Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1893
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 75764
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:6862 original size:13 final size:13
Alignment explanation
Indices: 6844--6869 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6834 CAATTTTTTG
6844 TGTATCGATACAT
1 TGTATCGATACAT
6857 TGTATCGATACAT
1 TGTATCGATACAT
6870 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:9247 original size:21 final size:21
Alignment explanation
Indices: 9223--9269 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
9213 TTTGATGCTG
9223 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
9243 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
9264 ATTTTG
1 ATTTTG
9270 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:9408 original size:13 final size:13
Alignment explanation
Indices: 9390--9428 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
9380 ATAATCACCC
*
9390 TGTATCGATACAG
1 TGTATCGATACAA
9403 TGTATCGATACAA
1 TGTATCGATACAA
9416 TGTATCGATACAA
1 TGTATCGATACAA
9429 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:9439 original size:20 final size:20
Alignment explanation
Indices: 9414--9492 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
9404 GTATCGATAC
9414 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
9434 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
9459 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
9479 CATGTATCGATACA
1 AATGTATCGATACA
9493 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:11527 original size:15 final size:15
Alignment explanation
Indices: 11507--11537 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
11497 ATTTCGTTTG
*
11507 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
11522 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
11537 G
1 G
11538 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:15621 original size:13 final size:13
Alignment explanation
Indices: 15603--15628 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15593 CAATTTTTTG
15603 TGTATCGATACAT
1 TGTATCGATACAT
15616 TGTATCGATACAT
1 TGTATCGATACAT
15629 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:18002 original size:21 final size:21
Alignment explanation
Indices: 17978--18024 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
17968 TTTGATGCTG
17978 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
17998 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
18019 ATTTTG
1 ATTTTG
18025 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:18163 original size:13 final size:13
Alignment explanation
Indices: 18145--18183 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
18135 ATAATCACCC
*
18145 TGTATCGATACAG
1 TGTATCGATACAA
18158 TGTATCGATACAA
1 TGTATCGATACAA
18171 TGTATCGATACAA
1 TGTATCGATACAA
18184 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:18194 original size:20 final size:20
Alignment explanation
Indices: 18169--18247 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
18159 GTATCGATAC
18169 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
18189 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
18214 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
18234 CATGTATCGATACA
1 AATGTATCGATACA
18248 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:20282 original size:15 final size:15
Alignment explanation
Indices: 20262--20292 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
20252 ATTTCGTTTG
*
20262 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
20277 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
20292 G
1 G
20293 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:24376 original size:13 final size:13
Alignment explanation
Indices: 24358--24383 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24348 CAATTTTTTG
24358 TGTATCGATACAT
1 TGTATCGATACAT
24371 TGTATCGATACAT
1 TGTATCGATACAT
24384 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:26739 original size:24 final size:24
Alignment explanation
Indices: 26711--26790 Score: 73
Period size: 24 Copynumber: 3.6 Consensus size: 24
26701 AAGAATAGAG
26711 AGGAGGGATGATAGGAGGAGAGAC
1 AGGAGGGATGATAGGAGGAGAGAC
* *
26735 AGGA--GA-GAT---AGTAGAGAT
1 AGGAGGGATGATAGGAGGAGAGAC
*
26753 AGGAGGGATGATAGGACGAGAGAC
1 AGGAGGGATGATAGGAGGAGAGAC
* *
26777 AGGAGAGATAATAG
1 AGGAGGGATGATAG
26791 AGAGAGGAGG
Statistics
Matches: 43, Mismatches: 7, Indels: 12
0.69 0.11 0.19
Matches are distributed among these distances:
18 11 0.26
20 2 0.05
21 6 0.14
22 2 0.05
24 22 0.51
ACGTcount: A:0.41, C:0.04, G:0.44, T:0.11
Consensus pattern (24 bp):
AGGAGGGATGATAGGAGGAGAGAC
Found at i:26745 original size:21 final size:20
Alignment explanation
Indices: 26720--26786 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 20
26710 GAGGAGGGAT
26720 GATAGGAGGAGAGACAGGAGA
1 GATAGGA-GAGAGACAGGAGA
* * *
26741 GATAGTAGAGATAGGAGG-GA
1 GATAGGAGAGAGA-CAGGAGA
26761 TGATAGGACGAGAGACAGGAGA
1 -GATAGGA-GAGAGACAGGAGA
26783 GATA
1 GATA
26787 ATAGAGAGAG
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
20 7 0.19
21 22 0.61
22 7 0.19
ACGTcount: A:0.42, C:0.04, G:0.43, T:0.10
Consensus pattern (20 bp):
GATAGGAGAGAGACAGGAGA
Found at i:26757 original size:42 final size:42
Alignment explanation
Indices: 26707--26814 Score: 180
Period size: 42 Copynumber: 2.6 Consensus size: 42
26697 GAGAAAGAAT
*
26707 AGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAGTAG
1 AGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAATAG
* *
26749 AGATAGGAGGGATGATAGGACGAGAGACAGGAGAGATAATAG
1 AGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAATAG
*
26791 AGAGAGGAGGGATGACAGGAGGAG
1 AGAGAGGAGGGATGATAGGAGGAG
26815 GAGAGAAGAA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.41, C:0.04, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAATAG
Found at i:31621 original size:42 final size:42
Alignment explanation
Indices: 31556--31672 Score: 139
Period size: 42 Copynumber: 2.8 Consensus size: 42
31546 TCTTCCATCT
* * * * *
31556 TCTTCTCTC-CTCCTCCTGTCATCCCTCCTCTCTCTATTATC
1 TCTTCTATCTCTCCTACTATCATCCCTCCTATCTCTACTATC
31597 TCTTCTATCTCTCCTACTATCATCCCTCCTATCTCTACTATC
1 TCTTCTATCTCTCCTACTATCATCCCTCCTATCTCTACTATC
* * *
31639 TC-TCTTATCTCTCATTCTATCATCCCTCCCATCT
1 TCTTC-TATCTCTCCTACTATCATCCCTCCTATCT
31673 TCTTTCTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
41 10 0.15
42 56 0.85
ACGTcount: A:0.13, C:0.43, G:0.01, T:0.44
Consensus pattern (42 bp):
TCTTCTATCTCTCCTACTATCATCCCTCCTATCTCTACTATC
Found at i:31628 original size:24 final size:24
Alignment explanation
Indices: 31601--31672 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 24
31591 ATTATCTCTT
31601 CTATCTCTCCTACTATCATCCCTC
1 CTATCTCTCCTACTATCATCCCTC
31625 CTA--TCT-CTACTATC-T--CTC
1 CTATCTCTCCTACTATCATCCCTC
* * *
31643 TTATCTCTCATTCTATCATCCCTC
1 CTATCTCTCCTACTATCATCCCTC
*
31667 CCATCT
1 CTATCT
31673 TCTTTCTCTT
Statistics
Matches: 37, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
18 5 0.14
20 4 0.11
21 14 0.38
22 4 0.11
24 10 0.27
ACGTcount: A:0.17, C:0.42, G:0.00, T:0.42
Consensus pattern (24 bp):
CTATCTCTCCTACTATCATCCCTC
Found at i:34717 original size:159 final size:159
Alignment explanation
Indices: 34426--34717 Score: 333
Period size: 159 Copynumber: 1.8 Consensus size: 159
34416 TTCTATTCAC
* * * *
34426 TGGGATACACGATATTGATGTTTTGATCATATAAGAAAAGCTTTTCTTGCCATGATATTCCTTAT
1 TGGGATACACGATATTAATGATTTGATCATATAAGAAAAGCTTTTCTTGCCATCATATTCCTTAG
*** * * * * *
34491 AATTTGAGTTCGTATCTCAAATGAAACAAACATGGATTCTTATAATAATCCTCATTCTTTTCCTG
66 AATCAAAGTTCATACCTCAAATGAAACAAACATGGATTCTCACAATAATCCTCATTCTTTTCATG
34556 ATTAGGTAACCAAAACGCATTCTCCTTAT
131 ATTAGGTAACCAAAACGCATTCTCCTTAT
* * *
34585 TGGGATACACGATATTAATGATTTGAT-TTCATAAGAAAAGCTTTT-TTGTCTATCATTTTCCTT
1 TGGGATACACGATATTAATGATTTGATCAT-ATAAGAAAAGCTTTTCTTG-CCATCATATTCCTT
* * * *
34648 AGAATCAAAGTTTATACCTTAATTGAGACAAACATGGATT-TACACAATAAT-CTCCATTC-TTT
64 AGAATCAAAGTTCATACCTCAAATGAAACAAACATGGATTCT-CACAATAATCCT-CATTCTTTT
34710 CAATGATT
127 C-ATGATT
34718 GGGCACAATA
Statistics
Matches: 109, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
158 11 0.10
159 98 0.90
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (159 bp):
TGGGATACACGATATTAATGATTTGATCATATAAGAAAAGCTTTTCTTGCCATCATATTCCTTAG
AATCAAAGTTCATACCTCAAATGAAACAAACATGGATTCTCACAATAATCCTCATTCTTTTCATG
ATTAGGTAACCAAAACGCATTCTCCTTAT
Found at i:35202 original size:610 final size:609
Alignment explanation
Indices: 32932--38724 Score: 7862
Period size: 611 Copynumber: 9.5 Consensus size: 609
32922 TGGTTTTCAT
* * *
32932 CATTGGATATGCAAGTAAAGTTTGTCTTGCCACTTATTTCCTTAAAGCAAAGTTCGTTCATCAAA
1 CATTGGTTATGCAAGAAAAGTTT-TCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAAA
* *
32997 TAAGACAAATAA-GGATTCTTGTAATAATCTCCATTATTTTGTGATTAGGTAGCCAAAATACT-T
65 TAAGACAAA-AATGGATTCTTGTAATAATCTCCATT-TTTTGTGATTAGGTAGCCAAAACA-TGC
**
33060 TCTCTTCATTAGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCGTTA
