTTTGAGGACTGAAAG
939592 GGCGAAAGGA
Statistics
Matches: 13183, Mismatches: 2631, Indels: 2614
0.72 0.14 0.14
Matches are distributed among these distances:
42 1 0.00
43 3 0.00
44 69 0.01
45 90 0.01
46 192 0.01
47 55 0.00
48 12 0.00
49 106 0.01
50 12 0.00
51 56 0.00
52 19 0.00
53 119 0.01
54 629 0.05
55 7305 0.55
56 179 0.01
57 104 0.01
58 233 0.02
59 175 0.01
60 549 0.04
61 3033 0.23
62 108 0.01
63 21 0.00
64 23 0.00
65 16 0.00
66 27 0.00
67 25 0.00
68 14 0.00
69 8 0.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (54 bp):
TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
Found at i:922719 original size:26 final size:26
Alignment explanation
Indices: 922630--922719 Score: 76
Period size: 26 Copynumber: 3.3 Consensus size: 26
922620 GTGTGGGCTT
* *
922630 TGAAAGGCGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTACTCTTTGAGGAC
* * *
922656 TGAAAGGTGCCACCAACTCGTGTG-GG-C
1 TGAAAGGTG--TCCTACTC-TTTGAGGAC
922683 TTTGAAAGGTGTCCTACTCTTTGAGGAC
1 --TGAAAGGTGTCCTACTCTTTGAGGAC
922711 TGAAAGGTG
1 TGAAAGGTG
922720 CCACTAACTT
Statistics
Matches: 49, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
26 20 0.41
27 9 0.18
28 8 0.16
29 12 0.24
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (26 bp):
TGAAAGGTGTCCTACTCTTTGAGGAC
Found at i:922862 original size:116 final size:113
Alignment explanation
Indices: 922292--924391 Score: 1434
Period size: 116 Copynumber: 18.7 Consensus size: 113
922282 GGAGAGAGTG
*
922292 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCCT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCT
* *
922357 GCTCTTTGAGGACTGGAATGTGCCACCAAATTGTGTGGGCTTTGCAAAGAGAAA-GCA
59 GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAGA-AAAGGCA
** * *
922414 TTTTGCTCTTTGAGGACTGTAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* * *
922479 TGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCG
65 TGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCA
* * * *
922529 TCCTGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGACGTCCCGCTCTT
1 TCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* * *
922594 TGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTT----G-AAAGGCG
65 TGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCA
* * *
922639 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTACTCTT
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* *
922704 TGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTATGAAAGGAAAAGGCA
65 TGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAA-GAAAAGGCA
* * *
922755 TCCTGCTCATTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
922820 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG----GTG--
65 TGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAG-GCA
* * * * * * * * * * ****
922865 TCCTGCTCTTTGAGGAC-AAAAGGGCGA--AA--GGAGAGAGCGTCCT-ACA--C-T-TTGAGGA
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGC-T-TTGAAAGGCGTCCTGCTCT
* * * * *
922920 CT--GG---G-AAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGCCG
64 TTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGA-AAAGGCA
* * * * * * *
922965 TCATGCTATTTGAGAACTAGAAGGTGCCATCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCT
* * *
923030 GCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTT----G-AAAGGCG
59 GCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCA
* * * * *
923081 TCCAGCTCTTTGAGGACTAGAAAATGCCACCAACTCGTATGGGCTTTGAAAGGCATCCTGCTCTT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
**
923146 TGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAG----GTG--
65 TGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAG-GCA
* * *
923191 TCATGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGCATCCT
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGC-TT---T-G-AAAGGCGTCCT
* * * * *
923256 ACTCTTTAAGGGCTGGAAGGTGCCACCAACTTGTGTGGGCATTGCAAAGAGAAA-GCA
59 GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAGA-AAAGGCA
* * *
923313 TCTTGCTCTTTGAGGACTGTAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGCTCT
1 TCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT-GCTCT
* * * *
923377 TTGAGGACTGGAAAATGCCACCAACTCGTGTGTGCTTT----G-AAAGGCG
64 TTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCA
* * * * *
923423 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAGACATCCTGCTCTT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* * *
923488 CGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTT----G-AAAGGCA
65 TGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCA
* * * * * ** * * *
923533 TCCTGCTCTTTGAGGACT-AACGGGCGA--AA-----G-GAG---AGAGCGTCCTGCT-CT-TTG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT-
* * * * *
923584 AGGAGTG---GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCG
65 -TGAG-GACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGA-AAAGGCA
* * * *
923633 TCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCT
* * *
923698 GCTCTTTGAGGACTGCAAAATGCCACCAACTCT-TGTAGGCTTT----G-AAAGGCG
59 GCTCTTTGAGGACTG-AAAGTGCCACCAACT-TGTGTGGGCTTTGAAAGAAAAGGCA
* * *
923749 TTCTGCTCTTTGAGGACTGAAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
*
923814 TGAGGACTGAAAGGTGCCACCAACTCAG-GTGGGCTTTGAAAG----GTG--
65 TGAGGACTGAAA-GTGCCACCAACT-TGTGTGGGCTTTGAAAGAAAAG-GCA
* * * *
923859 TCCTGCTCTTTAAAGACTGAATGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTGAA-AGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCCT
* * **
923924 GCTCTTTGAGGACTAGGAAGTGCGACCAACTTGTGTGGGCTTT-----AAAAGGTG
59 GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCA
* *
923975 TCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCGTCCTG
* * *
924040 CTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG---A--CG
60 CTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCA
* * * *
924090 TCCCGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTAGGCTTTGAAAGGCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
*
924155 TGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAG----GTG--
65 TGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAG-GCA
* * *
924200 TCCTACTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCCT
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCCT
* *
924265 GCTCATTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTT-----AAAAGGCA
59 GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCA
* *
924316 TCCTGCTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
924381 TGAGGACTGAA
65 TGAGGACTGAA
924392 GGGCGAAAGG
Statistics
Matches: 1591, Mismatches: 230, Indels: 327
0.74 0.11 0.15
Matches are distributed among these distances:
94 50 0.03
95 6 0.00
96 3 0.00
97 9 0.01
98 1 0.00
99 3 0.00
100 39 0.02
101 4 0.00
102 13 0.01
103 1 0.00
104 10 0.01
105 4 0.00
106 10 0.01
107 1 0.00
108 12 0.01
109 35 0.02
110 474 0.30
111 12 0.01
112 3 0.00
113 6 0.00
114 14 0.01
115 207 0.13
116 510 0.32
117 20 0.01
118 2 0.00
119 6 0.00
120 4 0.00
121 6 0.00
122 122 0.08
123 4 0.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (113 bp):
TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTT
GAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCA
Found at i:923007 original size:61 final size:61
Alignment explanation
Indices: 922925--923363 Score: 226
Period size: 61 Copynumber: 7.5 Consensus size: 61
922915 GAGGACTGGG
*
922925 AAGTGCCACCAACTTGTGTGGGCTTT-AAAAAAGAAAGCCGTCATGCTATTTGAGAACTAG-A
1 AAGTGCCACCAACTTGTGTGGGCTTTGAAAAAAGAAAG-CATCATGCTATTTGAGAACT-GCA
* * * * * * *
922986 AGGTGCCATCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGCA
1 AAGTGCCACCAACTTGTGTGGGCTTTGAAAAAAGAAAGCATCATGCTATTTGAGAACTGCA
* * * * *
923047 AAATGCCACCAACTTGTGTAGGCTTTG---AAAG---GCGTCCA-GCTCTTTGAGGACTAG-A
1 AAGTGCCACCAACTTGTGTGGGCTTTGAAAAAAGAAAGCAT-CATGCTATTTGAGAACT-GCA
* * * * * *
923102 AAATGCCACCAACTCGTATGGGCTTTG---AAAG---GCATCCTGCTCTTTGAGGACTG-A
1 AAGTGCCACCAACTTGTGTGGGCTTTGAAAAAAGAAAGCATCATGCTATTTGAGAACTGCA
** ** * *
923156 AAGGTGCCACCAACTCATGTGGGCTTTG---AAAG---GTGTCATGCTCTTTGAGGACTG-A
1 AA-GTGCCACCAACTTGTGTGGGCTTTGAAAAAAGAAAGCATCATGCTATTTGAGAACTGCA
* ** * * * * * ** *
923211 AAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAA-AAGGCATCCTACTCTTTAAGGGCTGGA
1 AA-GTGCCACCAACTTGTGTGGGCTTTGAA-AAAAGAAAGCATCATGCTATTTGAGAACTGCA
* * * * * * * *
923273 AGGTGCCACCAACTTGTGTGGGCATTGCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGTA
1 AAGTGCCACCAACTTGTGTGGGCTTTGAAAAAAGAAAGCATCATGCTATTTGAGAACTGCA
* *
923334 AAATGCCACCAACTTGTGTAGGCTTTGAAA
1 AAGTGCCACCAACTTGTGTGGGCTTTGAAA
923364 GGCGTCTAGC
Statistics
Matches: 309, Mismatches: 54, Indels: 30
0.79 0.14 0.08
Matches are distributed among these distances:
54 5 0.02
55 134 0.43
56 2 0.01
58 3 0.01
59 2 0.01
60 2 0.01
61 150 0.49
62 11 0.04
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (61 bp):
AAGTGCCACCAACTTGTGTGGGCTTTGAAAAAAGAAAGCATCATGCTATTTGAGAACTGCA
Found at i:923513 original size:668 final size:649
Alignment explanation
Indices: 921912--941529 Score: 12323
Period size: 668 Copynumber: 29.5 Consensus size: 649
921902 AAGGAGAGCA
* *
921912 TCCTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTTTGGGCTTTAAAAAAGAAAGACGTCC
1 TCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCC
* * *
921976 TGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGTAAAGAGAAAGCATCCTCCT
59 TGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCTGCT
* ** * * * *
922041 CTTTGAGGATTACAAAATGCCACTAACTTGTGTGGGCTTTGAAAGGCGTCCTACTCTTTAAGGAC
117 CTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
* * * * ***
922106 TGGAAAATGCCACCAACTAGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACCGGGAA-GTG
182 TGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGA-CTAAAAGGTG
* * *
922170 CCACCAACTTGTAT-GGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAATTT
245 CCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGG-GCCA--AA---
* * * *
922234 GTGTGGGCTTTGAAAGGCGTCCTGCTCTATGAGGACT--AAAGTGCGA--AA--------GG---
304 ---T-GG---AGAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTT
* * * *
922284 ----AGAGA-GTGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAA
362 TAAAAGAAAGGCGTCCTGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTT--GA
* * *
922343 AAGAAAGGCGTCCTGCTCTTTGAGGACTGGAATGTGCCACCAAATTGTGTGGGCTTTGCAAAGAG
424 AAG--AGGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG
* ** * * *
922408 AAAGCATTTTGCTCTTTGAGGACTGTAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCT
483 ---GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT
* *
922473 GCTCTTTGAGGAGTGGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCTGCTC
545 GCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCGTCCTGCTC
* * *
922537 TTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGACG
604 TTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
922584 TCCCGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* * *
922649 TGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTACTCTTTGAGGACT-G
66 TGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGG
* * * *
922713 AAAGGTGCCACTAACTTGTGTGGGCTATGAAAGGAAAAGGCATCCTGCTCATTGAGGACTAGGAA
130 AAA-GTGCCACCAACTTGTGTGGGCT-T----TG-AAAGGCGTCCTGCTCTTTGAGGACT-GGAA
* *
922778 GTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAA
187 GTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAA
* * *
922843 CTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGAC-AAAAGGGCGAAA-GGAGAGA-GCGT
252 CTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGGCCAAATGGAGAAAGGCGT
* * * *
922905 CCTACACTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGCCGTCATG
317 CCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT--AAAAGAAAGGCGTCCTG
* * * *
922970 CTATTTGAGAACTAGAAGGTGCCATCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCT
380 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGAG---GCATCCTGCTCT
* * * *
923035 TTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCAGCTCTTTGAGGACTA
441 TTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTG
* * * *
923100 GAAAATGCCACCAACTCGTATGGGCTTTGAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCA
505 GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCA
** * * *
923165 CCAACTCATGTGGGCTTTGAAAGGTGTCATGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTG
570 CCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTG
*
923230 TGGGCTTTGAATGGAAAAGGCA
634 TGGGC-TT---T-G-AAAGGCG
* * * * * * *
923252 TCCTACTCTTTAAGGGCTGGAAGGTGCCACCAACTTGTGTGGGCATTGCAAAGAGAAAGCATCTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCT
* *
923317 GCTCTTTGAGGACTGTAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGCTCTTTGA
60 GCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT-GCTCTTTGA
* * *
923381 GGACTGGAAAATGCCACCAACTCGTGTGTGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAGGAA
123 GGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT-GGAA
* * *
923446 GTGCCACCAACTTTTGTGGGCTTTAAAAGACATCCTGCTCTTCGAGGACTAAAAGGTGCCACCAA
187 GTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAA
* * * * *
923511 CTTGTGTAGGCTTTGAAAGGCATCCTGCTCTTTGAGGACT-AACGGGCGAAA-GGAGAGA-GCGT
252 CTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGGCCAAATGGAGAAAGGCGT
*
923573 CCTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCCTG
317 CCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT--AAAAGAAAGGCGTCCTG
* * *
923638 CCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCT
380 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGAG---GCATCCTGCTCT
* * *
923703 TTGAGGACTGCAAAATGCCACCAACTCT-TGTAGGCTTTGAAAGGCGTTCTGCTCTTTGAGGACT
441 TTGAGGACTG-AAAGTGCCACCAACT-TGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
* * *
923767 GAAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCC
504 GGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCC
* * * * * *
923832 ACCAACTCAG-GTGGGCTTTGAAAGGTGTCCTGCTCTTTAAAGACTGAATGGTGCCACTAACTTG
569 ACCAACT-TGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAA-AGTGCCACCAACTTG
923896 TGTGGGCTTTGAAAGGAAAAGGCG
632 TGTGGGCTTT-----G-AAAGGCG
* * * *
923920 TCCTGCTCTTTGAGGACTAGG-AAGTGCGACCAACTTGTGTGGGCTTTAAAAGGTGTCCTACTCT
1 TCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
*
923984 TTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAG
65 TTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCGTCCTGCTCTTTGAG
* * * * * *
924049 GACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGACGTCCCGCTCTTTGAGGACTGGAAAA
124 GACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGG-AAG
* * * * *
924114 TGCCACCAACTCGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAC
188 TGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAAC
* * * *
924179 TCGTGTGGGCTTTGAAAGGTGTCCTACTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGC
253 TTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGG-GCCA--AA------T--G-
* * *
924244 TTTGAAAGGAAAAGGCATCCTGCTCATTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTT-
306 ---G--A-G-AAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTA
* *
924308 --A-AAAGGCATCCTGCTCTTTGAGGACT-GAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAG-
364 AAAGAAAGGCGTCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGA
* * * * *
924368 GTG--TCCTGCTCTTTGAGGACTG-AAGGGCGA--AA--------GG---AGAGA-GCGTCCTAC
428 G-GCATCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGC
* *
924416 TCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCGTGCTCTT
492 TCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCTGCTCTT
* * * * *
924481 TGAGAACTGGAAGGTGCCATCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCTTTGAG
551 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCTGCTCTTTGAG
* *
924546 GACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCG
610 GACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * * *
924587 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTATGGGCTTTGAAAGACATCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
** * *
924652 TGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGGTGTCATGCTCTTTGAGGACT-G
66 TGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGG
* * *
924716 AAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGCATCCTGCTCTTTGAGGGCTGGAAG
130 AAA-GTGCCACCAACTTGTGTGGGC-TT---T-G-AAAGGCGTCCTGCTCTTTGAGGACTGGAA-
* *
924781 GTGCCACCAACTTGTGTGGGCATTGCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGCAAAA--T
187 GTGCCACCAACTTGTGTGGGC-TT-TAAA-AG---GCATCCTGCTCTTTGAGGACT--AAAAGGT
* * **
924844 GCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGCTCTTTAAGGACTAGAAAATGCCACCAAC
244 GCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT-GCTCTTTGAGGACTA-AAAGGGCCA--AA-
* *
924908 TCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGC
304 -----T-GG---AGAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGC
* * *
924973 TTTAAAAG--A--CATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTG-A
360 TTTAAAAGAAAGGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAA
* * * * * *
925033 A-AGGCATCCTGCTCTTTAAGGACT-AACGGGCGA--AA--------GG---AGAGA-GCGTCCT
425 AGAGGCATCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT
* * * *
925082 GCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGACGTCCTGCCC
490 GCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCTGCTC
* * *
925147 TTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCTTTG
549 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCTGCTCTTTG
* *
925212 AGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCG
608 AGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
925255 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* * * * *
925320 TGAGGACTGAAAGGTACCACCAACTCGTGTGGGCTTTGAAATGTGTCCTGCTCTTTGAGGCCT-G
66 TGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGG
* * *
925384 AAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGTGTCCTGCTTTTTGAGGACTAGGAA
130 AAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCCTGCTCTTTGAGGACT-GGAA
* ** *
925449 GTGCCACCAACTTGTGTGGGCTTTAAATGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCA-CAA
187 GTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAA
* * * * * * *
925513 CTTGTGTGGGATTTTAAAAGTGTCCTACTCTTTGAGGACT-AAAGGGCGAAA-GGAG--A-GCAT
252 CTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGGCCAAATGGAGAAAGGCGT
* * * *
925573 CCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTTTGGGCTTTAAAAAAGAATGACGTCCTG
317 CCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT--AAAAGAAAGGCGTCCTG
*
925638 CTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGTAAAGAGAAAGCATCCTCCTC
380 CTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGAG---GCATCCTGCTC
* * * * * *
925702 TTTGAGGATTACAAAATGCCACTAACTTGTGTGGGCTTTGAAAGGCGTCCTACTCTTTAAGGACT
440 TTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
* * * *
925767 GGAAAATGCCACCAACTAGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGAGGACTGGAAA-ATGC
504 GGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT-GAAAGGTGC
* * * *
925831 CACCAACTTATGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACTAACTCG
568 CACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTG
* *
925896 TGTGGGTTTTGAAAGACG
632 TGTGGGCTTTGAAAGGCG
* * * * *
925914 TCCTGCTCTTTGAGGACCGGGAAGTGCCACCAACTTGTAT-GGCTTTAAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* *
925978 TGAGGACTGAAAGGTGCCACCAATTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTATGAGGACT--
66 TGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGG
* * * * *
926041 AAAGTGCGA--AA--------GG---AGAGA-GTGTCTTGCTCTTTGAGGACTAGGAAGTGCCAC
130 AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT-GGAAGTGCCAC
* * **
926092 CAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCTTGCTCTTTGAGGGTTGGAAAA--TGCCACCA
194 CAACTTGTGTGGGCTTT------AAAAGGCATCCTGCTCTTTGAGGACT--AAAAGGTGCCACCA
*
926155 ACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGCAAAA-TGCCACCAACTT
251 ACTTGTGTGGGCTTT----G-AAAGGCGTCCTGCTCTTTGAGGACT--AAAAGGGCCA--AA--T
* * * * *
926219 GTGTAGGCTTTGAAAGACGTCCCGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTT
305 G-G-A------GAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTT
*
926284 T----GAAAGGCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTCGTGTGGGCTTTGAAA
362 TAAAAGAAAGGCGTCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAA
