Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold190
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1396844
ACGTcount: A:0.19, C:0.10, G:0.11, T:0.19
Warning! 567192 characters in sequence are not A, C, G, or T
File 1 of 5
Found at i:5994 original size:28 final size:27
Alignment explanation
Indices: 5961--6054 Score: 91
Period size: 28 Copynumber: 3.4 Consensus size: 27
5951 AACGGGGCTA
5961 GAGTATCCCCTCAGAAATAACAGGGTTG
1 GAGTATCCCCTCAGAAATAAC-GGGTTG
* *
5989 GAGTATCCCC-GATGAAATAATGGGGTTG
1 GAGTATCCCCTCA-GAAATAA-CGGGTTG
** *
6017 GAGTATCCCCTTGGAAATAACGGCGTTA
1 GAGTATCCCCTCAGAAATAACGG-GTTG
*
6045 GAGTTTCCCC
1 GAGTATCCCC
6055 GACTATGAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
27 3 0.05
28 52 0.95
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (27 bp):
GAGTATCCCCTCAGAAATAACGGGTTG
Found at i:6114 original size:79 final size:79
Alignment explanation
Indices: 6012--6165 Score: 186
Period size: 79 Copynumber: 1.9 Consensus size: 79
6002 GAAATAATGG
* * * * *
6012 GGTTGGAGTATCCCCTTGGAAATAAC-GGCGTTAGAGTTTCCCCGACTATGAA-AAATTGGTGTT
1 GGTTAGAGTATCCCCTCGAAAATAACAAG-GTTAGAGTATCCCCGA-TATGAACAAATTGGTGTT
6075 TTAAAAATAAAATCGA
64 TTAAAAATAAAATCGA
* * *
6091 GGTTAGAGTATCCCCTCGAAAATAACAAGGTTGGAGTATCCCCGATTTTAACAAATTGGTGTTTT
1 GGTTAGAGTATCCCCTCGAAAATAACAAGGTTAGAGTATCCCCGATATGAACAAATTGGTGTTTT
**
6156 GGAAATAAAA
66 AAAAATAAAA
6166 ACATGAATGA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.92
80 1 0.02
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (79 bp):
GGTTAGAGTATCCCCTCGAAAATAACAAGGTTAGAGTATCCCCGATATGAACAAATTGGTGTTTT
AAAAATAAAATCGA
Found at i:8579 original size:13 final size:13
Alignment explanation
Indices: 8561--8590 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8551 GTAAACCCAG
8561 AATGTATCGATAC
1 AATGTATCGATAC
*
8574 AATGTATTGATAC
1 AATGTATCGATAC
8587 AATG
1 AATG
8591 AATAATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:8609 original size:62 final size:63
Alignment explanation
Indices: 8512--8640 Score: 215
Period size: 62 Copynumber: 2.1 Consensus size: 63
8502 AAAATGCCTG
* *
8512 AATGTATCGATACATTGAAAAATGTATCGATACATCTGGGT-AAACCCAGAATGTATCGATAC
1 AATGTATCGATACAATGAAAAATGTATCGATACATCTGGGTAAAACCCAAAATGTATCGATAC
* *
8574 AATGTATTGATACAATGAATAATGTATCGATACATCTGGGTAAAACCCAAAATGTATCGATAC
1 AATGTATCGATACAATGAAAAATGTATCGATACATCTGGGTAAAACCCAAAATGTATCGATAC
8637 AATG
1 AATG
8641 AACAATGTAT
Statistics
Matches: 62, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
62 38 0.61
63 24 0.39
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (63 bp):
AATGTATCGATACAATGAAAAATGTATCGATACATCTGGGTAAAACCCAAAATGTATCGATAC
Found at i:8630 original size:30 final size:30
Alignment explanation
Indices: 8530--8637 Score: 103
Period size: 30 Copynumber: 3.5 Consensus size: 30
8520 GATACATTGA
8530 AAAATGTATCGATACATCTGGGT-AAACCC
1 AAAATGTATCGATACATCTGGGTAAAACCC
* * * * * **
8559 AGAATGTATCGATACAATGTATTGATACAA-TG
1 AAAATGTATCGATAC-A--TCTGGGTAAAACCC
8591 AATAATGTATCGATACATCTGGGTAAAACCC
1 AA-AATGTATCGATACATCTGGGTAAAACCC
8622 AAAATGTATCGATACA
1 AAAATGTATCGATACA
8638 ATGAACAATG
Statistics
Matches: 59, Mismatches: 14, Indels: 11
0.70 0.17 0.13
Matches are distributed among these distances:
29 14 0.24
30 22 0.37
31 2 0.03
32 6 0.10
33 15 0.25
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.27
Consensus pattern (30 bp):
AAAATGTATCGATACATCTGGGTAAAACCC
Found at i:9487 original size:41 final size:41
Alignment explanation
Indices: 9436--9557 Score: 129
Period size: 45 Copynumber: 2.9 Consensus size: 41
9426 AATGAAGTGC
* *
9436 ATCCTACTCTTTGAGGACACAGGAAAAAAGAAAAAAAAAGT
1 ATCCTGCTCTTTGAGGACAAAGGAAAAAAGAAAAAAAAAGT
*
9477 ATCCTGCTCTTTGAGGACAAAAGG-AAAAAGAAGGAAATGAAATGT
1 ATCCTGCTCTTTGAGGAC-AAAGGAAAAAAGAA--AAA--AAAAGT
* * * *
9522 GTCCTGCTCTTTGAGGGCAAAGGAGAAAAGGAAAAA
1 ATCCTGCTCTTTGAGGACAAAGGAAAAAAGAAAAAA
9558 GCATCATGCT
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
41 26 0.38
42 4 0.06
43 6 0.09
44 5 0.07
45 27 0.40
ACGTcount: A:0.45, C:0.13, G:0.24, T:0.18
Consensus pattern (41 bp):
ATCCTGCTCTTTGAGGACAAAGGAAAAAAGAAAAAAAAAGT
Found at i:9517 original size:86 final size:87
Alignment explanation
Indices: 9394--9557 Score: 222
Period size: 86 Copynumber: 1.9 Consensus size: 87
9384 AAGTGCGTCT
* * * *
9394 TGCTCTTTGAGAACCAGAAGGGAAAAGAAGGAAATGAAGTGCATCCTACTCTTTGAGGACACAGG
1 TGCTCTTTGAGAACCAAAAGGAAAAAGAAGGAAATGAAATGCATCCTACTCTTTGAGGACAAAGG
9459 AAAAAAGAAAAAAAAAGTATCC
66 AAAAAAGAAAAAAAAAGTATCC
* ** * *