127 TCTCTTCATTAGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTA
* * * *
33125 TCTTTTTAAAATCAAAGTTTGTCCTTTAAAAGAGACAAAAATGAATTCTCATATTGATCTCCAAA
192 CCTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAGTGATCTCCAAA
** * *
33190 ACACATTCTATTTGTTGGGATACAGGATATTGATGTTTTGATTGTATAAGAAAAGCTTTTCTTGC
257 ACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGC
* * * *
33255 CATGATTTTCCTTATAATTTAAGTTCCTAAGTCAAATGAAACAAACTTGGATTCTTATAATAATC
322 CATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATC
* * *
33320 TTCATTCTTTTCATGATTAGGCAACAAAAACACATTCTCCTTATTGGGATACATGATATTGATGC
387 TTCATTCTTTTCATGATTAGGCAACCAAAACGCATTCTCCTTATTGGGATACATGATATTAATGC
*
33385 TTTGATTTCATAAGAAAAGTCTTTTTTCTCCATCGTTTTTCTTAGAATCAAAGTTTATACCTTAA
452 TTTGATTTCATAAGAAAAG-CTTTTTTCTCCATCGTTTTCCTTAGAATCAAAGTTTATACCTTAA
* * * * * * **
33450 CTGAGACCAATATGGATTTACACAATAATCTCCATTCTTTCATTGATTGGGCACCATAAAGATGT
516 ATGAGACAAACATGGATTTACACAATAATCTCCATTCTTTCAATGATTGGGCACCATAGACACAT
* *
33515 TATCTTCTTTAGGATGCACAATTTTGATG
581 TATCTTCTTTGGGATGCACAATATTGATG
* * * * * * **
33544 CATTTGTTAT-CTACGTAAAGTTTTCTAGCCACTAATTTCCTTAGAGCAAAGTTCGCTCATCAAA
1 CATTGGTTATGC-AAGAAAAGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAAA
* * * * * *
33608 TAAGACAGAAATAGATTCTTGTAATAATCTCCCATTTTTTGTGATTAGATAGCTAAAACACGCTT
65 TAAGACAAAAATGGATTCTTGTAATAATCT-CCATTTTTTGTGATTAGGTAGCCAAAACATGCTC
* * * *
33673 TCTTCCTTCGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTGTTTCCACTGCC
129 TCTTCATTAGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACC
* * * *
33738 ATTTTAAATTCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAGTGATCTTCAAAAA
194 TTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAGTGATC-TCCAAAA
* *
33803 CACATTATATTCACTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCC
258 CACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCC
*
33868 ATGATATTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCT
323 ATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCT
* * *
33933 TCATTCTTTTCTTGATTAGGTAACCAAAACGCATTCTCCTTATTGGGATACATGATATTAATGAT
388 TCATTCTTTTCATGATTAGGCAACCAAAACGCATTCTCCTTATTGGGATACATGATATTAATGCT
** * *
33998 TTGATTTCATAAGAAAAGCTTTTTGGTCCATCGTTTTCCTTAGAATCAAAGTTTAAACCTTAATT
453 TTGATTTCATAAGAAAAGCTTTTTTCTCCATCGTTTTCCTTAGAATCAAAGTTTATACCTTAAAT
* * *** * * * *
34063 GGGAGAAACATGGATTTTTGCAATATTCTCCATTCTTTCAAAGATTAGGCACCATAAACACATTA
518 GAGACAAACATGGATTTACACAATAATCTCCATTCTTTCAATGATTGGGCACCATAGACACATTA
* *
34128 TCTTCTTTGGGATGCACAATATCGACG
583 TCTTCTTTGGGATGCACAATATTGATG
* **
34155 CATTGGTTATGCAAGAAAAGCTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTTGTCAAAT
1 CATTGGTTATGCAAGAAAAGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAAAT
* * * * * * *
34220 AAGACAAAAATGGAATCATGTAATAGTCTCCAATTTTTGTGATTAGGAAGCCCAAACAGGCTCTC
66 AAGACAAAAATGGATTCTTGTAATAATCTCCATTTTTTGTGATTAGGTAGCCAAAACATGCTCTC
* *
34285 TTCATTAGGATGCATGATCTTGATGCTTTGATTTTCGTAAGAAATGCTTTTCTTTCCACTACC-T
131 TTCATTAGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCTT
* * *
34349 TTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCGTAGTGATCTTCAAAAACA
196 TTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAGTGATC-TCCAAAACA
* * *
34414 CATTCTATTCACTGGGATACACGATATTGATGTTTTGATCATATAAGAAAAGCTTTTCTTGCCAT
260 CATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCAT
* * *
34479 GATATTCCTTATAATTTGAGTTCGTATCTCAAATGAAACAAACATGGATTCTTATAATAATCCTC
325 GATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTC
* * * *
34544 ATTCTTTTCCTGATTAGGTAACCAAAACGCATTCTCCTTATTGGGATACACGATATTAATGATTT
390 ATTCTTTTCATGATTAGGCAACCAAAACGCATTCTCCTTATTGGGATACATGATATTAATGCTTT
* * * *
34609 GATTTCATAAGAAAAGCTTTTTTGTCTATCATTTTCCTTAGAATCAAAGTTTATACCTTAATTGA
455 GATTTCATAAGAAAAGCTTTTTTCTCCATCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGA
* *
34674 GACAAACATGGATTTACACAATAATCTCCATTCTTTCAATGATTGGGCACAATAGACATATTATC
520 GACAAACATGGATTTACACAATAATCTCCATTCTTTCAATGATTGGGCACCATAGACACATTATC
34739 TTCTTTGGGATGCACAATATTGATG
585 TTCTTTGGGATGCACAATATTGATG
*
34764 CATTGGTTATGCAAGAAAAGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCGTCAAAT
1 CATTGGTTATGCAAGAAAAGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAAAT
*
34829 AATACAAAAATGGATTCTTGTAATAATCTCCATTATTTTGTGATTAGGTAGCCAAAACATGCTCT
66 AAGACAAAAATGGATTCTTGTAATAATCTCCATT-TTTTGTGATTAGGTAGCCAAAACATGCTCT
* *
34894 CTTCAATAGGATGCATGATATTGATGCTTTGATTTTTGCAAGAAATGCTTTTCTTTCCACTACCT
130 CTTCATTAGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCT
*** * * *
34959 TTTTATTGTCAAAGTTTGTCCTTTAAAAGAGACAAAAATGAATTCTCATATTGATCTCCAAAACA
195 TTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAGTGATCTCCAAAACA
* *
35024 CATTCTATTCGTTGGGATACATGATATTGATGGTTTGATTATATAAGAAAAGCTTTTCTTGCGC-
260 CATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGC-CA
* * * * * *
35088 TAATTTTCCTTATAATTTAAGTTCATATGTCAGATTAAACAAACTTGGATTCTTATAATAATCTT
324 TGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTT
*
35153 CATTCTTTTCGTGATTAGGCAACCAAAACGCATTCTCCTTATTGGGATACATGATATTAATGCTT
389 CATTCTTTTCATGATTAGGCAACCAAAACGCATTCTCCTTATTGGGATACATGATATTAATGCTT
* * * *
35218 TGATTTCATAAGAAAAGTTTTTTTCTCCATCATTTTTCTTAGAATCAAAGTTTATACCTTAACTG
454 TGATTTCATAAGAAAAGCTTTTTTCTCCATCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATG
* * ** * ** * * *
35283 AGACCAATATGGATTTACGTAATAATCTCAATTCTTTCAGGGATTGGGCACCATAAAGACTTTAT
519 AGACAAACATGGATTTACACAATAATCTCCATTCTTTCAATGATTGGGCACCATAGACACATTAT
35348 CTTCTTTGGGATGCACAAT-TTCGATG
584 CTTCTTTGGGATGCACAATATT-GATG
* * * * * ** *
35374 CATTGGTTATGTAGGTAAAGTTTTTCTGGCCACTTATTTCCTTATAGCAAAGTTCGCTCGTCAAA
1 CATTGGTTATGCAAGAAAAG-TTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAAA
* * *** ** *
35439 TAAGACAGAAATAGATTCTTGTAATAATCTCCAATTTTTTGTGATTAGACGGCCAAAACACACTT
65 TAAGACAAAAATGGATTCTTGTAATAATCTCC-ATTTTTTGTGATTAGGTAGCCAAAACATGCTC
* * *
35504 TCTTCCTTCGGATGCATGATATTGATGCTTTGATTTTCGTAAGAAATGCTTTTCTTTCCACTACC
129 TCTTCATTAGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACC
* * * *
35569 ATTTTAAATTCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAGTGATCTTCAAAAA
194 TTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAGTGATC-TCCAAAA
* *
35634 CACATTCTATTCACTGGGATAAATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCC
258 CACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCC
*
35699 ATGATATTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCT
323 ATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCT
* * * * *
35764 TCATTCTTTTCCTGATTAGGTAACCAAAATGCATTCTCCTTATTGGGATACACGATATTAATGAT
388 TCATTCTTTTCATGATTAGGCAACCAAAACGCATTCTCCTTATTGGGATACATGATATTAATGCT
* * * * *
35829 TTGATTTCATAAGAAAAGCTTTTTTGTCCATCGTTTTCCTTAAAATAAAAGTTTAAACCTTAACT
453 TTGATTTCATAAGAAAAGCTTTTTTCTCCATCGTTTTCCTTAGAATCAAAGTTTATACCTTAAAT
* * * * *
35894 -AGGACAAACATGGATTTTTC-CAATATTCTCCATTCTTTTAATGATTGGGCACCATAAACACGT
518 GA-GACAAACATGGA-TTTACACAATAATCTCCATTCTTTCAATGATTGGGCACCATAGACACAT
* *
35957 TATCTTCTTTGGGATGCACAATATCGACG
581 TATCTTCTTTGGGATGCACAATATTGATG
* * * * *
35986 CATTGGTTATGCAAGAAAAGCTTTCTTGCCAATTATTTCCTAAAAGCAAAATTCATTCGTCAAAT
1 CATTGGTTATGCAAGAAAAGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAAAT
* * * * * * *
36051 AAGACAAAAATGGAATCATGTAATAGTCTCCATTTTTTGTGATTAGGAAGCCCAAATAGGCTCTC
66 AAGACAAAAATGGATTCTTGTAATAATCTCCATTTTTTGTGATTAGGTAGCCAAAACATGCTCTC
* *
36116 TTCATTAGGATGCATGATCTTGATGCTTTGATTTTCGCAAAAAAATGCTTTTCTTTCCACTACC-
131 TTCATTAGGATGCATGATATTGATGCTTTGATTTTCGC-AAGAAATGCTTTTCTTTCCACTACCT
* *
36180 TTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGGATTCTCATAGTGATCTTCAAAAAC
195 TTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAGTGATC-TCCAAAAC
*
36245 ACATTCTATTCACTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCA
259 ACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCA
* *
36310 TGATATTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTACAATAATCTT
324 TGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTT
*
36375 CATTCTTTTCATGATTAGGCAACCAAAACACATTCTCC---TT---ATACATGATATTAATGCTT
389 CATTCTTTTCATGATTAGGCAACCAAAACGCATTCTCCTTATTGGGATACATGATATTAATGCTT
* *
36434 TGATTTCATAAGAAAAGCATTTTTCTCCATCATTTTCCTTAGAATCAAAGTTTATACCTTAAATG
454 TGATTTCATAAGAAAAGCTTTTTTCTCCATCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATG
* * * * * *
36499 AGATAAACTTGGATTTACACAATAATCTCCTTTCTTTCAATGATTAGGCACTGTACAGACA-ATT
519 AGACAAACATGGATTTACACAATAATCTCCATTCTTTCAATGATTGGGCAC--CATAGACACATT
36563 -TCTTCTTTGGGATGCACAATATTGATG
582 ATCTTCTTTGGGATGCACAATATTGATG
* * *
36590 CATTGGTTATGCAAGTAAAGTTTTTCTTGCCACTTATTTCCTTAAAGTAGAGTTCATTCATCAAA
1 CATTGGTTATGCAAGAAAAG-TTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAAA
* * * * * *
36655 TAAGATAAAAATAGATTCTTGTAATAATATCCATTTTTTTGTGAATAGGTAGCCAAAACACGTTC
65 TAAGACAAAAATGGATTCTTGTAATAATCTCCA-TTTTTTGTGATTAGGTAGCCAAAACATGCTC
* * * * *
36720 TCTTCCTTGGGATGCATGATATTGATGCTTTGATTTTCGTAAGAAATGTTTTTCTTTCCATTACC
