Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1895
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 72589
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Found at i:5751 original size:22 final size:21
Alignment explanation
Indices: 5709--5768 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 21
5699 ATTCAAAATG
*
5709 ATTTT-AAATTAAATTAATTAA
1 ATTTTAAAATTTAA-TAATTAA
5730 ATTTTAAAATTTAATAATTTAA
1 ATTTTAAAATTTAATAA-TTAA
5752 A-TTTAAAATTTTAATAA
1 ATTTTAAAA-TTTAATAA
5769 AATAATTTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
21 15 0.43
22 20 0.57
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTTTAAAATTTAATAATTAA
Found at i:9311 original size:465 final size:465
Alignment explanation
Indices: 8440--9365 Score: 1717
Period size: 465 Copynumber: 2.0 Consensus size: 465
8430 ACCTGTAGAA
*
8440 TAATATTTCTATAATTAATATTCAATAGCAATAGAAATTTTAAAAACTAAATTGAGTGAATATAT
1 TAATATTTCTATAATTAACATTCAATAGCAATAGAAATTTTAAAAACTAAATTGAGTGAATATAT
8505 ACTTAAACCTTGGTTTGAGAGACTTTCAATTCTGTTGCTACTTAAATCCAAGTACTTCAAGTTTG
66 ACTTAAACCTTGGTTTGAGAGACTTTCAATTCTGTTGCTACTTAAATCCAAGTACTTCAAGTTTG
8570 TCAGATTATTAAATTCTGTTGAAGTCCAATATTGATCAGCAATATATTCATGATATGCCAGAGCT
131 TCAGATTATTAAATTCTGTTGAAGTCCAATATTGATCAGCAATATATTCATGATATGCCAGAGCT
* *
8635 TTTCCTAAAACAAGAATTGATTTTAATGTTAAAAAGAGGTAATGCGAGTCTACCTTGAATATTGA
196 TTTCCTAAAACAAGAATTGATTTTAATGTAAAAAAGAGGTAATGCGAGTCTACCTTGAATATGGA
* * *
8700 TCATTCCTTTCAATTCATTATCCCGTAAATTTAAAGTCTTCAAGGATGAAAGGCCGCCTATATGA
261 TCATTCCTTTCAATTCATTACCCCGCAAATTTAAAGTCTTCAAGGATGAAAGGCCACCTATATGA
*
8765 AAGAGAATGCTATTCTTTAAAGAGTTCTCACCTAAATCAAGAGTTTCCAAATGACTGAGATTTGA
326 AAGAGAATGCTATTCTTTAAAAAGTTCTCACCTAAATCAAGAGTTTCCAAATGACTGAGATTTGA
*
8830 AAGCCATTGGTCACCTGATATATATTAACAATGAAAAAATTTTAATATATATGTTTTAGTTACTT
391 AAGCCATTGATCACCTGATATATATTAACAATGAAAAAATTTTAATATATATGTTTTAGTTACTT
8895 AAGCTATAAT
456 AAGCTATAAT
*
8905 TAATATTTCTATAATTAACATTCAATAGCAATAGAAATTTTAAAAACTGAATTGAGTGAATATAT
1 TAATATTTCTATAATTAACATTCAATAGCAATAGAAATTTTAAAAACTAAATTGAGTGAATATAT
8970 ACTTAAACCTTGGTTTGAGAGACTTTCAATTCTGTTGCTACTTAAATCCAAGTACTTCAAGTTTG
66 ACTTAAACCTTGGTTTGAGAGACTTTCAATTCTGTTGCTACTTAAATCCAAGTACTTCAAGTTTG
* *
9035 TCAGATTATTCAATTCTGTTGAAGTCCAATATTGATCAGCAATATATTCATGATATGTCAGAGCT
131 TCAGATTATTAAATTCTGTTGAAGTCCAATATTGATCAGCAATATATTCATGATATGCCAGAGCT
9100 TTTCCTAAAACAAGAATTGATTTTAATGTAAAAAAGAGGTAATGCGAGTCTACCTTGAATATGGA
196 TTTCCTAAAACAAGAATTGATTTTAATGTAAAAAAGAGGTAATGCGAGTCTACCTTGAATATGGA
*
9165 TCATTCCTTTCAATTCATTACCCCGCAAATTTAAAGTCTTCAAGGATGAAAGGCCACGTATATGA
261 TCATTCCTTTCAATTCATTACCCCGCAAATTTAAAGTCTTCAAGGATGAAAGGCCACCTATATGA
* * *
9230 AAGAGAATGCTATTCTTTAAAAAGTTCTTACTTAAATCAAGAGTTTCCAAATGATTGAGATTTGA
326 AAGAGAATGCTATTCTTTAAAAAGTTCTCACCTAAATCAAGAGTTTCCAAATGACTGAGATTTGA
9295 AAGCCATTGATCACCTGATATATATTAACAATGAAAAAATTTTAATATATATGTTTTAGTTACTT
391 AAGCCATTGATCACCTGATATATATTAACAATGAAAAAATTTTAATATATATGTTTTAGTTACTT
9360 AAGCTA
456 AAGCTA
9366 ATTGTATATC
Statistics
Matches: 446, Mismatches: 15, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
465 446 1.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.36
Consensus pattern (465 bp):
TAATATTTCTATAATTAACATTCAATAGCAATAGAAATTTTAAAAACTAAATTGAGTGAATATAT
ACTTAAACCTTGGTTTGAGAGACTTTCAATTCTGTTGCTACTTAAATCCAAGTACTTCAAGTTTG
TCAGATTATTAAATTCTGTTGAAGTCCAATATTGATCAGCAATATATTCATGATATGCCAGAGCT
TTTCCTAAAACAAGAATTGATTTTAATGTAAAAAAGAGGTAATGCGAGTCTACCTTGAATATGGA
TCATTCCTTTCAATTCATTACCCCGCAAATTTAAAGTCTTCAAGGATGAAAGGCCACCTATATGA
AAGAGAATGCTATTCTTTAAAAAGTTCTCACCTAAATCAAGAGTTTCCAAATGACTGAGATTTGA
AAGCCATTGATCACCTGATATATATTAACAATGAAAAAATTTTAATATATATGTTTTAGTTACTT