9481 TGCTCTTTGAGGA-CAAAAGGAAAAAGAAGGAAATGAAATGTGTCCTGCTCTTTGAGGGCAAAGG
1 TGCTCTTTGAGAACCAAAAGGAAAAAGAAGGAAATGAAATGCATCCTACTCTTTGAGGACAAAGG
* *
9545 AGAAAAGGAAAAA
66 AAAAAAGAAAAAA
9558 GCATCATGCT
Statistics
Matches: 66, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
86 54 0.82
87 12 0.18
ACGTcount: A:0.44, C:0.13, G:0.26, T:0.18
Consensus pattern (87 bp):
TGCTCTTTGAGAACCAAAAGGAAAAAGAAGGAAATGAAATGCATCCTACTCTTTGAGGACAAAGG
AAAAAAGAAAAAAAAAGTATCC
Found at i:9536 original size:45 final size:42
Alignment explanation
Indices: 9225--9551 Score: 195
Period size: 41 Copynumber: 7.7 Consensus size: 42
9215 GAAGGGGGCA
* ** * * *
9225 TCCTACTCTTTGAGGATTAAGG-AAAAGGAGAAAGAAATGGG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAGAAGAAATAAATGTG
* * * * * **
9266 TCCTGATCCTTGGGGACTAAGGAAAAA-AGGAAATAAAATGCA
1 TCCTGCTCTTTGAGGACAAAGGAAAAAGAAGAAAT-AAATGTG
* * *
9308 TCCTGC-CTTTTGAAGACAAAGGAAACATG-A-AATTAAATGTG
1 TCCTGCTC-TTTGAGGACAAAGGAAA-AAGAAGAAATAAATGTG
* * * * *
9349 TCTTGCTTTTTGAGGACAAATGAAAAAGGAG-AATAAAGTGCG
1 TCCTGCTCTTTGAGGACAAAGGAAAAAGAAGAAATAAA-TGTG
* * * *
9391 TCTTGCTCTTTGAGAACCAGAAGGGAAAAGAAGGAAATGAA-GTG
1 TCCTGCTCTTTGAGGA-CA-AAGGAAAAAGAA-GAAATAAATGTG
* * * *
9435 CATCCTACTCTTTGAGGACACAGGAAAAAAGAA-AAA-AAAAGTA
1 --TCCTGCTCTTTGAGGACAAAGG-AAAAAGAAGAAATAAATGTG
9478 TCCTGCTCTTTGAGGACAAAAGGAAAAAGAAGGAAATGAAATGTG
1 TCCTGCTCTTTGAGGAC-AAAGGAAAAAGAA-GAAAT-AAATGTG
*
9523 TCCTGCTCTTTGAGGGCAAAGGAGAAAAG
1 TCCTGCTCTTTGAGGACAAAGGA-AAAAG
9552 GAAAAAGCAT
Statistics
Matches: 217, Mismatches: 46, Indels: 42
0.71 0.15 0.14
Matches are distributed among these distances:
40 2 0.01
41 77 0.35
42 53 0.24
43 11 0.05
44 20 0.09
45 36 0.17
46 18 0.08
ACGTcount: A:0.41, C:0.13, G:0.25, T:0.21
Consensus pattern (42 bp):
TCCTGCTCTTTGAGGACAAAGGAAAAAGAAGAAATAAATGTG
Found at i:9778 original size:62 final size:61
Alignment explanation
Indices: 9589--10013 Score: 471
Period size: 62 Copynumber: 6.9 Consensus size: 61
9579 AGGAGAAAAA
* * ** *
9589 AAAAGGCGTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTCATGTGGGCTTTGAAAA-G
1 AAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGC-TTCAAAAGG
* * *
9650 AAAAGGCATCCTACTCTATGAGGACTAAAAGGTGCCACCAACTTGTATGGGCTTTGC-AAAGA
1 AAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGC-TT-CAAAAGG
**
9712 AAAAGGTGTCCTACTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTCAAAAGG
1 AAAAGGCATCCTACTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTCAAAAGG
* * * *
9774 AAAAGGCATCCTGCTCTTTGAGGACT-AAAGAGTGCCACCAGCTTGTGTGGGCTTTGAAAAGA
1 AAAAGGCATCCTACTCTTTGAGGACTAAAAG-GTGCCACCAACTTGTGTGGGC-TTCAAAAGG
* * * * *
9836 AAAAGGTATCCTGCTCTTTGAGGATTAGAAAGGTGCCACCAACTTGTGTAGGCTTCGAAAGG
1 AAAAGGCATCCTACTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTCAAAAGG
* * * * ** * *
9898 AAAAGGCGTCCTACTCTTTAAGGTCTAAAAAGGTGCCACCAGCTCATGTGGGCTTTAAAAAG
1 AAAAGGCATCCTACTCTTTGAGGACT-AAAAGGTGCCACCAACTTGTGTGGGCTTCAAAAGG
* * *
9960 AAAAGGCATCCTGCTTTTTGAGGACT-AAAGGTTACCACCAACTTGTGTGGGCTT
1 AAAAGGCATCCTACTCTTTGAGGACTAAAAGG-TGCCACCAACTTGTGTGGGCTT
10014 TGAAAGGCAT
Statistics
Matches: 306, Mismatches: 48, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
60 9 0.03
61 91 0.30
62 158 0.52
63 44 0.14
64 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (61 bp):
AAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTCAAAAGG
Found at i:9778 original size:124 final size:123
Alignment explanation
Indices: 9583--10013 Score: 539
Period size: 124 Copynumber: 3.5 Consensus size: 123
9573 GGGCAAAGGA
* * ** *
9583 GAAAA-AAAAAGGCGTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTCATGTGGGCTTTGAA
1 GAAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGC-TTCAA
* * *
9647 AA-GAAAAGGCATCCTACTCTATGAGGACTAAAAGGTGCCACCAACTTGTATGGGCTTT
65 AAGGAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTT
* **
9705 GCAAAGAAAAAGGTGTCCTACTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTCAA
1 GAAAAGAAAAAGGCATCCTACTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTCAA
*
9770 AAGGAAAAGGCATCCTGCTCTTTGAGGACT-AAAGAGTGCCACCAGCTTGTGTGGGCTTT
65 AAGGAAAAGGCATCCTACTCTTTGAGGACTAAAAG-GTGCCACCAGCTTGTGTGGGCTTT
* * * * *
9829 GAAAAGAAAAAGGTATCCTGCTCTTTGAGGATTAGAAAGGTGCCACCAACTTGTGTAGGCTTCGA
1 GAAAAGAAAAAGGCATCCTACTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTCAA
* * * **
9894 AAGGAAAAGGCGTCCTACTCTTTAAGGTCTAAAAAGGTGCCACCAGCTCATGTGGGCTTT
65 AAGGAAAAGGCATCCTACTCTTTGAGGACT-AAAAGGTGCCACCAGCTTGTGTGGGCTTT
* * * *
9954 AAAAAG-AAAAGGCATCCTGCTTTTTGAGGACT-AAAGGTTACCACCAACTTGTGTGGGCTT