129 TCTTCATTAGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACC
* * *
36785 TTTTTAAAATCAAAGTTTTTCCTTTAAAAGAGACAAAGATGAATTCTCATAATGATCTCCAAAAA
194 TTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAGTGATCTCC-AAAA
* * * *
36850 CACATTCTATTCATTGGGATACATGTTATTGATGTTTTGATTTTATAAGAAGAGCATTTCTTGCC
258 CACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCC
* *
36915 ACGATTTTCCTTATAATTTGAGTTCATATGTCAAATGAAACAAACATGGATTCTTATAATAATCT
323 ATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCT
* * * * * *
36980 TAATTCTTTTCATGATTAGGCATCCAAAATGCATTCTCCATATTGGGATACATGATATTAACGTT
388 TCATTCTTTTCATGATTAGGCAACCAAAACGCATTCTCCTTATTGGGATACATGATATTAATGCT
* * * *
37045 TTGATTTCATAATAAAAGTTTTTTTCTCC-TCCATTTTCCTTAGAATCAAAGTTTATACCTTAAT
453 TTGATTTCATAAGAAAAGCTTTTTTCTCCAT-CGTTTTCCTTAGAATCAAAGTTTATACCTTAAA
** * *
37109 TGAGACAAACATGGATTTATGCAATAATCTCCATT-TGTTCAACGATTGGGCACAATAGACACAT
517 TGAGACAAACATGGATTTACACAATAATCTCCATTCT-TTCAATGATTGGGCACCATAGACACAT
*
37173 TATCTTCTTTGGGATGCATAATATTGATG
581 TATCTTCTTTGGGATGCACAATATTGATG
* *
37202 CATTGGTTATGTAAGAAACA-CTTTCTTGCCACTTATTTCCTTAAAAGCAAAGTTCATTCATCAA
1 CATTGGTTATGCAAGAAA-AGTTTTCTTGCCACTTATTTCCTT-AAAGCAAAGTTCATTCATCAA
* * * *
37266 CTAATACAAAAATGGATTCTTGTAATAATCTCCATTTTTTGTGATTAGGAAGCCCAAACATGCTC
64 ATAAGACAAAAATGGATTCTTGTAATAATCTCCATTTTTTGTGATTAGGTAGCCAAAACATGCTC
* * * * *
37331 TCTTCATTAGGATGCATGATATTGATGCTTTGATTTTCACAAAAAATGATTTCCTTCCCACTACC
129 TCTTCATTAGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACC
* *
37396 TTTTTAAAATCAAAGTTTGTCCATTAAAAGAGACAAAGATGAATTCTCATAATGATCTCCAAAAT
194 TTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAGTGATCTCCAAAA-
*
37461 CACAATT-TATTTATTGGGATACATGATATTGATGTTTTGATTATATAAG-AAAGCTTTTCTTGC
258 CAC-ATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGC
* *
37524 CATGATTTTCCTTATAATTTGAGTTCATATGTCAAATGAAACAAACATGGATTCTTACAATAATC
322 CATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATC
*
37589 TTCATTCTTTTCATGATTAGGCAACC-AAACACATTCTCC---TT---ATACATGATATTAATGC
387 TTCATTCTTTTCATGATTAGGCAACCAAAACGCATTCTCCTTATTGGGATACATGATATTAATGC
*
37647 TTTGATTTCATAAGAAAAGCATTTTTCTCCATCGTTTTCCTTAGAATCAAAGTTTATACCTTAAA
452 TTTGATTTCATAAGAAAAGCTTTTTTCTCCATCGTTTTCCTTAGAATCAAAGTTTATACCTTAAA
* * * * * *
37712 TGAGAAAAACTTGGATTTACGCAATAATCTCCATTCTTTCAATGATTAGGCACTGTACAGACA-A
517 TGAGACAAACATGGATTTACACAATAATCTCCATTCTTTCAATGATTGGGCAC--CATAGACACA
37776 TT-TCTTCTTTGGGATGCACAATATTGATG
580 TTATCTTCTTTGGGATGCACAATATTGATG
* * * * * *
37805 CATTGGTTATGTAAGTAAAGTTTTTCTTGCCACTAATTTCCTTAAAGTAGAGTTCGTTCATCAAA
1 CATTGGTTATGCAAGAAAAG-TTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAAA
* * * *
37870 TAAGATAAAAATAGATTCTTGTAATAATATCCATTTTTTTGTGATTAGGTAGCCAAAACATGTTC
65 TAAGACAAAAATGGATTCTTGTAATAATCTCCA-TTTTTTGTGATTAGGTAGCCAAAACATGCTC
* ** *
37935 TCTTTC-TTGGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATATTTTTCTTTCCATTAC
129 TC-TTCATTAGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTAC
* * * *
37999 CTTTTTAAAATCAGAGTTTTTCCTTTAAAAGAGACAAAGATGAATTCTCATATTGATCTCCAAAA
193 CTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAGTGATCTCCAAAA
* *
38064 CACATTCTATTCATTTGGATACATGATATTTATGTTTTGATTATATAAGAAAAGCTTTTCTTGCC
258 CACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCC
* * * * * *
38129 ACGACTTTCCTTATAATTTGAGTTCGTAAGTCAAATGAAACAAATAAGGATTCTTATATTAATCT
323 ATGATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCT
* * ** *
38194 TCATCCTTTTCATGATTAGGCAACCAAAACACATTCTTATTATTGGGATACAAGATATTAATGCT
388 TCATTCTTTTCATGATTAGGCAACCAAAACGCATTCTCCTTATTGGGATACATGATATTAATGCT
*
38259 TTGATTTCATAAGAAAAGCATTTTTCTCCATCGTTTTCCTTAGAATCAAAGTTTATACCTTAAAT
453 TTGATTTCATAAGAAAAGCTTTTTTCTCCATCGTTTTCCTTAGAATCAAAGTTTATACCTTAAAT
* * *
38324 GAGATAAACATGGATTTACACGATAATCTCCATTCTTTCAATGATTGGGCACCATAAACACGA-T
518 GAGACAAACATGGATTTACACAATAATCTCCATTCTTTCAATGATTGGGCACCATAGACAC-ATT
** **
38388 ATCTTCTTTAAGATTTACAATATTGATG
582 ATCTTCTTTGGGATGCACAATATTGATG
* * **
38416 CATTGGTTATGCAAGAAAAGCTTTACTTGCCACTTATTTCCTTAAAGCGAAGTTTC-TTTGTCAA
1 CATTGGTTATGCAAGAAAAG-TTTTCTTGCCACTTATTTCCTTAAAGCAAAG-TTCATTCATCAA
* * * * * * * *
38480 A-ATAGCCAAAAATGTATTCTTGTAATATTCTCCATTTTTTCTGATTACGAAGCCAAAGCATGCC
64 ATA-AGACAAAAATGGATTCTTGTAATAATCTCCATTTTTTGTGATTAGGTAGCCAAAACATGCT
* * * * *
38544 CTATTCATTAGGTTGAATGATATTGATGCTTTGATTTTCGCAAGAAA-------C---GCACAAC
128 CTCTTCATTAGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTAC
* * *
38599 ATTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGGCAAAGATGAATTCTCATAATGATCTCCAAAA
193 CTTTTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAGTGATCTCC-AAA
* ***
38664 ACACATTCTATTCTTTGGGATACATGATATTGACACTTTGATT-TCATAAGAAAAGCATTTT
257 ACACATTCTATTCATTGGGATACATGATATTGATGTTTTGATTAT-ATAAGAAAAGC-TTTT
38725 TCTCCGTCAT
Statistics
Matches: 4602, Mismatches: 513, Indels: 142
0.88 0.10 0.03
Matches are distributed among these distances:
600 60 0.01
601 51 0.01
602 8 0.00
603 256 0.06
604 418 0.09
605 111 0.02
606 280 0.06
607 2 0.00
608 2 0.00
609 505 0.11
610 970 0.21
611 1162 0.25
612 771 0.17
613 6 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.38
Consensus pattern (609 bp):
CATTGGTTATGCAAGAAAAGTTTTCTTGCCACTTATTTCCTTAAAGCAAAGTTCATTCATCAAAT
AAGACAAAAATGGATTCTTGTAATAATCTCCATTTTTTGTGATTAGGTAGCCAAAACATGCTCTC
TTCATTAGGATGCATGATATTGATGCTTTGATTTTCGCAAGAAATGCTTTTCTTTCCACTACCTT
TTTAAAATCAAAGTTTGTCCCTTAAAAGAGACAAAGATGAATTCTCATAGTGATCTCCAAAACAC
ATTCTATTCATTGGGATACATGATATTGATGTTTTGATTATATAAGAAAAGCTTTTCTTGCCATG
ATTTTCCTTATAATTTGAGTTCGTATGTCAAATGAAACAAACATGGATTCTTATAATAATCTTCA
TTCTTTTCATGATTAGGCAACCAAAACGCATTCTCCTTATTGGGATACATGATATTAATGCTTTG
ATTTCATAAGAAAAGCTTTTTTCTCCATCGTTTTCCTTAGAATCAAAGTTTATACCTTAAATGAG
ACAAACATGGATTTACACAATAATCTCCATTCTTTCAATGATTGGGCACCATAGACACATTATCT
TCTTTGGGATGCACAATATTGATG
Found at i:40670 original size:10 final size:11
Alignment explanation
Indices: 40645--40671 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
40635 ATACCAAAAA
40645 AAAAAGAATAC
1 AAAAAGAATAC
40656 AAAAAGAATAC
1 AAAAAGAATAC
40667 AAAAA
1 AAAAA
40672 AAAGAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.78, C:0.07, G:0.07, T:0.07
Consensus pattern (11 bp):
AAAAAGAATAC
Found at i:40673 original size:14 final size:14
Alignment explanation
Indices: 40642--40687 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
40632 AGAATACCAA
40642 AAAAAAAAGAATAC
1 AAAAAAAAGAATAC
40656 ---AAAAAGAATAC
1 AAAAAAAAGAATAC
*
40667 AAAAAAAAGAATAT
1 AAAAAAAAGAATAC
40681 AAAAAAA
1 AAAAAAA
40688 TAAGCCAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
11 11 0.39
14 17 0.61
ACGTcount: A:0.80, C:0.04, G:0.07, T:0.09
Consensus pattern (14 bp):
AAAAAAAAGAATAC
Found at i:40676 original size:25 final size:24
Alignment explanation
Indices: 40642--40689 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
40632 AGAATACCAA
40642 AAAAAAAAGAATACAAAAAGAATAC
1 AAAAAAAAGAATACAAAAA-AATAC
*
40667 AAAAAAAAGAATATAAAAAAATA
1 AAAAAAAAGAATACAAAAAAATA
40690 AGCCAAAGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.79, C:0.04, G:0.06, T:0.10
Consensus pattern (24 bp):
AAAAAAAAGAATACAAAAAAATAC
Found at i:41416 original size:12 final size:11
Alignment explanation
Indices: 41394--41469 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
41384 AGAGAAAAAA
*
41394 GAGAGAGGAGG
1 GAGATAGGAGG
41405 GATGATAGGAGG
1 GA-GATAGGAGG
*
41417 AGAGACAGGA--
1 -GAGATAGGAGG
*
41427 GAGATAGTA--
1 GAGATAGGAGG
41436 GAGATAGGAGG
1 GAGATAGGAGG
41447 GATGATAGGAGG
1 GA-GATAGGAGG
*
41459 AGAGACAGGAG
1 -GAGATAGGAG
41470 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:41486 original size:18 final size:18
Alignment explanation
Indices: 41459--41508 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
41449 TGATAGGAGG
*
41459 AGAGACAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* *
41477 AGAGAGAGGAGGGATGAT
1 AGAGAGAGGAGAGATAAT
41495 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
41509 AGAAGATAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.44, C:0.02, G:0.46, T:0.08
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:41517 original size:42 final size:42
Alignment explanation
Indices: 41384--41502 Score: 202
Period size: 42 Copynumber: 2.8 Consensus size: 42
41374 TAGCCCTCAA
* *
41384 AGAGAAAAAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAATAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
41426 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAATAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
41468 AGAGATAATAGAGAGAGGAGGGATGATAGGAGGAG
1 AGAGATAATAGAGAGAGGAGGGATGATAGGAGGAG
41503 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.44, C:0.02, G:0.45, T:0.09
Consensus pattern (42 bp):
AGAGATAATAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:41526 original size:42 final size:42
Alignment explanation
Indices: 41384--41526 Score: 191
Period size: 42 Copynumber: 3.4 Consensus size: 42
41374 TAGCCCTCAA
* *