AAGCTATAAT
Found at i:10714 original size:22 final size:22
Alignment explanation
Indices: 10661--10714 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
10651 ATAATATTAA
* *
10661 TATTAATATAAATAAAATTTAT
1 TATTTATAAAAATAAAATTTAT
* *
10683 TAATTT-TAAAAATTAAATTTGT
1 T-ATTTATAAAAATAAAATTTAT
10705 TATTTATAAA
1 TATTTATAAA
10715 GTATGTAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 4 0.15
22 19 0.73
23 3 0.12
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
TATTTATAAAAATAAAATTTAT
Found at i:11691 original size:22 final size:22
Alignment explanation
Indices: 11666--11721 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
11656 TATTATAATC
11666 AAATTTAAAAATT-TCACAAAT
1 AAATTTAAAAATTCTCACAAAT
* * *
11687 AAAATTAAATGATTCTCACATAT
1 AAATTTAAA-AATTCTCACAAAT
11710 AAATTTAAAAAT
1 AAATTTAAAAAT
11722 ATTAGAAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 8 0.29
22 5 0.18
23 15 0.54
ACGTcount: A:0.55, C:0.09, G:0.02, T:0.34
Consensus pattern (22 bp):
AAATTTAAAAATTCTCACAAAT
Found at i:12950 original size:2 final size:2
Alignment explanation
Indices: 12938--12993 Score: 94
Period size: 2 Copynumber: 28.0 Consensus size: 2
12928 ACCATATAAC
* *
12938 AT AT GT AT AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12980 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
12994 TAGATTAACA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
AT
Found at i:13966 original size:3 final size:3
Alignment explanation
Indices: 13960--13997 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
13950 TATTTTTCTC
13960 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
13998 TAAAGGCGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:21091 original size:12 final size:12
Alignment explanation
Indices: 21076--21104 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
21066 TGATGATGAT
21076 AATAATAATAAC
1 AATAATAATAAC
21088 AATAATAATAAC
1 AATAATAATAAC
21100 AATAA
1 AATAA
21105 AAAGAAGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (12 bp):
AATAATAATAAC
Found at i:26378 original size:22 final size:21
Alignment explanation
Indices: 26336--26395 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 21
26326 ATTCAAAATG
*
26336 ATTTT-AAATTAAATTAATTAA
1 ATTTTAAAATTTAA-TAATTAA
26357 ATTTTAAAATTTAATAATTTAA
1 ATTTTAAAATTTAATAA-TTAA
26379 A-TTTAAAACTTTAATAA
1 ATTTTAAAA-TTTAATAA
26396 AATAATTTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
21 15 0.43
22 20 0.57
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTTTAAAATTTAATAATTAA
Found at i:26409 original size:22 final size:21
Alignment explanation
Indices: 26330--26409 Score: 54
Period size: 22 Copynumber: 3.7 Consensus size: 21
26320 TAATTCATTC
* *
26330 AAAATGATTTTAAA-TTAAAT
1 AAAATAATTTTAAACTTTAAT
* * *
26350 TAATTAAATTTTAAAATTTAAT
1 AAAAT-AATTTTAAACTTTAAT
** *
26372 AATTTAAATTTAAAACTTTAAT
1 AAAAT-AATTTTAAACTTTAAT
26394 AAAATAATTTTCAAAC
1 AAAATAATTTT-AAAC
26410 CTAAATAATT
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
20 3 0.07
21 13 0.28
22 30 0.65
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (21 bp):
AAAATAATTTTAAACTTTAAT
Found at i:27534 original size:13 final size:13
Alignment explanation
Indices: 27516--27580 Score: 55
Period size: 13 Copynumber: 4.9 Consensus size: 13
27506 TTGTTTATAG
27516 ATTTTTTTATTTA
1 ATTTTTTTATTTA
27529 ATTTTTAATTA-TTA
1 ATTTTT--TTATTTA
*
27543 TTTTTTGTTATTT-
1 ATTTTT-TTATTTA
27556 ATTTATTTTA-TTA
1 ATTT-TTTTATTTA
*
27569 TTTTTTTTATTT
1 ATTTTTTTATTT
27581 TATATAGTGT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