1 GAAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAAAGG-TGCCACCAACTTGTGTGGGCTT
10014 TGAAAGGCAT
Statistics
Matches: 274, Mismatches: 28, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
122 9 0.03
123 57 0.21
124 177 0.65
125 27 0.10
126 4 0.01
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (123 bp):
GAAAAGAAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTCAAA
AGGAAAAGGCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTT
Found at i:9970 original size:186 final size:185
Alignment explanation
Indices: 9584--10018 Score: 597
Period size: 186 Copynumber: 2.4 Consensus size: 185
9574 GGCAAAGGAG
* * * **
9584 AAAAA-AAAAGGCGTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTCATGTGGGCTTTGAAA
1 AAAAAGAAAAGGCATCCTGCTCTTTGAGGACTAAAGAGTGCCACCAACTTGTGTGGGCTTTGAAA
* *
9648 AGAAAAGGCATCCTACTCTATGAGGACTAAAAGGTGCCACCAACTTGTATGGGCTTTGCAAAGAA
66 AGAAAAGGCATCCTACTCTATGAGGACTAAAAGGTGCCACCAACTTGTATAGGCTTCGCAAAGAA
* * * **
9713 AAAGGTGTCCTACTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTC
131 AAAGGCGTCCTACTCTTTAAGGACTAAAAAGGTGCCACCAACTCATGTGGGCTTC
* *
9768 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAGAGTGCCACCAGCTTGTGTGGGCTTTGAAA
1 AAAAAGAAAAGGCATCCTGCTCTTTGAGGACTAAAGAGTGCCACCAACTTGTGTGGGCTTTGAAA
* * * * *
9833 AGAAAAAGGTATCCTGCTCTTTGAGGATTAGAAAGGTGCCACCAACTTGTGTAGGCTTCG-AAAG
66 AG-AAAAGGCATCCTACTCTATGAGGACTA-AAAGGTGCCACCAACTTGTATAGGCTTCGCAAAG
* * * *
9897 GAAAAGGCGTCCTACTCTTTAAGGTCTAAAAAGGTGCCACCAGCTCATGTGGGCTTT
129 AAAAAGGCGTCCTACTCTTTAAGGACTAAAAAGGTGCCACCAACTCATGTGGGCTTC
* *
9954 AAAAAGAAAAGGCATCCTGCTTTTTGAGGACTAAAG-GTTACCACCAACTTGTGTGGGCTTTGAA
1 AAAAAGAAAAGGCATCCTGCTCTTTGAGGACTAAAGAG-TGCCACCAACTTGTGTGGGCTTTGAA
10018 A
65 A
10019 GGCATCCTGC
Statistics
Matches: 220, Mismatches: 27, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
184 4 0.02
185 56 0.25
186 134 0.61
187 26 0.12
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (185 bp):
AAAAAGAAAAGGCATCCTGCTCTTTGAGGACTAAAGAGTGCCACCAACTTGTGTGGGCTTTGAAA
AGAAAAGGCATCCTACTCTATGAGGACTAAAAGGTGCCACCAACTTGTATAGGCTTCGCAAAGAA
AAAGGCGTCCTACTCTTTAAGGACTAAAAAGGTGCCACCAACTCATGTGGGCTTC
Found at i:11133 original size:1 final size:1
Alignment explanation
Indices: 11127--11180 Score: 63
Period size: 1 Copynumber: 54.0 Consensus size: 1
11117 CTTTTCTCTC
* * * * *
11127 TTTTTTTTTGTTTTTTTTGTTTTTTTGTTTTTTTTTTGTTTTTTTGTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
11181 AAAAAAGAAT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (1 bp):
T
Found at i:11140 original size:9 final size:9
Alignment explanation
Indices: 11128--11180 Score: 81
Period size: 9 Copynumber: 5.9 Consensus size: 9
11118 TTTTCTCTCT
11128 TTTTTTTTG
1 TTTTTTTTG
11137 TTTTTTTTG
1 TTTTTTTTG
11146 -TTTTTTTG
1 TTTTTTTTG
*
11154 TTTTTTTTT
1 TTTTTTTTG
11163 TGTTTTTTTG
1 T-TTTTTTTG
11173 TTTTTTTT
1 TTTTTTTT
11181 AAAAAAGAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
8 8 0.20
9 24 0.60
10 8 0.20
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:11140 original size:19 final size:17
Alignment explanation
Indices: 11129--11180 Score: 86
Period size: 19 Copynumber: 2.9 Consensus size: 17
11119 TTTCTCTCTT
11129 TTTTTTTGTTTTTTTTG
1 TTTTTTTGTTTTTTTTG
11146 TTTTTTTGTTTTTTTTTTG
1 TTTTTTTG--TTTTTTTTG
11165 TTTTTTTGTTTTTTTT
1 TTTTTTTGTTTTTTTT
11181 AAAAAAGAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.48
19 17 0.52
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (17 bp):
TTTTTTTGTTTTTTTTG
Found at i:11180 original size:28 final size:28
Alignment explanation
Indices: 11127--11179 Score: 99
Period size: 27 Copynumber: 1.9 Consensus size: 28
11117 CTTTTCTCTC
11127 TTTTTTTTTGTTTTTTTTGTTTTTTTGT
1 TTTTTTTTTGTTTTTTTTGTTTTTTTGT
11155 TTTTTTTTTG-TTTTTTTGTTTTTTT
1 TTTTTTTTTGTTTTTTTTGTTTTTTT
11180 TAAAAAAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 15 0.60
28 10 0.40
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (28 bp):
TTTTTTTTTGTTTTTTTTGTTTTTTTGT
Found at i:17043 original size:13 final size:13
Alignment explanation
Indices: 17025--17081 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
17015 CATAAAGTGT
17025 TGTATCGATACAA
1 TGTATCGATACAA
17038 TGTATCGATACATAA
1 TGTATCGATAC--AA
*
17053 GTGTTGTATCGATAAAA
1 ----TGTATCGATACAA
17070 TGTATCGATACA
1 TGTATCGATACA
17082 TAAGTTTTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 22 0.61
15 2 0.06
17 2 0.06
19 10 0.28
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:17060 original size:32 final size:32