41384 AGAGAAAAAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAAGAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
41426 AGAGAT-AGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAAG-AGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
41468 AGAGATAATAGAGAGAGGAGGGATGATAGGAGGAG-GAGAGA
1 AGAGATAAGAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
41509 AGAAGATAAGAGTGAGAG
1 AG-AGATAAGAGAGAGAG
41527 AAAATGAGAG
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
41 7 0.08
42 81 0.91
43 1 0.01
ACGTcount: A:0.45, C:0.01, G:0.45, T:0.09
Consensus pattern (42 bp):
AGAGATAAGAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:49005 original size:510 final size:516
Alignment explanation
Indices: 48025--49058 Score: 1311
Period size: 510 Copynumber: 2.0 Consensus size: 516
48015 CCCAATAAGG
* *
48025 AGAATGTCTATTTGTTGCCTAATCAGGAAAAGGATGAAGATTATTATAAGAATCCATGTTTATTC
1 AGAATGTCTATTTGTTGCCTAATCAGGAAAAGAATGAAGATTATTATAAGAATCCATATTTATTC
* * * * *
48090 ATTTGGCATACGAACTCAAATTATATGGAATATCATGGTAAGAAAAGCTTTTCTTATATAATCAA
66 ATTTGACATACGAACTCAAATTATAAGAAATATCATGGCAAGAAAAGCTTTCCTTATATAATCAA
* * *
48155 AACATCAATATCATGTACCCCAATGAATAGAATGTGTTTTTGGAGATCACTATGAGAATCCATCT
131 AACATCAATATCATGCACCCCAATGAATAGAAAGTGTTTTTAGAGATCACTATGAGAATCCATCT
* *
48220 TTGTCTCTTTTAAGGGACAAACTTTAATTTTAAAATGGTAATGGAAAGAAATGCATTTCTTGCGA
196 TTGTCTCTTTTAAGGGACAAACTTGAATTTTAAAATGGTAATGGAAAGAAAAGCATTTCTT-CG-
* * *
48285 AAATCAAAGCATCAATATCATGCATCCCAATGAAGAGAGCGTGTTTTGGTTGCCTAATCACAAAA
259 --AT---AGCA-CAATATCATGCATCCCAATAAAGAGAGCATGTTTTGGCTGCCTAATCACAAAA
* * * *
48350 AAATAGAGATTATTACAAGAATACCTTTTTGTATTATTTGATGAATGAACTTTGCTTTAGGGAAA
318 AAATAGAGATTATTACAAGAATACCTTTTTATATTATTTGAGGAATGAACTTTGCATTAAGGAAA
** * **
48415 TAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATGTGTCAATATTATGCATCACAATGAAGAAA
383 TAAAAGGCAAGAAAAACTTTTCGTGCATAACCAATGCATCAATATTATGCATCACAATGAAGAAA
* * * *
48480 ACAAGTTTCTGGTGCCTAATCATTGCAAGAATGGAAATTTTTACGTAAATCCATGATTGTCTCAT
448 ACAAGTTTCTGGTGCCCAATCATTGAAAGAATGGAAATTATTACATAAATCCATGATTGTCTCAT
48545 TTAA
513 TTAA
* **
48549 AGAATGTGT-TTTGATTGCCTAATCTTGAAAAGAATGAAGATTATTATAAGAATCCATATTGGT-
1 AGAATGTCTATTTG-TTGCCTAATCAGGAAAAGAATGAAGATTATTATAAGAATCCATATT--TA
** * * *
48612 TTCATTTGACATGTGAACTTAAATTATAAGAAA-ATTCGTGGCAGGAAAAGCTTTCCTTATATAA
63 TTCATTTGACATACGAACTCAAATTATAAGAAATA-TCATGGCAAGAAAAGCTTTCCTTATATAA
* * * **
48676 TCAAAACATCAATATCATGCATCCCAATGAATAGAAAGTGTTTTTAGAGATGATTATGAGAATTG
127 TCAAAACATCAATATCATGCACCCCAATGAATAGAAAGTGTTTTTAGAGATCACTATGAGAATCC
* * *
48741 ATCTTTGTCTC-TTTAGGGGACAAACTATGATTTTTAAAA-GGTAGTGGAAAGAAAAGC-TTTGC
192 ATCTTTGTCTCTTTTAAGGGACAAACT-TGAATTTTAAAATGGTAATGGAAAGAAAAGCATTT-C
* *
48803 TT-G-T-G-A-AA-ATCATGCATCCTAATAAAGGGAGCATGTTTTGGCTGCCTAATCACAAAAAA
255 TTCGATAGCACAATATCATGCATCCCAATAAAGAGAGCATGTTTTGGCTGCCTAATCACAAAAAA
* * *
48862 A-AGGAGATTATTATAGGAATCCCTTTTTATATTATTTGAGGAATGAACTTTGCATTAAGGAAAT
320 ATA-GAGATTATTACAAGAATACCTTTTTATATTATTTGAGGAATGAACTTTGCATTAAGGAAAT
* * *
48926 AAAAGGTAAGAAAAACTTTTCGTGCATAACCAATGCATCAATATTATGCATCCCAATGAAGAGAA
384 AAAAGGCAAGAAAAACTTTTCGTGCATAACCAATGCATCAATATTATGCATCACAATGAAGAAAA
*** * * * *
48991 TGTGTTTGTGGTGCCCAATCATTGAAAGAATGGAGATTATTGCATAAATCCATGTTTGTCTCATT
449 CAAGTTTCTGGTGCCCAATCATTGAAAGAATGGAAATTATTACATAAATCCATGATTGTCTCATT
49056 TAA
514 TAA
49059 GATATAAATT
Statistics
Matches: 444, Mismatches: 59, Indels: 28
0.84 0.11 0.05
Matches are distributed among these distances:
509 1 0.00
510 215 0.48
511 2 0.00
513 1 0.00
514 1 0.00
518 1 0.00
522 1 0.00
523 7 0.02
524 84 0.19
525 130 0.29
526 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (516 bp):
AGAATGTCTATTTGTTGCCTAATCAGGAAAAGAATGAAGATTATTATAAGAATCCATATTTATTC
ATTTGACATACGAACTCAAATTATAAGAAATATCATGGCAAGAAAAGCTTTCCTTATATAATCAA
AACATCAATATCATGCACCCCAATGAATAGAAAGTGTTTTTAGAGATCACTATGAGAATCCATCT
TTGTCTCTTTTAAGGGACAAACTTGAATTTTAAAATGGTAATGGAAAGAAAAGCATTTCTTCGAT
AGCACAATATCATGCATCCCAATAAAGAGAGCATGTTTTGGCTGCCTAATCACAAAAAAATAGAG
ATTATTACAAGAATACCTTTTTATATTATTTGAGGAATGAACTTTGCATTAAGGAAATAAAAGGC
AAGAAAAACTTTTCGTGCATAACCAATGCATCAATATTATGCATCACAATGAAGAAAACAAGTTT
CTGGTGCCCAATCATTGAAAGAATGGAAATTATTACATAAATCCATGATTGTCTCATTTAA
Found at i:52057 original size:599 final size:602
Alignment explanation
Indices: 49821--52182 Score: 2944
Period size: 599 Copynumber: 3.9 Consensus size: 602
49811 AATCCATTTT
* * * *
49821 TATAATCAAAACATCAATATCATGTATCCCAATAAATAGAATGTGTTTTCGAAGATCATTATGAG
1 TATAATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCACTATGAG
* *
49886 AATCCATCTTTATCTCTTTTAAGAGACAAACTTTGATTTTAAAAAGGTAGAGGAACGAAAAGCAT
66 AATCCATC-TTATCTC--------GACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCAT
* * * * *
49951 TTCTTGCGAAAATTAAAGCATCAATATCATGTATGCTAATGAAGAGAG-TG-TTTGGCTGCATAA
122 TTCTTGCTAAAATCAAAGCATCAATATCATGCATCCCAATGAAGAGAGCTGTTTTGGCTGCATAA
*
50014 TCACAAAAAAAATGG-GATTATTACAAGAATCCATTTTTGTATTATTTGACGAATGAACTATGCT
187 TCACAAAAAAAATGGAGATTATTACAAGAATCCATTTTTGTATTATTTGACGAATGAACTTTGCT
*
50078 TTAAGGAAATAAGTAGCAAGAAAAAATTTTCTTTCATAACCAATGCGTCAATATTGTGCAT----
252 TTAAGGAAATAAGTAGCAAGAAAAAATTTTCTTGCATAACCAATGCGTCAATATTGTGCATCCCA
* * * * * *
50139 -TG--CATTACATGTTTATGGTGCCCAATCAATGACAA-AATCGAGATTATTACCTAAATCTATG
317 ATGAAGATAACATGTTTATGGTGCCCAATCATTGA-AAGAATGGAGATTATTACGTAAATCGATG
** * * *
50200 TTTCCCTTATTTAAGGTATAAACTCTGATTCTAAGGAAAACAATGGA-AAAAAAGCTTTTCTTAT
381 TTTGTCTCATTTAAGGTATAAACTTTGATTCTAAGGAAAACGATGGAGAAAAAAGCTTTTCTTAT
* * * * *
50264 GAAAACAAAGCGTTAATATCGTGTATCCCTATAAGGAAAATGTGTTTTGGTTGCC--ATCATGGA
446 GAAATCAAAGCTTTAATATCGTGTATCCCAATAAGGAAAATGTGATTTGGTTGCCTAATCATGAA
* * *
50327 AAGGATAAAGATTATTTTAAGAATCCATGTTAGTTTCATTTGACATACGAACTCAAATTACAAGG
511 AAGGATAAAGATTATTATAAGAATCCATGTTTGTTTCATTTGACATACGAACTCAAATTATAAGG
*
50392 AATATCGTGGCAGGAAAAACTTTTCTTA
576 AATATCGTGGCA-GAAAAGCTTTTCTTA
* * * * *
50420 TATAA-CAAAAACATTAAGATCATGTATCCCAAAGAATAGACTGTGTTTTTGGAGATAACTATGA
1 TATAATC-AAAACATCAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCACTATGA
* * * **
50484 GAATCCTTCTTTGTCTCTTTTAAGGGACAAACCTTGATTTTAAAAAATTAGTGGAAAGAAAAGCA
65 GAATCCATC-TTATCTC--------GACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCA
*
50549 TTTCTTGCTAAAATCAAAGCATCAATATCATGCATCCCAATGAAGAGAGCGTGTTTTGGCTGCCT
121 TTTCTTGCTAAAATCAAAGCATCAATATCATGCATCCCAATGAAGAGAGC-TGTTTTGGCTGCAT
*
50614 AATCACAAAAAAAATGGAGATTATTACAAGAACCCATTTTTGTATTATTTGACGAATGAACTTTG
185 AATCACAAAAAAAATGGAGATTATTACAAGAATCCATTTTTGTATTATTTGACGAATGAACTTTG
* * * * * *
50679 CTTTAAGGAAATAAGTAGCAAGAAAAACTTTTCTTGCATATCCAATGTGTCCATATTATGCAACC
250 CTTTAAGGAAATAAGTAGCAAGAAAAAATTTTCTTGCATAACCAATGCGTCAATATTGTGCATCC
** * * * *
50744 CAATGAAGATAATGTGTTTATGGTGCCTAATCATTAAAATAATGGAGATTATTACGTAAATCCAT
315 CAATGAAGATAACATGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTACGTAAATCGAT
* *
50809 GTTTGTCTCATTTAGGGTATAAACTTTGATT-TCAAGGTAAACGATGGAGAAAAAAGCTTTTCTT
380 GTTTGTCTCATTTAAGGTATAAACTTTGATTCT-AAGGAAAACGATGGAGAAAAAAGCTTTTCTT
* * * * *
50873 ATGGAATCAAAGCTTTAATTTTGTGTATCCCAATAAGGAAAATGTGATTTGGTTTCCAAATCATG
444 ATGAAATCAAAGCTTTAATATCGTGTATCCCAATAAGGAAAATGTGATTTGGTTGCCTAATCATG
* * *
50938 AAAAGGTTAAAGATTATTATAAGAATCCATGTTTGTTTCATTTGACAAACAAACTCAAATTATAA
509 AAAAGGATAAAGATTATTATAAGAATCCATGTTTGTTTCATTTGACATACGAACTCAAATTATAA
* *
51003 GGAATATCATGGCCAAAAAAGCTTTTCTTA
574 GGAATATCGTGG-CAGAAAAGCTTTTCTTA
* **
51033 TATAATCAAAACATCAATATCATGTATCCTAATGAATAGAATGTGTTTTTGCTGATCACTATGAG
1 TATAATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCACTATGAG
**
51098 AATCCATCTTTATCACTTTTCAGGGACAAACTTTGATTTTAAAATTGTAGTGGAAAGAAAAGCAT
66 AATCCATC-TTAT--C---TC---GACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCAT
* * * *
51163 TTCTCG-TGAAAATCAAACCATCAACATCATGCATCCCAATGAAGAGAGCCTGTTTTGGCTTCAT
122 TTCTTGCT-AAAATCAAAGCATCAATATCATGCATCCCAATGAAGAGAG-CTGTTTTGGCTGCAT
* * *
51227 AATCAC--AAAAAATTGAGATTATTAGAAGAATCCATTTTTGTATTATTTGACGAATGAAATTTG
185 AATCACAAAAAAAATGGAGATTATTACAAGAATCCATTTTTGTATTATTTGACGAATGAACTTTG
* * * *
51290 CTTTAAAGGAAA-AAGTGGCAAGAAAAACTTTTCTTGCATAACCAATGCATCAAAATTGTGCATC
250 CTTT-AAGGAAATAAGTAGCAAGAAAAAATTTTCTTGCATAACCAATGCGTCAATATTGTGCATC
* * ** *
51354 CCAAAGATGATAATGTGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTATGTAAATCTG
314 CCAATGAAGATAACATGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTACGTAAATC-G
* ** * * * *
51419 -TGATTGTCTTTTTTAAGGT-TCAAACATTGATTTTAAGGAAAACGGTGGAGAATAAAGCTTTTC
378 ATGTTTGTCTCATTTAAGGTAT-AAACTTTGATTCTAAGGAAAACGATGGAGAAAAAAGCTTTTC
* * * * * * *
51482 TTATGAAATCAAAGCATTAATATCATGTATCCCAATATGGAGAATGCG-TTTTGTTGCTTAATCA
442 TTATGAAATCAAAGCTTTAATATCGTGTATCCCAATAAGGAAAATGTGATTTGGTTGCCTAATCA
* * * * *
51546 TGGAAAGAATGAAGATAATTATAAGAATTCATGTTTGTTTCATTTGACATACGAACTCAAATTAT
507 TGAAAAGGATAAAGATTATTATAAGAATCCATGTTTGTTTCATTTGACATACGAACTCAAATTAT
*
51611 AAGGAATATTGTGGCTAGAAAAGCTTTTCTTA
572 AAGGAATATCGTGGC-AGAAAAGCTTTTCTTA
* * * *
51643 TATAATCAAAACATTAATATCATGTATCCCACTGAATAAAATGTGTTTTTGGAGATCATTATGAG
