Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1896
Parameters: 2 7 7 80 10 50 1000
Length:  61902

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2666--2704
19
2.2
16
86
13
51
61
2
0
35
1.10
3566--3661
40
2.4
41
89
3
149
39
8
13
38
1.75
5722--5772
16
3.1
17
74
20
54
47
5
1
45
1.38
7687--7727
18
2.3
18
100
0
82
17
9
17
56
1.67
11683--11747
33
2.0
33
84
6
87
67
3
23
6
1.27
15060--15091
2
16.0
2
100
0
64
50
0
0
50
1.00
16517--16567
23
2.2
23
82
6
59
41
3
7
47
1.51
17242--17275
12
3.0
12
87
12
54
29
0
0
70
0.87
17662--17693
15
2.2
15
94
5
57
75
0
18
6
1.01
28538--28580
22
2.0
22
85
0
59
65
4
0
30
1.13
29169--29207
2
19.5
2
83
0
51
41
0
2
56
1.13
29165--29210
10
4.6
10
88
0
74
39
0
2
58
1.10
34560--34656
22
4.3
22
73
17
74
56
0
3
40
1.15
34607--34656
15
3.6
14
76
23
52
56
0
0
44
0.99
34615--34653
19
2.0
20
90
5
62
56
0
0
43
0.99
34675--34731
16
3.6
16
83
2
62
47
3
5
43
1.43
34692--34746
15
3.6
15
85
2
65
54
3
1
40
1.28
34704--34759
15
3.6
15
80
7
67
55
3
0
41
1.17
38088--38133
23
2.0
23
100
0
92
26
26
17
30
1.97
42271--42299
2
14.5
2
100
0
58
51
0
48
0
1.00
44947--45035
2
46.0
2
78
14
80
46
2
4
47
1.35
45888--45939
26
2.0
27
84
3
70
28
3
1
65
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52330--52380
20
2.9
16
81
18
57
56
1
0
41
1.10
53527--53750
113
1.9
115
84
5
301
38
5
11
43
1.65
54897--54930
2
17.0
2
100
0
68
50
0
0
50
1.00
56459--56531
14
5.3
14
79
9
60
32
2
4
60
1.30
56460--56520
14
4.4
14
78
12
63
32
3
4
59
1.35
57975--58007
17
1.9
17
93
0
57
21
0
0
78
0.75
58801--58862
16
3.8
16
74
19
56
25
0
0
74
0.82
58804--58856
27
2.0
27
88
0
79
30
0
0
69
0.88
58871--58901
9
3.4
9
95
0
53
51
22
3
22
1.62
58957--58988
2
17.0
2
87
12
50
50
0
0
50
1.00
58957--58994
12
3.2
12
82
17
53
52
0
0
47
1.00
60113--60593
216
2.2
215
93
2
804
40
7
16
35
1.77

Tables:   1

The End!