* * *
926344 G-GTG--TCCTGCTCTTTGAGGACTAAAAGGTGCCACTAACTTGTGTGGGCTATGAAAGGAAAAG
426 GAG-GCATCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCT-T----TG-AAAG
* * * * *
926406 GCATCCTGCTCATTGAGGACTAGG-AAGTGCCACCAACTTGTGTGAGCTTTAAAAGGCATCCTGC
483 GCGTCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGC
*
926470 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGA
547 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGA
* * * * *
926535 C-AAAAGGGCGA--AA--------GG---AGAGA-GCG
612 CTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * *
926558 TCCTACACTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCAT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCT
* * * * * *
926623 GCTATTTGAGAACTGGAAGGTGCCATCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTC
60 GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCTGCTC
* * * *
926688 TTTGAGGACTGCAAAATGCAACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
118 TTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
* * * * * *
926753 GAAAAATGCCACCAACTCGTATGGGCTTTGAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCC
183 G-GAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCC
** * * *
926818 ACCAACTCATGTGGGCTTTGAAAGGTGTCATGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGT
247 ACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGG-GCCA--AA-----
* * * *
926883 GTGAGCTTTGAATGGAAAAGGCATCCTACTCTTTAAGGGCT-GGAAGGTGCCACCAACTTGTGTG
304 -T--G----G-A--G-AAAGGCGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTG
* * * * ** *
926947 GGCATTGCAAAGAGAAA-TCATCTTGCTCTTTGAGGACT-GCAAAATGCCACCAACTTGTGTAGG
357 GGC-TT-TAAA-AGAAAGGCGTCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGG
* * * *
927010 CTTTG-AA-AGGCGT-CTAGCTCTTTGAGGACTGGAAAAATGCCACCAACTCGTGTGTGCTTTGA
418 CTTTGAAAGAGGCATCCT-GCTCTTTGAGGACT-G-AAAGTGCCACCAACTTGTGTGGGCTTTGA
* * * *
927072 AAGGCGTCCTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTTTGTGGGCTTTAAAAGACATCC
480 AAGGCGTCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * *
927136 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAGGACGTCCTGCC
544 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT----GA-AAGG-CGTCCTGCT
* * *
927201 CTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCA
603 CTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCG
* * * * *
927255 TCTTGCTCTTTGAGGACTGCAAAATGCCACCAACTCT-TGTAGGCTTTGAAAGGCATCCTGCTCT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACT-TGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* *
927319 TTGAGGACTGAAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT-
65 TTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTG
* *
927383 GAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT-GAATGGTGC
129 GAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAA--GTGC
* * * * *
927447 CACTAACTTGTGTGCGCTTTGAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGGAA-GTGCGAC
191 CACCAACTTGTGTGGGCTTT------AAAAGGCATCCTGCTCTTTGAGGACTA-AAAGGTGCCAC
* * * *
927511 CAACTTGTGTGGGCTTTAAAAGGTGTCTTTCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGT
249 CAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGG-GCCA--AA------T
** * *
927576 GGGCTTTGAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCT
305 --G----G--AG-AAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCT
* * * ** *
927641 TT----GAAAGACGTCCCGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTG-AA
361 TTAAAAGAAAGGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
* * *
927701 -AGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCT
426 GAGGCATCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT
* * *
927765 GCTCTTTGAGGACT-GAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCCTACT
490 GCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCCTGCT
* * * *
927829 CATTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGA
548 CTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGA
* *
927893 CTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTG
612 CTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * * *
927932 TCCTGCTCTTTGAGGACT--AAAGGGCGA--AA--------GG---AGAGA-GCGTCCTACTCTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* *
927981 TGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCGTGCTCTTTGAG
66 TGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCTGCTCTTTGAG
* * * * *
928046 AACTGGAAGGTGCCATCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCTTTGAGGACT
124 GACTGGAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCTGCTCTTTGAGGACT
* * * * * * *
928111 GCAAAATGCCACCAACATGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAGGATTGGAAAA--TG
183 G-GAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACT--AAAAGGTG
* * * * * *
928174 CCACCAACTCGTATGGGCTTTGAAAGACATCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTC
245 CCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGG-G---CCAA---
* * * * *
928239 ATGTGGGCTTTGAAAGGTGTCATGCTCTTTGAGGACT-GAAAGGTGCCACTAACTTGTGTGGGCT
303 A--T-GG---AGAAAGGCGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCT
** * * * *
928303 TTGAATGGAAAAGGCATCCTGCTCTTTGAGGGCTGGAAGGTGCCACCAACTTGTGTGGGCATTGC
361 TT-AAAAG-AAAGGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTG-
* * *
928368 AAAGAGAAAGCATCTTGCTCTTTGAGGACTGTAAAATGCCACCAACTTGTGTAGGCTTTGAAAGG
423 AAAGAG---GCATCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG
* * * * *
928433 CG-CCTAGCTCTTTAAGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGCT
484 CGTCCT-GCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* * * * *
928497 CTTTGAGGACTGGGAA-GTGCCACCAACTTTTGTGGGCTTTAAAAGACATCCTGCTCTTTGAGGA
548 CTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGA
* * *
928561 CTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCA
612 CTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * * * *
928600 TCCTGCTCTTTAAGGACT--AACGGGCGA--AA--------GG---AGAGA-GCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* * * *
928649 TGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGACGTCCTGCCCTTTGAG
66 TGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCTGCTCTTTGAG
* * *
928714 GACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCTTTGAGGACT
124 GACTGGAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCTGCTCTTTGAGGACT
* * * * *
928779 GCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAAAA--TG
183 G-GAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACT--AAAAGGTG
* *
928842 CCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTC
245 CCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGG-GCCA--AA---
* * * * *
928907 GTGTGGGCTTTGAAATGTGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACTAACTTGTGTGGGCT
304 ---T-GG---AGAAAGGCGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCT
* * *
928971 TTGAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTATGTGGGCTTT-
361 TT-AAAAG-AAAGGCGTCCTGCTCTTTGAGGACTA-GAAGGTGCCACCAACTTGTGTGGGCTTTG
** * * * * **
929034 AAA-AGGTGTCTTGTTCTTTGTGGACTGAAATGTGCCACCAACTTGTGTGGGCTTTGAAAAGCAC
423 AAAGAGGCATCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGT
* * * * * *
929098 CCTGCACTTTGAGGACT--AACGGGCGA--AA--------GG---AGAGA-GCGTCCTGCTCTTT
487 CCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTT
*
929147 GAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCCTGCTCTTTGAG
552 GAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCTGCTCTTTGAG
* * *
929211 GACTGGAATGTGCCACCAAATTGTGTGGGCTTTGCAAAGAGAAAGCA
610 GACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCG
** * * **
929258 TTTTGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAAGCTTTGAAAGGCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* * *
929323 TGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGCCCTGCTCTTTGAG
66 TGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCTGCTCTTTGAG
* * *
929388 GACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCTTTGAGGACT
124 GACTGGAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCTGCTCTTTGAGGACT
* * * * *
929453 GCAAAATGCCACCAACTCT-TGTAGGCTTTGAAAGGCATCCTGCTCTTTGAGGACTGAAAA-ATG
183 G-GAAGTGCCACCAACT-TGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACT-AAAAGGTG
* * *
929516 CCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTGAAAGGTGCCACTAACTC
245 CCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGG-GCCA--AA---
* * * *
929581 GTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT--GAATGGTGCCACTAACTTGTGTGCGC
304 ---T-GG---AGAAAGGCGTCCTGCTCTTTGAGGACTGGGAA--GTGCCACCAACTTGTGTGGGC
* *
929644 TTTGAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGGAA-GTGCGACCAACTTGTGTGGGCTTT
360 TTT-AAAAG-AAAGGCGTCCTGCTCTTTGAGGACTA-GAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * *
929708 -AAA-AGGTGTCTTACTCTTTGGGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
422 GAAAGAGGCATCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * *
929771 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACGTGTATGGGCTTTGAAAGGCATCCTGCTCTT
486 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
** * *
929836 TGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGGTGTCATGCTCTTTGAGGACTGA
551 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGA
* *
929901 AAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGCA
616 AA-GTGCCACCAACTTGTGTGGGC-TT---T-G-AAAGGCG
* * * * * * *
929942 TCCTACTCTTTAAGGGCTGGAAGGTGCCACCAACTTGTGTGGGCATTGCAAAGAGAAAGCATCTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCT
* *
930007 GCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGCTCTTTGA
60 GCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT-GCTCTTTGA
* * * *
930071 GGACTGGAAAATGCCACCAACTCGTATGTGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAGGAA
123 GGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT-GGAA
* *
930136 GTGCCACCAACTTTTGTGGGCTTTAAAAGACATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAA
187 GTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAA
* * * * * *
930201 CTTGTGTAGGCTTTGAAAGGCATCCTGCTCTTTAAGGACT-AACGGGCGAAA-GGAGAGA-GCGT
252 CTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGGCCAAATGGAGAAAGGCGT
* *
930263 CCTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGACGTCCTG
317 CCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT--AAAAGAAAGGCGTCCTG
* * *
930328 CCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCT
380 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGAG---GCATCCTGCTCT
* * *
930393 TTTAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTG
441 TTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTG
* * * * *
930458 GAAAATGACACCAACTCGTGTGGGCTTTGAAAGGCATCCTACTCTTTGAGGACTGAAAGGTGCCA
505 GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCA
* * * *
930523 CCAACTCGTGTGGGCTTTGAAATGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTG
570 CCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTG
*
930588 TGGGCTTTGAAAGGAAAAGGTG
634 TGGGCTTT-----G-AAAGGCG
* *
930610 TCCTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
1 TCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
*
930674 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGTGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAG
65 TTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCGTCCTGCTCTTTGAG
* * * *
930739 GACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGACGT-CTCGCTCTTTGAGGACTGGAAA
124 GACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT-GCTCTTTGAGGACTGG-AA
* * * * *
930803 ATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAA
187 GTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAA
* * *
930868 CTCGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGG
252 CTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGG-GCCA--AA------T--G
* * *
930933 CTTTGAAAGGAAAAGGCATCCTGCTCATTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTT
306 ----G--A-G-AAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
* *
930998 ---A-AAAGGCATCCTGCTCTTTGAGGACT-GAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAG
363 AAAAGAAAGGCGTCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
* * * * *
931058 -GTG--TCCTGCTCTTTGAGGACT-AAAGGGCGA--AA--------GG---AGAGA-GCGTCCTA
427 AG-GCATCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTG
* * * *
931105 CTCTTTGAGGACTGGGAAGAGCCACCAACTTGTGTGGGCTTTAAAAAAAAAAGGCGTCGTGCTCT
491 CTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCTGCTCT
* * * * *
931170 TTGAGAACTGGAAGGTGCCATCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCTTTGA
550 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCTGCTCTTTGA
* *
931235 GGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCG
609 GGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * * * *
931277 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTCGTATGGGCTTTGAAAGACATCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
** * *
931342 TGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGGTGTCATGCTCTTTGAGGACT-G
66 TGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGG
* * *
931406 AAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGCATCCTGCTCTTTGAGGGCTGGAAG
130 AAA-GTGCCACCAACTTGTGTGGGC-TT---T-G-AAAGGCGTCCTGCTCTTTGAGGACTGGAA-
* * *
931471 GTGCCACCAACTTGTGTAGGCATTGCAAAGAGAAAGCA-CCTTGCTCTTTGAAGACTGTAAAA--
187 GTGCCACCAACTTGTGTGGGC-TT-TAAA-AG---GCATCC-TGCTCTTTGAGGAC--TAAAAGG
* * **
931533 TGCCACCAACTTGTGTAGGCTTTGAAAGGCG-CCTAGCTCTTTAAGGACTAGAAAATGCCACCAA
243 TGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT-GCTCTTTGAGGACTA-AAAGGGCCA--AA
* *
931597 CTCGTGTGGGTTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGG
304 ------T-GG---AGAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGG
* * *
931662 CTTTAAAAG--A--CATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTG-
359 CTTTAAAAGAAAGGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGA
* * * * * *
931722 AA-AGGCATCCTGCTCTTTAAGGACT-AACGGGCGA--AA--------GG---AGAGA-GCGTCC
424 AAGAGGCATCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * *
931771 TGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGACGTCCTGCC
489 TGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCTGCT
* * * *
931836 CTTTGAGGACTGGAAGGTGCCACCAACTTGTGTTGGCTTTGCAAAGAGAAAGCATCTTGCTCTTT
548 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCTGCTCTTT
* *
931901 GAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCG
607 GAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
931945 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* * *
932010 TGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAATGTGTCCTGCTCTTTGAGGACT-G
66 TGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGG
* *
932074 AAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTAGGAA
130 AAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCCTGCTCTTTGAGGACT-GGAA
** *
932139 GTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAA
187 GTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAA
* ** * * *
932204 CTTGTGTGGGCTTTGAAAAGCACCCTGCTCTTTGAGGACT-AACGGGCGAAA-GGAGAGA-GCGT
252 CTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGGCCAAATGGAGAAAGGCGT
932266 CCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCCTG
317 CCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT--AAAAGAAAGGCGTCCTG
* * * **
932331 CTCTTTGAGGACTGGAATGTGCCACCAAATTGTGTGGGCTTTGCAAAGAGAAAGCATTTTGCTCT
380 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGAG---GCATCCTGCTCT
* * *
932396 TTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAGTG
441 TTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTG
* * *
932461 GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGCCCTGCTCTTTGAGGACTGGAAG
505 GAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCTGCTCTTTGAGGACTGAAAG
* * *
932526 GTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGCAAAATGC
564 GTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCTGCTCTTTGAGGACTG-AAAGTGC
*
932591 CACCAACTTGTGTAGGCTTTGAAAGGCG
622 CACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
932619 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTATGGGCTTTGAAAGGCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
** * *
932684 TGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGGTGTCATGCTCTTTGAGGACT-G
66 TGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGG
* * *
932748 AAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGTGTCCTGCTCTTTGAGGACTGAAAG
130 AAA-GTGCCACCAACTTGTGTGGGC-TT---T-G-AAAGGCGTCCTGCTCTTTGAGGACTGGAA-
*
932813 GTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCATCTTGCTCTTTGAGGACTGCAAAA--T
187 GTGCCACCAACTTGTGTGGGCTTT---AAAAG---GCATCCTGCTCTTTGAGGACT--AAAAGGT
* * *
932876 GCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CAGCTCTTTGAGGACTGGAAAA-TGCCACCAAC
244 GCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT--AAAAGGGCCA--AA-
* *
932939 TCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGC
304 -----T-GG---AGAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGC
* *
933004 TTTAAAAG--A--CATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG-A
360 TTTAAAAGAAAGGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAA
* * * * *
933064 A-AGGCATCCTGCTCTTTGAGGACT-AACGGGCGA--AA--------GG---AGAGA-GCGTCCT
425 AGAGGCATCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT
* *
933113 GCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCCTGCTC
490 GCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCTGCTC
* * *
933178 TTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCTTTG
549 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCTGCTCTTTG
* * *
933243 AGGACTGCAAA-TGCCACCAACTTATGTAGGCTTTGAAAGACG
608 AGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
933285 TCCCGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* **
933350 TGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGATGTCCTGCTCTTTGAGGACT-G
66 TGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGG
* * * *
933414 AAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCCTGCTCATTGAGGACTAGGAG
130 AAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGTCCTGCTCTTTGAGGACT-GGAA
* *
933479 GTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCGCCAA
187 GTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAA
* * *
933544 CTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT-AAAGGGCGAAA-GGAGAGA-GCGT
252 CTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGGCCAAATGGAGAAAGGCGT
* *
933606 CCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCGTG
317 CCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT--AAAAGAAAGGCGTCCTG
* ** * * *
933671 CTCTTTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTG-AA-AGGCGT-CTAGCTCTTTA
380 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAGGCATCCT-GCTCTTTG
* * * *
933733 AGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGGA
444 AGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAA
* ** * * * *
933798 AGTGCCACCAACTTTTGTGGGCTTCAAAAGACATCCTGCTATTTGAGGACTAAAAGGTGCCACCA
508 AGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCA
* * * * * *
933863 ACTTGTGTAGGCTTTGAAAGGCATCCTGCTCTTTAAGGACT-AACGGGCGA--AA--------GG
573 ACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGG
* *
933917 ---AGAGA-GCG
638 CTTTGAAAGGCG
* * *
933925 TCCTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGACGTCCT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCT
* * * *
933990 GCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTC
60 GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCTGCTC
* * * *
934055 TTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGCTCTTTGAGGACT
118 TTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
* * * * ** * *
934120 GGAAAATGACACCAACTCGTGTGGGCTTTGAAAGGTGTCCTACTCTTTGAGGACTGAAAGGTGCC
183 GG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCC
* * * *
934185 ACCAACTCGTGTGGGCTTTGAAATGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGT
247 ACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGG-GCCA--AA-----
* * *
934250 GTGGGCTTTGAAAGGAAAAGGTGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACTAACTTGTGTG
304 -T--G----G--A-G-AAAGGCGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTG
* * * *
