Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1890
Parameters: 2 7 7 80 10 50 1000
Length:  56573

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87--132
17
2.6
18
82
3
58
76
0
17
6
1.00
198--227
2
15.0
2
92
0
51
50
0
3
46
1.18
1936--1970
18
1.9
18
88
0
52
37
11
11
40
1.77
4184--4247
2
32.0
2
100
0
128
50
0
0
50
1.00
4385--4417
16
2.0
17
88
5
50
54
3
0
42
1.15
5318--5423
15
7.3
15
70
19
66
50
2
2
44
1.31
5380--5435
15
3.9
15
86
11
66
51
1
0
46
1.11
9192--9229
16
2.4
16
95
0
67
28
2
13
55
1.51
10915--10944
15
2.0
15
93
0
51
63
0
10
26
1.26
15382--15426
19
2.4
18
85
7
63
44
0
0
55
0.99
15379--15427
18
2.5
20
78
18
59
42
0
0
57
0.99
15462--15495
10
3.4
10
83
0
50
55
0
0
44
0.99
18401--18449
22
2.2
22
82
7
64
65
0
0
34
0.93
19319--19361
21
2.0
22
86
4
61
58
4
0
37
1.19
19412--19475
27
2.3
26
81
7
74
34
0
1
64
1.03
19423--19479
14
4.1
14
70
20
57
31
0
0
68
0.90
22729--22805
38
2.0
38
100
0
154
38
23
7
29
1.83
24237--24278
5
8.4
5
79
10
50
66
0
0
33
0.92
24281--24341
16
3.7
16
77
18
54
47
0
0
52
1.00
24309--24347
19
2.0
20
90
5
62
51
0
0
48
1.00
24309--24357
19
2.5
19
80
9
55
53
0
0
46
1.00
24344--24376
11
3.0
11
90
0
57
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25008--25058
26
2.0
25
85
14
68
39
0
1
58
1.09
25017--25063
25
1.9
23
83
12
58
42
0
0
57
0.98
25028--25065
19
2.0
19
85
10
51
44
0
0
55
0.99
25016--25069
26
2.2
23
77
9
54
48
0
0
51
1.00
26305--26491
92
2.0
93
97
1
358
27
15
19
37
1.92
34257--34281
2
12.5
2
100
0
50
48
0
0
52
1.00
38165--38204
17
2.3
17
91
4
62
77
0
0
22
0.77
38191--38268
33
2.3
34
76
12
81
55
1
1
42
1.16
39375--39415
20
2.0
21
85
4
57
36
0
0
63
0.95
42073--42100
2
14.0
2
100
0
56
50
0
50
0
1.00
46285--46332
21
2.3
21
80
13
55
47
0
0
52
1.00
46332--46380
20
2.4
22
90
10
77
63
0
0
36
0.95
46627--46674
4
11.8
4
78
12
53
43
0
4
52
1.20
52315--52375
22
2.8
22
89
0
95
29
1
24
44
1.63

Tables:   1

The End!