Alignment explanation
Indices: 17005--17102 Score: 169
Period size: 32 Copynumber: 3.0 Consensus size: 32
16995 TTCAATGATT
17005 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACAT-AAGTGTTGTATCGATACAA
*
17038 TGTATCGATACATAAGTGTTGTATCGATAAAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
17070 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
17102 T
1 T
17103 TTAAGCTACT
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
32 49 0.79
33 13 0.21
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:17062 original size:19 final size:18
Alignment explanation
Indices: 17003--17100 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
16993 AATTCAATGA
17003 TTTGTATCGATACATAAAG
1 TTTGTATCGATACAT-AAG
17022 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
17038 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
17054 TGTTGTATCGATA-A-AA-
1 T-TTGTATCGATACATAAG
17070 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
17086 TTTTGTATCGATACA
1 -TTTGTATCGATACA
17101 ATTTAAGCTA
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 21 0.32
14 1 0.02
15 4 0.06
17 4 0.06
18 1 0.02
19 23 0.35
20 12 0.18
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:17161 original size:13 final size:13
Alignment explanation
Indices: 17143--17167 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17133 ATTACTCAAA
17143 TGTATCGATACAT
1 TGTATCGATACAT
17156 TGTATCGATACA
1 TGTATCGATACA
17168 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:17217 original size:32 final size:32
Alignment explanation
Indices: 17176--17252 Score: 145
Period size: 32 Copynumber: 2.4 Consensus size: 32
17166 CACTGATCTT
17176 TGTATCGATACATGCAGGCAAATTGGCCCAGA
1 TGTATCGATACATGCAGGCAAATTGGCCCAGA
*
17208 TGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATGCAGGCAAATTGGCCCAGA
17240 TGTATCGATACAT
1 TGTATCGATACAT
17253 TATAAAATGT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (32 bp):
TGTATCGATACATGCAGGCAAATTGGCCCAGA
Found at i:24200 original size:17 final size:17
Alignment explanation
Indices: 24178--24210 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24168 AACACACAAT
*
24178 CAAAAAAAGAAAAAAAA
1 CAAAAAAACAAAAAAAA
24195 CAAAAAAACAAAAAAA
1 CAAAAAAACAAAAAAA
24211 GGTGCAAAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.88, C:0.09, G:0.03, T:0.00
Consensus pattern (17 bp):
CAAAAAAACAAAAAAAA
Found at i:24504 original size:22 final size:20
Alignment explanation
Indices: 24477--24553 Score: 77
Period size: 21 Copynumber: 3.6 Consensus size: 20
24467 GAGAAGAGAG
24477 AAAAGAAAAAAAAAGAAACAA
1 AAAAGAAAAAAAAA-AAACAA
24498 AACAAGAAAGAAAAAAAAACAA
1 AA-AAGAAA-AAAAAAAAACAA
*
24520 AAAA-AATAAAAAAAATAATAA
1 AAAAGAA-AAAAAAAA-AACAA
24541 AAAA-ACAAAAAAA
1 AAAAGA-AAAAAAA
24554 GGGAAAAACC
Statistics
Matches: 50, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
20 9 0.18
21 20 0.40
22 15 0.30
23 6 0.12
ACGTcount: A:0.86, C:0.05, G:0.05, T:0.04
Consensus pattern (20 bp):
AAAAGAAAAAAAAAAAACAA
Found at i:24507 original size:26 final size:24
Alignment explanation
Indices: 24477--24550 Score: 78
Period size: 26 Copynumber: 2.9 Consensus size: 24
24467 GAGAAGAGAG
24477 AAAAGAAAAAAAAAGAAACAAAACA
1 AAAAGAAAAAAAAA-AAACAAAACA
* *
24502 AGAAAGAAAAAAAAACAAAAAAAATA
1 A-AAAGAAAAAAAAA-AAACAAAACA
24528 AAAA-AAATAATAAAAAAACAAAA
1 AAAAGAAA-AA-AAAAAAACAAAA
24551 AAAGGGAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
24 3 0.07
25 13 0.31
26 26 0.62
ACGTcount: A:0.85, C:0.05, G:0.05, T:0.04
Consensus pattern (24 bp):
AAAAGAAAAAAAAAAAACAAAACA
Found at i:24561 original size:1 final size:1
Alignment explanation
Indices: 24477--24553 Score: 55
Period size: 1 Copynumber: 77.0 Consensus size: 1
24467 GAGAAGAGAG
* * * * * * * * * *
24477 AAAAGAAAAAAAAAGAAACAAAACAAGAAAGAAAAAAAAACAAAAAAAATAAAAAAAATAATAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
24542 AAAACAAAAAAA
1 AAAAAAAAAAAA
24554 GGGAAAAACC
Statistics
Matches: 54, Mismatches: 22, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.86, C:0.05, G:0.05, T:0.04
Consensus pattern (1 bp):
A
Found at i:25577 original size:31 final size:31
Alignment explanation
Indices: 25542--26243 Score: 395
Period size: 31 Copynumber: 22.4 Consensus size: 31
25532 CCTCAATTTA
* *
25542 GTGGCATCTTTTCTTCTAAGTCCACGACTCC
1 GTGGCACCTTTTCTTCTAAGTCCACAACTCC
* * *
25573 GTGGCACCTTTTTTTCAAAGCCCACAACTCC
1 GTGGCACCTTTTCTTCTAAGTCCACAACTCC
* *
25604 GTGGCACTCTTTTTCCCTTTTTAAAGCCCACAACTCC