12 7 0.17
13 20 0.48
14 12 0.29
15 3 0.07
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.77
Consensus pattern (13 bp):
ATTTTTTTATTTA
Found at i:27545 original size:26 final size:25
Alignment explanation
Indices: 27517--27580 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 25
27507 TGTTTATAGA
27517 TTTTTTTATTTAATTT-TTAATTATTAT
1 TTTTTTTATTT-ATTTATT--TTATTAT
27544 TTTTTGTTATTTATTTATTTTATTAT
1 TTTTT-TTATTTATTTATTTTATTAT
27570 TTTTTTTATTT
1 TTTTTTTATTT
27581 TATATAGTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
25 6 0.17
26 12 0.34
27 9 0.26
28 8 0.23
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (25 bp):
TTTTTTTATTTATTTATTTTATTAT
Found at i:27577 original size:17 final size:16
Alignment explanation
Indices: 27517--27583 Score: 55
Period size: 18 Copynumber: 3.9 Consensus size: 16
27507 TGTTTATAGA
*
27517 TTTTTTTATTTAATTT
1 TTTTTTTATTTTATTT
*
27533 TTAATTATTATTTT-TTGT
1 TT--TTTTTATTTTATT-T
27551 TATTTATTTATTTTATTAT
1 T-TTT-TTTATTTTATT-T
27570 TTTTTTTATTTTAT
1 TTTTTTTATTTTAT
27584 ATAGTGTTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
16 2 0.05
17 14 0.34
18 20 0.49
19 5 0.12
ACGTcount: A:0.21, C:0.00, G:0.01, T:0.78
Consensus pattern (16 bp):
TTTTTTTATTTTATTT
Found at i:27582 original size:26 final size:26
Alignment explanation
Indices: 27517--27602 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 26
27507 TGTTTATAGA
*
27517 TTTTTTTATTTAATTT-TTAATTATTAT
1 TTTTTTTATTTTATTTATT--TTATTAT
27544 TTTTTGTTA-TTTATTTATTTTATTAT
1 TTTTT-TTATTTTATTTATTTTATTAT
* *
27570 TTTTTTTATTTTATATAGTGTTATTAT
1 TTTTTTTATTTTATTTA-TTTTATTAT
*
27597 TATTTT
1 TTTTTT
27603 GATGCTTTAG
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
25 3 0.06
26 19 0.37
27 24 0.47
28 5 0.10
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.74
Consensus pattern (26 bp):
TTTTTTTATTTTATTTATTTTATTAT
Found at i:30130 original size:3 final size:3
Alignment explanation
Indices: 30122--30157 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
30112 TATCATTATA
30122 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
30158 CAATTTTTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:31623 original size:14 final size:13
Alignment explanation
Indices: 31606--31640 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 13
31596 TATATAAGGT
31606 AAAAATAATAAATA
1 AAAAATAA-AAATA
31620 AAAAATAAAAATA
1 AAAAATAAAAATA
31633 ATAAAATA
1 A-AAAATA
31641 GTAATTGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAAATAAAAATA
Found at i:31757 original size:50 final size:50
Alignment explanation
Indices: 31682--31992 Score: 424
Period size: 50 Copynumber: 6.2 Consensus size: 50
31672 AGTTGTTACC
* * * *
31682 ATTGTTGACTATCCTTCATCAACCTTTGACAATAGAGAGAGGTGGCCGTA
1 ATTGTTGACGATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGCCATA
* *
31732 ATTGTTGACGATTCTTCACCAACCTTTGACAATAGAGAGAGGTGACCGTA
1 ATTGTTGACGATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGCCATA
*
31782 ATTGTTGACGATTCTTCACCAACCTTTGACAATAGAGAGAGAGGTGGCCGTA
1 ATTGTTGACGATTCTTCACCAACCTTTGACAAT--AGAGAGAGGTGGCCATA
* * * *
31834 ATTGTTGATGATTCTTCACCAACCTTTGACAATAGAAAGCGGTGGCCATT
1 ATTGTTGACGATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGCCATA
* * * *
31884 ATTGTTAACGATTCTTCACCAACCTTTGACAATAGAAAGCGGTGGCCATT
1 ATTGTTGACGATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGCCATA
* * * * *
31934 ATTGTTAACGATTCTTCACCAACCTTTGATAATAGAGAAATGTGACCATA
1 ATTGTTGACGATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGCCATA
31984 ATTGTTGAC
1 ATTGTTGAC
31993 TCTAAGTATA
Statistics