934314 GGCTTTGAAAGGAAAAGGCATCCTGCTCATTGAGGACTAGGAGGTGCCACCAACTTGTGTGGGCT
357 GGCTTT-AAAAG-AAAGGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCT
* *
934379 TT-AAA-AGGCATCCTGCTCTTTGAGAACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGG
420 TTGAAAGAGGCATCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGG
* * * * * *
934442 TGTCCTGCTCTTTGAGGACT--AAAGGGCGA--AA--------GG---AGAGA-GCGTCCTACTC
484 CGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
* *
934491 TTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCGTGCTCTTTG
549 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCTGCTCTTTG
* * *
934555 AGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCG
608 AGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * * *
934598 T-CTAGCTCTTTAAGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGCTCT
1 TCCT-GCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* * ** * * *
934662 TTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTCAAAAGACATCCTGCTTTTTGAGGACT-
65 TTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTG
* * * * * *
934726 AAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGCTCTTTAAGGACT--AACGGGCG
129 GAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAA-GTGCC
* * * * **
934789 A--AA-----G-GAG-----AGA-GCGTCCTGCTCTTTGAGGAGTGGGAA-GTGCCACCAACTTG
192 ACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAACTTG
* * *
934839 TGTGGGCTTTAAAAAAGAAAGACGTCCTGCCCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTG
256 TGTGGGCTTT------GAAAGGCGTCCTGCTCTTTGAGGACTAAAAGG-GCCA--AA------T-
* * * ** * *
934904 GGCTTTGCAAAAAGAAAGCATCTTGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCT
305 -G----G-AGAAAG---GCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCT
* * ** *
934969 TT----GAAAGGCGTCCAGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTG-AA
361 TTAAAAGAAAGGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
* * * * * * *
935029 -AGGCGTCTTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAGACATCCT
426 GAGGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT
* *
935093 GCTCTTTGAGGACT-AAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGA
490 GCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
* * * * * * *
935157 GGACT-AACGG-GCGA--AA--------GG---AGAGA-GCGTCTTGCTCTTTGAGGAGTGGGAA
554 GGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT-GAAA
935206 GTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCG
618 GTGCCACCAACTTGTGTGGGCTTT------GAAAGGCG
* * * *
935244 TCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCT
* * * *
935309 GCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGACGTCCCGCTCTTTGAG
60 GCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAG
* * *
935374 GACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
124 GACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAA-G
* * ** * *
935439 TGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAAC
188 TGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAAC
* * **
935504 TTGTGTGGGCTTTGAAAGGAAAAGGCATCCTGCTCTTTGAGGGCTGGAAGGTGCCACCAACTTGT
253 TTGTGTGGGCTTT-----G-AAAGGCGTCCTGCTCTTTGAGGACTAAAAGG-GCCA--AA-----
* * ** * *
935569 GTGGGCATTGCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGTAAAATGCCACCAACTTGTGTAG
304 -T-GG-A--G--AA-AG---GCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGG
* ** * *
935634 GCTTT----GAAAGGCG-CCTAGCTCTTTAAGGACTAGAAAATGCCACCAACTCGTGTGGGTTTT
358 GCTTTAAAAGAAAGGCGTCCT-GCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT
* * * ** * *
935694 G-AA-AGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTCAAAAGACA
422 GAAAGAGGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * ** *
935757 TCCTGCTTTTTGAGGACT-AAAAGGTGCCACCAACTTGTGTAAGCTTTGAAAGGCATCCTGCTCT
486 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* * * * * *
935821 TTAAGGACT-AACGG-GCGA--AA--------GG---AGAGA-GCGTCCTGCTCTTTGAGGAGTG
550 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT-
* **
935870 GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGATG
614 GAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCG
* * * *
935912 TCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCT
* * *
935977 GCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGCTCTTTGAG
60 GCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAG
* * * *
936042 GACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTGAAAGG
124 GACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAA-G
* * * ** * *
936107 TGCCACCAACTCGTGTGGGCTTTGAAATGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAAC
188 TGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAAC
* * * **
936172 TTGTGTGGGCTTTGAAAGGAAAAGGCATCCTGCTCATTGAAGACTAGGAGGTGCCACCAACTTGT
253 TTGTGTGGGCTTT-----G-AAAGGCGTCCTGCTCTTTGAGGACTAAAAGG-GCCA--AA----T
* * * *
936237 GTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACT-GAAAGGTGCCGCCAACTTGTGTGGGCTTT
305 G-GAG-----AAAGGCGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTT
* * *
936301 ---A-AAAGGTGTCCTGCTCTTTGAGGACTA-AAGG-GCGA--AA---------G----GAGAGA
363 AAAAGAAAGGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGA
* * *
936345 -GCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAACAAGAAAGGCG
428 GGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCG
* ** * *
936409 TCGTGCTCTTTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGCTCT
486 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT-GCTCT
* * * *
936473 TTAAGGACTAGAAA-ATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGCTCTTTGAGGACT
550 TTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
* * ** * *
936537 GGGAAGTGCCACCAACTTTTGTGGGCTTCAAAAGACA
614 -GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
936574 TCCTGCT-TTTGAGGACT-AAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGCTCT
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* * * * * * *
936637 TTAAGGACT-AACGGGCGA--AA--------GG---AGAGA-GCGTCCTGCTCTTTGAGGAGTGG
65 TTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGG
* * *
936687 GAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGACGTCCTGCCCTTTGAGGACTGGAAGG
130 AAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCTGCTCTTTGAGGACTGGAA-G
*
936752 TGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGCAAAA--TG
188 TGCCACCAACTTGTGTGGGCTTT--AAA-AG---GCATCCTGCTCTTTGAGGACT--AAAAGGTG
* * **
936815 CCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGACACCAACTC
245 CCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT--AAAA-G-GGCCAA---
* * * * * *
936880 GTGTGGGCTTTGAAAGGTGTCCTACTCTTTGAGGACT-GAAAGGTGCCACCAACTCGTGTGGGCT
303 --AT-GG---AGAAAGGCGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCT
* * *
936944 TT----GAAATGTGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACTAACTTGTGTGGGCTTTGAA
361 TTAAAAGAAAGGCGTCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTGAA
** * * *
937004 AGGAAAAGGTGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGT
425 A-G---AGGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
** * **
937069 GTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGATCTTTGAAAAGCACCCTGCTC
485 GTCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
* * * * *
937133 TTTAAGGACT-AACGG-GCGA--AA--------GG---AGAGA-GCGTCCTGCTCTTTGAGGACT
549 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
*
937182 GGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCG
614 -GAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCG
* * * * **
937225 TCCTGCTCTTTGAGGACTGGAATGTGCCACCAAATTGTGTAGGCTTTGCAAAGAGAAAGCATTTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCT
* *
937290 GCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAG
60 GCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAG
* * * *
937355 GAGTGGGAAGTGCCACCAACTTGTGTGGGCGTTAAAAAAGAAAGGCGCCCTGCTCTTTGAGGACT
124 GACTGGAAAGTGCCACCAACTTGTGTGGGC-TT-----TGAAAGGCGTCCTGCTCTTTGAGGACT
*
937420 GGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGCAA
183 GGAA-GTGCCACCAACTTGTGTGGGCTTT--AAA-AG---GCATCCTGCTCTTTGAGGACT--AA
* **
937485 AA--TGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCAC
239 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT--AAAA-G-GGC
* * **
937548 CAACTCGTATGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTCATG
300 CAA-----AT-GG---AGAAAGGCGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTG
* * *
937612 TGGGCTTT----GAAAGGTGTCATGCTCTTTGAGGACT-GAAAGGTGCCACTAACTTGTGTGGGC
355 TGGGCTTTAAAAGAAAGGCGTCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGC
* **
937672 TTTGAATGGAAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG
419 TTTG-A---AAGAGGCATCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTG
* * * * *
937737 CAAAAAGAAAGCATCTTGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
479 ---AAAG---GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
* * *
937802 GCGTCCAGCTCTTTGAGGACTGGAAA-ATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGC
538 GCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGC
* * * * *
937866 TCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAGACA
602 TCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
937915 TCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAACTTTTGTGGGCTTTGAAAGGCATCCTGCTCT
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* * * * * *
937979 TTGAGGACT-AACGGGCGA--AA--------GG---AGAGA-GCGTCCTGCTCTTTGAGGAGTGG
65 TTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGG
* * *
938029 GAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAAAAAGGCGTCCTGCCCTTTGAGGACTGGAAGG
130 AAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCTGCTCTTTGAGGACTGGAA-G
* *
938094 TGCCACCAACTTGTGTGAGCTTTGCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGCAAAA--TG
188 TGCCACCAACTTGTGTGGGCTTT--AAA-AG---GCATCCTGCTCTTTGAGGACT--AAAAGGTG
* * * * *
938157 CCACCAACTTATGTAGGCTTTGAAAGACGTCCCGCTCTTTGAGGACTGGAAAA-TGCCACCAACT
245 CCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT--AAAAGGGCCA--AA--
* * *
938221 CGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTCGTGTGGGC
304 ----T-GG---AGAAAGGCGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGC
* *
938285 TTT----GAAAGGTGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACTAACTTGTGTGGGCTTTGA
360 TTTAAAAGAAAGGCGTCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTGA
* * * *
938345 AAGGAAAAGGCATCCTGCTCATTGAGGACTAGGAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
424 AA-G---AGGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG
* * *
938410 CATCCTGCTCTTTGAGGACT-GAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCT
484 CGTCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* * * *
938474 CTTTGAGGACT-AAAGG-GCGA--AA--------GG---AGAGA-GCGTCCTACTCTTTGAGGAC
548 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
*
938523 TGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCG
613 T-GAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCG
* ** * *
938567 TCGTGCTCTTTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGCTCT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT-GCTCT
* * * *
938631 TTAAGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGCTCTTTGAGGACTG
65 TTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTG
* * ** * * * **
938696 GGAAGTGCCACCAACTTTTGTGGGCTTCAAAAGACATCCTGCTTTTTGAGGACTAAAAGGTGCCA
129 GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAA-GTGCCA
* * * * ** * *
938761 CCAACTTGTGTAGGCTTTGAAAGGCATCCTGCTCTTTAAGGACTAATGGGCGAAAGGAGAGAGCG
193 CCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACT-A------AAAGGTGCCACCA
* * ** * * ** ** * * * **
938826 TCTTGCTCTTTGAGGAGTGGGAAGTGCCACCAACT-TGTGTGGGCTTTAA-----AAA---AGAA
251 ACTTG---TGTG-GGCTTTGAAAG-GCGTCCTGCTCTTTGAGGACTAAAAGGGCCAAATGGAGAA
* *
938882 AGACGTCCTGCGCTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAA-
311 AGGCGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTT--AAA-AGAAAG
* * ** *
938945 GCATCTTGCTCTTTGAGGACT-GCAAAATGCCACCAACTTGTGTAGGCTTTG-AA-AGGCATCCT
372 GCGTCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAGGCATCCT
* * * * *
939007 GCTTTTTGAGGACTGGAAAATGCCAGCAACTCGTATGGGCTTTGAAAGGCGTCCTGCTCTTTGAG
436 GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAG
* ** * *
939072 GACT-GAAAGGTGCCAGCAACTCATGTGGGCTTTGAAAGGTGTCATGCTCTTTGAGGACTGAAAG
500 GACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAG
* *
939136 GTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGC
564 GTGCCACCAACTTGTGTGGGC-TT---T-G-AAAGGCGTCCTGCTCTTTGAGGACTGAAA-GTGC
*
939201 CACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCA
622 CACCAACTTGTGTGGGCTTTG--AA-AG---GCG
* * * * * * *
939235 TCTTGCTCTTTGAGGACTGCAAAATGCCACCAACTTATGTAGGCTTTGAAAGACGTCCCGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* *
939300 TGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT-G
66 TGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGG
* ** *
939364 AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGATGTCCTGCTCTTTGAGGACTGAAAGGTGCCA
130 AAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAA-GTGCCA
* * **
939429 CTAACTTGTGTGGGCTTTGAAGGAAAAGGCATCCTGCTCATTGAGGACTAGGAGGTGCCACCAAC
193 CCAACTTGTGTGGGCTTT-----AAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAAC
* * * *
939494 TTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGC
253 TTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT-AAAAG-G--GCCAA-----AT-GG-
* * * * * *
939559 TTTGAAAGGTGTCCTGCTCTTTGAGGACT--AAAGGGCGA--AA--------GG-------AGAG
307 --AGAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAA
* * *
939605 A-GCGTCCTACTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGG
370 AGGCGTCCTGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTT--GAAAG--AGG
* * * * *
939668 CGTCGTGCTCTTTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGCT
430 CATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT-GCT
* * * * * * *
939732 CTTTAAGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTTCCTGCGCTTTTAGGA
493 CTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG-TCCTGCTCTTTGAGGA
* * * * ** * * * * *
939797 ATG-GAGTTGCCACACCAACTTTTGTGGGCTTCAAAAGACATCCGGCTAATTTGA-GACTAAAAG
557 CTGAAAGGTG-C-CACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT-CTTTGAGGACTGAAA-
* *
939860 GTGGCCACCAACTTGTGTAGGCTTTGAAAGAGGCAAA
618 GT-GCCACCAACTTGTGTGGGCTTTG-AA-AGGC--G
* * * * * * * *
939897 TCCTGATC-GTAAGGACT--AACGGGCGA--AA--------GG---AGAGA-GCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* ** * * *
939945 TGAGGAGTGGGAGTGCCACC-ACTTGTGT-GGCTTTAAAAAAGAAAGACGT-CTGCCCGTTTTAG
66 TGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCTGCTC-TTTGAG
* *
940007 GACTGG-AAGT-CCACCAACGTTGTGT-GGCTTTGCAAAGAGAAAGCTCTTGCTCTTTTGAGGAC
124 GACTGGAAAGTGCCACCAAC-TTGTGTGGGCTTTG-AAAG-G--CG-TCCTGCTC-TTTGAGGAC
* * * * * *
940069 TGCAAATGCCAACCAACAGTGTGTAGGCTTTGAAAAGGCATACCTGCTATTTGTAGGACGGAAAA
182 TGGAAGTGCC-ACCAAC-TTGTGTGGGCTTT-AAAAGGCAT-CCTGCTCTTTG-AGGAC-TAAAA
* * * * * * *
940134 TGAGACACCAACTCGTGTGGGCTTTGAAAGGTGTCCTACTCTTTTGAGGACTATGAAGGTGCCAC
241 GGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC-TTTGAGGACTA-AAAGG-GCCA-
* * * *
940199 CAACTCGTGTGGGCTTTGAAATGTGTCCTGCTCTTTGAGGCAACT--GAAGGTGACCAACTAACT
302 -AA------T-GG---AGAAAGGCGTCCTGCTCTTTGAGG--ACTGGGAA-GTG-CC-ACCAACT
* ** *
940262 TGTGTGGGCTTTGAAAGGAAAAGTATGTCCCTGAGCTCTTTGAGGACT-GAAAGGTG-CACTAAC
351 TGTGTGGGCTTT-AAAAG-AAAG-GCGT-CCT--GCTCTTTGAGGACTAG-AAGGTGCCACCAAC
* * * * * *
940325 TTGTGTGGGCTTTGAAGGAATGGCATCCTGCGCATTGA-GACT-AGGAGGGCCACCAA-TTGTGG
409 TTGTGTGGGCTTTGAAAG-A-GGCATCCTGCTCTTTGAGGACTGA-AAGTGCCACCAACTTGTGT
* * *
940387 GGGC-TTGAAAAGGCATCCTGCCTCTTTGAGGAC-GGAAGGTG-CGCCAACTTGGTGGTGGGGCT
471 GGGCTTTG-AAAGGCGTCCTG-CTCTTTGAGGACTGGAAAGTGCCACCAACTT-GT-GT-GGGC-
* * * *
940449 TTTGAAAGGTGTCCTGC-CTCTTGAGGACT-AAAGG-GCGA--AA--------GG---AGAGA-G
530 TTTGAAAGGCGTCCTGCTCT-TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
* * *
940497 CGTCCTACCTCTTTGA-GACTGGGAAGTGCCACC-ACTTGTGTGGGCTTTAAAAAGAAGGCG
594 CGTCCT-GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT---GA-AAGGCG
* * ** * * *
940557 TCGTGCTCTTGGAGGACTACAAAATGGCCACACCACTTGTGTAGAGGCCTGTTTTTAAAGGCGT-
1 TCCTGCTCTTTGAGGACTGGAAAGT-GCCAC-CAACTTGTGT-G-GG-C---TTTGAAAGGCGTC
* *
940621 CTAGCTC-TT-AAGACTAGAAAAG-GCCACCAACTCT-TGTGGGTTTTTG--AGGCGTCCTGCGT
58 CT-GCTCTTTGAGGACT-G-AAAGTGCCACCAACT-TGTGTGGG-CTTTGAAAGGCGTCCTGC-T
* * * *
940680 CGTTTTGAGG-CTGGGAAGTGCCACCACCAACTTTTGTGGGCTTTCAAAAAGGACATCCTGCTTT
117 C--TTTGAGGACTGGAAAGTG---CCACCAACTTGTGTGGGCTTT--GAAAGG-CGTCCTGC--T
* ** * *
940744 TTTTGAGGACTAAAAGGTGCGCACCAACTTGGTGTAGGCTTTGAAAGGCATCCT-CTCTTT-AGG
172 CTTTGAGGACTGGAA-GTGC-CACCAACTT-GTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGG
** * * * * ** *
940807 ACTAACCGG-GCGA--AA--------GG---AGAGA-GCGTCCTGCTCTTTGAGGAGTGGGAAGT
234 ACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT-AAAAGG
* * *
940857 GCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGACGTCCTGCCCTTTGAGGACT-GAAAGGTGCC
298 GCCA--AA------T-GG---------AGAAAGGCGTCCTGCTCTTTGAGGACTGGGAA-GTGCC
* * **
940921 ACCAACTTGTGTGGGCTTTGCAAAA-AGAA-GCATCTTGCTCTTTGAGGACT-GCAAAATGCCAC
344 ACCAACTTGTGTGGGCTTT--AAAAGA-AAGGCGTCCTGCTCTTTGAGGACTAG-AAGGTGCCAC
* * * * *
940983 CAACTTGTGTAGGCTTTG-AA-AGGCGTCCAGCTCTTTGAGGACTGGAAAATGCCACCAACTCGT
405 CAACTTGTGTGGGCTTTGAAAGAGGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGT
* * * * *
941046 GTGGGCTTTGAAAGGCGTCTTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCATTA
469 GTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTG
* * * *
941111 AAAGACATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTG-GGGCTTTGAAA-GCATCC
534 AAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
* * * * *
941174 TGCTCTTTGAGGACT-AACGGGCGA--AA--------GG---AGAGA-GCG
599 TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * *
941210 TCTTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTATGTGGGCTTTAAAAAAGAAAGGAGGCGT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT------G-AA--AGGCGT
* * * *
941275 CCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGGCTTTGCAAAGAGAAAGCATCTT
57 CCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGT-GGGCTTTG--AA-AG---GCGTCCT
* * * * *
941340 GCTCTTTGAGGACTGCAAA-TGCCAACAAACTTGTGTAGGCTTTGAAAGACGTCCCGCTCTTTGA
114 GCTCTTTGAGGACTGGAAAGTGCC-ACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
* * * * * *
941404 GGACTGGAGAAAATGCCACCAACTCGTGGTGTGGCGTTGAAAGGCGTCCTGCTCTTTGAGGACTG
178 GGACT-G-G-AAGTGCCACCAACTTGT-GTG-GGCTTTAAAAGGCATCCTGCTCTTTGAGGACTA
* * *
941469 AAAGGTGCCACC-ACTCGTTGTGGGCTTTGAAAGGTGTCCCTGCTCTTTGAGGACTGAAAGG
238 AAAGGTGCCACCAACTTG-TGTGGGCTTTGAAAGGCGT-CCTGCTCTTTGAGGACTAAAAGG
941530 CCACTAACTG
Statistics
Matches: 15766, Mismatches: 1896, Indels: 2567
0.78 0.09 0.13
Matches are distributed among these distances:
636 48 0.00
637 2 0.00
638 1 0.00
639 45 0.00
640 90 0.01
641 6 0.00
642 32 0.00
643 71 0.00
644 53 0.00
645 433 0.03
646 621 0.04
647 60 0.00
648 69 0.00
649 77 0.00
650 31 0.00
651 334 0.02
652 539 0.03
653 94 0.01
654 119 0.01
655 90 0.01
656 89 0.01
657 79 0.01
658 210 0.01
659 176 0.01
660 366 0.02
661 585 0.04
662 794 0.05
663 118 0.01
664 78 0.00
665 110 0.01
666 506 0.03
667 1385 0.09
668 4021 0.26
669 204 0.01
670 36 0.00
671 80 0.01
672 81 0.01
673 360 0.02
674 1580 0.10
675 83 0.01
676 29 0.00
677 106 0.01
678 143 0.01
679 55 0.00
680 146 0.01
681 37 0.00
682 68 0.00
683 290 0.02
684 248 0.02
685 133 0.01
686 47 0.00
687 20 0.00
688 12 0.00
689 197 0.01
690 175 0.01
691 146 0.01
692 7 0.00
693 6 0.00
694 3 0.00
695 52 0.00
696 49 0.00
697 40 0.00
698 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (649 bp):
TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
TGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGA
AAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAAGTGCCACCA
ACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGG
GCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGGCCAAATGGAGAAAGGCGTCCTGCTCTT
TGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCGTCCTGCTCTTTGAGGA
CTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAGGCATCCTGCTCTTTGAGGACTGAAAGT
GCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACT
TGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCT
TTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:924225 original size:26 final size:26
Alignment explanation
Indices: 924136--924225 Score: 76
Period size: 26 Copynumber: 3.3 Consensus size: 26
924126 GTGTAGGCTT
* *
924136 TGAAAGGCGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTACTCTTTGAGGAC
* * *
924162 TGAAAGGTGCCACCAACTCGTGTG-GG-C
1 TGAAAGGTG--TCCTACTC-TTTGAGGAC
924189 TTTGAAAGGTGTCCTACTCTTTGAGGAC
1 --TGAAAGGTGTCCTACTCTTTGAGGAC
924217 TGAAAGGTG
1 TGAAAGGTG
924226 CCACTAACTT
Statistics
Matches: 49, Mismatches: 8, Indels: 14
0.69 0.11 0.20
Matches are distributed among these distances:
26 20 0.41
27 9 0.18
28 8 0.16
29 12 0.24
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (26 bp):
TGAAAGGTGTCCTACTCTTTGAGGAC
Found at i:925295 original size:116 final size:114
Alignment explanation
Indices: 925064--925522 Score: 513
Period size: 116 Copynumber: 4.0 Consensus size: 114
925054 ACTAACGGGC
* * *
925064 GAAAGGAGAGAGCGTCCTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA
1 GAAA-GAGAAAGCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT----
* * *
925129 AAGAAAGACGTCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT
60 --GAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * *
925186 GCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAA
1 G-AAAGAGAAAGCGTCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAA
* *
925251 GGCGTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTCGTGTGGGCTTT
64 GGCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
925302 G-AA-AG---GCGTCCTGCTCTTTGAGGACTGAAAGGTACCACCAACTCGTGTGGGCTTTGAAAT
1 GAAAGAGAAAGCGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAG
* * *
925362 GTGTCCTGCTCTTTGAGGCCTGAAAGGTGCCACTAACTTGTGTGGGCTTT
65 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
925412 GAAAG-GAAAAGGTGTCCTGCTTTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTT-AA
1 GAAAGAG-AAA-GCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAA
*
925475 ATGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCA-CAACTTGTGTGGG
63 A-GGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGG
925523 ATTTTAAAAG
Statistics
Matches: 291, Mismatches: 32, Indels: 35
0.81 0.09 0.10
Matches are distributed among these distances:
109 7 0.02
110 85 0.29
111 3 0.01
113 2 0.01
114 2 0.01
115 15 0.05
116 119 0.41
117 6 0.02
121 1 0.00
122 48 0.16
123 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.27
Consensus pattern (114 bp):
GAAAGAGAAAGCGTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG
CGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:926778 original size:116 final size:114
Alignment explanation
Indices: 926565--928596 Score: 1746
Period size: 116 Copynumber: 17.9 Consensus size: 114
926555 GCGTCCTACA
* * *
926565 CTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCATGCTATTT
1 CTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGTCCTGCTCTTT
* * * * *
926630 GAGAACTGGAAGGTGCCATCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCT
59 GAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAGAGAAAGCATCCTGCT
* * *
926687 CTTTGAGGACTGCAAAATGCAACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
1 CTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
* * *
926752 TGAAAAATGCCACCAACTCGTATGGGCTTTG-AA-AG---GCATCCTGCT
65 TGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAGAAAGCATCCTGCT
** * *
926797 CTTTGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGGTGTCATGCTCTTTGAGGAC
1 CTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
* * * * *
926862 TGAAAGGTGCCACTAACTTGTGTGAGCTTTGAATG-GAAAAGGCATCCTACT
65 TGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAG-AAA-GCATCCTGCT
* * * * * *
926913 CTTTAAGGGCTGGAAGGTGCCACCAACTTGTGTGGGCATTGCAAAGAGAAATCATCTTGCTCTTT
1 CTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAG-G----CGTCCTGCTCTTT
* *
926978 GAGGACTGCAAAA-TGCCACCAACTTGTGTAGGCTTTG-AA-AG---GCGT-CTAGCT
59 GAGGACTG-AAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAGAAAGCATCCT-GCT
* * *
927029 CTTTGAGGACTGGAAAAATGCCACCAACTCGTGTGTGCTTTGAAAGGCGTCCTGCTCTTTGAGGA
1 CTTTGAGGACT-G-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGA
* *
927094 CT-AGGAAGTGCCACCAACTTTTGTGGGCTTT-AAA-AG--A-CATCCTGCT
64 CTGA-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAGAAAGCATCCTGCT
* * *
927140 CTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAGGACGTCCTGCCCTTT
1 CTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT----GA-AAGG-CGTCCTGCTCTTT
* * * *
927205 GAGGATTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCT
59 GAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAGAGAAAGCATCCTGCT
* * *
927262 CTTTGAGGACTGCAAAATGCCACCAACTCT-TGTAGGCTTTGAAAGGCATCCTGCTCTTTGAGGA
1 CTTTGAGGACTG-AAAGTGCCACCAACT-TGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGA
* * *
927326 CTGAAAAATGCCACCAACTCGTGTGGGCTTTG-AA-AG---GCGTCCTGCT
64 CTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAGAAAGCATCCTGCT
* *
927372 CTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGAC
1 CTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
** * * *
927437 TGAATGGTGCCACTAACTTGTGTGCGCTTTGAAAG-GAAAAGGCGTCCTGCT
65 TGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAG-AAA-GCATCCTGCT
* * * * * *
927488 CTTTGAGGACTAGGAAGTGCGACCAACTTGTGTGGGCTTTAAAAGGTGTCTTTCTCTTTGAGGAC
1 CTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
*
927553 T-AAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGA-AAAGGCGTCCTGCT
65 TGAAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGAGAAA-GCATCCTGCT
* * * *
927603 CTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGACGTCCCGCTCTTTGAGGAC
1 CTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
* *
927668 TGGAAAA-TGCCACCAACTCGTGTGGGCTTTG-AA-AG---GCGTCCTGCT
65 T-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAGAAAGCATCCTGCT
* *
927713 CTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGAC
1 CTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
* * *
927778 TGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAG-GAAAAGGCATCCTACT
65 TGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAG-AAA-GCATCCTGCT
* * * *
927829 CATTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGAC
1 CTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
* * *
927894 TGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAG-G--TG--TCCTGCT
65 TGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAGAAAGCATCCTGCT
* * * * *
927939 CTTTGAGGACT-AAAGGGCGA--AA--------GG---AGAGA-GCGTCCTACTCTTTGAGGACT
1 CTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
** * * * *
927989 GGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCGTGCT
66 GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAGAAA-GCATCCTGCT
* * * * *
928039 CTTTGAGAACTGGAAGGTGCCATCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCTTT
1 CTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGTCCTGCTCTTT
* * *
928104 GAGGACTGCAAAA-TGCCACCAACATGTGTAGGCTTTG-AA-AG---GCGTCCTGCT
59 GAGGACTG-AAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAGAAAGCATCCTGCT
* * * * * * *
928155 CTTTGAGGATTGGAAAATGCCACCAACTCGTATGGGCTTTGAAAGACATCCTACTCTTTGAGGAC
1 CTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
* ** * *
928220 TGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAG-G--TG--TCATGCT
65 TGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAGAAAGCATCCTGCT
* *
928265 CTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGCATCCTGCTCTTT
1 CTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGC-TT---T-G-AAAGGCGTCCTGCTCTTT
* * * * *
928330 GAGGGCTGGAAGGTGCCACCAACTTGTGTGGGCATTGCAAAGAGAAAGCATCTTGCT
59 GAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAGAGAAAGCATCCTGCT
* * *
928387 CTTTGAGGACTGTAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCG-CCTAGCTCTTTAAGGA
1 CTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT-GCTCTTTGAGGA
* * *
928451 CTAGAAAA-TGCCACCAACTCGTGTGGGTTTTG-AA-AG---GCGTCCTGCT
64 CT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAGAAAGCATCCTGCT
* * * * *
928497 CTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAGACATCCTGCTCTTTGAGGAC
1 CTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
*
928562 T-AAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAG
65 TGAAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAG
928597 GCATCCTGCT
Statistics
Matches: 1566, Mismatches: 222, Indels: 254
0.77 0.11 0.12
Matches are distributed among these distances:
94 47 0.03
95 3 0.00
98 3 0.00
100 16 0.01
102 6 0.00
104 2 0.00
106 2 0.00
108 10 0.01
109 24 0.02
110 456 0.29
111 78 0.05
112 6 0.00
113 9 0.01
114 13 0.01
115 105 0.07
116 512 0.33
117 53 0.03
118 8 0.01
119 2 0.00
120 3 0.00
121 8 0.01
122 188 0.12
123 12 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (114 bp):
CTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAGAAAGCATCCTGCT
Found at i:927786 original size:26 final size:26
Alignment explanation
Indices: 927697--927786 Score: 76
Period size: 26 Copynumber: 3.3 Consensus size: 26
927687 GTGTGGGCTT
*
927697 TGAAAGGCGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTGCTCTTTGAGGAC
* ** *
927723 TGAAAGGTGCCACCAACTCGTGTG-GG-C
1 TGAAAGGTG--TCCTGCTC-TTTGAGGAC
927750 TTTGAAAGGTGTCCTGCTCTTTGAGGAC
1 --TGAAAGGTGTCCTGCTCTTTGAGGAC
927778 TGAAAGGTG
1 TGAAAGGTG
927787 CCACTAACTT
Statistics
Matches: 48, Mismatches: 9, Indels: 14
0.68 0.13 0.20
Matches are distributed among these distances:
26 20 0.42
27 8 0.17
28 8 0.17
29 12 0.25
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.27
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGAGGAC
Found at i:928856 original size:116 final size:114
Alignment explanation
Indices: 928625--931083 Score: 1620
Period size: 116 Copynumber: 21.8 Consensus size: 114
928615 ACTAACGGGC
* * *
928625 GAAAGGAGAGAGCGTCCTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA
1 GAAA-GAGAAAGCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT----
* * *
928690 AAGAAAGACGTCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT
60 --GAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * *
928747 GCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAA
1 G-AAAGAGAAAGCGTCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAA
* *
928812 GGCGTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTCGTGTGGGCTTT
64 GGCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT
* *
928863 G-AA-AG---GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAT
1 GAAAGAGAAAGCGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAG
* *
928923 GTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTT
65 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * *
928973 GAAAG-GAAAAGGTGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTATGTGGGCTTTAAA
1 GAAAGAG-AAA-GCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAA
* * * * *
929037 AGGTGTCTTGTTCTTTGTGGACTGAAATGTGCCACCAACTTGTGTGGGCTTT
63 AGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * * * * * ** *
929089 GAAA-AG-CA-C--CCTGCACTTTGAGGACT-AACGGGCGA--AA-----G-GAG---AGAGCGT
1 GAAAGAGAAAGCGTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG
* * * **** * * * ** ** *
929137 CCTGCT-CT-TTGAG-GACTGGGAAGTG-CCAC-CAACTTGTGTG-GGCTTTAA
66 CGTCCTGCTCTT-TGAGGACTGAAAG-GTGC-CACCAACT-TGTGTGGGCTT-T
* * * *
929185 AAAAGA-AAGGCGTCCTGCTCTTTGAGGACTGGAATGTGCCACCAAATTGTGTGGGCTTTGCAAA
1 GAAAGAGAAAGCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA
* ** * **
929249 GAGAAAGCATTTTGCTCTTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAAGCTTT
63 -AG---GCGTCCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTT
* *
929305 G-AA-AG---GCGTCCTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAA
1 GAAAGAGAAAGCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT-----
* *
929365 AGAAAGGCGCCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT
60 -GAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * *
929421 GCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGCAAAATGCCACCAACTCT-TGTAGGCTTTGAA
1 G-AAAGAGAAAGCGTCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACT-TGTGTGGGCTTTGAA
* ** *
929485 AGGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTCGTGTGGGCTTT
63 AGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
929537 G-AA-AG---GCGTCCTACTCTTTGAGGACTGAAAGGTGCCACTAACTCGTGTGGGCTTTGAAAG
1 GAAAGAGAAAGCGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAG
* * * *
929597 GTGTCCTGCTCTTTGAGGACTGAATGGTGCCACTAACTTGTGTGCGCTTT
65 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
929647 GAAAG-GAAAAGGCGTCCTGCTCTTTGAGGACTAGGAAGTGCGACCAACTTGTGTGGGCTTTAAA
1 GAAAGAG-AAA-GCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAA
* * * * *
929711 AGGTGTCTTACTCTTTGGGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
63 AGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
929763 G-AA-AG---GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACGTGTATGGGCTTTGAAAG
1 GAAAGAGAAAGCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
* **
929823 GCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTT
65 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
929873 G-AA-AG---GTGTCATGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAATG
1 GAAAGAGAAAGCGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGC-TT---T-
* * * * * *
929933 GAAAAGGCATCCTACTCTTTAAGGGCTGGAAGGTGCCACCAACTTGTGTGGGCATT
60 G-AAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * *
929989 GCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAA
1 G-AAAGAGAAAGCGTCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAA
* * * *
930054 GGCGT-CTAGCTCTTTGAGGACTGGAAA-ATGCCACCAACTCGTATGTGCTTT
64 GGCGTCCT-GCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
930105 G-AA-AG---GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAG
1 GAAAGAGAAAGCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
* * * *
930165 ACATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTT
65 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * * * * * ** *
930215 G-AA-AG---GCATCCTGCTCTTTAAGGACT-AACGGGCGA--AA-----G-GAG---AGAGCGT
1 GAAAGAGAAAGCGTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG
* * * * * * ** ** *
930263 CCTGCT-CT-TTGAGGAGTG---GGAAGTG-CCAC-CAACTTGTGTG-GGCTTTAA
66 CGTCCTGCTCTT--TGAG-GACTGAAAG-GTGC-CACCAACT-TGTGTGGGCTT-T
* * *
930311 AAAAGA-AAGA-CGTCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAA
1 GAAAGAGAA-AGCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--A
* * * * *
930374 AGAGAAAGCATCTTGCTCTTTTAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTT
62 A-AG---GCGTCCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
930431 G-AA-AG---GCGTCCTGCTCTTTGAGGACTGGAAAATGACACCAACTCGTGTGGGCTTTGAAAG
1 GAAAGAGAAAGCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
* * *
930491 GCATCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTT
65 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
930541 ----GA-AATGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAG
1 GAAAGAGAAAGCGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----
* *
930601 GAAAAGGTGTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTT
60 G-AAAGGCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT
* *
930657 -AAA-AG---GTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGTGCTTTAAAAG
1 GAAAGAGAAAGCGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT----G
* *
930717 AAAAGGCGTCCTGCTCTTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTT
61 -AAAGGCGTCCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTT
* *
930772 G-AA-AG--A-CGT-CTCGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAA
1 GAAAGAGAAAGCGTCCT-GCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAA
*
930831 GGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTT
64 GGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* *
930882 G-AA-AG---GTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAG
1 GAAAGAGAAAGCGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-----
* * *
930942 GAAAAGGCATCCTGCTCATTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTT
60 G-AAAGGCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT
* *
930998 -AAA-AG---GCATCCTGCTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAG
1 GAAAGAGAAAGCGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAG
*
931058 GTGTCCTGCTCTTTGAGGACT-AAAGG
65 GCGTCCTGCTCTTTGAGGACTGAAAGG
931084 GCGAAAGGAG
Statistics
Matches: 1851, Mismatches: 312, Indels: 361
0.73 0.12 0.14
Matches are distributed among these distances:
95 26 0.01
96 19 0.01
97 16 0.01
98 3 0.00
100 37 0.02
101 2 0.00
102 12 0.01
104 4 0.00
106 4 0.00
108 13 0.01
109 34 0.02
110 620 0.33
111 15 0.01
113 10 0.01
114 13 0.01
115 106 0.06
116 693 0.37
117 19 0.01
118 9 0.00
119 18 0.01
120 17 0.01
121 24 0.01
122 130 0.07
123 7 0.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (114 bp):
GAAAGAGAAAGCGTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG
CGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:929566 original size:26 final size:26
Alignment explanation
Indices: 929536--929625 Score: 76
Period size: 26 Copynumber: 3.3 Consensus size: 26
929526 GTGTGGGCTT
*
929536 TGAAAGGCGTCCTACTCTTTGAGGAC
1 TGAAAGGTGTCCTACTCTTTGAGGAC
* *
929562 TGAAAGGTGCCACTAACTCGTGTG-GG-C
1 TGAAAGGTGTC-CT-ACTC-TTTGAGGAC
*
929589 TTTGAAAGGTGTCCTGCTCTTTGAGGAC
1 --TGAAAGGTGTCCTACTCTTTGAGGAC
*
929617 TGAATGGTG
1 TGAAAGGTG
929626 CCACTAACTT
Statistics
Matches: 50, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
26 20 0.40
27 8 0.16
28 9 0.18
29 13 0.26
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (26 bp):
TGAAAGGTGTCCTACTCTTTGAGGAC
Found at i:929595 original size:29 final size:29
Alignment explanation
Indices: 929514--929599 Score: 83
Period size: 29 Copynumber: 3.1 Consensus size: 29
929504 GACTGAAAAA
*
929514 TGCCACCAACTCGTGTGGGCTTTGAAAGG
1 TGCCACTAACTCGTGTGGGCTTTGAAAGG
* * *
929543 CGTC-CT-ACTC-TTTGAGGAC--TGAAAGG
1 TGCCACTAACTCGTGTG-GG-CTTTGAAAGG
929569 TGCCACTAACTCGTGTGGGCTTTGAAAGG
1 TGCCACTAACTCGTGTGGGCTTTGAAAGG
929598 TG
1 TG
929600 TCCTGCTCTT
Statistics
Matches: 43, Mismatches: 7, Indels: 14
0.67 0.11 0.22
Matches are distributed among these distances:
26 12 0.28
27 9 0.21
28 8 0.19
29 14 0.33
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (29 bp):
TGCCACTAACTCGTGTGGGCTTTGAAAGG
Found at i:930615 original size:171 final size:168
Alignment explanation
Indices: 930259--931083 Score: 1008
Period size: 171 Copynumber: 4.8 Consensus size: 168
930249 AAAGGAGAGA
* *
930259 GCGTCCTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGACGT
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGT
* * * *
930324 CCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTG
59 CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-G--TG--TCCTG
* *
930389 CTCTTTTAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTT----GAAAG
118 CTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGAAAG
* * * * *
930436 GCGTCCTGCTCTTTGAGGACTGGAAAATGACACCAACTCGTGTGGGCTTTGAAAGGCATCCTACT
1 GCGTCCTGCTCTTTGAGGACTGG-AAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* *
930501 CTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAATGTGTCCTGCTCTTTGAGGAC
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGAC
* *
930566 TGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAG
130 TGAAAGGTGCCACCAACTTGTGTAGGCTTTGAAA-G-AAAG
* * *
930607 GTGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* *
930672 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGTGCTTTAAAAGAAAAGGCGTCCTGCTCTTTG
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTCCTGCTCTTTG
*
930737 AGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTGAAAG--A-
125 AGGACTG-AAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGAAAG
* *
930778 -CGT-CTCGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGC
1 GCGTCCT-GCTCTTTGAGGACTGG-AAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGC
*
930841 TCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGA
64 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGA
* *
930906 CTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAG
129 CTGAAAGGTGCCACCAACTTGTGTAGGCTTTGAAA-G-AAAG
* * * *
