genome.fa.s1898.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1898
Parameters: 2 7 7 80 10 50 1000
Length:  95539

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
769--817	24	2.1	24	85	11	66	46	0	0	53	1.00
1221--1268	16	3.1	16	85	11	57	58	0	0	41	0.98
1232--1289	29	2.0	30	86	3	82	51	0	1	46	1.11
1280--1340	20	2.8	23	76	20	69	37	0	0	62	0.96
1797--2613	409	2.0	408	97	0	1546	29	19	18	31	1.96
5520--5544	10	2.5	10	100	0	50	64	0	28	8	1.22
8765--8832	27	2.5	27	97	0	127	19	7	42	30	1.78
11034--11198	20	7.8	20	69	17	102	38	11	16	32	1.85
11005--11229	88	2.5	88	86	5	319	41	11	16	30	1.84
11966--12117	46	3.3	46	83	4	155	33	17	26	21	1.96
12217--12791	28	20.5	28	84	5	633	24	17	29	29	1.97
12219--12793	223	2.6	222	82	4	708	24	17	29	29	1.97
12807--12839	13	2.4	14	85	5	50	39	12	15	33	1.84
13010--13059	26	1.9	26	95	0	91	36	4	24	36	1.74
14066--14117	16	3.4	16	84	10	74	0	0	13	86	0.57
14066--14118	11	4.7	11	84	11	72	0	0	13	86	0.56
14068--14120	26	2.0	26	85	7	72	0	0	15	84	0.61
29958--30200	80	3.1	78	79	5	256	26	22	13	37	1.91
30062--30219	80	2.0	80	86	2	219	29	24	12	34	1.91
36368--36429	30	2.1	30	81	6	72	22	29	14	33	1.94
36497--37030	62	8.6	62	84	0	584	24	23	19	32	1.98
36497--37045	186	2.9	186	83	2	647	24	23	19	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37063--37450	44	9.1	43	75	11	284	19	25	13	40	1.89
37114--37269	78	2.0	79	83	3	199	19	26	16	37	1.92
37066--37396	129	2.6	125	82	7	391	18	25	15	40	1.90
43202--43330	52	2.5	52	93	0	222	29	16	17	37	1.91
43406--43458	20	2.7	20	91	2	90	39	16	11	32	1.85
44361--45195	49	17.6	48	79	9	882	32	17	24	24	1.97
44353--45198	92	9.0	92	90	4	1237	32	17	25	24	1.97
44689--44756	21	3.2	21	63	19	50	33	17	23	25	1.96
45200--45361	33	5.0	33	82	8	197	19	16	33	30	1.94
45200--45361	65	2.5	66	83	6	197	19	16	33	30	1.94
45358--46019	33	20.5	33	75	12	459	34	13	32	19	1.91
45369--46019	131	5.0	133	81	9	617	33	14	32	19	1.92
45358--46006	98	6.7	98	78	9	554	33	13	32	19	1.91
45402--46066	167	4.1	160	78	11	516	33	14	32	20	1.92
45396--45822	67	6.5	65	75	14	221	34	13	32	19	1.91
45855--45974	30	4.2	28	84	6	109	31	15	31	21	1.94
45760--46066	60	5.0	59	73	14	196	32	14	30	21	1.93
45364--46103	33	23.0	32	74	14	289	33	14	31	20	1.92
45855--46103	31	8.1	30	78	10	236	33	14	29	22	1.94
46203--46240	16	2.3	17	86	4	51	26	5	23	44	1.74
47065--47119	16	3.5	15	77	20	58	0	9	9	81	0.87
47056--47106	24	2.1	24	92	0	84	0	11	5	82	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47368--47403	9	3.9	9	89	7	54	5	0	2	91	0.49
47370--47402	17	1.9	17	93	0	57	6	0	3	90	0.52
47368--47403	19	1.9	18	88	5	54	5	0	2	91	0.49
54218--54346	52	2.5	52	98	0	249	28	17	17	35	1.93
54417--54484	32	2.1	32	88	0	100	36	16	10	36	1.82
55213--55398	80	2.3	79	88	1	264	28	23	10	37	1.88
59311--59363	11	4.5	11	77	13	61	16	3	1	77	1.01
59908--60632	85	8.6	84	78	5	532	36	19	27	16	1.93
59918--60533	42	14.6	43	74	7	346	36	19	27	16	1.93
59918--60632	169	4.2	169	76	6	529	36	19	27	17	1.93
60744--60901	44	3.6	44	83	5	205	38	15	25	20	1.92
63958--63991	14	2.3	15	90	5	52	11	8	0	79	0.94
65662--65745	33	2.5	34	81	9	93	19	19	11	50	1.78
66135--66225	29	3.4	27	72	22	84	43	8	20	26	1.81
66105--66237	14	9.7	14	67	18	66	46	9	19	24	1.80
66130--66237	52	2.1	52	91	0	171	45	9	20	25	1.80
66466--66509	3	15.7	3	81	13	58	31	0	0	68	0.90
66460--66519	14	4.6	14	78	14	65	30	0	0	70	0.88
66469--66517	11	4.5	11	77	10	55	28	0	0	71	0.86
67051--67593	80	6.9	80	74	11	386	36	11	23	28	1.90
67060--67593	160	3.4	156	80	7	555	36	11	23	28	1.89
70434--70458	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70534--70571	20	1.9	20	88	0	58	31	10	18	39	1.85
70595--70634	20	2.0	20	95	0	71	32	12	15	40	1.84
70600--70638	20	2.0	20	90	5	62	35	10	17	35	1.84
75345--75400	20	2.7	21	89	10	80	42	12	16	28	1.84
75345--75423	20	3.8	20	79	9	70	39	11	13	35	1.81
76884--76925	11	3.7	11	93	3	66	71	0	4	23	1.05
76884--76925	6	7.3	6	78	10	52	71	0	4	23	1.05
80628--80687	21	2.9	21	78	19	63	50	0	1	48	1.11
80656--80707	25	2.2	22	83	10	59	46	0	0	53	1.00
80651--80707	22	2.6	22	84	13	66	49	0	0	50	1.00

Tables:   1

The End!