Matches: 239, Mismatches: 20, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
50 191 0.80
52 48 0.20
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (50 bp):
ATTGTTGACGATTCTTCACCAACCTTTGACAATAGAGAGAGGTGGCCATA
Found at i:31856 original size:102 final size:102
Alignment explanation
Indices: 31682--31992 Score: 441
Period size: 102 Copynumber: 3.1 Consensus size: 102
31672 AGTTGTTACC
* * *
31682 ATTGTTGACTATCCTTCATCAACCTTTGACAAT--AGAGAGAGGTGGCCGTAATTGTTGACGATT
1 ATTGTTGACGATTCTTCACCAACCTTTGACAATAGAGAGAGAGGTGGCCGTAATTGTTGACGATT
*
31745 CTTCACCAACCTTTGACAATAGAGAGAGGTGACCGTA
66 CTTCACCAACCTTTGACAATAGAGAGAGGTGACCATA
*
31782 ATTGTTGACGATTCTTCACCAACCTTTGACAATAGAGAGAGAGGTGGCCGTAATTGTTGATGATT
1 ATTGTTGACGATTCTTCACCAACCTTTGACAATAGAGAGAGAGGTGGCCGTAATTGTTGACGATT
* * * *
31847 CTTCACCAACCTTTGACAATAGAAAGCGGTGGCCATT
66 CTTCACCAACCTTTGACAATAGAGAGAGGTGACCATA
* * * * *
31884 ATTGTTAACGATTCTTCACCAACCTTTGACAATAGA-A-AGCGGTGGCCATTATTGTTAACGATT
1 ATTGTTGACGATTCTTCACCAACCTTTGACAATAGAGAGAGAGGTGGCCGTAATTGTTGACGATT
* * *
31947 CTTCACCAACCTTTGATAATAGAGAAATGTGACCATA
66 CTTCACCAACCTTTGACAATAGAGAGAGGTGACCATA
31984 ATTGTTGAC
1 ATTGTTGAC
31993 TCTAAGTATA
Statistics
Matches: 186, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
100 89 0.48
101 1 0.01
102 96 0.52
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (102 bp):
ATTGTTGACGATTCTTCACCAACCTTTGACAATAGAGAGAGAGGTGGCCGTAATTGTTGACGATT
CTTCACCAACCTTTGACAATAGAGAGAGGTGACCATA
Found at i:31958 original size:152 final size:152
Alignment explanation
Indices: 31682--31993 Score: 441
Period size: 152 Copynumber: 2.1 Consensus size: 152
31672 AGTTGTTACC
* * * *
31682 ATTGTTGACTATCCTTCATCAACCTTTGACAATAGAGAGAGGTGGCCGTAATTGTTGACGATTCT
1 ATTGTTGACTATCCTTCACCAACCTTTGACAATAGAAAGAGGTGGCCATAATTGTTAACGATTCT
* * *
31747 TCACCAACCTTTGACAATAGAGAGAGGTGACCGTAATTGTTGACGATTCTTCACCAACCTTTGAC
66 TCACCAACCTTTGACAATAGAAAGAGGTGACCATAATTGTTAACGATTCTTCACCAACCTTTGAC
31812 AATAGAGAGAGAGGTGGCCGTA
131 AATAGAGAGAGAGGTGGCCGTA
* * *
31834 ATTGTTGA-TGATTCTTCACCAACCTTTGACAATAGAAAGCGGTGGCCATTATTGTTAACGATTC
1 ATTGTTGACT-ATCCTTCACCAACCTTTGACAATAGAAAGAGGTGGCCATAATTGTTAACGATTC
* * *
31898 TTCACCAACCTTTGACAATAGAAAGCGGTGGCCATTATTGTTAACGATTCTTCACCAACCTTTGA
65 TTCACCAACCTTTGACAATAGAAAGAGGTGACCATAATTGTTAACGATTCTTCACCAACCTTTGA
* * * *
31963 TAATAGAGA-A-ATGTGACCATA
130 CAATAGAGAGAGAGGTGGCCGTA
31984 ATTGTTGACT
1 ATTGTTGACT
31994 CTAAGTATAT
Statistics
Matches: 141, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
150 16 0.11
151 3 0.02
152 122 0.87
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (152 bp):
ATTGTTGACTATCCTTCACCAACCTTTGACAATAGAAAGAGGTGGCCATAATTGTTAACGATTCT
TCACCAACCTTTGACAATAGAAAGAGGTGACCATAATTGTTAACGATTCTTCACCAACCTTTGAC
AATAGAGAGAGAGGTGGCCGTA
Found at i:34516 original size:20 final size:20
Alignment explanation
Indices: 34481--34530 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 20
34471 CCGGTAATAT
34481 AAAAT-TATAATTATTATTGTGA
1 AAAATATATAATTA-TA-TGT-A
*
34503 AATATATATAATTATATGTA
1 AAAATATATAATTATATGTA
34523 AAAATATA
1 AAAATATA
34531 AAATAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 8 0.32
21 3 0.12
22 6 0.24
23 8 0.32
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (20 bp):
AAAATATATAATTATATGTA
Found at i:35300 original size:34 final size:34
Alignment explanation
Indices: 35231--35448 Score: 278
Period size: 34 Copynumber: 6.5 Consensus size: 34
35221 CAATGACATT
* ** *
35231 ATTGTTGATTAAAT-GGTGATTTAATAGTTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
* * * *
35264 ATTGTTGATTAAATGGGTGATTTGGTGGTTTGCC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