930948 GCATCCTGCTCATTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCT
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
*
931013 CTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGAC
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGAC
931078 T-AAAGG
130 TGAAAGG
931084 GCGAAAGGAG
Statistics
Matches: 571, Mismatches: 51, Indels: 59
0.84 0.07 0.09
Matches are distributed among these distances:
164 6 0.01
165 88 0.15
166 2 0.00
167 1 0.00
169 6 0.01
170 100 0.18
171 262 0.46
172 7 0.01
175 2 0.00
176 51 0.09
177 46 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (168 bp):
GCGTCCTGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT
GAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGAAAG
Found at i:930915 original size:26 final size:26
Alignment explanation
Indices: 930826--930915 Score: 76
Period size: 26 Copynumber: 3.3 Consensus size: 26
930816 GTGTGGGCTT
*
930826 TGAAAGGCGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTGCTCTTTGAGGAC
* ** *
930852 TGAAAGGTGCCACCAACTCGTGTG-GG-C
1 TGAAAGGTG--TCCTGCTC-TTTGAGGAC
930879 TTTGAAAGGTGTCCTGCTCTTTGAGGAC
1 --TGAAAGGTGTCCTGCTCTTTGAGGAC
930907 TGAAAGGTG
1 TGAAAGGTG
930916 CCACTAACTT
Statistics
Matches: 48, Mismatches: 9, Indels: 14
0.68 0.13 0.20
Matches are distributed among these distances:
26 20 0.42
27 8 0.17
28 8 0.17
29 12 0.25
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.27
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGAGGAC
Found at i:931990 original size:116 final size:114
Alignment explanation
Indices: 931754--933882 Score: 1362
Period size: 116 Copynumber: 19.0 Consensus size: 114
931744 ACTAACGGGC
* * * *
931754 GAAAGGAGAGAGCGTCCTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA
1 GAAA-GAGAAAGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT----
* * * *
931819 AAGAAAGACGTCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTTGGCTTT
60 --GAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
931876 GCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAA
1 G-AAAGAGAAAGCATCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAA
* *
931941 GGCGTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTCGTGTGGGCTTT
64 GGCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT
* *
931992 G-AA-AG---GCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAT
1 GAAAGAGAAAGCATCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAG
* *
932052 GTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTT
65 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
** * *
932102 GAAAG-GAAAAGGTGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAA
1 GAAAGAG-AAA-GCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAA
*
932166 AGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
63 AGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * * * * ** *
932218 ----GA-AAAGCACCCTGCTCTTTGAGGACT-AACGGGCGA--AA-----G-GAG---AGAGCGT
1 GAAAGAGAAAGCATCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG
* * * **** * * * ** ** *
932266 CCTGCT-CT-TTGAG-GACTGGGAAGTG-CCAC-CAACTTGTGTG-GGCTTTAA
66 CGTCCTGCTCTT-TGAGGACTGAAAG-GTGC-CACCAACT-TGTGTGGGCTT-T
* * * * *
932314 AAAAGA-AAGGCGTCCTGCTCTTTGAGGACTGGAATGTGCCACCAAATTGTGTGGGCTTTGCAAA
1 GAAAGAGAAAGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG--AA
* ** * *
932378 GAGAAAGCATTTTGCTCTTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTT
63 -AG---GCGTCCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
932434 G-AA-AG---GCGTCCTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAA
1 GAAAGAGAAAGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT-----
* *
932494 AGAAAGGCGCCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT
60 -GAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
932550 GCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAA
1 G-AAAGAGAAAGCATCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAA
* * *
932615 GGCGTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTCGTATGGGCTTT
64 GGCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT
* **
932666 G-AA-AG---GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAG
1 GAAAGAGAAAGCATCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAG
* * *
932726 GTGTCATGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTT
65 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* **
932776 GAATG-GAAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCA
1 GAAAGAG-AAA-GCATCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTG--
* * * *
932840 AAAAGAAAGCATCTTGCTCTTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTT
61 -AAAG---GCGTCCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTT
* * * *
932898 G-AA-AG---GCGT-CAGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAG
1 GAAAGAGAAAGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
* *
932957 GCGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTTTGTGGGCTTT
65 GCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT
*
933007 -AAA-AG--A-CATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
1 GAAAGAGAAAGCATCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAG
* * * ** *** * **
933067 GCATCCTGCTCTTTGAGGACT-AACGG-GCGAAAGGAGAGAGCGTCCTGCTCTTT
65 GCGTCCTGCTCTTTGAGGACTGAAAGGTGC--CACCA-A-CTTGT-GTGGGCTTT
* * * ** * * * *
933120 GAGGAGTGGGAAGTGCCA-CCAACT-TGTGTGGGCTTTAAA-----A--AA--------------
1 GA--A-AGAGAA-AG-CATCCTGCTCTTTGAGGAC-TGAAAGTGCCACCAACTTGTGTGGGCTTT
*
933162 GAAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT
60 GAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
933217 GCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGCAAA-TGCCACCAACTTATGTAGGCTTTGAAA
1 G-AAAGAGAAAGCATCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAA
* * * *
933281 GACGTCCCGCTCTTTGAGGACTGGAAA-ATGCCACCAACTCGTGTGGGCTTT
64 GGCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT
* *
933332 G-AA-AG---GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAG
1 GAAAGAGAAAGCATCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAG
** *
933392 ATGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTT
65 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * *
933442 GAAAG-GAAAAGGCATCCTGCTCATTGAGGACTAGGAGGTGCCACCAACTTGTGTGGGCTTTAAA
1 GAAAGAG-AAA-GCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAA
* *
933506 AGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTT
63 AGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * * *
933558 GAAAG-G--TG--TCCTGCTCTTTGAGGACT-AAAGGGCGA--AA--------GG---AGAGA-G
1 GAAAGAGAAAGCATCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG
* *
933603 CGTCCTACTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTT
66 CGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * * * * *
933652 AAAAAAGAAAGGCGTCGTGCTCTTTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAA
1 GAAAGAGAAA-GCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAA
* * * *
933717 GGCGT-CTAGCTCTTTAAGGACTAGAAA-ATGCCACCAACTCGTGTGGGTTTT
64 GGCGTCCT-GCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * **
933768 G-AA-AG---GCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTCAAAAG
1 GAAAGAGAAAGCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
* * * * *
933828 ACATCCTGCTATTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTT
65 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
933878 GAAAG
1 GAAAG
933883 GCATCCTGCT
Statistics
Matches: 1570, Mismatches: 266, Indels: 352
0.72 0.12 0.16
Matches are distributed among these distances:
93 2 0.00
94 50 0.03
95 34 0.02
96 10 0.01
97 12 0.01
98 6 0.00
99 2 0.00
100 69 0.04
101 6 0.00
102 14 0.01
104 4 0.00
106 4 0.00
108 16 0.01
109 94 0.06
110 422 0.27
111 16 0.01
112 11 0.01
113 13 0.01
114 9 0.01
115 95 0.06
116 472 0.30
117 11 0.01
118 4 0.00
119 13 0.01
120 10 0.01
121 21 0.01
122 142 0.09
123 8 0.01
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (114 bp):
GAAAGAGAAAGCATCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG
CGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:932121 original size:171 final size:164
Alignment explanation
Indices: 931765--942251 Score: 5439
Period size: 171 Copynumber: 63.0 Consensus size: 164
931755 AAAGGAGAGA
* *
931765 GCGTCCTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGACGT
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGT
* * * *
931830 CCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTTGGCTTTGCAAAGAGAAAGCATCTTG
59 CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAA-AG--AG--TCCTG
931895 CTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
118 CTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * *
931942 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGG-AAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* * *
932007 CTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAATGTGTCCTGCTCTTTGAGGAC
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGAGGAC
* * *
932072 TG-AAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAG
130 TGCAAA-ATGCCACCAACTTGTGTAGGCTTT-----G-AAAG
* * *
932113 GTGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
*
932178 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGCA-CCCTGCTCTTTGAGGA
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG-AGTCCTGCTCTTTGAGGA
*** * *
932242 CT--AACGGGCGA--AA---G-G-A------GAGA-
129 CTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
932262 GCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGT
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGT
* * * **
932327 CCTGCTCTTTGAGGACTGGAATGTGCCACCAAATTGTGTGGGCTTTGCAAAGAGAAAGCATTTTG
59 CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAA-AG--AG--TCCTG
932392 CTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
118 CTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* *
932439 GCGTCCTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGC
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGT
* *
932504 CCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTG
59 CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAA-AG--AG--TCCTG
932569 CTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
118 CTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * *
932616 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTATGGGCTTTGAAAGGCGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGG-AAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
** * * *
932681 CTTTGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGGTGTCATGCTCTTTGAGGAC
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGAGGAC
* * *
932746 TG-AAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAG
130 TGCAAA-ATGCCACCAACTTGTGTAGGC-TT---T-G-AAAG
* * *
932787 GTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCAT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTG---AAAG---GCGT
* * * * * *
932852 CTTGCTCTTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CAGCTCTT
59 CCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTT
* * *
932915 TGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAG
123 TGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * * *
932957 GCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAGACATCCTGCT
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* *
933022 CTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCA-TCCTGCTCTTTGAGGA
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG-AGTCCTGCTCTTTGAGGA
*** * *
933086 CT--AACGGGCGA--AA---G-G-A------GAGA-
129 CTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
*
933106 GCGTCCTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGT
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGT
* *
933171 CCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTG
59 CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAA-AG--AG--TCCTG
*
933236 CTCTTTGAGGACTGC-AAATGCCACCAACTTATGTAGGCTTTGAAAG
118 CTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * * *
933282 ACGTCCCGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGG-AAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
*
933347 CTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTG-AAAGATGTCCTGCTCTTTGAGGA
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGA-GTCCTGCTCTTTGAGGA
* * *
933411 CTG-AAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAG
129 CTGCAAA-ATGCCACCAACTTGTGTAGGCTTT-----G-AAAG
* * * * *
933453 GCATCCTGCTCATTGAGGACTAGGAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCT
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* * *
933518 CTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGAC
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGAGGAC
** * *
933583 T--AAAGGGCGA--AA---G-G-A------GAGA-
130 TGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
*
933602 GCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGT
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGT
* ** * * *
933667 CGTGCTCTTTGAGGACT-ACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGCTCT
59 CCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCT-GCTCT
* * * *
933730 TTAAGGACTAG-AAAATGCCACCAACTCGTGTGGGTTTTGAAAG
122 TTGAGGACT-GCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* ** * *
933773 GCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTCAAAAGACATCCTGCT
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* * * * *
933838 ATTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCA-TCCTGCTCTTTAAGGA
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG-AGTCCTGCTCTTTGAGGA
*** * *
933902 CT--AACGGGCGA--AA---G-G-A------GAGA-
129 CTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* *
933922 GCGTCCTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGACGT
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGCGT
* * *
933987 CCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTG
59 CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAA-AG--AG--TCCTG
934052 CTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
118 CTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * * * * *
934099 GCATCCTGCTCTTTGAGGACTGGAAAATGACACCAACTCGTGTGGGCTTTGAAAGGTGTCCTACT
1 GCGTCCTGCTCTTTGAGGACTGG-AAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* * *
934164 CTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAATGTGTCCTGCTCTTTGAGGAC
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGAGGAC
* * *
934229 TG-AAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAG
130 TGCAAA-ATGCCACCAACTTGTGTAGGCTTT-----G-AAAG
* * * *
934270 GTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCAT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGT
* *
934335 CCTGCTCATTGAGGACT-AGGAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-GCATCCTGCTC
59 CCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAG--TCCTGCTC
* * * *
934397 TTTGAGAACTG-AAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAG
121 TTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTGAAAG
* * * * * * *
934441 GTGTCCTGCTCTTTGAGGACT-AAAGGGCGA--AA--------GG---AGAGA-GCGTCCTACTC
1 GCGTCCTGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
* * *
934491 TTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCGTGCTCTTTG
66 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-GAAAAG--A---GTCCTGCTCTTTG
*
934555 AGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
125 AGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * * * *
934595 GCGT-CTAGCTCTTTAAGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGC
1 GCGTCCT-GCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGC
* * * * *
934659 TCTTTGAGGACTGGGAA-GTGCCACCAACTTTTGTGGGC-TTCAAAAGACATCCTGCTTTTTGAG
64 TCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGA-GTCCTGCTCTTTGAG
934722 GACT--AAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAG
127 GACTGCAAAA--TGCCACCAACTTGTGTAGGCTTTGAAAG
* * * * * *
934760 GCATCCTGCTCTTTAAGGACT--AACGGGCGA--AA--------GG---AGAGA-GCGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* * * *
934809 CTTTGAGGAGTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGACGTCCTGCCCTT
65 CTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT----GA-AAAGA-GTCCTGCTCTT
* *
934873 TGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAG
123 TGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTG---AAAG
* * * * * *
934918 AAAGCATCTTGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCA
1 ---GCGTCCTGCTCTTTGAGGACTG-GAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT
* * * * *
934983 GCTCTTTGAGGACTGGAAA-ATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCTTGCTCTTTGA
62 GCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGA
** * * * *
935047 GGACTGGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAG
126 GGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * ** *
935086 ACATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* * * * * * *
935151 CTTTGAGGACT-AACGG-GCGA--AA--------GG---AG-AGAGCGTCTTGCTCTTTGAGGAG
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGAGGAC
** * *
935200 TGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAG
130 TGCAAAATGCCACCAACTTGTGTAGGCTTT------GAAAG
* *
935241 GCGTCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCAT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGT
* * * *
935306 CTTGCTCTTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTG-AAAGACGTCCCGCTCT
59 CCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGA-GTCCTGCTCT
* * *
935369 TTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAG
122 TTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * *
935412 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* *
935477 CTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCCTGCTCTTT
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AA--AAGA-G--TCCTGCTCTTT
* * ** * *
935542 GAGGGCTGGAAGGTGCCACCAACTTGTGTGGGCATTGCAAAGAG
124 GAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTG--AA-AG
* * * * *
935586 AAAGCATCTTGCTCTTTGAGGACTGTAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCG-CCT
1 ---GCGTCCTGCTCTTTGAGGACTG-GAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT
* * * * * *
935650 AGCTCTTTAAGGACTAGAAA-ATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGCTCTTTG
62 -GCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTG
** * * * **
935714 AGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTCAAAAG
125 AGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * * ** ** *
935754 ACATCCTGCTTTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAAGCTTTGAAAGGCATCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* * * * * * *
935819 CTTTAAGGACT-AACGG-GCGA--AA--------GG---AG-AGAGCGTCCTGCTCTTTGAGGAG
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGAGGAC
** * *
935868 TGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAG
130 TGCAAAATGCCACCAACTTGTGTAGGCTTT------GAAAG
** * *
935909 ATGTCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCAT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGT
* * * *
935974 CTTGCTCTTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTGAAAGGCA-TCCTGCTCT
59 CCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG-AGTCCTGCTCT
* * *
936037 TTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAG
122 TTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * * * *
936080 GCGTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAATGTGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* * *
936145 CTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCCTGCTCATT
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AA--AAGA-G--TCCTGCTCTTT
* * ** * *
936210 GAAGACTAG-GAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
124 GAGGACT-GCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * * * *
936251 GCATCCTGCTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* * * * *
936316 CTTTGAGGACT-AAAGG-GCGA--AA--------GG---AG-AGAGCGTCCTACTCTTTGAGGAC
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGAGGAC
** * *
936365 TGGGAAGTGCCACCAACTTGTGTGGGCTTTAAACAAGAAAG
130 TGCAAAATGCCACCAACTTGTGTAGGCTTT------GAAAG
* ** * *
936406 GCGTCGTGCTCTTTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGC
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT-GC
* * * * * *