1 TATAATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCACTATGAG
* *
51708 AATCCATC-T-T-TC-ACAAACATTGATTTTAAAAAGGTAGTGGAACGAAAAGCATTTCTTGCTA
66 AATCCATCTTATCTCGACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCATTTCTTGCTA
* * * *
51769 AAATCAAAGCTTCAATATCATGCATCCCAATGAAGAGAGCATGTTTTGGCTACTTAATCGCAAAA
131 AAATCAAAGCATCAATATCATGCATCCCAATGAAGAGAGC-TGTTTTGGCTGCATAATCACAAAA
* * * * *
51834 AAAAAGGACATTATTACAAGAATCCATTTTTCTATTATTTGATGAATGAACTTTCCTTTAAGGAA
195 AAAATGGAGATTATTACAAGAATCCATTTTTGTATTATTTGACGAATGAACTTTGCTTTAAGGAA
*
51899 ATAGGTAGCAAGAAAAAATTTTCTTGCATAACCAATGCGTCAATATTGTGCATCCCAATGAAGAT
260 ATAAGTAGCAAGAAAAAATTTTCTTGCATAACCAATGCGTCAATATTGTGCATCCCAATGAAGAT
* * *
51964 AACATGTTTATGGTGCCCAATCTTTGAAAGAATAGAGATTATTATGTAAATCGATGTTTGTCTCA
325 AACATGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTACGTAAATCGATGTTTGTCTCA
* *
52029 TTTAAGCTAAAAACTTTGATTCTAAGGAAAACGATGGAGAAAAAAGCTTTTCTTATGAAATCAAA
390 TTTAAGGTATAAACTTTGATTCTAAGGAAAACGATGGAGAAAAAAGCTTTTCTTATGAAATCAAA
* * *
52094 GCTTTAAT-TGCGTGTATTCCAATAAGGAAAATGTGATTTGGTTTCCTAATCATGAAAAGGATGA
455 GCTTTAATAT-CGTGTATCCCAATAAGGAAAATGTGATTTGGTTGCCTAATCATGAAAAGGATAA
*
52158 AGATTATTATAAGAATCCTTGTTTG
519 AGATTATTATAAGAATCCATGTTTG
52183 CTTTTGTAAG
Statistics
Matches: 1527, Mismatches: 196, Indels: 79
0.85 0.11 0.04
Matches are distributed among these distances:
596 1 0.00
597 95 0.06
598 11 0.01
599 404 0.26
600 45 0.03
601 4 0.00
602 27 0.02
603 101 0.07
607 1 0.00
608 3 0.00
609 4 0.00
610 247 0.16
611 313 0.20
612 9 0.01
613 255 0.17
614 4 0.00
615 1 0.00
618 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (602 bp):
TATAATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCACTATGAG
AATCCATCTTATCTCGACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCATTTCTTGCTA
AAATCAAAGCATCAATATCATGCATCCCAATGAAGAGAGCTGTTTTGGCTGCATAATCACAAAAA
AAATGGAGATTATTACAAGAATCCATTTTTGTATTATTTGACGAATGAACTTTGCTTTAAGGAAA
TAAGTAGCAAGAAAAAATTTTCTTGCATAACCAATGCGTCAATATTGTGCATCCCAATGAAGATA
ACATGTTTATGGTGCCCAATCATTGAAAGAATGGAGATTATTACGTAAATCGATGTTTGTCTCAT
TTAAGGTATAAACTTTGATTCTAAGGAAAACGATGGAGAAAAAAGCTTTTCTTATGAAATCAAAG
CTTTAATATCGTGTATCCCAATAAGGAAAATGTGATTTGGTTGCCTAATCATGAAAAGGATAAAG
ATTATTATAAGAATCCATGTTTGTTTCATTTGACATACGAACTCAAATTATAAGGAATATCGTGG
CAGAAAAGCTTTTCTTA
Found at i:53111 original size:32 final size:33
Alignment explanation
Indices: 53069--53132 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
53059 CATTTCATGG
*
53069 TGTATTGATACAAAG-AACATGTATCAATACAA
1 TGTATCGATACAAAGCAACATGTATCAATACAA
* *
53101 TGTATCGATACTAAGCAATATGTATCAATACA
1 TGTATCGATACAAAGCAACATGTATCAATACA
53133 TCTGGGTGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (33 bp):
TGTATCGATACAAAGCAACATGTATCAATACAA
Found at i:59260 original size:3 final size:3
Alignment explanation
Indices: 59252--59286 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
59242 GTCAACCTCT
* *
59252 TCA TCA TCA TCA TCA TCA TCT TCT TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
59287 TTTGATGGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.26, C:0.34, G:0.00, T:0.40
Consensus pattern (3 bp):
TCA
Found at i:59288 original size:12 final size:12
Alignment explanation
Indices: 59249--59288 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
59239 CAAGTCAACC
59249 TCTTCATCATCA
1 TCTTCATCATCA
* *
59261 TCATCATCATCT
1 TCTTCATCATCA
59273 TCTTCATCATCA
1 TCTTCATCATCA
59285 TCTT
1 TCTT
59289 TGATGGTTGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.23, C:0.33, G:0.00, T:0.45
Consensus pattern (12 bp):
TCTTCATCATCA
Found at i:62485 original size:612 final size:610
Alignment explanation
Indices: 60119--63409 Score: 4665
Period size: 610 Copynumber: 5.4 Consensus size: 610
60109 AATCTTAATA
* * *
60119 GTTTTATTTGACATACAAACTCAAATTATAAGGAATATCGTGGCAAGAAAAGCTTTTCTTATATA
1 GTTTCATTTGACATACGAACTCAAATTATAAGGAAAATCGTGGCAAGAAAAGCTTTTCTTATATA
* * * *
60184 ATCAAAATATTAATATCATGTATTCCAATTAATAGAATGTGTTTTTGGAGATCATTATGAGAATC
66 ATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCATTATGAGAATC
*
60249 CATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGTAGTTGAAAGTAAAA-CATTTC
131 CATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGTAGTGGAAAG-AAAAGCATTTC
** * * *
60313 TTACGAAAATAAAAGCATCAATATCATGCATCCTAATGAGGAGAGCGTGTTTTGACTGCCTAATC
195 TTGTGAAAATCAAAGCATCAATATCATGCATCCCAATGAGGAGAGCGTGTTTTGGCTGCCTAATC
* * *
60378 ACCAAAAAAAATGGAGATTATTACAAGAATCAATATTTGTATTATTT-AGCGAATGAACTTTTCT
260 A-C-AAAAAAATGGAGATTATTACAAGAATCCATTTTTGTATTATTTGA-CGAATGAACTTTGCT
*
60442 TTAAGGAAATAAGTGGCAAGAAAAACTTTTCTTACATAACCAATGCATCAATA-TGTGTATCCCA
322 TTAAGGAAATAAGTAGCAAGAAAAACTTTTCTTACATAACCAATGCATCAATATTGTGTATCCCA
*
60506 ACGAAGATAACATGTTTATGGTGCCCAAT-AGTTGAAAGAATGGAGATTATTGCATAAATCGATG
387 ATGAAGATAACATGTTTATGGTGCCCAATCA-TTGAAAGAAT-GAGATTATTGCATAAATCGATG
*
60570 TTTTTCTCATTTAAGGTATAAACTTTGATTCTAAGGAAAATGCTGGAGAAAAAAGCTTTTCTTAT
450 TTTGTCTCATTTAAGGTATAAACTTTGATTCTAAGGAAAATGCTGGAGAAAAAAGCTTTTCTTAT
* *
60635 GAAATCGAAGTATTAATATCATGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAATCATGAA
515 GAAATCAAAGCATTAATATCATGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAATCATG-A
60700 AATAATGAAGATTATTATAAGAATCCATGTTT
579 AATAATGAAGATTATTATAAGAATCCATGTTT
* *** *
60732 GTTTCATTTGACATATGAAAAAAAATTATAAGGAAAATCGTGGCCAGAAAAGCTTTTCTTATATA
1 GTTTCATTTGACATACGAACTCAAATTATAAGGAAAATCGTGGCAAGAAAAGCTTTTCTTATATA
* * * * * *
60797 AGCAAAACATCAATATCATGAATCCCAATGAGTAGAATTTGTTTTAGGAGATCATTATAAGAATC
66 ATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCATTATGAGAATC
* * * *
60862 CATCTTTGTCTCTTTTAAGGGAAAAACTTAGATTTAAAAAAGGTAGAGGAAAGAAAAGCATTTCT
131 CATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCATTTCT
* **
60927 TGTGAAAATCAAAGCATCAATATCATGCATCCCAATGA--AGAGGGTGCATTTTGGCTATCTAAT
196 TGTGAAAATCAAAGCATCAATATCATGCATCCCAATGAGGAGAGCGTG--TTTTGGCTGCCTAAT
* *
60990 CA-TAAAAAATGGAGATTATTACAAGAACCCATTTTTGTATTATTTGACGAATGAACTTTGCTTT
259 CACAAAAAAATGGAGATTATTACAAGAATCCATTTTTGTATTATTTGACGAATGAACTTTGCTTT
* * *
61054 AAGGAAATAAGTAGCAAGAAACACTTTTCTTGCATAACCAATG-GTCAATATTGTGTATCCCAAT
324 AAGGAAATAAGTAGCAAGAAAAACTTTTCTTACATAACCAATGCATCAATATTGTGTATCCCAAT
* * * *** *
61118 AAAGATAGCATGTTTATGGTGCCCAATCACTGAAAGAATAGAGATTATTATGTAAATCGATATTT
389 GAAGATAACATGTTTATGGTGCCCAATCATTGAAAGAAT-GAGATTATTGCATAAATCGATGTTT
* * ***
61183 GTCTCATTTCAGGTATAAACTTTGATTATAAGGAAAACAATGGAGAAAAAAGCTTTTCTTATGAA
453 GTCTCATTTAAGGTATAAACTTTGATTCTAAGGAAAATGCTGGAGAAAAAAGCTTTTCTTATGAA
* * * * * *
61248 AACAAAGCTTTAATATCATGTATACCAACAAGGAAAATGTGTTTTGGTAGCCTAATCATGAAA-A
518 ATCAAAGCATTAATATCATGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAATCATGAAATA
*
61312 GGATGAATATTATTATAAGAATCCATGTTT
583 --ATGAAGATTATTATAAGAATCCATGTTT
* * * * *
61342 GGTTT-ATTGGACATACAAACTCAAATTATAAGGAATATTGTGGCAAGAAAAGTTTTTCTTATAT
1 -GTTTCATTTGACATACGAACTCAAATTATAAGGAAAATCGTGGCAAGAAAAGCTTTTCTTATAT
* * * * *
61406 AATGAAAATATTAATATCATGTAGCCCAATGAATAGAATGTGTTTTTGGAGATCATTATAAGAAT
65 AATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCATTATGAGAAT
* *
61471 CCATCTCTGTCTCTTTTAAGGAACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCATTTC
130 CCATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCATTTC
*
61536 TTGCT-AAAATCAAAGCATCAATATAATGCATCCCAATGAGGAGAGCGTGTTTTGGCTGCCTAAT
195 TTG-TGAAAATCAAAGCATCAATATCATGCATCCCAATGAGGAGAGCGTGTTTTGGCTGCCTAAT
* *
61600 CACAAGAAAAAAGTGGAGATTATTACAAGAATCCTTTTTTGTATTATTTGACGAATGGACTTTGC
259 CAC-A-AAAAAA-TGGAGATTATTACAAGAATCCATTTTTGTATTATTTGACGAATGAACTTTGC
* * *
61665 TTTAAGGAAATAAGTAGCAAGGAAAACTTTTCTTGCTTAACCAATGCATCAATATTGTGTATCCC
321 TTTAAGGAAATAAGTAGCAAGAAAAACTTTTCTTACATAACCAATGCATCAATATTGTGTATCCC
*
61730 AATGAAGATAACATGTTTATGGTGCCCAATCATTGAAAGAGTGATGATTATTGCATAAATCCG-T
386 AATGAAGATAACATGTTTATGGTGCCCAATCATTGAAAGAATGA-GATTATTGCATAAAT-CGAT
* * *
61794 GTTTGTCTCGTTTAGGGTATAAACTTTGATTCTAAGGAAAATGCTAGAGAAAAAAGCTTTTCTTA
449 GTTTGTCTCATTTAAGGTATAAACTTTGATTCTAAGGAAAATGCTGGAGAAAAAAGCTTTTCTTA
** *
61859 TGAAATCAAAGCATTAATATCACATATCCCAATAAGGAGAATGTCTTTTGGTTGCCTAATCATGA
514 TGAAATCAAAGCATTAATATCATGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAATCATGA
* *
61924 AATATTGAAGATTATTATAAGAATTCATGTTT
579 AATAATGAAGATTATTATAAGAATCCATGTTT
* * * * * * *
61956 GTTTCTTTTGACATACGAATTCAAATAATAAGGAAAACCATGGCAAGAAAAGCTTTTCTAATGTA
1 GTTTCATTTGACATACGAACTCAAATTATAAGGAAAATCGTGGCAAGAAAAGCTTTTCTTATATA
* *
62021 ATCAAAACATTAATATCATGTATCCTAATGAATAGAATGTGTTTTTGGAGATCATTATGAGAATC
66 ATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCATTATGAGAATC
* * * ** *
62086 TATCTTTGTCTCTTTTAAGGGACAAACTTCGACTTTAAAAAATTAGTGGAAAGAAAAACATTTCT
131 CATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCATTTCT
* ** *
62151 TGTGAAAATCAAAGCATCACTATCATGCATCCCAATGAGGAGATTGTGTTTTGGCTGCCCAATCA
196 TGTGAAAATCAAAGCATCAATATCATGCATCCCAATGAGGAGAGCGTGTTTTGGCTGCCTAATCA
* * *
62216 CAAAAAAAGTGGAGATTATTACAAGAATCCATTTTTGTATTATTTAACGAATGAACTTTTCTTGA
261 CAAAAAAA-TGGAGATTATTACAAGAATCCATTTTTGTATTATTTGACGAATGAACTTTGCTTTA