*
35298 ATTGTTGACTAAAT-GGAGATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
*
35331 ATTGTTGATTAAATGGGAAATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
* *
35365 ATTGTTGATTAAATGGGTGATTTGGTGGCTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
* * * *
35399 ATTGTTGACTAAATGGGAAATTTGGTAGGTTGCC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
35433 ATTGTTGATTAAATGG
1 ATTGTTGATTAAATGG
35449 TGGTTTTTAT
Statistics
Matches: 162, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
33 42 0.26
34 120 0.74
ACGTcount: A:0.26, C:0.08, G:0.26, T:0.40
Consensus pattern (34 bp):
ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
Found at i:35414 original size:68 final size:67
Alignment explanation
Indices: 35231--35450 Score: 314
Period size: 67 Copynumber: 3.3 Consensus size: 67
35221 CAATGACATT
** * ** * *
35231 ATTGTTGATTAAATGGTGATTTAATAGTTTACCATTGTTGATTAAATGGGTGATTTGGTGGTTTG
1 ATTGTTGATTAAATGGTGATTTGGTAGCTTACCATTGTTGATTAAATGGGAAATTTGGTAGCTTG
35296 CC
66 CC
* * *
35298 ATTGTTGACTAAATGGAGATTTGGTAGCTTACCATTGTTGATTAAATGGGAAATTTGGTAGCTTA
1 ATTGTTGATTAAATGGTGATTTGGTAGCTTACCATTGTTGATTAAATGGGAAATTTGGTAGCTTG
35363 CC
66 CC
* * *
35365 ATTGTTGATTAAATGGGTGATTTGGTGGCTTACCATTGTTGACTAAATGGGAAATTTGGTAGGTT
1 ATTGTTGATTAAAT-GGTGATTTGGTAGCTTACCATTGTTGATTAAATGGGAAATTTGGTAGCTT
35430 GCC
65 GCC
35433 ATTGTTGATTAAATGGTG
1 ATTGTTGATTAAATGGTG
35451 GTTTTTATTA
Statistics
Matches: 136, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
67 74 0.54
68 62 0.46
ACGTcount: A:0.25, C:0.08, G:0.26, T:0.40
Consensus pattern (67 bp):
ATTGTTGATTAAATGGTGATTTGGTAGCTTACCATTGTTGATTAAATGGGAAATTTGGTAGCTTG
CC
Found at i:39931 original size:34 final size:34
Alignment explanation
Indices: 39862--40079 Score: 287
Period size: 34 Copynumber: 6.5 Consensus size: 34
39852 AAGTGGGAGA
* * *
39862 ATTGTTGATTAAAT-GGTGATTTAGTAGTTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
* * * *
39895 ATTGTTGATTAAATGGGTGATTTGGTGGTTTGCC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
*
39929 ATTGTTGACTAAAT-GGAGATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
*
39962 ATTGTTGATTAAATGGGAAATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
* *
39996 ATTGTTGATTAAATGGGTGATTTGGTGGCTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
* * * *
40030 ATTGTTGACTAAATGGGAAATTTGGTAGGTTGCC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
40064 ATTGTTGATTAAATGG
1 ATTGTTGATTAAATGG
40080 TGGTTTTTAT
Statistics
Matches: 163, Mismatches: 20, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
33 42 0.26
34 121 0.74
ACGTcount: A:0.25, C:0.08, G:0.27, T:0.40
Consensus pattern (34 bp):
ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
Found at i:40045 original size:68 final size:67
Alignment explanation
Indices: 39862--40081 Score: 323
Period size: 67 Copynumber: 3.3 Consensus size: 67
39852 AAGTGGGAGA
* * ** * *
39862 ATTGTTGATTAAATGGTGATTTAGTAGTTTACCATTGTTGATTAAATGGGTGATTTGGTGGTTTG
1 ATTGTTGATTAAATGGTGATTTGGTAGCTTACCATTGTTGATTAAATGGGAAATTTGGTAGCTTG
39927 CC
66 CC
* * *
39929 ATTGTTGACTAAATGGAGATTTGGTAGCTTACCATTGTTGATTAAATGGGAAATTTGGTAGCTTA
1 ATTGTTGATTAAATGGTGATTTGGTAGCTTACCATTGTTGATTAAATGGGAAATTTGGTAGCTTG
39994 CC
66 CC
* * *
39996 ATTGTTGATTAAATGGGTGATTTGGTGGCTTACCATTGTTGACTAAATGGGAAATTTGGTAGGTT
1 ATTGTTGATTAAAT-GGTGATTTGGTAGCTTACCATTGTTGATTAAATGGGAAATTTGGTAGCTT
40061 GCC
65 GCC
40064 ATTGTTGATTAAATGGTG
1 ATTGTTGATTAAATGGTG
40082 GTTTTTATTA
Statistics
Matches: 137, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
67 75 0.55
68 62 0.45
ACGTcount: A:0.25, C:0.08, G:0.27, T:0.40