936470 TCTTTAAGGACTAGAAA-ATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGCTCTTTGAGG
64 TCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGAGG
** * * * **
936534 ACTGGGAAGTGCCACCAACTTTTGTGGGCTTCAAAAG
128 ACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * ** * *
936571 ACATCCTGCT-TTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* * * * * * *
936635 CTTTAAGGACT-AACGG-GCGA--AA--------GG---AG-AGAGCGTCCTGCTCTTTGAGGAG
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGAGGAC
** * *
936684 TGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAG
130 TGCAAAATGCCACCAACTTGTGTAGGCTTT------GAAAG
* * *
936725 ACGTCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCAT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGT
* * * *
936790 CTTGCTCTTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTGAAAGGCA-TCCTGCTCT
59 CCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG-AGTCCTGCTCT
* * * *
936853 TTGAGGACTGGAAAATGACACCAACTCGTGTGGGCTTTGAAAG
122 TTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * * * * *
936896 GTGTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAATGTGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* *
936961 CTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGTGTCCTGCTCTTT
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-----GAAAA-GAGTCCTGCTCTTT
* * * *
937026 GAGGACTAG-GAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
124 GAGGACT-GCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * ** * **
937067 GTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGATCTTTGAAAAGCACCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* * * * * *
937132 CTTTAAGGACT-AACGG-GCGA--AA--------GG---AG-AGAGCGTCCTGCTCTTTGAGGAC
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGAGGAC
** * *
937181 TGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAG
130 TGCAAAATGCCACCAACTTGTGTAGGCTTT------GAAAG
* * *
937222 GCGTCCTGCTCTTTGAGGACTGGAATGTGCCACCAAATTGTGTAGGCTTTGCAAAGAGAAAGCAT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGT
** * * * *
937287 TTTGCTCTTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTT
59 CCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTT
* ** * * *
937351 TGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCGTTAAAAAAGAAAG
123 TGAGGACTGCAAAATGCCACCAACTTGTGTAGGC-TT-----TGAAAG
* *
937399 GCGCCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCAT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGT
* * * * *
937464 CTTGCTCTTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTT
59 CCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTT
* * * *
937528 TGAGGACTGGAAAATGCCACCAACTCGTATGGGCTTTGAAAG
123 TGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* ** * *
937570 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGGTGTCATGCT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* *
937635 CTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGTGTCCTGCTCTTT
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGC-TT---T-GAAAA-GAGTCCTGCTCTTT
* *
937700 GAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAG
124 GAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTG---AAAG
* * * * * *
937744 AAAGCATCTTGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCA
1 ---GCGTCCTGCTCTTTGAGGACTG-GAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT
* * * *
937809 GCTCTTTGAGGACTGGAAA-ATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
62 GCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGA
** * * * *
937873 GGACTGGGAAGTGCCACCAACTTTTGTGGGCTTTAAAAG
126 GGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * ** * *
937912 ACATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTTTGTGGGCTTTGAAAGGCATCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* * * * * *
937977 CTTTGAGGACT-AACGG-GCGA--AA--------GG---AG-AGAGCGTCCTGCTCTTTGAGGAG
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGAGGAC
** * * *
938026 TGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAAAAAG
130 TGCAAAATGCCACCAACTTGTGTAGGCTTT------GAAAG
* * *
938067 GCGTCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGAGCTTTGCAAAGAGAAAGCAT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGT
* * * * *
938132 CTTGCTCTTTGAGGACTGCAAA-ATGCCACCAACTTATGTAGGCTTTG-AAAGACGTCCCGCTCT
59 CCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGA-GTCCTGCTCT
* * *
938195 TTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAG
122 TTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * *
938238 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* * *
938303 CTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCCTGCTCATT
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AA--AAGA-G--TCCTGCTCTTT
* ** * *
938368 GAGGACTAG-GAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
124 GAGGACT-GCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * * *
938409 GCATCCTGCTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* * * * *
938474 CTTTGAGGACT-AAAGG-GCGA--AA--------GG---AG-AGAGCGTCCTACTCTTTGAGGAC
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGAGGAC
** * *
938523 TGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAG
130 TGCAAAATGCCACCAACTTGTGTAGGCTTT------GAAAG
* ** * *
938564 GCGTCGTGCTCTTTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGC
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT-GC
* * * * * *
938628 TCTTTAAGGACTAGAAA-ATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGCTCTTTGAGG
64 TCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGAGG
** * * * **
938692 ACTGGGAAGTGCCACCAACTTTTGTGGGCTTCAAAAG
128 ACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * * ** * *
938729 ACATCCTGCTTTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* * * * * * * *
938794 CTTTAAGGACT-AATGG-GCGA--AA--------GG---AG-AGAGCGTCTTGCTCTTTGAGGAG
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGAGGAC
** * *
938843 TGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAG
130 TGCAAAATGCCACCAACTTGTGTAGGCTTT------GAAAG
* * *
938884 ACGTCCTGCGCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCAT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTG--AA-AG---GCGT
* * * * *
938949 CTTGCTCTTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTGAAAGGCA-TCCTGCTTT
59 CCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG-AGTCCTGCTCT
* * * * *
939012 TTGAGGACTGGAAAATGCCAGCAACTCGTATGGGCTTTGAAAG
122 TTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * ** * *
939055 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCAGCAACTCATGTGGGCTTTGAAAGGTGTCATGCT
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
* *
939120 CTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGTGTCCTGCTCTTT
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGC-TT---T-GAAAA-GAGTCCTGCTCTTT
* *
939185 GAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAG
124 GAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTG--AA-AG
* * * * * * * *
939229 AAAGCATCTTGCTCTTTGAGGACTGCAAAATGCCACCAACTTATGTAGGCTTTGAAAGACGTCCC
1 ---GCGTCCTGCTCTTTGAGGACTG-GAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT
* * * *
939294 GCTCTTTGAGGACTGGAAA-ATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
62 GCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGA
* * *
939358 GGACTG-AAAGGTGCCACCAACTCGTGTGGGCTTTGAAAG
126 GGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTGAAAG
** * * *
939397 ATGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAGGAAAAGGCATC
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCGTC
* *
939462 CTGCTCATTGAGGACT-AGGAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-GCATCCTGCTCT
60 CTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAG--TCCTGCTCT
* * *
939524 TTGAGGACTG-AAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAG
122 TTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTGAAAG
* * * * * * *
939567 GTGTCCTGCTCTTTGAGGACT-AAAGGGCGA--AA--------GG---AGAGA-GCGTCCTACTC
1 GCGTCCTGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
* * *
939617 TTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCGTGCTCTTT
66 TTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-GAAAAG--A---GTCCTGCTCTTT
*
939681 GAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
124 GAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * * * *
939722 GCGT-CTAGCTCTTTAAGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTTCCTG
1 GCGTCCT-GCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG-TCCTG
* * * * * * * * * *
939786 CGCTTTTAGGAATG-GAGTTGCCACACCAACTTTTGTGGGC-TTCAAAAGACATCCGGCTAATTT
63 CTCTTTGAGGACTGAAAGGTG-C-CACCAACTTGTGTGGGCTTTGAAAAGA-GTCCTGCT-CTTT
939849 GA-GACT--AAAAGGTGGCCACCAACTTGTGTAGGCTTTGAAAG
124 GAGGACTGCAAAA--T-GCCACCAACTTGTGTAGGCTTTGAAAG
*** * * * * * **** *
939890 AG-G--CAAATC-CTGA--TC-GTAAG-G--ACTAAC--G-G-GCGAAAGGAGAGAGCGTCCTGC
1 -GCGTCCTGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAG-GCGTCCTGC
* ** * * *
939941 TCTTTGAGGAGTGGGA-GTGCCACC-ACTTGTGT-GGCTTTAAAAAAGAAAGACGTCTGCCCGTT
64 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-GAAAAG--AGTC--CTGCTC-TT
* * *
940003 TTAGGACTG-GAAGT-CCACCAACGTTGTGT-GGCTTTGCAAAG
123 TGAGGACTGCAAAATGCCACCAAC-TTGTGTAGGCTTTG-AAAG
* * * * * * *
940044 AGAAAGCTCTTGCTCTTTTGAGGACTGCAAATGCCAACCAACAGTGTGTAGGCTTTGAAAAGGCA
1 -G--CG-TCCTGCTC-TTTGAGGACTGGAAGTGCC-ACCAAC-TTGTGTGGGCTTTG-AAAGGCG
* * * * * * * * *
940109 TACCTGCTATTTGTAGGACGGAAAATGAGACACCAACTCGTGTGGGCTTTGAAAGGTGTCCTACT
58 T-CCTGCTCTTTG-AGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCT
** * * *
940174 CTTTTGAGGACTATG-AAGGTGCCACCAACTCGTGTGGGCTTTGAAAT
120 C-TTTGAGGAC--TGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* *
940221 GTGTCCTGCTCTTTGAGGCAACT-GAAGGTGACCAACTAACTTGTGTGGGCTTTGAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGG--ACTGGAA-GTG-CC-ACCAACTTGTGTGGGCTTTGAAA-G----G
* *
940285 TATGTCCCTGAGCTCTTTGAGGACTGAAAGGTG-CACTAACTTGTGTGGGCTTTGAAGGAATG-G
56 --CGT-CCT--GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA--AA-GAG
* * * ** **
940348 CATCCTGCGCATTGA-GACT--AGGAGGGCCACCAA-TTGTGGGGGC-TTGAAAAG
113 --TCCTGCTCTTTGAGGACTGCA-AAATGCCACCAACTTGTGTAGGCTTTG-AAAG
* * *
940399 GCATCCTGCCTCTTTGAGGAC-GGAAGGTG-CGCCAACTTGGTGGTGGGGCTTTTGAAAGGTGTC
1 GCGTCCTG-CTCTTTGAGGACTGGAA-GTGCCACCAACTT-GT-GT-GGGC-TTTGAAAGGCGTC
* * * * *
940462 CTGC-CTCTTGAGGACT-AAAGG-GCGA--AA--------GG---AG-AGAGCGTCCTACCTCTT
60 CTGCTCT-TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCT-GCTCTT
** * * *
940510 TGA-GACTGGGAAGTGCCACC-ACTTGTGTGGGCTTTAAAAAGAAG
123 TGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTT---GA-AAG
* * ** * * *
940554 GCGTCGTGCTCTTGGAGGACTACAAAATGGCCACACCACTTGTGTAGAGGCCTGTTTTTAAAGGC
1 GCGTCCTGCTCTTTGAGGACT-GGAAGT-GCCAC-CAACTTGTGT-G-GG-C---TTTGAAAGGC
* * * * *
940619 GT-CTAGCTC-TT-AAGACTAGAAAAG-GCCACCAACTCT-TGTGGGTTTTTG--AGGCGTCCTG
57 GTCCT-GCTCTTTGAGGACT-GAAAGGTGCCACCAACT-TGTGTGGG-CTTTGAAAAGAGTCCTG
** * * * *
940677 CGTCGTTTTGAGG-CTGGGAAGTGCCACCACCAACTTTTGTGGGCTTTCAAAAAG
118 C-TC--TTTGAGGACTGCAAAATG---CCACCAACTTGTGTAGGCTTT--GAAAG
* * ** * *
940731 GACATCCTGCTTTTTTTGAGGACTAAAAGGTGCGCACCAACTTGGTGTAGGCTTTGAAAGGCATC
1 G-CGTCCTGC--TCTTTGAGGACTGGAA-GTGC-CACCAACTT-GTGTGGGCTTTGAAAGGCGTC
* * * * *
940796 CT-CTCTTT-AGGACT-AACCGG-GCGA--AA--------GG---AG-AGAGCGTCCTGCTCTTT
60 CTGCTCTTTGAGGACTGAA-AGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTT
* ** * *
940843 GAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAG
124 GAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTT------GAAAG
* * * *
940890 ACGTCCTGCCCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAGCATC
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTG---AAAG--GCGTC
* * * * * *
940955 TTGCTCTTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCAGCTCTTT
60 CTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTT
* * *
941019 GAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAG
124 GAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * * * * *
941060 GCGTCTTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCATTAAAAGACATCCTGCT
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
*
941125 CTTTGAGGACTAAAAGGTGCCACCAACTTGTG-GGGCTTTG-AAAGCA-TCCTGCTCTTTGAGGA
65 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG-AGTCCTGCTCTTTGAGGA
*** * *
941187 CT--AACGGGCGA--AA---G-G-A------GAGA-
129 CTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
* * *
941207 GCGTCTTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTATGTGGGCTTTAAAAAAGAAAGGAGG
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTT------G-AA--AGG
* *
941272 CGTCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGGCTTTGCAAAGAGAAAGCAT
56 CGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGT-GGGCTTTG-AAA-AG--AG--T
* *
941337 CTTGCTCTTTGAGGACTGC-AAATGCCAACAAACTTGTGTAGGCTTTGAAAG
114 CCTGCTCTTTGAGGACTGCAAAATGCC-ACCAACTTGTGTAGGCTTTGAAAG
* * * * *
941388 ACGTCCCGCTCTTTGAGGACTGGAGAAAATGCCACCAACTCGTGGTGTGGCGTTGAAAGGCGTCC
1 GCGTCCTGCTCTTTGAGGACT-G-G-AAGTGCCACCAACTTGT-GTG-GGCTTTGAAAGGCGTCC
* * *
941453 TGCTCTTTGAGGACTGAAAGGTGCCACC-ACTCGTTGTGGGCTTTGAAAGGTGTCCCTGCTCTTT
61 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTG-TGTGGGCTTTGAAAAGAGT-CCTGCTCTTT
* * * * **
941517 GAGGACTG--AAAGGCCACTAACTGGTGTGGGCGTGGAAAGGAAAAG
124 GAGGACTGCAAAATGCCACCAACTTGTGTAGGC-T----TTG-AAAG
* * * ** *
941562 GCATCCTGCCTCTTTGAGGGCGGGAAGGTGGCCACC-ACTTGTGTGGGCCAGTGCAGGAA-GCAT
1 GCGTCCTG-CTCTTTGAGGACTGGAA-GT-GCCACCAACTTGTGTGGG-CTTTG-A--AAGGCGT
* * * * * *
941625 -CTGCTCTATTGAGGACGGTAAA-ATG-CACCAACTTGTGTAGGCTTTTGAAAGGCG-CC-GAGT
59 CCTGCTCT-TTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGC-TTTGAAAAGAGTCCTG-CT
* * ** *
941685 CGTTAAGGACTAG-AAAATGCCACCAACTCGTGTGGGGGTTTTTGAAAG
120 CTTTGAGGACT-GCAAAATGCCACCAACT--TGTGTAGG-CTTTGAAAG
* ** *
941733 GCGT-CTGCTCTTTGAGGACTGGGAAGTGCCACCACCACCAACTGTTGTGGGCTTCAAAAGACAG
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCA--A-C--TTG-TGTGGGCTTTGAAAGGC--
* * * * *
941797 GTCCTACTGCTTGTTTGAGGAACTAAAAGGTGGGGCCACCAACTTGTGT-AGCTTTGAAAGGCAT
57 GT-C--CTGC-TCTTTGAGG-ACTGAAAGGT---GCCACCAACTTGTGTGGGCTTTGAAAAG-AG
*** * ** **
941861 TCCTGCTCTTT-AGGACT--AACGGGGCGA--AA---G-G-A-G--AAGAGCG
113 TCCTGCTCTTTGAGGACTGCAA-AATGCCACCAACTTGTGTAGGCTTTGAAAG
* * *
941901 TCCTCCTGCTC-TTGAGGAGTGGAAGTGCCA-CAACTTGTGTGGAGGAGC-TTGAAAAAGAAAGA
1 GCGTCCTGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGT---GG-GCTTTG--AAAG---G-
* * * **
941963 TGTCCTGAGCCCTTTGAGGACTGGAAGGGTGCCACCAACTTGT-TGGATTTTGCAAAGAGAAAGC
56 CGTCCT--GCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAA-AG--AG-
*
942027 ATCTTGCTCTTTGAGGACTGCAAAAT-CCACCAACGTTGTGGTAGGCTTTGGGAAAG
113 -TCCTGCTCTTTGAGGACTGCAAAATGCCACCAAC-TTGT-GTAGGCTTT--GAAAG
* * * * * *
942083 GCAATCCTGCTCCTTTGAGGACGGGAAAATTCCACCAAAC-TCTGTGGGCTTTGAAAGGGGTCCT
1 GC-GTCCTGCT-CTTTGAGGACTGG-AAGTGCCACC-AACTTGTGTGGGCTTTGAAAGGCGTCCT
* * * *
942147 AACTCTTTGAGGACTGAAAGGTGCCA-CAACTCGTGTGGGCTTTGAAATGTGTCCTGGCTCTTTG
62 -GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCT-GCTCTTTG
* *
942211 ATGGACTG-AAAGGTGCCACTAACTTGTGGT-GGC-TTGAAAG
125 A-GGACTGCAAA-ATGCCACCAACTTGT-GTAGGCTTTGAAAG
942251 G
1 G
942252 AAAAGGCCAT
Statistics
Matches: 8274, Mismatches: 1129, Indels: 1823
0.74 0.10 0.16
Matches are distributed among these distances:
147 47 0.01
148 78 0.01
149 622 0.08
150 46 0.01
151 40 0.00
152 15 0.00
153 30 0.00
154 145 0.02
155 788 0.10
156 99 0.01
157 65 0.01
158 64 0.01
159 36 0.00
160 45 0.01
161 215 0.03
162 38 0.00
163 121 0.01
164 193 0.02
165 919 0.11
166 35 0.00
167 78 0.01
168 124 0.01
169 107 0.01
170 387 0.05
171 1672 0.20
172 96 0.01
173 106 0.01
174 128 0.02
175 106 0.01
176 236 0.03
177 1202 0.15
178 110 0.01
179 85 0.01
180 38 0.00
181 42 0.01
182 30 0.00
183 48 0.01
184 10 0.00
185 14 0.00
186 6 0.00
187 5 0.00
188 3 0.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (164 bp):
GCGTCCTGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGTCCTGCTCTTTGAGGACT
GCAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
Found at i:933763 original size:210 final size:210
Alignment explanation
Indices: 933394--933793 Score: 547
Period size: 210 Copynumber: 1.9 Consensus size: 210
933384 TTTGAAAGAT
* * * *
933394 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
1 GTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCC
** ** * *
933459 TGCTCATTGAGGACTAGGAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGA
66 TGCTCATTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTAA
* * * *
933524 GGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTAAAGG
131 GGACTGAAAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGG
933589 GCGAAAGGAGAGAGC
196 GCGAAAGGAGAGAGC
* *
933604 GTCCTACTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAA-AGAAAGGCGT
1 GTCCTACTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGA-AAAGGCAT
* * * *
933667 CGTGCTCTTTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGCTCTT
64 CCTGCTCATTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCT-GCTCTT
*
933731 TAAGGACTAGAAA-ATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGCTCTTTGAGGACT
128 TAAGGACT-GAAAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
933794 GGGAAGTGCC
Statistics
Matches: 165, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
209 3 0.02
210 155 0.94
211 7 0.04
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.26
Consensus pattern (210 bp):
GTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCC
TGCTCATTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTAA
GGACTGAAAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGG
GCGAAAGGAGAGAGC
Found at i:933999 original size:381 final size:381
Alignment explanation
Indices: 933605--939587 Score: 2469
Period size: 381 Copynumber: 15.5 Consensus size: 381
933595 GGAGAGAGCG
* * *
933605 TCCTACTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCG
1 TCCTGCTCTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAA-GCGTCT
* *
933669 TGCTCTTTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGCTCTTTA
64 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCT-GCTCTTTG
* * *
933733 AGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGGA
128 AGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAA
* * * *
933798 AGTGCCACCAACTTTTGTGGGCTTCAAAAGACATCCTGCTATTTGAGGACTAAAAGGTGCCACCA
193 AGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCA
* * * *
933863 ACTTGTGTAGGCTTTGAAAGGCATCCTGCTCTTTAAGGACT-AACGGGCGA-AA-GGAGAGAGCG
258 ACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTAAGGACTGAACGGGCCACAATGGAGAAAGCA
* * * *
933925 TCCTGCTCTTTGAGGAGTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGACG
323 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT--AAAAGAAAGGCA
* * *
933986 TCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTT
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAGAAAGCGTCTT
*
934051 GCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGCTCTTTGAG
65 GCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAG
* * *
934116 GACTGGAAAATGACACCAACTCGTGTGGGCTTTGAAAGGTGTCCTACTCTTTGAGGACT-GAAAG
130 GACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAAA-
* * * * *
934180 GTGCCACCAACTCGTGTGGGCTTTGAAATG-TGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTA
194 GTGCCACCAACTTGTGTGGGCTTT-AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCA
* * *
934244 ACTTGTGTGGGCTTTGAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTT
258 ACTTGTGTGGGCTTTGAAAGG--CA----TCCTGCTCTTTAAGGACTGAACGG-GCCAC-AA---
* *
934309 GTGTGGGCTTTGAAAGGAAAAGGCATCCTGCTCATTGAGGACT-AGGAGGTGCCACCAACTTGTG
312 ---T--G----G--A-G-AAA-GCATCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTG
934373 TGGGCTTT---A-AAAGGCA
362 TGGGCTTTAAAAGAAAGGCA
* * * * * *
934389 TCCTGCTCTTTGAGAACTGAAAGGTGCCGCCAACTTGTGTGGGCTTT----GA-AAGGTGTCCTG
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAGCGTCTTG
** * * *
934449 CTCTTTGAGGACT--AAAGGGCGA--AA---G-G-A------GAGA-GCGTCCTACTCTTTGAGG
66 CTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAGG
* * * *
934498 ACTGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCGTGCTCTTTGAGGACTA
131 ACTGGAAAATGCCACCAACTCGTGTGGGCTTT------GAAAGGCGTCCTGCTCTTTGAGGACTG
* * * * * * *