* * * *
62281 AGGAAATAAGTGGCTAGAAAAACTTTTCTTACGTAATCAATGCATCAATATTGTGTATCCCAATG
325 AGGAAATAAGTAGCAAGAAAAACTTTTCTTACATAACCAATGCATCAATATTGTGTATCCCAATG
* *
62346 AAGATAACATGTTTATGGTGCCCAATCATTGAAAGAATGCAGATTATTGCATAAATCAAGGTTTG
390 AAGATAACATGTTTATGGTGCCCAATCATTGAAAGAATG-AGATTATTGCATAAATCGATGTTTG
* * *
62411 TCTCATTTAATGTATAAACTTTGATTCTAAGGAAAACGCTGGAGAAAAAAACTTTTCTTATGAAA
454 TCTCATTTAAGGTATAAACTTTGATTCTAAGGAAAATGCTGGAGAAAAAAGCTTTTCTTATGAAA
* *
62476 TCAAAGCATTAATATCATGTATCCCAATAAGGAGAATGTATTTTGGTTGCCTAACCATGAAAATA
519 TCAAAGCATTAATATCATGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAATCATG-AAATA
* *
62541 GTGAAGATTATTATAAGAATCTATG-TT
583 ATGAAGATTATTATAAGAATCCATGTTT
* * * *
62568 GTTTCATTTGACATACGAACTCAAATTAAAATGAAAATCATGGTAAGAAAAGCTTTTCTTATATA
1 GTTTCATTTGACATACGAACTCAAATTATAAGGAAAATCGTGGCAAGAAAAGCTTTTCTTATATA
*
62633 ATCAAAATCATCAATATCATGTATCCCAATGAATAGAATGTGTTTTCGGAGATCATTATGAGAAT
66 ATCAAAA-CATCAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCATTATGAGAAT
* * *
62698 CCA--TATGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGTTAGAGGAAAGAAAAGCATTTC
130 CCATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCATTTC
* * * * *
62761 TTG-AAAATATCAAGGCATCAATATCATGTATCCCAATAAGGAGAGCGTGTTTTGGCTACCTAAT
195 TTGTGAAA-ATCAAAGCATCAATATCATGCATCCCAATGAGGAGAGCGTGTTTTGGCTGCCTAAT
*
62825 CACAAAAAAATGGAGATTATTACAAGAATCCATTTTTGTATTATTTGACGAATGAACCTTGCTTT
259 CACAAAAAAATGGAGATTATTACAAGAATCCATTTTTGTATTATTTGACGAATGAACTTTGCTTT
* * * ** *
62890 AAGGAAATAAGTAGCAAGAAAAACTTTTCTTCCATAATCAATTCATCAATATTGTAAATCCCAAA
324 AAGGAAATAAGTAGCAAGAAAAACTTTTCTTACATAACCAATGCATCAATATTGTGTATCCCAAT
* * * *
62955 AAAGATAACGTGTTTATGGTGCCCAATCATTGAAAGAATAGAGATTATTGCATAAATCTATGATT
389 GAAGATAACATGTTTATGGTGCCCAATCATTGAAAGAAT-GAGATTATTGCATAAATCGATGTTT
** * * * * *
63020 GTCTCATTTAAGGTATAAACTTTGATTCTTTGGTAAATGATGAAGAAAAAAGCATTTCTTAAGAA
453 GTCTCATTTAAGGTATAAACTTTGATTCTAAGGAAAATGCTGGAGAAAAAAGCTTTTCTTATGAA
* ** * *
63085 ATCAAAGCATTAATTTTGTGTATCCCAATAAGGAAAATGTGTTTTGGTTGCCTAATCAT-ATACT
518 ATCAAAGCATTAATATCATGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAATCATGA-AAT
*
63149 AATGAAGATTATTATAAGAATCCACGTTT
582 AATGAAGATTATTATAAGAATCCATGTTT
*
63178 GTTTCATTTGACATACGAACTCAAATTATAAAGAAAAATCGTGGCAAGAAAAGCTTTTCTTATAT
1 GTTTCATTTGACATACGAACTCAAATTAT-AAGGAAAATCGTGGCAAGAAAAGCTTTTCTTATAT
* * * * *
63243 AATCAAAATATCAACATCATGTATCCAAATGAATAGAATGTGTTTTCGTAGATCATTATGAGAAT
65 AATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCATTATGAGAAT
*
63308 CCATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGTGGAT-GAAAGAAAAGCATTT
130 CCATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGTAG-TGGAAAGAAAAGCATTT
* *
63372 CTTGCGAAAATCAAAGCATCAATATCATGCATCGCAAT
194 CTTGTGAAAATCAAAGCATCAATATCATGCATCCCAAT
63410 TGATGAAAAC
Statistics
Matches: 2375, Mismatches: 268, Indels: 71
0.88 0.10 0.03
Matches are distributed among these distances:
608 2 0.00
609 34 0.01
610 878 0.37
611 170 0.07
612 449 0.19
613 314 0.13
614 343 0.14
615 182 0.08
616 3 0.00
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (610 bp):
GTTTCATTTGACATACGAACTCAAATTATAAGGAAAATCGTGGCAAGAAAAGCTTTTCTTATATA
ATCAAAACATCAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCATTATGAGAATC
CATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTAAAAAGGTAGTGGAAAGAAAAGCATTTCT
TGTGAAAATCAAAGCATCAATATCATGCATCCCAATGAGGAGAGCGTGTTTTGGCTGCCTAATCA
CAAAAAAATGGAGATTATTACAAGAATCCATTTTTGTATTATTTGACGAATGAACTTTGCTTTAA
GGAAATAAGTAGCAAGAAAAACTTTTCTTACATAACCAATGCATCAATATTGTGTATCCCAATGA
AGATAACATGTTTATGGTGCCCAATCATTGAAAGAATGAGATTATTGCATAAATCGATGTTTGTC
TCATTTAAGGTATAAACTTTGATTCTAAGGAAAATGCTGGAGAAAAAAGCTTTTCTTATGAAATC
AAAGCATTAATATCATGTATCCCAATAAGGAGAATGTGTTTTGGTTGCCTAATCATGAAATAATG
AAGATTATTATAAGAATCCATGTTT
Found at i:65050 original size:12 final size:11
Alignment explanation
Indices: 65031--65106 Score: 70
Period size: 12 Copynumber: 6.9 Consensus size: 11
65021 AGAGAAAGAA
65031 GAGATAGGAGG
1 GAGATAGGAGG
65042 GATGATAGGAGG
1 GA-GATAGGAGG
*
65054 AGAGATA--AGA
1 -GAGATAGGAGG
*
65064 GAGATAGTA--
1 GAGATAGGAGG
65073 GAGATAGGAGG
1 GAGATAGGAGG
65084 GATGATAGGAGG
1 GA-GATAGGAGG
65096 AGAGATAGGAG
1 -GAGATAGGAG
65107 AGAAAATAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
9 14 0.25
10 2 0.04
11 5 0.09
12 30 0.55
13 4 0.07
ACGTcount: A:0.41, C:0.00, G:0.46, T:0.13
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:65077 original size:42 final size:42
Alignment explanation
Indices: 65021--65139 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
65011 TAGCCCTCAA
*
65021 AGAGAAAGAAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
1 AGAGAAAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
* *
65063 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGAAAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
* * * *
65105 AGAGAAAATAAAGAGAGGAGGGATGATAGAAGGAG
1 AGAGAAAGTAGAGATAGGAGGGATGATAGGAGGAG
65140 GAGAGAATAA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.46, C:0.00, G:0.43, T:0.11
Consensus pattern (42 bp):
AGAGAAAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
Found at i:65107 original size:9 final size:9
Alignment explanation
Indices: 65051--65109 Score: 52
Period size: 9 Copynumber: 6.9 Consensus size: 9
65041 GGATGATAGG
65051 AGGAGAGAT
1 AGGAGAGAT
*
65060 AAGAGAGAT
1 AGGAGAGAT
*
65069 AGTAGAGAT
1 AGGAGAGAT
*
65078 AGGAGGGAT
1 AGGAGAGAT
* *
65087 --GATAG-G
1 AGGAGAGAT
65093 AGGAGAGAT
1 AGGAGAGAT
65102 AGGAGAGA
1 AGGAGAGA
65110 AAATAAAGAG
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.11
9 30 0.81
ACGTcount: A:0.44, C:0.00, G:0.44, T:0.12
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:68425 original size:12 final size:12
Alignment explanation
Indices: 68410--68443 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
68400 TCTATTATCT
68410 CTCCTATCTCCC
1 CTCCTATCTCCC
68422 CTCCTATCAT-CC
1 CTCCTATC-TCCC
68434 CTCCTATCTC
1 CTCCTATCTC
68444 TTTGAGGGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 1 0.05
12 18 0.90
13 1 0.05
ACGTcount: A:0.12, C:0.53, G:0.00, T:0.35
Consensus pattern (12 bp):
CTCCTATCTCCC
Found at i:68437 original size:24 final size:25
Alignment explanation
Indices: 68392--68443 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
68382 CCTGTCATCC
* * *
68392 CTCCTCTCTCTATTATCTCTCCTAT
1 CTCCCCTCTCTATCATCCCTCCTAT
68417 CTCCCCTC-CTATCATCCCTCCTAT
1 CTCCCCTCTCTATCATCCCTCCTAT
68441 CTC
1 CTC
68444 TTTGAGGGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.12, C:0.48, G:0.00, T:0.40
Consensus pattern (25 bp):
CTCCCCTCTCTATCATCCCTCCTAT
Found at i:71173 original size:609 final size:610
Alignment explanation
Indices: 70053--73153 Score: 3895
Period size: 609 Copynumber: 5.1 Consensus size: 610
70043 GTTTTCATCA
* * * *
70053 CAAATCTTTAAAAGAATAGAGATTATTACATAAATCCATATTTGTCTCATTTAAGACGTAAACTT
1 CAAATCTTTAAAAGAATAGAGATTATTACGTAAATCCATGTTTGTCTCATTTAAGGCATAAACTT
* *
70118 TGATTCTAAGGAAAACGATGGAG-AAAAAACTTTGCTTATGAAAACAAAGCATTAATATCGTGTA
66 TGATTCTAAGGAAAACGATGGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTAATATCGTGTA
* * *
70182 TCCCAATAA-GAAAATGTGTTTTGGTTGCCTTATCACT-AAAAGGATGAAGATTATTGTAAGAAT
131 TCCCAATAAGGAAAATATGTTTTGGTTGCCTAATCA-TGAAAAGGATGAAGATTATTATAAGAAT
* * * * * * *
70245 CCATGTTAGATTCATTAGACATACGAACTCAAATTATCAGGAAAACCACGGTAAGAAAAGCTTTT
195 CCATGTTAGTTTCATTTGACATACGAACTCAAATTATAAGGAATATCATGGCAAGAAAAGCTTTT
* * * * * * *
70310 CTTATATAATCAAAACATCAATATTATTTTTCCTAATAAATAGAATATGTTTTTGGAGATCATTA
260 CTTATATAATCAAAACATTAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCATTA
* * * *
70375 TGAGAATCCATCTTTGTCT-TCTTTATGGGAAAAACTTTGATTTTAAAGAGGTAGTGGAAAGAAA
325 TGAGAATCCATCTTTGTCTCT-TTTAAGGGACAAACATTGATTTTAAAAAGGTAGTGGAAAGAAA
* * *
70439 AGCATTTCTTGCTAAAATCGAAGCATCAGTATCGTGCATCCCAATGAA-GAGAGCGTGTTTTGGC
389 AGCATTTCTTGCTAAAATCAAAGCATCAATATCATGCATCCCAAT-AAGGAGAGCGTGTTTTGGC
* * * * *
70503 CACGTAATCATAAAAATAGAGATTATTACAAGAATCCATTTTTGTATTA-ATGACAAATGAACTT
453 TACCTAATCAAAAAAATGGAGATTATTACAAGAATCCATTTTTGTATTATTTGACAAATGAACTT
* * *
70567 TGCTTTAAGGAAATAAGTGGCAAGAAAAGCTTTTCTTGCATAACCAATGCATGAATATTGTGCAT
518 TGCTTTAAGGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATGCGTCAATATTGTGCAT
*
70632 CTCAAAGACGATAACGTGTTTATGGTGC
583 CCCAAAGACGATAACGTGTTTATGGTGC
* *
70660 TAAATCTTTAAAAGAA-AGGAGATTATTACGTAAATCCATGTTTGTCTCATTTAAGGCGTAAACT
1 CAAATCTTTAAAAGAATA-GAGATTATTACGTAAATCCATGTTTGTCTCATTTAAGGCATAAACT
* * * *
70724 TTGCTTCTAAGAAAAACGGTGGAGAAAAAAACTTTTCTTATGAATTCAAAGCATTAATATCGTGT
65 TTGATTCTAAGGAAAACGATGGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTAATATCGTGT
* *
70789 ATCCCAATAAGAAAAATTTGTTTTGGTTGCCTAATCATGAAAAGGATGAAGATTATTATAAGAAT
130 ATCCCAATAAGGAAAATATGTTTTGGTTGCCTAATCATGAAAAGGATGAAGATTATTATAAGAAT
* * * *
70854 CCATGTTAGTTTCATTTGACATAAGAAC-CTAAATTATAAGGAATATCGTGGCAGGAAAAGCTAT
195 CCATGTTAGTTTCATTTGACATACGAACTC-AAATTATAAGGAATATCATGGCAAGAAAAGCTTT
* *
70918 TCTTGTATAATCAAAACATTAATATCATGTATCCCAATGAATAGAAAGTGTTTTTGGAGATCATT
259 TCTTATATAATCAAAACATTAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCATT
* * * *
70983 ATGAGAATCCATTTTTGTCT-TTTCTAAGGGACAAACATTGACTTTAAAAATGTTGTGGAAAGAA
324 ATGAGAATCCATCTTTGTCTCTTT-TAAGGGACAAACATTGATTTTAAAAAGGTAGTGGAAAGAA
* * * *
71047 AAGCATTTCTTGCTAAAATCAAAGCATTAATGTCATGTAT-CCAATAAGGAGAGCGTGGTTTGGC
388 AAGCATTTCTTGCTAAAATCAAAGCATCAATATCATGCATCCCAATAAGGAGAGCGTGTTTTGGC
* * * *
71111 TGCCTAATAAAAAAAATGGAAATTATTACAAGAATCCATTTTTGTATTATTTGACGAATGAACTT
453 TACCTAATCAAAAAAATGGAGATTATTACAAGAATCCATTTTTGTATTATTTGACAAATGAACTT
** * *
71176 TGCTTTAAGGAAATAAGCAGCATGAAAAACTTTTCTTGCATAACCAGTGCGTCAATATTGTGCAT
518 TGCTTTAAGGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATGCGTCAATATTGTGCAT
* *
71241 CCCAAAG-CTAATAATGTGTTTATGGTGC
583 CCCAAAGAC-GATAACGTGTTTATGGTGC
* * *
71269 CCAATCATTAAAAGAATAGAGATTATTACGTAAATCCATGTTTGTCTCATTTAAGGTATAAACTT
1 CAAATCTTTAAAAGAATAGAGATTATTACGTAAATCCATGTTTGTCTCATTTAAGGCATAAACTT
* * * *
71334 TGATTCTAAGGAAAACGCTGGAGAAAGAAGCTTTTCTTATGAAATCAAAGCATTAATATCATGTA
66 TGATTCTAAGGAAAACGATGGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTAATATCGTGTA
* * * ** * *
71399 TCCCAATAAGGAGAATATATTTTGGTTGTCTAATCATGAAAATAATTAAGATTATTATAAGAATT
131 TCCCAATAAGGAAAATATGTTTTGGTTGCCTAATCATGAAAAGGATGAAGATTATTATAAGAATC
* * * * * *
71464 TATGTTTGTTTCATTTGACATACGAACTTAAATTATAGGGAA-ACCCATGCCAAGAAAAGCTTTT
196 CATGTTAGTTTCATTTGACATACGAACTCAAATTATAAGGAATA-TCATGGCAAGAAAAGCTTTT
* * * * ** *
71528 CTTATATAGTCAAAACATCAATATCATGTATCGCATTGAATAGAATGTGTTTTTCAAGATCATAA
260 CTTATATAATCAAAACATTAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCATTA
* *
71593 TGAGAAT-CATCTTTGTCTCTTTTAAGGGAAAAACTTTGATTTTAAAAAGGTCA-TGGAAAGAAA
325 TGAGAATCCATCTTTGTCTCTTTTAAGGGACAAACATTGATTTTAAAAAGGT-AGTGGAAAGAAA
* * * *
71656 AGCATTTCTTGCTAAAATCGAACCACCAGTATCATGCATCCCAATGAA-GAGAGCGTGTTTTGG-
389 AGCATTTCTTGCTAAAATCAAAGCATCAATATCATGCATCCCAAT-AAGGAGAGCGTGTTTTGGC
* * * * *
71719 TCACGTAATCACAAAAATAGAGATTTTTACAAGAATCAATTTTTGTATTATTTGACAAATGAACT
453 T-ACCTAATCAAAAAAATGGAGATTATTACAAGAATCCATTTTTGTATTATTTGACAAATGAACT
* * * * * *
71784 TTGCTTTAAGGAAAGAAGTGGTAAG-AAAACATTTTTTTACATATCCAATGCATCAATATTGTGC
517 TTGCTTTAAGGAAATAAGTGGCAAGAAAAAC-TTTTCTTGCATAACCAATGCGTCAATATTGTGC
* * * *
71848 ATCTCAATGAAGATAACGTGTATATGGTGC
581 ATCCCAAAGACGATAACGTGTTTATGGTGC
* * *
71878 CAAATCTTTAAAAGAA-AGGAGATTGTTATGTAAATCCATGTTTGACTCATTTAAGGCATAAACT
1 CAAATCTTTAAAAGAATA-GAGATTATTACGTAAATCCATGTTTGTCTCATTTAAGGCATAAACT
* *
71942 ATGATT-TAAAGGAAAACGGTGGAG--AAAAACTTTTCTTATGAAATCAAAGCATTAATATCGTG
65 TTGATTCT-AAGGAAAACGATGGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTAATATCGTG
* * * * *
72004 TATCCTAATAAGGAAAATTTGTTTTGGCTGCCAAATCATGAAAAGGATGAAGAATATTATAAGAA
129 TATCCCAATAAGGAAAATATGTTTTGGTTGCCTAATCATGAAAAGGATGAAGATTATTATAAGAA
* * * *
72069 TCAATGTTAGTTTCATTTGACATACGAGCTCAAATTATAAGGAATATCATGGTAGGAAAAGCTAT
194 TCCATGTTAGTTTCATTTGACATACGAACTCAAATTATAAGGAATATCATGGCAAGAAAAGCT-T
* *
72134 TT-TTGTATACTCAAAACATTAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCAT
258 TTCTTATATAATCAAAACATTAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCAT
* * * * *
72198 TATGAGAATCAATCTTTGTCTCTTTTAAGGGACATACATTGATTTTAAAAAGGAAATGGAAAAAA
323 TATGAGAATCCATCTTTGTCTCTTTTAAGGGACAAACATTGATTTTAAAAAGGTAGTGG-AAAGA
* * * * *
72263 AAAACAATTCTTGCTAAAATCAAAGCATCAATACCATGTATCCCAATAAGGAGACCGTGTTTTGG
387 AAAGCATTTCTTGCTAAAATCAAAGCATCAATATCATGCATCCCAATAAGGAGAGCGTGTTTTGG
* * * *
72328 CTACCTAATCTAAAAAATGGAGATTATTACTAGAATCTATTTTTGTATTATTTGACAAATAAACT
452 CTACCTAATCAAAAAAATGGAGATTATTACAAGAATCCATTTTTGTATTATTTGACAAATGAACT
* * * * * ** * * *
72393 TCGCATTAAGGAAATAAGTAGCAATAAAAACTTTTCTTGCGTAACCGGTGTGTAAATATTGTACA
517 TTGCTTTAAGGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATGCGTCAATATTGTGCA
* *
72458 TCCCAAAG-CTGAGAACATGTTTATGGTG-
582 TCCCAAAGAC-GATAACGTGTTTATGGTGC
* * * *
72486 CACAATCATTGAAAGAATAGAGATTATTATGTAAATCCATGTTTGTCTCATTTAAGGTATAAACT
1 CA-AATCTTTAAAAGAATAGAGATTATTACGTAAATCCATGTTTGTCTCATTTAAGGCATAAACT
* * * * *
72551 TTGATTCTATGGAAAACAATGGAGAAAGAAGCTTTTCTTATGAAAACAAAGCATTAATATCGTGT
65 TTGATTCTAAGGAAAACGATGGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTAATATCGTGT
* * * *
72616 ATCTCAATAAGGAAAACATGTTTTGGTTGCCTAATCGTGAAACGGATGAAGATTATTATAAGAAT
130 ATCCCAATAAGGAAAATATGTTTTGGTTGCCTAATCATGAAAAGGATGAAGATTATTATAAGAAT
* * * * *
72681 CCTTGTTAGTTTCATTGGACATATGAACTCAAATTATAAGGAATATCGTGGCAAGAAAAACTTTT
195 CCATGTTAGTTTCATTTGACATACGAACTCAAATTATAAGGAATATCATGGCAAGAAAAGCTTTT
* * *
72746 CTTATATAATCAAAACACTAATATCATGTATCCCGATGAATAGAATGCGGTTTTTTGGAGATCAT
260 CTTATATAATCAAAACATTAATATCATGTATCCCAATGAATAGAATG-TG-TTTTTGGAGATCAT
*
72811 TATGAGAATCCATC--TGTCTCTTTTAAGGGACAAACATTGATTTTAAAAAGGAAGTGGAAAG-A
323 TATGAGAATCCATCTTTGTCTCTTTTAAGGGACAAACATTGATTTTAAAAAGGTAGTGGAAAGAA
* * * *
72873 AAGCATTTCTTGCTAAAATCAAAGCACCAATATCATGCATCCCAATGAGGAGAGCATGTTTTGAC
388 AAGCATTTCTTGCTAAAATCAAAGCATCAATATCATGCATCCCAATAAGGAGAGCGTGTTTTGGC
* * * * *
72938 TGCCTAATTATAGAAAAAAAGTGGAAATTATTGCAAGAATCCAATTTTGTATTATTTGACAAATG
453 TACCT-A--AT-CAAAAAAA-TGGAGATTATTACAAGAATCCATTTTTGTATTATTTGACAAATG
* * * * *
73003 AAGTTTACTTTAAGGAAATAAGTGGCAAGAAAAACTTTTCTTACAAAACTAATGCGTCAATATTG
513 AACTTTGCTTTAAGGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATGCGTCAATATTG
* ** *
73068 TGAATCCCAGTGAAGATAACGTG-TTATGGTGC
578 TGCATCCCAAAGACGATAACGTGTTTATGGTGC
* * * * *
73100 CCAATCTTTGAAAGAAT-GAAGATTATTAC-AAGAATTCATGTTTGTTTCATTTAA
1 CAAATCTTTAAAAGAATAG-AGATTATTACGTA-AATCCATGTTTGTCTCATTTAA
73154 CATACCAACT
Statistics
Matches: 2131, Mismatches: 316, Indels: 88
0.84 0.12 0.03
Matches are distributed among these distances:
606 1 0.00
607 285 0.13
608 250 0.12
609 1155 0.54
610 18 0.01
611 228 0.11
612 5 0.00
613 84 0.04
614 105 0.05
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (610 bp):
CAAATCTTTAAAAGAATAGAGATTATTACGTAAATCCATGTTTGTCTCATTTAAGGCATAAACTT
TGATTCTAAGGAAAACGATGGAGAAAAAAACTTTTCTTATGAAATCAAAGCATTAATATCGTGTA
TCCCAATAAGGAAAATATGTTTTGGTTGCCTAATCATGAAAAGGATGAAGATTATTATAAGAATC
CATGTTAGTTTCATTTGACATACGAACTCAAATTATAAGGAATATCATGGCAAGAAAAGCTTTTC
TTATATAATCAAAACATTAATATCATGTATCCCAATGAATAGAATGTGTTTTTGGAGATCATTAT
GAGAATCCATCTTTGTCTCTTTTAAGGGACAAACATTGATTTTAAAAAGGTAGTGGAAAGAAAAG
CATTTCTTGCTAAAATCAAAGCATCAATATCATGCATCCCAATAAGGAGAGCGTGTTTTGGCTAC
CTAATCAAAAAAATGGAGATTATTACAAGAATCCATTTTTGTATTATTTGACAAATGAACTTTGC
TTTAAGGAAATAAGTGGCAAGAAAAACTTTTCTTGCATAACCAATGCGTCAATATTGTGCATCCC
AAAGACGATAACGTGTTTATGGTGC
Found at i:73310 original size:454 final size:456
Alignment explanation
Indices: 72661--73584 Score: 1261
Period size: 455 Copynumber: 2.0 Consensus size: 456
72651 CGTGAAACGG
* * * ** *
72661 ATGAAGATTATTATAAGAATCCTTGTTAGTTTCATTGGACATATGAACTCAAATTATAAGGAATA
1 ATGAAGATTATTACAAGAATCCATGTTAGTTTCATTGAACATACCAACTCAAATTATAAGGAAAA
* * * *
72726 TCGTGGCAAGAAAAACTTTTCTTATATAATCAAAACACTAATATCATGTATCCCGATGAATAGAA
66 TCGTGGCAAGAAAAACATTTCTTATAGAATCAAAACACTAATATCATATATCCCAATGAATAGAA
*
72791 TGCGGTTTTTTGGAGATCATTATGAGAATCCATCTGTCTCTTTTAAGGGACAAACATTGATTTTA
131 TGCGGTTTTTCGGAGATCATTATGAGAATCCATCTGTCTCTTTTAAGGGACAAACATTGATTTTA
* * *
72856 AAAAGGAAGTGGAAAG-AAAGCATTTCTTGCTAAAATCAAAGCACCAATATCATGCATCCCAATG
196 AAAAGGAAGAGGAAAGAAAAGCATTTCTTGCGAAAATCAAAGCACCAATATCATGCAACCCAATG
* * * * * *
72920 AGGAGAGCATGTTTTGACTGCCTAATTATAGAAA-AAAAGTGGAAATTATTGCAAGAATCCAATT
261 AAGAGAGCATGTTTTGACTACCTAATCACA-AAAGAAAAATGGAAATTATTACAAGAATCCAATT
* *
72984 TTGTATTATTTGACAAATGAAGTTTACTTTAAGGAAATAAGTGGCAAGAAAAACTTTTCTTACAA
325 TTGTATTATTTGACAAATGAACTTTACTTTAAGGAAATAAGTAGCAAGAAAAACTTTTCTTACAA
* * * * * *
73049 AACTAATGCGTCAATATTGTGAATCCCAGTGAAGATAACGTG-TTATGGTGCCCAATCTTTGAAA
390 AACCAATGCGTCAATATTGTGAATCCCAATGAACATAACGTGTTTATGCTGCCAAATCTTTAAAA
73113 GA
455 GA
* * * *
73115 ATGAAGATTATTACAAGAATTCATGTTTGTTTCATTTAACATACCAACTGAAATTATAAGGAAAA
1 ATGAAGATTATTACAAGAATCCATGTTAGTTTCATTGAACATACCAACTCAAATTATAAGGAAAA
* *
73180 TTGTGGCCAGAAAAACATTTCTTATAGAATCAAAACA-TCAATATCATATATCCCAAT-AAGTAG
66 TCGTGGCAAGAAAAACATTTCTTATAGAATCAAAACACT-AATATCATATATCCCAATGAA-TAG
* * *
73243 AATG-TG-TTTTCGGAGATCATTATGAGAATCTATCTTTGTCTCTTTTAAGGGACAAACTTTGAT
129 AATGCGGTTTTTCGGAGATCATTATGAGAATCCATC--TGTCTCTTTTAAGGGACAAACATTGAT
* * **
73306 TTTAAAAAGGTAGAGGAAAGAAAAGCATTTTTTGCGAAAATCAAAGCATTAATATCATGCAACCC
192 TTTAAAAAGGAAGAGGAAAGAAAAGCATTTCTTGCGAAAATCAAAGCACCAATATCATGCAACCC
** * *
73371 AATGAAGAGAGGGTGTTTTGGCTACCTAATCACAAAAGAAAAATGGAGATTATTACAAGAATCCA
257 AATGAAGAGAGCATGTTTTGACTACCTAATCACAAAAGAAAAATGGAAATTATTACAAGAATCCA
* * * * *
73436 TTTTTGTATTATTTGACGAATGAACTTTGCTTTAAGGAAATAAGTAGCAAGAAAAACTTTTGTTG
322 ATTTTGTATTATTTGACAAATGAACTTTACTTTAAGGAAATAAGTAGCAAGAAAAACTTTTCTTA
* * *
73501 CATAACCAGTGCGTCAATATTGTGCATCCCAATGAACATAACGTGTTTATGCTGCCAAATCTTTA
387 CAAAACCAATGCGTCAATATTGTGAATCCCAATGAACATAACGTGTTTATGCTGCCAAATCTTTA
73566 AAAGA
452 AAAGA
73571 AT-AGAGATTATTAC
1 ATGA-AGATTATTAC
73585 GTAAATCCAT
Statistics
Matches: 409, Mismatches: 53, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