1 GTGGCAC-C-TTTT--C-TTCT-AAGTCCACAACTCC
*
25641 GTGGCACC--TT-TT-TAAGCCCACAACTCC
1 GTGGCACCTTTTCTTCTAAGTCCACAACTCC
* *
25668 ATGGCACTCTTTTTCCTTCTAAGTCCACGACTCC
1 GTGGCAC-C-TTTT-CTTCTAAGTCCACAACTCC
* * *
25702 GTGGCACCCTTTTTCTTTTTAAAGCCCACAACTCT
1 GTGGCA-CC-TTTTC-TTCT-AAGTCCACAACTCC
* *
25737 GTGGCACCTTTTTCATTTTAAAGCCCACAACTCC
1 GTGGCACC-TTTTC-TTCT-AAGTCCACAACTCC
* *
25771 GTGGCACCTTCTT-TTCAAAGTCCACAATTCC
1 GTGGCACCTT-TTCTTCTAAGTCCACAACTCC
* *
25802 GTGGCACC----CTTTTAAGTCCACAACTCT
1 GTGGCACCTTTTCTTCTAAGTCCACAACTCC
* ** *
25829 GTGGCATCTTTTTTCCTTCTTTTCAAAACCCACAACTCT
1 GTGGCA-C-CTTTT-CTTC---T--AAGTCCACAACTCC
* * *
25868 GTGGCATCTTTGTCCTTTTTAAAGCCCACAACTCC
1 GTGGCACCTTT-T-C-TTCT-AAGTCCACAACTCC
*
25903 GTGGCACTCTTTTTCCTTCTAAGTCCACAACTCT
1 GTGGCAC-C-TTTT-CTTCTAAGTCCACAACTCC
* *
25937 GTGGCACC----CGTT-TAAGCCCACAACTCG
1 GTGGCACCTTTTC-TTCTAAGTCCACAACTCC
* * *
25964 GTGGCAGCTTGTTCCTTTTAAGTCCACGACTCC
1 GTGGCACCTT-TT-CTTCTAAGTCCACAACTCC
*
25997 GTGGCACCTTCTT-TTCAAAGTCCACAACTCC
1 GTGGCACCTT-TTCTTCTAAGTCCACAACTCC
* *
26028 GTGGCACCTTCTT-TTCAAAGTCCACAATTCC
1 GTGGCACCTT-TTCTTCTAAGTCCACAACTCC
* * *
26059 GTGGCACC----CTTTTAAGTCCACGACTCT
1 GTGGCACCTTTTCTTCTAAGTCCACAACTCC
* *
26086 GTGGCACCTTCTT-TTCAAAGTCCACAATTCC
1 GTGGCACCTT-TTCTTCTAAGTCCACAACTCC
* * *
26117 GTGGCACC----CTTTTAAGTCCACGACTCT
1 GTGGCACCTTTTCTTCTAAGTCCACAACTCC
*
26144 GTGGCACCTTCTT-TTCAAAGTCCACAACTCC
1 GTGGCACCTT-TTCTTCTAAGTCCACAACTCC
* *
26175 GTGGCACCTTCTT-TTCAAAGTCCACAATTCC
1 GTGGCACCTT-TTCTTCTAAGTCCACAACTCC
*
26206 GTGGCACC----CTTTTAAGTCCACAACTCC
1 GTGGCACCTTTTCTTCTAAGTCCACAACTCC
*
26233 GTGGCATCTTT
1 GTGGCACCTTT
26244 CTCCTTCCCA
Statistics
Matches: 538, Mismatches: 75, Indels: 117
0.74 0.10 0.16
Matches are distributed among these distances:
27 125 0.23
28 5 0.01
29 2 0.00
31 181 0.34
32 5 0.01
33 36 0.07
34 85 0.16
35 40 0.07
36 8 0.01
37 28 0.05
38 3 0.01
39 20 0.04
ACGTcount: A:0.20, C:0.33, G:0.14, T:0.32
Consensus pattern (31 bp):
GTGGCACCTTTTCTTCTAAGTCCACAACTCC
Found at i:25652 original size:27 final size:28
Alignment explanation
Indices: 25622--25680 Score: 93
Period size: 27 Copynumber: 2.1 Consensus size: 28
25612 CTTTTTCCCT
*
25622 TTTTAAAGCCCACAACTCCGTGGCAC-C
1 TTTTAAAGCCCACAACTCCATGGCACTC
*
25649 TTTTTAAGCCCACAACTCCATGGCACTC
1 TTTTAAAGCCCACAACTCCATGGCACTC
25677 TTTT
1 TTTT
25681 TCCTTCTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 24 0.83
28 5 0.17
ACGTcount: A:0.24, C:0.34, G:0.12, T:0.31
Consensus pattern (28 bp):
TTTTAAAGCCCACAACTCCATGGCACTC
Found at i:25742 original size:69 final size:69
Alignment explanation
Indices: 25648--26035 Score: 254
Period size: 69 Copynumber: 5.9 Consensus size: 69
25638 TCCGTGGCAC
** * * *
25648 CTTTTT-AAGCCCACAACTCCATGGCACTCTTTTTCCTTCT-AAGTCCACGACTCCGTGGCACCC
1 CTTTTTAAAGCCCACAACTCTGTGGCAC-CTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACCC
25711 TTTTT
65 TTTTT
*
25716 CTTTTTAAAGCCCACAACTCTGTGGCACCTTTTTCATTTTAAAGCCCACAACTCCGTGGCA-CC-
1 CTTTTTAAAGCCCACAACTCTGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACCCT
25779 --TT
66 TTTT
* * * * * * * *
25781 CTTTTCAAAGTCCACAATTCCGTGGCA-C-----CCTTTT-AAGTCCACAACTCTGTGGCATCTT
1 CTTTTTAAAGCCCACAACTCTGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACCCT
25839 TTTT
66 TTTT
* * *
25843 CCTTCTTTTCAAAACCCACAACTCTGTGGCATCTTTGTCCTTTTTAAAGCCCACAACTCCGTGGC
1 -C-T-TTTT-AAAGCCCACAACTCTGTGGCACCTTTTTCC-TTTTAAAGCCCACAACTCCGTGGC
*
25908 ACTCTTTTT
61 ACCCTTTTT
* * * * * *
25917 CCTTCT-AAGTCCACAACTCTGTGGCA-C-----CCGTTT-AAGCCCACAACTCGGTGGCA-GCT
1 CTTTTTAAAGCCCACAACTCTGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACCCT
*
25973 TGTT
66 TTTT
* * * * *
25977 CCTTTT-AAGTCCACGACTCCGTGGCACC---TT-CTTTTCAAAGTCCACAACTCCGTGGCACC
1 CTTTTTAAAGCCCACAACTCTGTGGCACCTTTTTCCTTTT-AAAGCCCACAACTCCGTGGCACC
26036 TTCTTTTCAA
Statistics
Matches: 257, Mismatches: 39, Indels: 51
0.74 0.11 0.15
Matches are distributed among these distances:
58 18 0.07
59 6 0.02
60 28 0.11
61 20 0.08
62 9 0.04
63 3 0.01
64 20 0.08
65 28 0.11
66 17 0.07
67 1 0.00
68 19 0.07
69 55 0.21
71 3 0.01
72 2 0.01
73 5 0.02
74 23 0.09
ACGTcount: A:0.20, C:0.33, G:0.14, T:0.33
Consensus pattern (69 bp):
CTTTTTAAAGCCCACAACTCTGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACCCT
TTTT
Found at i:25821 original size:27 final size:29
Alignment explanation
Indices: 25622--25834 Score: 137
Period size: 34 Copynumber: 6.9 Consensus size: 29
25612 CTTTTTCCCT
*
25622 TTTTAAAGCCCACAACTCCGTGGCACCT-
1 TTTTAAAGTCCACAACTCCGTGGCACCTC