934562 CAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGCTCTTTAAGGACTAGAAA-ATGC
190 GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCT-GCTCTTTGAGGACTA-AAAGGTGC
* * * * *
934625 CACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTT
253 CACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTAAGGACT--GAACGGGCCA-CAA---
* * * *
934689 TTGTGGGCTTCAAAAGACATCCTGCTTTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTT
312 -TG-GAG-----AAAG-CATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTT
934754 T----GAAAGGCA
369 TAAAAGAAAGGCA
* * *
934763 TCCTGCTCTTTAAGGACT--AACGG-GCGA--AA--------GG-------AGAG--AGCGTCCT
1 TCCTGCTCTTTGAGGACTGGAA-GGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAGCGTCTT
* ** * * * *
934806 GCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGACGTCCTGCCC
65 GCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTT------GAAAGGCGTCCTGCTC
* * * *
934871 TTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCATCTTGCTCTTT
124 TTTGAGGACTGGAAA-ATGCCACCAACTCGTGTGGGCTTTG---AAAG---GCGTCCTGCTCTTT
* * * * * *
934935 GAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCAGCTCTTTGAGGACTGGA
182 GAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTCTTTGAGGACT--A
* * * * *
935000 AAA--TGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCTTGCTCTTTGAGGACTGGGAA-GTGCC
245 AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTAAGGACT--GAACGGGCC
* *
935062 ACCAACTTTTGTGGGCTTTAAAAGACATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGT
308 A-CAA----TG-GAG-----AAAG-CATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
935127 GTGGGCTTT----GAAAGGCA
361 GTGGGCTTTAAAAGAAAGGCA
*
935144 TCCTGCTCTTTGAGGACT--AACGG-GCGA--AA--------GG-------AGAG--AGCGTCTT
1 TCCTGCTCTTTGAGGACTGGAA-GGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAGCGTCTT
* ** * * *
935187 GCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCCTGCCC
65 GCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTT------GAAAGGCGTCCTGCTC
** * * *
935252 TTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCTTTG
124 TTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTG--AA-AG---GCGTCCTGCTCTTTG
* * * * *
935317 AGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGACGTCCCGCTCTTTGAGGACTGGAA
183 AGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTCTTTGAGGACT--AA
* * * *
935382 AA--TGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCAC
246 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTAAGGACTGAACGG-GCCA-
* ** *
935445 CAACTCGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGT
309 CAA------T-GG---AGAAA-GCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGT
*
935510 GGGCTTTGAAAGGAAAAGGCA
363 GGGCTTT-AAAAG-AAAGGCA
* ** *
935531 TCCTGCTCTTTGAGGGCTGGAAGGTGCCACCAACTTGTGTGGGCATTGCAAAGAGAAAGCATCTT
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGC-TTTAAAAGAGAAAGCGTCTT
* *
935596 GCTCTTTGAGGACTGTAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCG-CCTAGCTCTTTAA
65 GCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCT-GCTCTTTGA
* * *
935660 GGACTAGAAAATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGGAA
129 GGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAAA
* * * *
935725 GTGCCACCAACTTTTGTGGGCTTCAAAAGACATCCTGCTTTTTGAGGACTAAAAGGTGCCACCAA
194 GTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAA
** * * *
935790 CTTGTGTAAGCTTTGAAAGGCATCCTGCTCTTTAAGGACT-AACGGGCGA-AA-GGAGAGAGCGT
259 CTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTAAGGACTGAACGGGCCACAATGGAGAAAGCAT
* * ***
935852 CCTGCTCTTTGAGGAGTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGATG
324 CCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT--AAAAGAAAGGCA
* * *
935912 TCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTT
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAGAAAGCGTCTT
*
935977 GCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGCTCTTTGAG
65 GCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAG
*
936042 GACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACT-GAAAG
130 GACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAAA-
* * * * *
936106 GTGCCACCAACTCGTGTGGGCTTTGAAATG-TGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTA
194 GTGCCACCAACTTGTGTGGGCTTT-AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCA
* *
936170 ACTTGTGTGGGCTTTGAAAGGAAAAGGCATCCTGCTCATTGAA-GACTAGGA-GGTGCCACCAAC
258 ACTTGTGTGGGCTTT-----G-AAAGGCATCCTGCTC-TTTAAGGACT-GAACGG-GCCA-CAA-
* *
936233 TTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGC
312 ---TG-GAG-----AAA-GCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGC
936298 TTTAAAAG---GTG--
367 TTTAAAAGAAAG-GCA
* * * *
936309 TCCTGCTCTTTGAGGACT-AAAGG-GCGA--AA--------GG-------AGAG--AGCGTCCTA
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAGCGTCTTG
** * * *
936353 CTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAACAAGAAAGGCGTCGTGCTCT
66 CTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTT------GAAAGGCGTCCTGCTCT
** * * *
936418 TTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGCTCTTTAAGGACT
125 TTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCT-GCTCTTTGAGGACT
* * * * * * **
936482 AGAAAATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGGAA-GTGC
189 GGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTCTTTGAGGACT-AAAAGGTGC
* ** * * * *
936546 CACCAACTTTTGTGGGCTTCAAAAGACATCCTGCT-TTTGAGGACTAAAAGGTGCCACCAACTTG
253 CACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTAAGGACTGAACGG-GCCA-CAA--TG
* * *
936610 TGTAGGCTTTGAAAGGCATCCTGCTCTTTAAGGACT-AACGG-GCGA--AA--------GG----
314 -G-A------GAAA-GCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* *
936659 ---AGAGA-GCG
370 AAAAGAAAGGCA
* * *
936667 TCCTGCTCTTTGAGGAGTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGACGTCC
1 TCCTGCTCTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAG-CGTCT
* * ** * * *
936731 TGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCT
64 TGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTG--AA-AG---GCGTCCTGCT
* * * *
936796 CTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGCTCTTTGAGGAC
123 CTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
* * * * ** * *
936861 TGGAAAATGACACCAACTCGTGTGGGCTTTGAAAGGTGTCCTACTCTTTGAGGACTGAAAGGTGC
188 TGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGC
* * ** * *
936926 CACCAACTCGTGTGGGCTTTGAAATGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTG
253 CACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTAAGGACTGAACGG-GCCAC-AA----
** *
936991 TGTGGGCTTTGAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGT
312 --T--G----G--A-G-AAA-GCATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGT
937055 GGGCTTTAAAAG---GTG--
363 GGGCTTTAAAAGAAAG-GCA
* ** ** *
937070 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGATCTTT----GA-AAAGCACCCTG
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAGCGTCTTG
* *** * *
937130 CTCTTTAAGGACT--AACGGGCGA--AA---G-G-A------GAGA-GCGTCCTGCTCTTTGAGG
66 CTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAGG
* * *
937179 ACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCCTGCTCTTTGAGGACTG
131 ACTGGAAAATGCCACCAACTCGTGTGGGCTTT------GAAAGGCGTCCTGCTCTTTGAGGACTG
* * * * **
937244 GAATGTGCCACCAAATTGTGTAGGCTTTGCAAAGAGAAAGCATTTTGCTCTTTGAGGACTGCAAA
190 GAAAGTGCCACCAACTTGTGTGGGCTTT--AAA-AG--A-CGTCCTGCTCTTTGAGGACT--AAA
* * * * *
937309 A--TGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAGTGGGAA-GTGCCAC
247 AGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTAAGGACT--GAACGGGCCA-
** *
937371 CAACTTGTGTGGGCGTTAAAAAAGAAAGGCGCCCTGCTCTTTGAGGACTGGAAGGTGCCACCAAC
309 CAA------T--G-G-------AGAAA-GCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAC
937436 TTGTGTGGGCTTTGCAAAGAGAAA-GCA
357 TTGTGTGGGCTTT--AAA-AGAAAGGCA
* * ** * * *
937463 TCTTGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTT----GA-AAGGCGTCCTG
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAGCGTCTTG
* * * *
937523 CTCTTTGAGGACTGGAAAATGCCACCAACTCGTATGGGCTTTGAAAGGCGTCCTGCTCTTTGAGG
66 CTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAGG
* * * *
937588 ACT-GAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGGTGTCATGCTCTTTGAGGACT-GAAAG
131 ACTGGAAA-ATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAAA-
* ** *
937651 GTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGC
194 GTGCCACCAACTTGTGTGGGC-TT---T--AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGC
* * ***
937716 CACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCATCTTGCTCTTTGAGGACTGCAAAATGCCACC
253 CACCAACTTGTGTGGGCTTTG---AAAG---GCATCCTGCTCTTTAAGGACTG-AACGGGCCA-C
* * * *
937781 AACTTGTGTAGGCTTTGAAAGGCGTCCAGCTCTTTGAGGACTGGAAA-ATGCCACCAACTCGTGT
310 AA--TG-G-A------GAAA-GCATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGT
*
937845 GGGCTTT----GAAAGGCG
363 GGGCTTTAAAAGAAAGGCA
* * *
937860 TCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTTTGTGGGCTTT-AAA-AG--A-CATCCT
1 TCCTGCTCTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAGCGTCTT
* * *
937919 GCTCTTTGAGGACT--AAAAGGTGCCACCAACTTTTGTGGGCTTTGAAAGGCATCCTGCTCTTTG
65 GCTCTTTGAGGACTGCAAAA--TGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTG
*** * * * * *
937982 AGGACT--AACGGGCGA--AA--------GG---AGAGA-GCGTCCTGCTCTTTGAGGAGTGGGA
128 AGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAA
* * **
938031 AGTGCCACCAACTTGTGTGGGCTTTAAAAAAAAAAGGCGTCCTGCCCTTTGAGGACTGGAAGGTG
193 AGTGCCACCAACTTGTGTGGGCTTT------AAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTG
* * * ***
938096 CCACCAACTTGTGTGAGCTTTGCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGCAAAATGCCAC
252 CCACCAACTTGTGTGGGCTTTG--AA-AG---GCATCCTGCTCTTTAAGGACTG-AACGGGCCA-
* * * * *
938161 CAACTTATGTAGGCTTTGAAAGACGTCCCGCTCTTTGAGGACTGGAAA-ATGCCACCAACTCGTG
309 C-A---A--T-GG---AGAAAG-CATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTG
*
938225 TGGGCTTT----GAAAGGCG
362 TGGGCTTTAAAAGAAAGGCA
* * * * *
938241 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTT----GA-AAGGTGTCCTG
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAGCGTCTTG
* * * *
938301 CTCTTTGAGGACTG-AAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCCTGCTC
66 CTCTTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTT-----G-AAAGGCGTCCTGCTC
* ** * * *
938365 ATTGAGGACTAGG-AGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGAC
124 TTTGAGGACT-GGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
* * **
938429 T-GAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT-AAAGG-G
188 TGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTG
* * * * * * *
938491 CGA--AA--------GG---AGAGA-GCGTCCTACTCTTTGAGGACTGGGAA-GTGCCACCAACT
252 CCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTAAGGACT--GAACGGGCCA-CAA--
* * **
938541 TGTGTGGGCTTTAAAAAAGAAAGGCGTCGTGCTCTTTGAGGACT-ACAAAATGCCACCAACTTGT
312 ----T-GG---------AGAAA-GCATCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGT
* *
938605 GTAGGCTTT----GAAAGGCG
361 GTGGGCTTTAAAAGAAAGGCA
* * ** * * * *
938622 T-CTAGCTCTTTAAGGACTAGAAAATGCCACCAACTCGTGTGGG-TTT---TGA-AAGGCGTCCT
1 TCCT-GCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAGCGTCTT
** * * * ** * * *
938681 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCTTCAAAAGACATCCTGCTTTTTGAG
65 GCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAG
* * * *
938746 GACT--AAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGCTCTTTAAGGACT--AA
130 GACTGGAAAA--TGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAA
* * * * * * * **
938807 TGGGCGA--AA-----G-GAG-----AGAG-CGTCTTGCTCTTTGAGGAGTGGGAA-GTGCCACC
193 AGTGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTCTTTGAGGACT-AAAAGGTGCCACC
* * * *
938857 AACTTGTGTGGGCTTTAAAAAAGAAAGACGTCCTGCGCTTTGAGGACTGGAA-GGTGCCACCAAC
257 AACTTGTGTGGGCTTT------GAAAGGCATCCTGCTCTTTAAGGACT-GAACGG-GCCA-CAA-
* *
938921 TTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGCAAA-ATGCCACCAACTTG
312 ------------TG----GAGAAAGCATCCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTG
*
938985 TGTAGGCTTT----GAAAGGCA
360 TGTGGGCTTTAAAAGAAAGGCA
* ** * * * * *
939003 TCCTGCTTTTTGAGGACTGGAAAATGCCAGCAACTCGTATGGGCTTT----GA-AAGGCGTCCTG
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAGCGTCTTG
* * ** * * *
939063 CTCTTTGAGGACTG-AAAGGTGCCAGCAACTCATGTGGGCTTTGAAAGGTGTCATGCTCTTTGAG
66 CTCTTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAG
* * * *
939127 GACT-GAAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAAGGTGTCCTGCTCTTTGAGGAC
130 GACTGGAAA-ATGCCACCAACTCGTGTGGGC-TT---T-G-AAAGGCGTCCTGCTCTTTGAGGAC
* *
939191 T-GAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAAGCATCTTGCTCTTTGAGGACTGC
188 TGGAAA-GTGCCACCAACTTGTGTGGGCTTT--AAA-AG--A-CGTCCTGCTCTTTGAGGACT--
* * * * * * ***
939255 AAAA--TGCCACCAACTTATGTAGGCTTTGAAAGACGTCCCGCTCTTTGAGGACTGGAAAATGCC
244 AAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTAAGGACT-GAACGGGCC
* * *
939318 ACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGT
308 A-CAA------T-GG---AGAAA-GCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
* *
939383 GTGGGCTTTGAAAG--ATG--
361 GTGGGCTTTAAAAGAAAGGCA
* * * * * *
939400 TCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAGGA-AAAGGCATCCT
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAA-GCGTCTT
* * ** * * *
939464 GCTCATTGAGGACTAG-GAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGA
65 GCTCTTTGAGGACT-GCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGA
* * * *
939528 GGACT-GAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT
129 GGACTGGAAA-ATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
939588 AAAGGGCGAA
Statistics
Matches: 4555, Mismatches: 558, Indels: 963
0.75 0.09 0.16
Matches are distributed among these distances:
355 2 0.00
356 1 0.00
358 36 0.01
359 20 0.00
360 15 0.00
361 5 0.00
362 8 0.00
363 2 0.00
365 3 0.00
366 2 0.00
370 7 0.00
371 5 0.00
372 10 0.00
373 17 0.00
374 113 0.02
375 201 0.04
376 5 0.00
377 11 0.00
378 6 0.00
379 17 0.00
380 311 0.07
381 1893 0.42
382 84 0.02
383 9 0.00
384 4 0.00
385 17 0.00
386 96 0.02
387 259 0.06
388 21 0.00
389 39 0.01
390 6 0.00
391 15 0.00
393 75 0.02
395 38 0.01
396 54 0.01
397 377 0.08
398 11 0.00
399 10 0.00
400 4 0.00
401 17 0.00
402 105 0.02
403 383 0.08
404 8 0.00
405 4 0.00
406 9 0.00
407 11 0.00
408 11 0.00
409 196 0.04
410 2 0.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (381 bp):
TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAGCGTCTTG
CTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAGG
ACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAAAGT
GCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACT
TGTGTGGGCTTTGAAAGGCATCCTGCTCTTTAAGGACTGAACGGGCCACAATGGAGAAAGCATCC
TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCA
Found at i:934142 original size:116 final size:112
Alignment explanation
Indices: 933920--934461 Score: 542
Period size: 116 Copynumber: 4.7 Consensus size: 112
933910 CGAAAGGAGA
* * * *
933920 GAGCGTCCTGCTCTTTGAGGAGTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGA
1 GAGCATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT------GAAAGG
* * *
933984 CGTCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAG
59 CATCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAG
* * *
934039 AGAAAGCATCTTGCTCTTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTGAAAGGCAT
1 -G--AGCATCCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCAT
* * *
934103 CCTGCTCTTTGAGGACTGGAAAATGACACCAACTCGTGTGGGCTTTGAAAG
62 CCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
* * * * **
934154 GTG--TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAATGTGTCCTG
1 GAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTG
*
934217 CTCTTTGAGGACT-GAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAG
66 CTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAG
** *
934264 GAAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAA
1 G---A-GCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-----G-AA
* * *
934329 AGGCATCCTGCTCATTGAGGACTAGG-AGGTGCCACCAACTTGTGTGGGCTTT-AAAA
56 AGGCATCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
* * **
934385 G-GCATCCTGCTCTTTGAGAACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCCTG
1 GAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTG
934449 CTCTTTGAGGACT
66 CTCTTTGAGGACT
934462 AAAGGGCGAA
Statistics
Matches: 358, Mismatches: 45, Indels: 48
0.79 0.10 0.11
Matches are distributed among these distances:
109 7 0.02
110 109 0.30
111 1 0.00
112 1 0.00
114 2 0.01
115 4 0.01
116 138 0.39
120 1 0.00
121 6 0.02
122 87 0.24
123 1 0.00
124 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (112 bp):
GAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTG
CTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:934177 original size:26 final size:26
Alignment explanation
Indices: 934148--934237 Score: 76
Period size: 26 Copynumber: 3.3 Consensus size: 26
934138 GTGTGGGCTT
934148 TGAAAGGTGTCCTACTCTTTGAGGAC
1 TGAAAGGTGTCCTACTCTTTGAGGAC
* * *
934174 TGAAAGGTGCCACCAACTCGTGTG-GG-C
1 TGAAAGGTG--TCCTACTC-TTTGAGGAC
* *
934201 TTTGAAATGTGTCCTGCTCTTTGAGGAC
1 --TGAAAGGTGTCCTACTCTTTGAGGAC
934229 TGAAAGGTG
1 TGAAAGGTG
934238 CCACTAACTT
Statistics
Matches: 48, Mismatches: 9, Indels: 14
0.68 0.13 0.20
Matches are distributed among these distances:
26 20 0.42
27 8 0.17
28 9 0.19
29 11 0.23
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (26 bp):
TGAAAGGTGTCCTACTCTTTGAGGAC
Found at i:934640 original size:209 final size:210
Alignment explanation
Indices: 934272--934670 Score: 545
Period size: 209 Copynumber: 1.9 Consensus size: 210
934262 AGGAAAAGGT
* * * *
934272 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
1 GTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCC
** ** * *
934337 TGCTCATTGAGGACTAGGAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGA
66 TGCTCATTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTAA
* * * *
934402 GAACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTAAAGG
131 GAACTGAAAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGG
934467 GCGAAAGGAGAGAGC
196 GCGAAAGGAGAGAGC
* *
934482 GTCCTACTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAA-AGAAAGGCGTC
1 GTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGA-AAAGGCATC
* * * *
934545 GTGCTCTTTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGCTCTTT
65 CTGCTCATTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCT-GCTCTTT
* *
934609 AAGGACTAGAAA-ATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGCTCTTTGAGGACT
129 AAGAACT-GAAAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
934671 GGGAAGTGCC
Statistics
Matches: 164, Mismatches: 22, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
208 3 0.02
209 136 0.83
210 25 0.15
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (210 bp):
GTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCC
TGCTCATTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTAA
GAACTGAAAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGG
GCGAAAGGAGAGAGC
Found at i:935495 original size:26 final size:26
Alignment explanation
Indices: 935406--935495 Score: 76
Period size: 26 Copynumber: 3.3 Consensus size: 26
935396 GTGTGGGCTT
*
935406 TGAAAGGCGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTGCTCTTTGAGGAC
* ** *
935432 TGAAAGGTGCCACCAACTCGTGTG-GG-C
1 TGAAAGGTG--TCCTGCTC-TTTGAGGAC
935459 TTTGAAAGGTGTCCTGCTCTTTGAGGAC
1 --TGAAAGGTGTCCTGCTCTTTGAGGAC
935487 TGAAAGGTG
1 TGAAAGGTG
935496 CCACTAACTT
Statistics
Matches: 48, Mismatches: 9, Indels: 14
0.68 0.13 0.20
Matches are distributed among these distances:
26 20 0.42
27 8 0.17
28 8 0.17
29 12 0.25
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.27
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGAGGAC
Found at i:936445 original size:155 final size:149
Alignment explanation
Indices: 936199--936780 Score: 569
Period size: 155 Copynumber: 3.7 Consensus size: 149
936189 GGAAAAGGCA
* * * * *
936199 TCCTGCTCATTGAAGACTAGGAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGCATCCTGCTCT
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTCAAAAGACATCCTGCTCT
* * * * * *