452 26 0.06
453 4 0.01
454 158 0.39
455 188 0.46
456 33 0.08
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (456 bp):
ATGAAGATTATTACAAGAATCCATGTTAGTTTCATTGAACATACCAACTCAAATTATAAGGAAAA
TCGTGGCAAGAAAAACATTTCTTATAGAATCAAAACACTAATATCATATATCCCAATGAATAGAA
TGCGGTTTTTCGGAGATCATTATGAGAATCCATCTGTCTCTTTTAAGGGACAAACATTGATTTTA
AAAAGGAAGAGGAAAGAAAAGCATTTCTTGCGAAAATCAAAGCACCAATATCATGCAACCCAATG
AAGAGAGCATGTTTTGACTACCTAATCACAAAAGAAAAATGGAAATTATTACAAGAATCCAATTT
TGTATTATTTGACAAATGAACTTTACTTTAAGGAAATAAGTAGCAAGAAAAACTTTTCTTACAAA
ACCAATGCGTCAATATTGTGAATCCCAATGAACATAACGTGTTTATGCTGCCAAATCTTTAAAAG
A
Found at i:73694 original size:455 final size:450
Alignment explanation
Indices: 72661--73707 Score: 1187
Period size: 455 Copynumber: 2.3 Consensus size: 450
72651 CGTGAAACGG
* * * * * ** * * *
72661 ATGAAGATTATTATAAGAATCCTTGTTAGTTTCATTGGACATATGAACTCAAATTATAAGGAATA
1 ATGAAGATTATTACAAGAATCCATATTCGTCTCATTTAACATA-CAACTGAAATTATAAGGAAAA
* * * * * * * *
72726 TCGTGGCAAGAAAAACTTTTCTTATATAATCAAAACA-CTAATATCATGTATCCCGATGAA-TAG
65 TTGTGGC-AGAAAAACATTTCTTATAGAAACAAAACATC-AATATCATATATCCCAAT-AAGGAA
* *
72789 AATGCGGTTTTTTGGAGATCATTATGAGAATCCATCTGTCTCTTTTAAGGGACAAACATTGATTT
127 AATG-TG-TTTTCGGAGATCATTATGAGAATCCATCTGTCTCTTTTAAGGGACAAACATTGATTT
* * *
72854 TAAAAAGGAAGTGGAAAGAAAGCATTTCTTGCTAAAATCAAAGCACCAATATCATGCATCCCAAT
190 TAAAAAGGAAGAGGAAAGAAAGCATTTCTTGCGAAAATCAAAGCACCAATATCATGCAACCCAAT
* * * * * *
72919 GAGGAGAGCATGTTTTGACTGCCTAATTATAGAAAAAAAGTGGAAATTATTGCAAGAATCCAATT
255 GAAGAGAGCATGTTTTGACTACCTAATCACAGAAAAAAAATGGAAATTATTACAAGAATCCAATT
* *
72984 TTGTATTATTTGACAAATGAAGTTTACTTTAAGGAAATAAGTGGCAAGAAAAACTTTTCTTACAA
320 TTGTATTATTTGACAAATGAACTTTACTTTAAGGAAATAAGTAGCAAGAAAAACTTTTCTTACAA
* * * * * *
73049 AACTAATGCGTCAATATTGTGAATCCCAGTGAAGATAACGTGTTATGGTGCCCAATCTTTGAAAG
385 AACCAATGCGTCAATATTGTGAATCCCAATGAACATAACGTGTTATGCTGCCAAATCTTTAAAAG
73114 A
450 A
* * * *
73115 ATGAAGATTATTACAAGAATTCATGTTTGTTTCATTTAACATACCAACTGAAATTATAAGGAAAA
1 ATGAAGATTATTACAAGAATCCATATTCGTCTCATTTAACATA-CAACTGAAATTATAAGGAAAA
* * *
73180 TTGTGGCCAGAAAAACATTTCTTATAGAATCAAAACATCAATATCATATATCCCAATAAGTAGAA
65 TTGTGG-CAGAAAAACATTTCTTATAGAAACAAAACATCAATATCATATATCCCAATAAGGAAAA
* *
73245 TGTGTTTTCGGAGATCATTATGAGAATCTATCTTTGTCTCTTTTAAGGGACAAACTTTGATTTTA
129 TGTGTTTTCGGAGATCATTATGAGAATCCATC--TGTCTCTTTTAAGGGACAAACATTGATTTTA
* * **
73310 AAAAGGTAGAGGAAAGAAAAGCATTTTTTGCGAAAATCAAAGCATTAATATCATGCAACCCAATG
192 AAAAGGAAGAGGAAAG-AAAGCATTTCTTGCGAAAATCAAAGCACCAATATCATGCAACCCAATG
** * * *
73375 AAGAGAGGGTGTTTTGGCTACCTAATCACA-AAAGAAAAATGGAGATTATTACAAGAATCCATTT
256 AAGAGAGCATGTTTTGACTACCTAATCACAGAAA-AAAAATGGAAATTATTACAAGAATCCAATT
* * * * *
73439 TTGTATTATTTGACGAATGAACTTTGCTTTAAGGAAATAAGTAGCAAGAAAAACTTTTGTTGCAT
320 TTGTATTATTTGACAAATGAACTTTACTTTAAGGAAATAAGTAGCAAGAAAAACTTTTCTTACAA
* *
73504 AACCAGTGCGTCAATATTGTGCATCCCAATGAACATAACGTGTTTATGCTGCCAAATCTTTAAAA
385 AACCAATGCGTCAATATTGTGAATCCCAATGAACATAACGTG-TTATGCTGCCAAATCTTTAAAA
73569 GA
449 GA
* ***
73571 AT-AGAGATTATTACGTA-AATCCATATTCGTCTCATTTAAGGCATA-AACTTTGATTATAAGGA
1 ATGA-AGATTATTAC-AAGAATCCATATTCGTCTCATTTAA--CATACAACTGAAATTATAAGGA
* * * * * *
73633 AAA-TGATGG-AGAAAAA-ACTTTGGTTAT-GAAAACAAAGCATTAATATCGTGTATCTCAATAA
62 AAATTG-TGGCAGAAAAACA-TTT-CTTATAG-AAACAAAACATCAATATCATATATCCCAATAA
73694 GGAAAATGTGTTTT
123 GGAAAATGTGTTTT
73708 GGTTGCCTAA
Statistics
Matches: 508, Mismatches: 69, Indels: 31
0.84 0.11 0.05
Matches are distributed among these distances:
452 26 0.05
453 4 0.01
454 168 0.33
455 234 0.46
456 71 0.14
457 1 0.00
458 4 0.01
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.31
Consensus pattern (450 bp):
ATGAAGATTATTACAAGAATCCATATTCGTCTCATTTAACATACAACTGAAATTATAAGGAAAAT
TGTGGCAGAAAAACATTTCTTATAGAAACAAAACATCAATATCATATATCCCAATAAGGAAAATG
TGTTTTCGGAGATCATTATGAGAATCCATCTGTCTCTTTTAAGGGACAAACATTGATTTTAAAAA
GGAAGAGGAAAGAAAGCATTTCTTGCGAAAATCAAAGCACCAATATCATGCAACCCAATGAAGAG
AGCATGTTTTGACTACCTAATCACAGAAAAAAAATGGAAATTATTACAAGAATCCAATTTTGTAT
TATTTGACAAATGAACTTTACTTTAAGGAAATAAGTAGCAAGAAAAACTTTTCTTACAAAACCAA
TGCGTCAATATTGTGAATCCCAATGAACATAACGTGTTATGCTGCCAAATCTTTAAAAGA
Found at i:74558 original size:597 final size:603
Alignment explanation
Indices: 73110--74632 Score: 1853
Period size: 597 Copynumber: 2.5 Consensus size: 603
73100 CCAATCTTTG
* * * * *
73110 AAAGAATGAAGATTATTACAAGAATTCATGTTTGTTT-CATTTAACATACCAACTGAAATTATAA
1 AAAGGATGAAGATTATTATAAGAA-TCATGTTTGTTTCCA-TTGACATACGAACTCAAATTATAA
* * * *
73174 GGAAAATT-GTGGCCAGAAAAACATTTCTTATAGAATCAAAACATCAATATCATATATCCCAAT-
64 GG-AAATTCGTGGCAAG-AAAACTTTTCTTATATAATCAAAACATCAATATCATGTATCCCAATG
* * *
73237 AAGTAGAATGTGTTTTCGGAGATCATTATGAGAATCTATCTTTGTCTCTTTTAAGGGACAAACTT
127 AA-TAGAATGTGTTTTTGGAGATCATTATGAGAATCCATCTTTGTCTCTTTTAAGGGAAAAACTT
* *
73302 TGATTTTAAAAAGGTAGAGGAAAGAAAAGCATTTT-TTGCGAAAATCAAAGCATTAATATCATGC
191 TGATTTTAAAAAGGTAGAGGAAAGAAAAGCATTTTCTTGCAAAAATCAAAGCATCAATATCATGC
* *
73366 AACCCAATGAAGAGAGGGTGTTTTGGCTACCTAATCACAAAAGAAAAATGGAGATTATTACAAGA
256 ATCCCAATGAAGAGAGCGTGTTTTGGCTACCTAATCACAAAA-AAAAATGGAGATTATTACAAGA
73431 ATCCATTTTTGTATTATTTGACGAATGAACTTTGCTTTAAGGAAATAAGTAGCAAGAAAAACTTT
320 ATCCA-TTTTGTATTATTTGACGAATGAACTTTGCTTTAAGGAAATAAGTAGCAAGAAAAACTTT
* * *
73496 TGTTGCATAACCAGTGCGTCAATATTGTGCATCCCAATGAACATAACGTGTTTATGCTGCCAAAT
384 TCTTACAGAACCAGT-CG-----A-TGT-CATCCCAATGAACATAACGTGTTTATGCTGCCAAAT
* **
73561 CTTTAAAAGAATAGAGATTATTACGTAAATCCATATTCGTCTCATTTAAGGCATAAACTTTGATT
441 CATTAAAAGAATAGAGATTATTACGTAAATCCATATTCGTCTCATTTAAGGCATAAAAATTGATT
*
73626 ATAAGGAAAATGATGGAGAAAAAACTTTGGTTATGAAAACAAAGCATTAATATCGTGTATCTCAA
506 ATAAGGAAAATGATGGAGAAAAAACTTTGGTTATGAAAACAAAGCATTAATATCGTGTATCCCAA
** *
73691 TAAGGAAAATGTGTTTTGGTTGCCTAATCATTA
571 TAAGGAAAATGCATTTTGGTTGCCTAATCATGA
* * * * * * * *
73724 AAATGTTGAAGATTATTGTAAGAATCCACGTTAGATT-CATTGGACATATGAGCTCAAATTATAA
1 AAAGGATGAAGATTATTATAAGAAT-CATGTTTGTTTCCATT-GACATACGAACTCAAATTATAA
*
73788 GG-AATATCATGGCAAGAACAACTTTTCTTATATAATCAAAACA-CTAATATCATGTATCCCAAT
64 GGAAAT-TCGTGGCAAGAA-AACTTTTCTTATATAATCAAAACATC-AATATCATGTATCCCAAT
* * * *
73851 GAATAGAATGTGGTTTTGGAGATCATTATGAGAATCCATCTTTGTCTCGTTTAAGGGAGAAACAT
126 GAATAGAATGTGTTTTTGGAGATCATTATGAGAATCCATCTTTGTCTCTTTTAAGGGAAAAACTT
** * *
73916 TGATTTTAAAAAGGTAGTTGAAAG-AAAGCA-TTTCTTGCTAAAATCAAAGCACCAATATCATGC
191 TGATTTTAAAAAGGTAGAGGAAAGAAAAGCATTTTCTTGCAAAAATCAAAGCATCAATATCATGC
* * * * * * * *
73979 ATCCCATTGAGGAGCGCGTGTTTTGGCTGCCTAATGACAGAAAAAAGTTGAGATTATTACAAGAA
256 ATCCCAATGAAGAGAGCGTGTTTTGGCTACCTAATCACAAAAAAAAATGGAGATTATTACAAGAA
* *
74044 TCCA-TTT-TATTATTTGACGATTGAACTTTGCTTTAAGGAAATAAGTGGCAAGAAAAACTTTTC
321 TCCATTTTGTATTATTTGACGAATGAACTTTGCTTTAAGGAAATAAGTAGCAAGAAAAACTTTTC
* * * * *
74107 TTACAGAACCA-T-G-TGT-ATCCCAATGAAGATGACGTGTTTATGGTGCCTAATCATTGAAAGA
386 TTACAGAACCAGTCGATGTCATCCCAATGAACATAACGTGTTTATGCTGCCAAATCATTAAAAGA
* * * ** * * *
74168 ATGGAGTTTATTATGTAAATCTGTGATT-GTC-CTTTTAAAGGTATAAAAATTGATTCTAAGGAA
451 ATAGAGATTATTACGTAAATCCAT-ATTCGTCTCATTT-AAGGCATAAAAATTGATTATAAGGAA
* * * * * * *
74231 AATGGTGGAGAACAAAGCTTT-TTTATGCAATCAAAGCATTAATATTGTGTATCCCAATAAGGAG
514 AATGATGGAGAA-AAAACTTTGGTTATGAAAACAAAGCATTAATATCGTGTATCCCAATAAGGAA
** *
74295 AATGCATTTT-GTTGCCTGGTCATGG
578 AATGCATTTTGGTTGCCTAATCATGA
* * * * *
74320 TAAGGATGGAGATTATTATAAGAATCAATGTTTGTTTCCGTTGACATACGAACTCAAAGTACAAG
1 AAAGGATGAAGATTATTATAAGAATC-ATGTTTGTTTCCATTGACATACGAACTCAAATTATAAG
* *
74385 GAAATTCGTGGCAAGAAAAGCTTTTCTTATATAATCAAAACATCAATATCATGTATCCTAATGAT
65 GAAATTCGTGGCAAGAAAA-CTTTTCTTATATAATCAAAACATCAATATCATGTATCCCAATGAA
* * ** * *
74450 TAAAATTTGTTTTTAAAGATCATTATGGGAATCCA-CTTTGTCTCTTTTAAGGAAAAAACTTTGA
129 TAGAATGTGTTTTTGGAGATCATTATGAGAATCCATCTTTGTCTCTTTTAAGGGAAAAACTTTGA
* **
74514 TTTTAAAGAGGTAGAGGAAAGAAAAGCATTTTCTTGCAAAAATCAAAGCATCAATCCCATGCATC
194 TTTTAAAAAGGTAGAGGAAAGAAAAGCATTTTCTTGCAAAAATCAAAGCATCAATATCATGCATC
74579 CCAATGAAGAGAGCGTGTTTTGGCTACCTAATCACAAAAAAAAATGGAGATTAT
259 CCAATGAAGAGAGCGTGTTTTGGCTACCTAATCACAAAAAAAAATGGAGATTAT
74633 GATGAGAACC
Statistics
Matches: 776, Mismatches: 115, Indels: 53
0.82 0.12 0.06
Matches are distributed among these distances:
595 46 0.06
596 149 0.19
597 224 0.29
598 10 0.01
599 3 0.00
606 1 0.00
608 1 0.00
609 62 0.08
610 3 0.00
612 31 0.04
613 73 0.09
614 171 0.22
615 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (603 bp):
AAAGGATGAAGATTATTATAAGAATCATGTTTGTTTCCATTGACATACGAACTCAAATTATAAGG
AAATTCGTGGCAAGAAAACTTTTCTTATATAATCAAAACATCAATATCATGTATCCCAATGAATA
GAATGTGTTTTTGGAGATCATTATGAGAATCCATCTTTGTCTCTTTTAAGGGAAAAACTTTGATT
TTAAAAAGGTAGAGGAAAGAAAAGCATTTTCTTGCAAAAATCAAAGCATCAATATCATGCATCCC
AATGAAGAGAGCGTGTTTTGGCTACCTAATCACAAAAAAAAATGGAGATTATTACAAGAATCCAT
TTTGTATTATTTGACGAATGAACTTTGCTTTAAGGAAATAAGTAGCAAGAAAAACTTTTCTTACA
GAACCAGTCGATGTCATCCCAATGAACATAACGTGTTTATGCTGCCAAATCATTAAAAGAATAGA
GATTATTACGTAAATCCATATTCGTCTCATTTAAGGCATAAAAATTGATTATAAGGAAAATGATG
GAGAAAAAACTTTGGTTATGAAAACAAAGCATTAATATCGTGTATCCCAATAAGGAAAATGCATT
TTGGTTGCCTAATCATGA
Done.