Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1886

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23582
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:399 original size:2 final size:2

Alignment explanation


    Indices: 392--421  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

        382 ATGGTCAAAC

                                                        
        392 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

        422 TAAATAAATA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
CT

Found at i:4330 original size:2 final size:2

Alignment explanation


    Indices: 4323--4360  Score: 76
    Period size: 2  Copynumber: 19.0  Consensus size: 2

       4313 AGGCAAAAAT

                                                                    
       4323 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

       4361 GAGTGCAAAA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   36  1.00

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (2 bp):   
AG

Done.