* * *
25650 TTTT-AAGCCCACAACTCCATGGCACTCTTT
1 TTTTAAAGTCCACAACTCCGTGGCAC-C-TC
* *
25680 TTCCTTCTAAGTCCACGACTCCGTGGCACCCTTTTTC
1 TT--TT-AAAGTCCACAACTCCGTGGCA-CC----TC
* *
25717 TTTTTAAAGCCCACAACTCTGTGGCACCTTTTTC
1 -TTTTAAAGTCCACAACTCCGTGGCACC----TC
*
25751 ATTTTAAAGCCCACAACTCCGTGGCACCTTC
1 -TTTTAAAGTCCACAACTCCGTGGCACC-TC
*
25782 TTTTCAAAGTCCACAATTCCGTGGCACC-C
1 TTTT-AAAGTCCACAACTCCGTGGCACCTC
*
25811 TTTT-AAGTCCACAACTCTGTGGCA
1 TTTTAAAGTCCACAACTCCGTGGCA
25835 TCTTTTTTCC
Statistics
Matches: 157, Mismatches: 15, Indels: 27
0.79 0.08 0.14
Matches are distributed among these distances:
27 38 0.24
28 5 0.03
29 6 0.04
30 6 0.04
31 24 0.15
32 2 0.01
34 52 0.33
35 18 0.11
36 2 0.01
37 2 0.01
38 2 0.01
ACGTcount: A:0.22, C:0.33, G:0.13, T:0.31
Consensus pattern (29 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTC
Found at i:25873 original size:39 final size:38
Alignment explanation
Indices: 25819--25922 Score: 135
Period size: 35 Copynumber: 2.8 Consensus size: 38
25809 CCTTTTAAGT
25819 CCACAACTCTGTGGCATCTTTTTTCCTTCTTTTCAAAAC
1 CCACAACTCTGTGGCATCTTTTTTCCTTCTTTT-AAAAC
* *
25858 CCACAACTCTGTGGCATC-TTTGTCC-T-TTTTAAAGC
1 CCACAACTCTGTGGCATCTTTTTTCCTTCTTTTAAAAC
*
25893 CCACAACTCCGTGGCA-CTCTTTTTCCTTCT
1 CCACAACTCTGTGGCATCT-TTTTTCCTTCT
25923 AAGTCCACAA
Statistics
Matches: 57, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
34 1 0.02
35 19 0.33
36 10 0.18
37 2 0.04
38 7 0.12
39 18 0.32
ACGTcount: A:0.18, C:0.33, G:0.11, T:0.38
Consensus pattern (38 bp):
CCACAACTCTGTGGCATCTTTTTTCCTTCTTTTAAAAC
Found at i:26046 original size:257 final size:259
Alignment explanation
Indices: 25579--26101 Score: 670
Period size: 257 Copynumber: 2.0 Consensus size: 259
25569 CTCCGTGGCA
* * *
25579 CCTTTTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTTAAAGCCCACAACTCCGTG
1 CCTTCTTTTCAAAACCCACAACTCCGTGGCACTCTTTGTCCCTTTTTAAAGCCCACAACTCCGTG
* *
25644 GCACCTTTTTAAGCCCACAACTCCATGGCACTCTTTTTCCTTCTAAGTCCACGACTCCGTGGCAC
66 GCACCTTTTTAAGCCCACAACTCCATGGCACTC----TCCTTCTAAGCCCACAACTCCGTGGCAC
* * *
25709 CCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACCTTTTTCATTTTAAAGCCCACAACTCCGTG
127 CCTTGTTCCTTTTAAAGCCCACAACTCCGTGGCACC--TTTCATTTTAAAGCCCACAACTCCGTG
*
25774 GCACCTTCTTTTCAAAGTCCACAATTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATCTT
190 GCACCTTCTTTTCAAAGTCCACAATTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCTT
25839 -TTTT
255 CTTTT
*
25843 CCTTCTTTTCAAAACCCACAACTCTGTGGCA-TCTTTGT-CCTTTTTAAAGCCCACAACTCCGTG
1 CCTTCTTTTCAAAACCCACAACTCCGTGGCACTCTTTGTCCCTTTTTAAAGCCCACAACTCCGTG
* ** * *
25906 GCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCAC-C-CGTT-TAAGCCCACAACTCGGTGG
66 GCAC-C---TT--TT-TAAGCCCACAACTCCATGGCACTCTCCTTCTAAGCCCACAACTCCGTGG
* * * *
25968 CA-GCTTGTTCCTTTT-AAGTCCACGACTCCGTGGCACC-TTC-TTTTCAAAGTCCACAACTCCG
124 CACCCTTGTTCCTTTTAAAGCCCACAACTCCGTGGCACCTTTCATTTT-AAAGCCCACAACTCCG
*
26029 TGGCACCTTCTTTTCAAAGTCCACAATTCCGTGGCACCCTTTTAAGTCCACGACTCTGTGGCACC
188 TGGCACCTTCTTTTCAAAGTCCACAATTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACC
26094 TTCTTTT
253 TTCTTTT
26101 C
1 C
26102 AAAGTCCACA
Statistics
Matches: 230, Mismatches: 20, Indels: 24
0.84 0.07 0.09
Matches are distributed among these distances:
256 4 0.02
257 83 0.36
258 5 0.02
260 19 0.08
261 10 0.04
262 47 0.20
263 10 0.04
264 28 0.12
266 2 0.01
268 3 0.01
269 19 0.08
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.33
Consensus pattern (259 bp):
CCTTCTTTTCAAAACCCACAACTCCGTGGCACTCTTTGTCCCTTTTTAAAGCCCACAACTCCGTG
GCACCTTTTTAAGCCCACAACTCCATGGCACTCTCCTTCTAAGCCCACAACTCCGTGGCACCCTT
GTTCCTTTTAAAGCCCACAACTCCGTGGCACCTTTCATTTTAAAGCCCACAACTCCGTGGCACCT
TCTTTTCAAAGTCCACAATTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCTTCTTTT
Found at i:26090 original size:89 final size:85
Alignment explanation
Indices: 25884--26238 Score: 413
Period size: 89 Copynumber: 4.0 Consensus size: 85
25874 TCTTTGTCCT
* * * * * * *
25884 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCCGTT
1 TTTT-AAGTCCACGACTCCGTGGCAC-CTTCTT--TTCAAAGTCCACAATTCCGTGGCACCCTTT
* *
25949 TAAGCCCACAACTCGGTGGCAGCTTGTTCC
62 TAAGTCCACAACTCCGTGGCA-C-----CC
*
25979 TTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGTCCACAACTCCGTGGCACCTTCTTTTC
1 TTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGTCCACAATTCCGTGGCACC--CTTTT-
*
26044 AAAGTCCACAATTCCGTGGCACCC
63 -AAGTCCACAACTCCGTGGCACCC
*
26068 TTTTAAGTCCACGACTCTGTGGCACCTTCTTTTCAAAGTCCACAATTCCGTGGCACCCTTTTAAG