936263 TTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTA
66 TTGAGGACT-AAAAGTGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTAAGGACTA
936328 AAGGGCGAAAGGAGAGAGCG
130 AAGGGCGAAAGGAGAGAGCG
* * * *
936348 TCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAACAAGAAAGGCGTCGT
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT---C-A-AAAGACATCCT
*
936413 GCTCTTTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGCTCTTTAA
61 GCTCTTTGAGGACTA-AAAGTGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCT-GCTCTTTAA
** * * *
936477 GGACTAGAAAATGCCACCAACTCGTGTGGGTTTTGAAAGGCG
124 GGACT--AAAGGGCGA--AA--------GG---AGAGA-GCG
*
936519 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGC-TTCAAAAGACATCCTGCT-T
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTCAAAAGACATCCTGCTCT
*
936582 TTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGCTCTTTAAGGACTA
66 TTGAGGACTAAAA-GTGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTAAGGACTA
*
936647 ACGGGCGAAAGGAGAGAGCG
130 AAGGGCGAAAGGAGAGAGCG
* * *
936667 TCCTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGACGTCCT
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT----CA-AAAGACATCCT
* * * *
936732 GCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAG
61 GCTCTTTGAGGACT-AAAAGTGCCACCAACTTGTGTAGGCTTTG-AAAG
936781 AGAAAGCATC
Statistics
Matches: 358, Mismatches: 40, Indels: 63
0.78 0.09 0.14
Matches are distributed among these distances:
148 45 0.13
149 47 0.13
152 2 0.01
153 1 0.00
154 16 0.04
155 100 0.28
156 6 0.02
157 6 0.02
159 2 0.01
160 2 0.01
162 5 0.01
163 3 0.01
164 56 0.16
165 13 0.04
166 1 0.00
167 3 0.01
170 5 0.01
171 45 0.13
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (149 bp):
TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTCAAAAGACATCCTGCTCT
TTGAGGACTAAAAGTGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTAAGGACTAA
AGGGCGAAAGGAGAGAGCG
Found at i:936884 original size:116 final size:111
Alignment explanation
Indices: 936666--937987 Score: 950
Period size: 116 Copynumber: 11.7 Consensus size: 111
936656 AGGAGAGAGC
* * **
936666 GTCCTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGACGTCC
1 GTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT------GAAAGGTGTCC
* *
936731 TGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAA
59 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-GAAA
* * * **
936786 GCATCTTGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGCT
1 G--TCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCT
* * * *
936851 CTTTGAGGACTGGAAA-ATGACACCAACTCGTGTGGGCTTTGAAAGG--T
63 CTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAA
* * *
936898 GTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAATGTGTCCTGCTCT
1 GTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCT
*
936963 TTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAA
65 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG-AAA
* *
937011 GGTGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGC
1 ---GTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGC
** * *
937076 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGATCTTTGAAAAG-CA
62 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAA
* * * * * * * * * ***
937125 -CCCTGCTCTTTAAGGACT-AACGGGCGA--AA--GGAGAGAGC---G--TCCTG--CT-CT-TT
1 GTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
* **** * * * ** ** ** *
937175 GAG-GACTGGGAAGTG-CCAC-CAACTTGTGTG-GGCTTTAAAAAAGAAA
66 -TGAGGACTGAAAG-GTGC-CACCAACT-TGTGTGGGCTTTGAAAGGAAA
* * * *
937221 GGCGTCCTGCTCTTTGAGGACTGGAATGTGCCACCAAATTGTGTAGGCTTTGCAAAGAGAAAGCA
1 ---GTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAG-G--TG--
** * * *
937286 TTTTGCTCTTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTGAAAGG--C
56 TCCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAA
* * * * *
937340 GTCCTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCGTTAAAAAAGAAAGGCGCCC
1 GTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGC-TT-----TGAAAGGTGTCC
*
937405 TGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAA
59 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-GAAA
* * * *
937460 GCATCTTGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCT
1 G--TCCTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCT
* * * *
937525 CTTTGAGGACTGGAAA-ATGCCACCAACTCGTATGGGCTTTGAAAGG--C
63 CTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAA
** *
937572 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCATGTGGGCTTTGAAAGGTGTCATGCTCT
1 GTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCT
* *
937637 TTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAATGGAAAA
65 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG-AAA
**
937685 GGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCA
1 ---GTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTG---AAAG---GTG
* * * *
937750 TCTTGCTCTTTGAGGACTGCAAA-ATGCCACCAACTTGTGTAGGCTTTGAAAGG--C
56 TCCTGCTCTTTGAGGACTG-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAA
* * * *
937804 GTCCAGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCT
1 GTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCT
* * * *
937869 TTGAGGACTGGGAA-GTGCCACCAACTTTTGTGGGCTTT-AAAAGACA
65 TTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAA
* * **
937915 -TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTTTGTGGGCTTTGAAAGGCATCCTGCTCT
1 GTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCT
937979 TTGAGGACT
65 TTGAGGACT
937988 AACGGGCGAA
Statistics
Matches: 954, Mismatches: 165, Indels: 176
0.74 0.13 0.14
Matches are distributed among these distances:
95 19 0.02
96 10 0.01
97 2 0.00
99 2 0.00
100 16 0.02
102 6 0.01
104 7 0.01
106 6 0.01
108 5 0.01
109 22 0.02
110 295 0.31
111 1 0.00
112 2 0.00
113 4 0.00
114 3 0.00
115 11 0.01
116 355 0.37
117 19 0.02
118 2 0.00
119 5 0.01
120 11 0.01
121 23 0.02
122 125 0.13
123 3 0.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (111 bp):
GTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAA
Found at i:936919 original size:26 final size:26
Alignment explanation
Indices: 936890--936979 Score: 76
Period size: 26 Copynumber: 3.3 Consensus size: 26
936880 GTGTGGGCTT
936890 TGAAAGGTGTCCTACTCTTTGAGGAC
1 TGAAAGGTGTCCTACTCTTTGAGGAC
* * *
936916 TGAAAGGTGCCACCAACTCGTGTG-GG-C
1 TGAAAGGTG--TCCTACTC-TTTGAGGAC
* *
936943 TTTGAAATGTGTCCTGCTCTTTGAGGAC
1 --TGAAAGGTGTCCTACTCTTTGAGGAC
936971 TGAAAGGTG
1 TGAAAGGTG
936980 CCACTAACTT
Statistics
Matches: 48, Mismatches: 9, Indels: 14
0.68 0.13 0.20
Matches are distributed among these distances:
26 20 0.42
27 8 0.17
28 9 0.19
29 11 0.23
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (26 bp):
TGAAAGGTGTCCTACTCTTTGAGGAC
Found at i:938321 original size:26 final size:26
Alignment explanation
Indices: 938232--938321 Score: 76
Period size: 26 Copynumber: 3.3 Consensus size: 26
938222 GTGTGGGCTT
*
938232 TGAAAGGCGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTGCTCTTTGAGGAC
* ** *
938258 TGAAAGGTGCCACCAACTCGTGTG-GG-C
1 TGAAAGGTG--TCCTGCTC-TTTGAGGAC
938285 TTTGAAAGGTGTCCTGCTCTTTGAGGAC
1 --TGAAAGGTGTCCTGCTCTTTGAGGAC
938313 TGAAAGGTG
1 TGAAAGGTG
938322 CCACTAACTT
Statistics
Matches: 48, Mismatches: 9, Indels: 14
0.68 0.13 0.20
Matches are distributed among these distances:
26 20 0.42
27 8 0.17
28 8 0.17
29 12 0.25
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.27
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGAGGAC
Found at i:938664 original size:210 final size:210
Alignment explanation
Indices: 938295--938694 Score: 547
Period size: 210 Copynumber: 1.9 Consensus size: 210
938285 TTTGAAAGGT
* * * *
938295 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAGGAAAAGGCATCC
1 GTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCC
** ** * *
938360 TGCTCATTGAGGACTAGGAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGA
66 TGCTCATTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTAA
* * * *
938425 GGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTAAAGG
131 GGACTGAAAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGG
938490 GCGAAAGGAGAGAGC
196 GCGAAAGGAGAGAGC
* *
938505 GTCCTACTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAA-AGAAAGGCGT
1 GTCCTACTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGA-AAAGGCAT
* * * *
938568 CGTGCTCTTTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGCTCTT
64 CCTGCTCATTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCT-GCTCTT
*
938632 TAAGGACTAGAAA-ATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGCTCTTTGAGGACT
128 TAAGGACT-GAAAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
938695 GGGAAGTGCC
Statistics
Matches: 165, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
209 3 0.02
210 155 0.94
211 7 0.04
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.26
Consensus pattern (210 bp):
GTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCC
TGCTCATTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTAA
GGACTGAAAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGG
GCGAAAGGAGAGAGC
Found at i:939138 original size:26 final size:26
Alignment explanation
Indices: 939049--939138 Score: 74
Period size: 26 Copynumber: 3.3 Consensus size: 26
939039 GTATGGGCTT
* *
939049 TGAAAGGCGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCATGCTCTTTGAGGAC
* * * * *
939075 TGAAAGGTGCCA-GCAACTCATGTGGGC
1 TGAAAGGTGTCATGC-TCT-TTGAGGAC
939102 TTTGAAAGGTGTCATGCTCTTTGAGGAC
1 --TGAAAGGTGTCATGCTCTTTGAGGAC
939130 TGAAAGGTG
1 TGAAAGGTG
939139 CCACTAACTT
Statistics
Matches: 47, Mismatches: 12, Indels: 10
0.68 0.17 0.14
Matches are distributed among these distances:
25 2 0.04
26 20 0.43
27 5 0.11
28 5 0.11
29 13 0.28
30 2 0.04
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (26 bp):
TGAAAGGTGTCATGCTCTTTGAGGAC
Found at i:939701 original size:61 final size:55
Alignment explanation
Indices: 939606--939780 Score: 192
Period size: 55 Copynumber: 3.1 Consensus size: 55
939596 AAAGGAGAGA
* * *
939606 GCGTCCTA-CTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAG
1 GCGT-CTAGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT------GAAAG
* *
939667 GCGTCGT-GCTCTTTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAG
1 GCGTC-TAGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
* * *
939722 GCGTCTAGCTCTTTAAGGACTAGAAAATGCCACCAACTCGTGTGGGTTTTGAAAG
1 GCGTCTAGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
939777 GCGT
1 GCGT
939781 TCCTGCGCTT
Statistics
Matches: 101, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
54 1 0.01
55 57 0.56
60 1 0.01
61 42 0.42
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (55 bp):
GCGTCTAGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:939733 original size:155 final size:149
Alignment explanation
Indices: 939460--939743 Score: 374
Period size: 155 Copynumber: 1.9 Consensus size: 149
939450 GGAAAAGGCA
* *
939460 TCCTGCTCATTGAGGACTAGGAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTT
1 TCCTACTCATTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTT
** * * * *
939525 TGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTAA
66 TGAGGACTGAAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTAAGGACTAA
939590 AGGGCGAAAGGAGAGAGCG
131 AGGGCGAAAGGAGAGAGCG
* * * *
939609 TCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTCGT
1 TCCTACTCATTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTT-----A-AAAGGCATCCT
939674 GCTCTTTGAGGACT-ACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGCTCTTTA
60 GCTCTTTGAGGACTGA-AAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCT-GCTCTTTA
939737 AGGACTA
123 AGGACTA
939744 GAAAATGCCA
Statistics
Matches: 115, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
149 43 0.37
154 4 0.03
155 68 0.59
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (149 bp):
TCCTACTCATTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTT
TGAGGACTGAAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTAAGGACTAA
AGGGCGAAAGGAGAGAGCG
Found at i:939767 original size:210 final size:210
Alignment explanation
Indices: 939399--939796 Score: 516
Period size: 210 Copynumber: 1.9 Consensus size: 210
939389 TTTGAAAGAT
* * * **
939399 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAGGAAAAGGCATCCT
1 GTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAAAAAGGCATCCT
** ** * *
939464 GCTCATTGAGGACTAGGAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAG
66 GCTCATTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTAAG
* * * * *
939529 GACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGTG-TCCTGCTCTTTGAGGACTAAAGG
131 GACTGAAAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTTCCTGCGCTTTGAGGACTAAAGG
939593 GCGAAAGGAGAGAGC
196 GCGAAAGGAGAGAGC
* *
939608 GTCCTACTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGGCGTC
1 GTCCTACTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAA-AAAGGCATC
* * * *
939672 GTGCTCTTTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTGAAAGGCGT-CTAGCTCTTT
64 CTGCTCATTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCT-GCTCTTT
* *
939736 AAGGACTAGAAA-ATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTTCCTGCGCTTTTAGGA
128 AAGGACT-GAAAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTTCCTGCGCTTTGAGGA
939797 ATGGAGTTGC
Statistics
Matches: 160, Mismatches: 24, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
209 46 0.29
210 96 0.60
211 18 0.11
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.26
Consensus pattern (210 bp):
GTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAAAAAGGCATCCT
GCTCATTGAGGACTACAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTAAG
GACTGAAAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTTCCTGCGCTTTGAGGACTAAAGG
GCGAAAGGAGAGAGC
Found at i:940068 original size:59 final size:61
Alignment explanation
Indices: 939937--940105 Score: 167
Period size: 59 Copynumber: 2.8 Consensus size: 61
939927 AGAGAGCGTC
* * *
939937 CTGCTC-TTTGAGGAGTGGGAGTGCCACC-AC-TTGTGTGGCTTT-AAAAAAGAAAGACGT
1 CTGCTCTTTTGAGGACTGGAAGTGCCACCAACGTTGTGTGGCTTTGAAAAGAGAAAGACGT
* *
939994 CTGCCCGTTTT-AGGACTGGAAGT-CCACCAACGTTGTGTGGCTTTGCAAAGAGAAAG-C-T
1 CTGCTC-TTTTGAGGACTGGAAGTGCCACCAACGTTGTGTGGCTTTGAAAAGAGAAAGACGT
* *
940052 CTTGCTCTTTTGAGGACTGCAAATGCCAACCAACAG-TGTGTAGGCTTTGAAAAG
1 C-TGCTCTTTTGAGGACTGGAAGTGCC-ACCAAC-GTTGTGT-GGCTTTGAAAAG
940106 GCATACCTGC
Statistics
Matches: 92, Mismatches: 9, Indels: 17
0.78 0.08 0.14
Matches are distributed among these distances:
57 10 0.11
58 18 0.20
59 30 0.33
60 11 0.12
61 11 0.12
62 12 0.13
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (61 bp):
CTGCTCTTTTGAGGACTGGAAGTGCCACCAACGTTGTGTGGCTTTGAAAAGAGAAAGACGT
Found at i:940218 original size:28 final size:27
Alignment explanation
Indices: 940139--940218 Score: 72
Period size: 28 Copynumber: 2.9 Consensus size: 27
940129 GAAAATGAGA
940139 CACCAACTCGTGTGGGCTTTGAAAGGTG
1 CACCAACTCGTGTGGGCTTTG-AAGGTG
* * * * *
940167 -TCCTACTCTTTTGAGGACTATGAAGGTG
1 CACCAACTCGTGTG-GG-CTTTGAAGGTG
940195 CCACCAACTCGTGTGGGCTTTGAA
1 -CACCAACTCGTGTGGGCTTTGAA
940219 ATGTGTCCTG
Statistics
Matches: 38, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
27 9 0.24
28 14 0.37
29 6 0.16
30 9 0.24
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.29
Consensus pattern (27 bp):
CACCAACTCGTGTGGGCTTTGAAGGTG
Found at i:940277 original size:58 final size:57
Alignment explanation
Indices: 940139--940279 Score: 196
Period size: 57 Copynumber: 2.5 Consensus size: 57
940129 GAAAATGAGA
*
940139 CACCAACTCGTGTGGGCTTTGAAAGGTGTCCTACTCTTTTGAGGACTATGAAGGTGC
1 CACCAACTCGTGTGGGCTTTGAAAGGTGTCCTACTCTTTTGAGGACAATGAAGGTGC
* *
940196 CACCAACTCGTGTGGGCTTTGAAATGTGTCCTGCTC-TTTGAGG-CAACTGAAGGTGAC
1 CACCAACTCGTGTGGGCTTTGAAAGGTGTCCTACTCTTTTGAGGACAA-TGAAGGTG-C
* *
940253 CAACTAACTTGTGTGGGCTTTGAAAGG
1 C-ACCAACTCGTGTGGGCTTTGAAAGG
940280 AAAAGTATGT
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
55 2 0.03
56 15 0.20
57 36 0.48
58 22 0.29
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (57 bp):
CACCAACTCGTGTGGGCTTTGAAAGGTGTCCTACTCTTTTGAGGACAATGAAGGTGC
Found at i:940925 original size:61 final size:56
Alignment explanation
Indices: 940830--941188 Score: 374
Period size: 55 Copynumber: 6.4 Consensus size: 56
940820 AAGGAGAGAG
* *
940830 CGTCCTGCTCTTTGAGGAGTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAAGAAAGA
1 CGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-----AGAAAGA
* *
940891 CGTCCTGCCCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAA
1 CGTCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTT--AGAAAG-A
* * * * * *
940950 GCATCTTGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTAGGCTTT-GAAAGG
1 -CGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGA
* * * *
941006 CGTCCAGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTT-GAAAGG
1 CGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGA
* * * *
941061 CGTCTTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTTTGTGGGCATTA-AAAGA
1 CGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGA
* *
941116 CATCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAACTTGTG-GGGCTTT-GAAAG-
1 CGTCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAGAAAGA
*
941169 CATCCTGCTCTTTGAGGACT
1 CGTCCTGCTCTTTGAGGACT
941189 AACGGGCGAA
Statistics
Matches: 257, Mismatches: 34, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
53 20 0.08
54 12 0.05
55 128 0.50
57 4 0.02
58 5 0.02
59 1 0.00
60 42 0.16
61 45 0.18
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (56 bp):
CGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGA
Found at i:941458 original size:59 final size:57
Alignment explanation
Indices: 941339--941524 Score: 193
Period size: 59 Copynumber: 3.3 Consensus size: 57
941329 GAAAGCATCT
* * ** * *
941339 TGCTCTTTGAGGACT-G-CAAATGCCAACAAAC-TTGTGTAGGCTTTGAAAGACGTCC
1 TGCTCTTTGAGGACTGGAAAAATGCCACCACTCGTGGTGT-GGCTTTGAAAGGCGTCC
* *
941394 CGCTCTTTGAGGACTGGAGAAAATGCCACCAACTCGTGGTGTGGCGTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTGGA-AAAATGCCACC-ACTCGTGGTGTGGCTTTGAAAGGCGTCC
** * *
941453 TGCTCTTTGAGGACT-GAAAGGTGCCACCACTCGTTGTG-GGCTTTGAAAGGTGTCCC
1 TGCTCTTTGAGGACTGGAAAAATGCCACCACTCGTGGTGTGGCTTTGAAAGGCGT-CC
941509 TGCTCTTTGAGGACTG
1 TGCTCTTTGAGGACTG
941525 AAAGGCCACT
Statistics
Matches: 110, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
55 27 0.25
56 27 0.25
57 9 0.08
58 11 0.10
59 31 0.28
60 5 0.05
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (57 bp):
TGCTCTTTGAGGACTGGAAAAATGCCACCACTCGTGGTGTGGCTTTGAAAGGCGTCC
Found at i:941515 original size:56 final size:56
Alignment explanation
Indices: 941339--941529 Score: 203
Period size: 56 Copynumber: 3.4 Consensus size: 56
941329 GAAAGCATCT
* * * *
941339 TGCTCTTTGAGGACTGCAAA--TGCCAACAAACTTG-TGTAGGCTTTGAAAGACGTCCC
1 TGCTCTTTGAGGACTG-AAAGGTGCC-AC-CACTCGTTGTGGGCTTTGAAAGGCGTCCC
** * *
941395 -GCTCTTTGAGGACTGGAGAAAATGCCACCAACTCGTGGTGTGGCGTTGAAAGGCGT-CC
1 TGCTCTTTGAGGACT-GA-AAGGTGCCACC-ACTCGTTGTG-GGCTTTGAAAGGCGTCCC
*
941453 TGCTCTTTGAGGACTGAAAGGTGCCACCACTCGTTGTGGGCTTTGAAAGGTGTCCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCACTCGTTGTGGGCTTTGAAAGGCGTCCC
941509 TGCTCTTTGAGGACTGAAAGG
1 TGCTCTTTGAGGACTGAAAGG
941530 CCACTAACTG
Statistics
Matches: 115, Mismatches: 11, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
55 28 0.24
56 35 0.30
57 15 0.13
58 10 0.09
59 27 0.23
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (56 bp):
TGCTCTTTGAGGACTGAAAGGTGCCACCACTCGTTGTGGGCTTTGAAAGGCGTCCC
Found at i:942189 original size:55 final size:57
Alignment explanation
Indices: 942120--942251 Score: 175
Period size: 55 Copynumber: 2.4 Consensus size: 57
942110 AATTCCACCA
942120 AACTC-TGTGGGCTTTGAAAGGGGTCCTAACTCTTTGA-GGACTGAAAGGTGCCAC-
1 AACTCGTGTGGGCTTTGAAAGGGGTCCTAACTCTTTGATGGACTGAAAGGTGCCACT
* * **
942174 AACTCGTGTGGGCTTTGAAATGTGTCCTGGCTCTTTGATGGACTGAAAGGTGCCACT
1 AACTCGTGTGGGCTTTGAAAGGGGTCCTAACTCTTTGATGGACTGAAAGGTGCCACT
*
942231 AACTTGTG-GTGGC-TTGAAAGG
1 AACTCGTGTG-GGCTTTGAAAGG
942252 AAAAGGCCAT
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
54 5 0.07
55 28 0.41
56 25 0.37
57 10 0.15
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (57 bp):
AACTCGTGTGGGCTTTGAAAGGGGTCCTAACTCTTTGATGGACTGAAAGGTGCCACT
Done.