Consensus pattern (67 bp):
ATTGTTGATTAAATGGTGATTTGGTAGCTTACCATTGTTGATTAAATGGGAAATTTGGTAGCTTG
CC
Found at i:44913 original size:34 final size:33
Alignment explanation
Indices: 44867--45085 Score: 278
Period size: 34 Copynumber: 6.5 Consensus size: 33
44857 GTAAAAACCA
*
44867 CCATTTAATCAACAATGGCAACTTACCAAATCTC
1 CCATTTAATCAACAATGGAAAC-TACCAAATCTC
* * *
44901 CCATTTAGTCAACAATGGTAAACCACCAAATCAC
1 CCATTTAATCAACAATGG-AAACTACCAAATCTC
*
44935 CCATTTAATCAACAATGGTAAGCTACCAAATCTC
1 CCATTTAATCAACAATGG-AAACTACCAAATCTC
*
44969 CCATTTAATCAACAATGGTAAGCTACCAAATCTC
1 CCATTTAATCAACAATGG-AAACTACCAAATCTC
* * *
45003 CCATTTAGTCAACAATGGCAAACCACCAAATCAC
1 CCATTTAATCAACAATGG-AAACTACCAAATCTC
* *
45037 CCATTTAATCAACAATGGTAAACTACTAAAT-TA
1 CCATTTAATCAACAATGG-AAACTACCAAATCTC
45070 CCATTTAATCAACAAT
1 CCATTTAATCAACAAT
45086 TCTCCCACTT
Statistics
Matches: 165, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
33 16 0.10
34 146 0.88
35 3 0.02
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.25
Consensus pattern (33 bp):
CCATTTAATCAACAATGGAAACTACCAAATCTC
Found at i:44981 original size:68 final size:67
Alignment explanation
Indices: 44867--45085 Score: 314
Period size: 68 Copynumber: 3.2 Consensus size: 67
44857 GTAAAAACCA
* *
44867 CCATTTAATCAACAATGGCAACTTACCAAATCTCCCATTTAGTCAACAATGGTAAACCACCAAAT
1 CCATTTAATCAACAATGGCAAC-TACCAAATCTCCCATTTAATCAACAATGGTAAACTACCAAAT
44932 CAC
65 CAC
* *
44935 CCATTTAATCAACAATGGTAAGCTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCAAAT
1 CCATTTAATCAACAATGGCAA-CTACCAAATCTCCCATTTAATCAACAATGGTAAACTACCAAAT
*
45000 CTC
65 CAC
* * * *
45003 CCATTTAGTCAACAATGGCAAACCACCAAATCACCCATTTAATCAACAATGGTAAACTACTAAAT
1 CCATTTAATCAACAATGGC-AACTACCAAATCTCCCATTTAATCAACAATGGTAAACTACCAAAT
*
45068 TA-
65 CAC
45070 CCATTTAATCAACAAT
1 CCATTTAATCAACAAT
45086 TCTCCCACTT
Statistics
Matches: 135, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
67 15 0.11
68 117 0.87
69 3 0.02
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.25
Consensus pattern (67 bp):
CCATTTAATCAACAATGGCAACTACCAAATCTCCCATTTAATCAACAATGGTAAACTACCAAATC
AC
Found at i:45043 original size:102 final size:101
Alignment explanation
Indices: 44866--45085 Score: 370
Period size: 102 Copynumber: 2.2 Consensus size: 101
44856 GGTAAAAACC
*
44866 ACCATTTAATCAACAATGGCAACTTACCAAATCTCCCATTTAGTCAACAATGGTAAACCACCAAA
1 ACCATTTAATCAACAATGGCAACTTACCAAATCTCCCATTTAGTCAACAATGGCAAACCACCAAA
*
44931 TCACCCATTTAATCAACAATGGTAAGCTACCAAATCT
66 TCACCCATTTAATCAACAATGGTAAACTACCAAAT-T
* *
44968 CCCATTTAATCAACAATGGTAAGC-TACCAAATCTCCCATTTAGTCAACAATGGCAAACCACCAA
1 ACCATTTAATCAACAATGGCAA-CTTACCAAATCTCCCATTTAGTCAACAATGGCAAACCACCAA
*
45032 ATCACCCATTTAATCAACAATGGTAAACTACTAAATT
65 ATCACCCATTTAATCAACAATGGTAAACTACCAAATT
45069 ACCATTTAATCAACAAT
1 ACCATTTAATCAACAAT
45086 TCTCCCACTT
Statistics
Matches: 111, Mismatches: 6, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
101 17 0.15
102 93 0.84
103 1 0.01
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.25
Consensus pattern (101 bp):
ACCATTTAATCAACAATGGCAACTTACCAAATCTCCCATTTAGTCAACAATGGCAAACCACCAAA
TCACCCATTTAATCAACAATGGTAAACTACCAAATT
Found at i:49548 original size:34 final size:33
Alignment explanation
Indices: 49502--49718 Score: 265
Period size: 34 Copynumber: 6.4 Consensus size: 33
49492 GTAAAAACCA
49502 CCATTTAATCAACAATGGCAACTTACCAAATCTC
1 CCATTTAATCAACAATGGCAAC-TACCAAATCTC
* * * *
49536 CCATTTAGTCAACAATGGTAAACCACCAAATCAC
1 CCATTTAATCAACAATGG-CAACTACCAAATCTC
*
49570 CCATTTAATCAACAATGGTAAGCTACCAAATCTC
1 CCATTTAATCAACAATGGCAA-CTACCAAATCTC
*
49604 CCATTTAATCAACAATGGTAAGCTACCAAATCTC
