genome.fa.s1887.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1887
Parameters: 2 7 7 80 10 50 1000
Length:  86487

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3743--3804	30	2.1	29	84	6	79	22	1	24	51	1.57
3935--3962	13	2.2	13	100	0	56	28	14	14	42	1.84
6032--6086	28	2.0	28	100	0	110	36	18	21	23	1.95
6572--6620	13	4.2	13	75	24	63	32	12	18	36	1.88
6551--6620	33	2.1	34	89	7	108	32	12	20	34	1.90
9116--9210	45	2.1	45	86	0	127	25	28	20	26	1.99
9182--9514	79	4.2	79	79	4	379	27	22	13	37	1.91
16655--16745	47	1.9	47	84	0	119	35	16	26	21	1.95
16755--17175	49	8.9	49	71	12	218	30	19	24	25	1.98
16809--16986	91	2.0	87	82	4	212	30	20	22	26	1.98
16759--17170	137	3.0	137	81	2	475	30	19	25	25	1.98
17175--17357	34	5.5	33	76	7	133	36	13	31	18	1.89
17244--17305	30	2.0	32	87	6	92	37	14	29	19	1.91
17172--17361	64	2.9	64	79	7	193	36	13	31	18	1.89
17342--17569	28	8.0	28	84	4	269	19	17	28	33	1.95
17334--17567	56	4.1	58	86	4	321	21	17	28	32	1.96
17372--17569	87	2.3	86	91	2	308	20	18	28	32	1.96
18994--19082	17	4.8	19	77	10	80	1	1	16	80	0.83
18994--19082	26	3.4	25	83	14	108	1	1	16	80	0.83
18994--19084	13	6.8	13	74	17	80	1	1	16	81	0.81
22620--22744	52	2.4	52	94	2	216	29	17	18	34	1.94
22620--22764	52	2.8	50	87	8	193	31	17	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22797--22863	33	2.0	33	88	0	98	40	14	11	32	1.83
22819--22843	13	1.9	13	100	0	50	32	16	16	36	1.90
23422--23808	169	2.2	172	82	5	444	37	15	24	22	1.93
23718--24044	43	6.8	48	80	11	296	31	17	25	25	1.97
23718--23992	92	3.0	92	91	1	442	31	18	25	25	1.97
23660--24044	49	7.8	49	79	10	317	31	16	25	25	1.97
24037--24111	32	2.4	31	91	6	125	17	16	37	29	1.91
24146--24218	29	2.5	30	77	4	76	30	19	31	19	1.96
24184--24270	27	3.1	27	78	6	84	18	17	33	31	1.94
25700--25805	1	106.0	1	73	0	86	0	0	12	86	0.61
25700--25803	10	9.7	10	78	17	111	0	0	12	86	0.62
25700--25799	29	3.5	28	83	9	123	0	1	13	86	0.64
25700--25807	45	2.4	44	85	10	155	0	0	12	86	0.63
25701--25805	55	2.0	52	88	9	158	0	0	12	86	0.62
35494--35520	10	2.7	10	100	0	54	77	22	0	0	0.76
39635--39783	52	2.9	51	85	4	208	32	17	16	33	1.93
39772--39796	13	1.9	13	100	0	50	36	16	16	32	1.90
39837--39903	33	2.0	33	88	0	98	40	14	11	32	1.83
39859--39883	13	1.9	13	100	0	50	32	16	16	36	1.90
49122--49187	33	2.0	33	87	0	96	42	12	13	31	1.81
49308--49346	21	1.9	20	89	5	60	30	12	17	38	1.88
50253--50339	28	2.9	30	80	13	99	18	16	31	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50352--50699	34	10.9	34	74	18	137	36	12	31	19	1.89
50435--50554	27	4.2	27	81	14	152	33	13	33	20	1.91
50402--50696	61	4.8	61	82	9	357	36	12	30	19	1.90
50522--50689	68	2.6	68	82	10	201	38	10	31	19	1.86
50590--50682	27	3.2	27	73	19	87	35	11	32	20	1.89
50624--50683	27	2.2	27	93	0	102	33	13	33	20	1.91
50691--50767	28	2.8	28	95	0	136	15	19	29	35	1.93
50590--50734	61	2.4	61	82	2	148	33	13	30	22	1.93
50988--51045	21	2.8	21	81	5	73	36	15	15	32	1.89
51156--51181	13	2.0	13	100	0	52	30	15	15	38	1.88
53549--53674	51	2.4	50	83	7	153	34	23	11	30	1.91
53658--53732	27	2.7	28	89	6	109	24	33	20	22	1.97
53718--53836	51	2.3	52	83	1	141	30	29	10	30	1.90
62164--62217	20	2.7	20	91	5	83	37	18	12	31	1.89
64311--64354	23	1.9	24	86	9	65	36	22	11	29	1.89
64758--64784	13	2.1	13	100	0	54	40	7	14	37	1.74
64873--64928	13	3.8	13	75	24	58	37	8	21	32	1.84
64854--64928	32	2.3	32	97	0	141	36	9	21	33	1.85
64833--64920	19	4.9	19	73	17	80	35	11	21	31	1.89
70213--70239	13	2.1	13	100	0	54	40	14	14	29	1.86
72837--72874	20	1.9	20	89	10	60	55	18	0	26	1.43

Tables:   1

The End!