1 TTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGTCCACAATTCCGTGGCACCCTTTTAAG
* *
26133 TCCACGACTCTGTGGCACCTTC
66 TCCACAACTCCGTGGCACC--C
*
26155 TTTTCAAAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGTCCACAATTCCGTGGCACCCTTTTA
1 TTTT--AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGTCCACAATTCCGTGGCACCCTTTTA
26220 AGTCCACAACTCCGTGGCA
64 AGTCCACAACTCCGTGGCA
26239 TCTTTCTCCT
Statistics
Matches: 234, Mismatches: 18, Indels: 22
0.85 0.07 0.08
Matches are distributed among these distances:
85 19 0.08
87 10 0.04
89 131 0.56
91 24 0.10
93 9 0.04
94 20 0.09
95 21 0.09
ACGTcount: A:0.21, C:0.34, G:0.15, T:0.30
Consensus pattern (85 bp):
TTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGTCCACAATTCCGTGGCACCCTTTTAAG
TCCACAACTCCGTGGCACCC
Found at i:26096 original size:58 final size:58
Alignment explanation
Indices: 25884--26238 Score: 385
Period size: 58 Copynumber: 5.9 Consensus size: 58
25874 TCTTTGTCCT
* * * *
25884 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCAC-CTTCTT--TTCAAAGTCCACAACTCCGTGGCACCC
* * * * * ** *
25946 GTTTAAGCCCACAACTCGGTGGCAGCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTC
1 TTTTAAGTCCACAACTCCGTGGCACCTTCTT--TTCAAAGTCCACAACTCCGTGGCACC--C
*
26008 TTTTCAAAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGTCCACAATTCCGTGGCACCC
1 TTTT--AAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGTCCACAACTCCGTGGCACCC
* * *
26068 TTTTAAGTCCACGACTCTGTGGCACCTTCTTTTCAAAGTCCACAATTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGTCCACAACTCCGTGGCACCC
* *
26126 TTTTAAGTCCACGACTCTGTGGCACCTTCTTTTCAAAGTCCACAACTCCGTGGCACCTTC
1 TTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGTCCACAACTCCGTGGCACC--C
*
26186 TTTTCAAAGTCCACAATTCCGTGGCACC--CTTTT--AAGTCCACAACTCCGTGGCA
1 TTTT--AAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGTCCACAACTCCGTGGCA
26239 TCTTTCTCCT
Statistics
Matches: 263, Mismatches: 22, Indels: 20
0.86 0.07 0.07
Matches are distributed among these distances:
58 128 0.49
60 45 0.17
61 19 0.07
62 48 0.18
64 23 0.09
ACGTcount: A:0.21, C:0.34, G:0.15, T:0.30
Consensus pattern (58 bp):
TTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCAAAGTCCACAACTCCGTGGCACCC
Found at i:26289 original size:32 final size:32
Alignment explanation
Indices: 26253--26688 Score: 559
Period size: 32 Copynumber: 13.7 Consensus size: 32
26243 TCTCCTTCCC
26253 AAAGCCCACACAAGTCGGTGGCAACCCTCTTT
1 AAAGCCCACACAAGTCGGTGGCAACCCTCTTT
* *
26285 AAAGCCCACACAAGTCTGTGGC-A-CC-CATT
1 AAAGCCCACACAAGTCGGTGGCAACCCTCTTT
*
26314 AAAGCCCACACAAGTCGGTGGCAACCTTCTTT
1 AAAGCCCACACAAGTCGGTGGCAACCCTCTTT
*
26346 AAAGCCCACACAAGTCGGTGGCAACCCT-TCTC
1 AAAGCCCACACAAGTCGGTGGCAACCCTCT-TT
*
26378 AAAGCCCACATAAGTCGGTGGCAACCCTCTTT
1 AAAGCCCACACAAGTCGGTGGCAACCCTCTTT
* *
26410 AAAGCCCACACAAGTCTGTGGC-A-CC-CGTT
1 AAAGCCCACACAAGTCGGTGGCAACCCTCTTT
*
26439 AAAGCCCACACAAGTCGGTGGCAACCTTCTTT
1 AAAGCCCACACAAGTCGGTGGCAACCCTCTTT
* *
26471 AAAGCCCACACAAGTCGGTGGTAACCTTCTTT
1 AAAGCCCACACAAGTCGGTGGCAACCCTCTTT
* *
26503 AAAGCCCACACAAGTCAGTGGCAACCCT-TCTC
1 AAAGCCCACACAAGTCGGTGGCAACCCTCT-TT
*
26535 AAAGCCCACACAAGTCGGTGGCAACCCT-TCTC
1 AAAGCCCACACAAGTCGGTGGCAACCCTCT-TT
*
26567 AAAGCCCACACAAGTCGGTGGCAACCCTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTCTTT
*
26599 AAAGCCCACACAAGTTGGTGGCAATCCC-CTTTCT
1 AAAGCCCACACAAGTCGGTGGCAA-CCCTC-TT-T
* * *
26633 AAAGCTCACACAAGTCGGTGGCAACCTTCTTCA
1 AAAGCCCACACAAGTCGGTGGCAACCCTCTT-T
* *
26666 AAATCCCACACAAGTTGGTGGCA
1 AAAGCCCACACAAGTCGGTGGCA
26689 TCTTCCTTTA
Statistics
Matches: 358, Mismatches: 32, Indels: 27
0.86 0.08 0.06
Matches are distributed among these distances:
29 48 0.13
30 6 0.02
31 6 0.02
32 243 0.68
33 31 0.09
34 24 0.07
ACGTcount: A:0.29, C:0.33, G:0.19, T:0.19
Consensus pattern (32 bp):
AAAGCCCACACAAGTCGGTGGCAACCCTCTTT
Found at i:26381 original size:125 final size:125
Alignment explanation
Indices: 26246--26688 Score: 624
Period size: 125 Copynumber: 3.5 Consensus size: 125
26236 GCATCTTTCT
*
26246 CCTTCCCAAAGCCCACACAAGTCGGTGGCAACCCTCTTTAAAGCCCACACAAGTCTGTGGCACCC
1 CCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTCTTTAAAGCCCACACAAGTCTGTGGCACCC
26311 ATTAAAGCCCACACAAGTCGGTGGCAACCTTCTTTAAAGCCCACACAAGTCGGTGGCAAC
66 ATTAAAGCCCACACAAGTCGGTGGCAACCTTCTTTAAAGCCCACACAAGTCGGTGGCAAC
*
26371 CCTTCTCAAAGCCCACATAAGTCGGTGGCAACCCTCTTTAAAGCCCACACAAGTCTGTGGCACCC
1 CCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTCTTTAAAGCCCACACAAGTCTGTGGCACCC
* *
26436 GTTAAAGCCCACACAAGTCGGTGGCAACCTTCTTTAAAGCCCACACAAGTCGGTGGTAA-