1 CCATTTAATCAACAATGGCAA-CTACCAAATCTC
* * *
49638 CCATTTAGTCAACAATGGCAAACCACCAAATCAC
1 CCATTTAATCAACAATGGC-AACTACCAAATCTC
* * *
49672 CCATTTAATCAACAATGGTAAACTACTAAAT-TA
1 CCATTTAATCAACAATGG-CAACTACCAAATCTC
49705 CCATTTAATCAACA
1 CCATTTAATCAACA
49719 CCTCCTCCAT
Statistics
Matches: 161, Mismatches: 18, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
33 16 0.10
34 140 0.87
35 5 0.03
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.25
Consensus pattern (33 bp):
CCATTTAATCAACAATGGCAACTACCAAATCTC
Found at i:49616 original size:68 final size:67
Alignment explanation
Indices: 49502--49718 Score: 310
Period size: 68 Copynumber: 3.2 Consensus size: 67
49492 GTAAAAACCA
* *
49502 CCATTTAATCAACAATGGCAACTTACCAAATCTCCCATTTAGTCAACAATGGTAAACCACCAAAT
1 CCATTTAATCAACAATGGCAAC-TACCAAATCTCCCATTTAATCAACAATGGTAAACTACCAAAT
49567 CAC
65 CAC
* *
49570 CCATTTAATCAACAATGGTAAGCTACCAAATCTCCCATTTAATCAACAATGGTAAGCTACCAAAT
1 CCATTTAATCAACAATGGCAA-CTACCAAATCTCCCATTTAATCAACAATGGTAAACTACCAAAT
*
49635 CTC
65 CAC
* * * *
49638 CCATTTAGTCAACAATGGCAAACCACCAAATCACCCATTTAATCAACAATGGTAAACTACTAAAT
1 CCATTTAATCAACAATGGC-AACTACCAAATCTCCCATTTAATCAACAATGGTAAACTACCAAAT
*
49703 TA-
65 CAC
49705 CCATTTAATCAACA
1 CCATTTAATCAACA
49719 CCTCCTCCAT
Statistics
Matches: 133, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
67 13 0.10
68 117 0.88
69 3 0.02
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.25
Consensus pattern (67 bp):
CCATTTAATCAACAATGGCAACTACCAAATCTCCCATTTAATCAACAATGGTAAACTACCAAATC
AC
Found at i:49678 original size:102 final size:101
Alignment explanation
Indices: 49501--49718 Score: 366
Period size: 102 Copynumber: 2.1 Consensus size: 101
49491 GGTAAAAACC
*
49501 ACCATTTAATCAACAATGGCAACTTACCAAATCTCCCATTTAGTCAACAATGGTAAACCACCAAA
1 ACCATTTAATCAACAATGGCAACTTACCAAATCTCCCATTTAGTCAACAATGGCAAACCACCAAA
*
49566 TCACCCATTTAATCAACAATGGTAAGCTACCAAATCT
66 TCACCCATTTAATCAACAATGGTAAACTACCAAAT-T
* *
49603 CCCATTTAATCAACAATGGTAAGC-TACCAAATCTCCCATTTAGTCAACAATGGCAAACCACCAA
1 ACCATTTAATCAACAATGGCAA-CTTACCAAATCTCCCATTTAGTCAACAATGGCAAACCACCAA
*
49667 ATCACCCATTTAATCAACAATGGTAAACTACTAAATT
65 ATCACCCATTTAATCAACAATGGTAAACTACCAAATT
49704 ACCATTTAATCAACA
1 ACCATTTAATCAACA
49719 CCTCCTCCAT
Statistics
Matches: 109, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
101 15 0.14
102 93 0.85
103 1 0.01
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.25
Consensus pattern (101 bp):
ACCATTTAATCAACAATGGCAACTTACCAAATCTCCCATTTAGTCAACAATGGCAAACCACCAAA
TCACCCATTTAATCAACAATGGTAAACTACCAAATT
Found at i:53335 original size:1 final size:1
Alignment explanation
Indices: 53329--53357 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
53319 TCTTCCAGAG
53329 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
53358 CCTTTTGATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:59944 original size:27 final size:28
Alignment explanation
Indices: 59906--59973 Score: 86
Period size: 27 Copynumber: 2.5 Consensus size: 28
59896 ACAAGCTACA
59906 ATTTTTGACAAACAAAAAAG-AAACACC
1 ATTTTTGACAAACAAAAAAGTAAACACC
* * *
59933 ATTTTTGACAAA-TACAAAGTAACCACC
1 ATTTTTGACAAACAAAAAAGTAAACACC
*
59960 ATTGTTGACAAACA
1 ATTTTTGACAAACA
59974 CATGGTGGCT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 5 0.15
27 29 0.85
ACGTcount: A:0.49, C:0.19, G:0.09, T:0.24
Consensus pattern (28 bp):
ATTTTTGACAAACAAAAAAGTAAACACC
Found at i:59992 original size:24 final size:25
Alignment explanation
Indices: 59961--60018 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 25
59951 GTAACCACCA
*
59961 TTGTTGACAAACAC-ATGGTGGCTT
1 TTGTTGACAAACACAAGGGTGGCTT
59985 TTGTTGACAAACACAAAGGGTGGCTT
1 TTGTTGACAAACAC-AAGGGTGGCTT
60011 TTGTTGAC
1 TTGTTGAC
60019 TAGCCACCCA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 14 0.45
26 17 0.55
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.33
Consensus pattern (25 bp):
TTGTTGACAAACACAAGGGTGGCTT
Found at i:61908 original size:21 final size:22
Alignment explanation
Indices: 61882--61927 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
61872 ATCTGTTGAA
* *
61882 ACTCCACCTGTTTTGGAGTA-T
1 ACTCCACCTGCTGTGGAGTACT
61903 ACTCCACCTGCTGTGGAGTACT
1 ACTCCACCTGCTGTGGAGTACT
61925 ACT
1 ACT
61928 TGTCTGAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.20, C:0.28, G:0.20, T:0.33
Consensus pattern (22 bp):
ACTCCACCTGCTGTGGAGTACT
Found at i:64541 original size:27 final size:27
Alignment explanation
Indices: 64511--64578 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
64501 AAGCCTCCAT
*
64511 ATTTTTGACAAACAAAAAGGAAACACC
1 ATTTTTGACAAACAAAAAGGAAACACA
* * * *
64538 ATTTTTGACAAATACAAAGTAACCACA
1 ATTTTTGACAAACAAAAAGGAAACACA
*
64565 ATTGTTGACAAACA
1 ATTTTTGACAAACA
64579 CATGGTGGCT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.49, C:0.18, G:0.10, T:0.24
Consensus pattern (27 bp):
ATTTTTGACAAACAAAAAGGAAACACA
Found at i:64597 original size:24 final size:25
Alignment explanation
Indices: 64566--64623 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 25
64556 GTAACCACAA
*
64566 TTGTTGACAAACAC-ATGGTGGCTT
1 TTGTTGACAAACACAAGGGTGGCTT
64590 TTGTTGACAAACACAAAGGGTGGCTT
1 TTGTTGACAAACAC-AAGGGTGGCTT
64616 TTGTTGAC
1 TTGTTGAC
64624 TAGCCACCCA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 14 0.45
26 17 0.55
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.33
Consensus pattern (25 bp):
TTGTTGACAAACACAAGGGTGGCTT
Found at i:65840 original size:20 final size:20
Alignment explanation
Indices: 65769--65846 Score: 77
Period size: 20 Copynumber: 3.8 Consensus size: 20
65759 AAAAACCCAG
* * *
65769 ATGTATCGATCCAATGATAA
1 ATGTATCGATACATTTATAA
65789 ATGTATCGATACAATTTGA-AA
1 ATGTATCGATAC-ATTT-ATAA
* *
65810 CATGGATCGATACATTTATTA
1 -ATGTATCGATACATTTATAA
65831 ATGTATCGATACATTT
1 ATGTATCGATACATTT
65847 CCTTGGCAGT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
20 27 0.56
21 9 0.19
22 12 0.25
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTTATAA
Found at i:66686 original size:21 final size:21
Alignment explanation
Indices: 66662--66719 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
66652 ATAAAAGTTA
*
66662 CATTTTTTCATCCAAAAATTG
1 CATTATTTCATCCAAAAATTG
* **
66683 CATTCTTTCATCCAACCATTG
1 CATTATTTCATCCAAAAATTG
*
66704 CATCATTTCATCCAAA
1 CATTATTTCATCCAAA
66720 TACACATTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.31, C:0.28, G:0.03, T:0.38
Consensus pattern (21 bp):
CATTATTTCATCCAAAAATTG
Found at i:70920 original size:6 final size:6
Alignment explanation
Indices: 70911--70945 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
70901 TGATGATGAT
* *
70911 AATAAC AATAAT AATAAC AATAAT AATAAC AATAA
1 AATAAC AATAAC AATAAC AATAAC AATAAC AATAA
70946 AAAGAAGCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.69, C:0.09, G:0.00, T:0.23
Consensus pattern (6 bp):
AATAAC
Found at i:70924 original size:12 final size:12
Alignment explanation
Indices: 70909--70945 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
70899 GATGATGATG
70909 ATAATAACAATA
1 ATAATAACAATA
70921 ATAATAACAATA
1 ATAATAACAATA
70933 ATAATAACAATA
1 ATAATAACAATA
70945 A
1 A
70946 AAAGAAGCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAATAACAATA
Done.