66 ATTAAAGCCCACACAAGTCGGTGGCAACCTTCTTTAAAGCCCACACAAGTCGGTGGCAAC
* * * *
26495 CCTTCTTTAAAGCCCACACAAGTCAGTGGCAACCCT-TCTCAAAGCCCACACAAGTCGGTGGCAA
1 CCTTC-TCAAAGCCCACACAAGTCGGTGGCAACCCTCT-TTAAAGCCCACACAAGTCTGTGGC-A
* * * *
26559 CCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTCTCTAAAGCCCACACAAGTTGGTGGCAAT
63 CCCAT-T-AAAGCCCACACAAGTCGGTGGCAACCTTCTTTAAAGCCCACACAAGTCGGTGGCAA-
26624 CC
125 -C
* * * *
26626 CCTT-TCTAAAGCTCACACAAGTCGGTGGCAACCTTCTTCAAAATCCCACACAAGT-TGGTGGCA
1 CCTTCTC-AAAGCCCACACAAGTCGGTGGCAACCCTCTT-TAAAGCCCACACAAGTCT-GTGGCA
26689 TCTTCCTTTA
Statistics
Matches: 285, Mismatches: 21, Indels: 19
0.88 0.06 0.06
Matches are distributed among these distances:
124 6 0.02
125 169 0.59
126 5 0.02
127 1 0.00
128 52 0.18
129 1 0.00
130 27 0.09
131 24 0.08
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.19
Consensus pattern (125 bp):
CCTTCTCAAAGCCCACACAAGTCGGTGGCAACCCTCTTTAAAGCCCACACAAGTCTGTGGCACCC
ATTAAAGCCCACACAAGTCGGTGGCAACCTTCTTTAAAGCCCACACAAGTCGGTGGCAAC
Found at i:26816 original size:49 final size:48
Alignment explanation
Indices: 26694--27079 Score: 379
Period size: 43 Copynumber: 8.1 Consensus size: 48
26684 TGGCATCTTC
* * * *
26694 CTTTAAGTCCAATGTAGTTGGCCTTGAATCAGCACATTGGCAC--C-T
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGGACTTCAT
* * *
26739 C--CAACTCCAATATCGCTGGCCTTGAATCAGCATATTGGGATCTTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGGA-CTTCAT
* * *
26786 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATT-GG----CAC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGGACTTCAT
* *
26829 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGGAC-TTCAT
* *
26878 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT-GG----CAC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGGACTTCAT
* * * *
26921 CTTTAAGTCTAATATCGCTAGCCTTGAATCAGCATATTGGCGCCTTTATCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGG-GAC--T-TCAT
* *
26973 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGG-GAC--T-TCAT
*
27025 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGGA-CTTCAT
27074 CTTTAA
1 CTTTAA
27080 CATTCCTAAG
Statistics
Matches: 285, Mismatches: 34, Indels: 40
0.79 0.09 0.11
Matches are distributed among these distances:
43 105 0.37
44 3 0.01
45 2 0.01
46 1 0.00
47 2 0.01
48 3 0.01
49 78 0.27
50 1 0.00
52 90 0.32
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.32
Consensus pattern (48 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGGACTTCAT
Found at i:26851 original size:92 final size:92
Alignment explanation
Indices: 26684--27079 Score: 510
Period size: 92 Copynumber: 4.2 Consensus size: 92
26674 CACAAGTTGG
* ** *
26684 TGGCATCTTC--CTTTAAGTCCAATGTAGTTGGCCTTGAATCAGCACATTGGCACCTCCAACTCC
1 TGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
26747 AATATCGCTGGCCTTGAATCAGCATAT
66 AATATCGCTGGCCTTGAATCAGCATAT
*
26774 TGGGATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
1 TGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
26839 AATATCGCTGGCCTTGAATCAGCATAT
66 AATATCGCTGGCCTTGAATCAGCATAT
*
26866 TGGCA-CTTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTC
1 TGGCATC-TTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTC
* *
26930 TAATATCGCTAGCCTTGAATCAGCATAT
65 CAATATCGCTGGCCTTGAATCAGCATAT
* * * * *
26958 TGGCGCCTTTATCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTC
1 T-G-GCATCT-TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATT---G-----G-C
* *
27023 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
54 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
*
27062 TGGCACCTTCATCTTTAA
1 TGGCATCTTCATCTTTAA
27080 CATTCCTAAG
Statistics
Matches: 270, Mismatches: 20, Indels: 21
0.87 0.06 0.07
Matches are distributed among these distances:
90 9 0.03
91 1 0.00
92 163 0.60
93 1 0.00
94 3 0.01
95 40 0.15
98 1 0.00
101 10 0.04
102 3 0.01
103 2 0.01
104 37 0.14
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.33
Consensus pattern (92 bp):
TGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
AATATCGCTGGCCTTGAATCAGCATAT
Found at i:26999 original size:52 final size:52
Alignment explanation
Indices: 26921--27070 Score: 246
Period size: 52 Copynumber: 2.9 Consensus size: 52
26911 ACATTGGCAC
* *
26921 CTTTAAGTCTAATATCGCTAGCCTTGAATCAGCATATTGGCGCCTTTATCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCAT
* *
26973 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCAT
* *
27025 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTT
27071 CATCTTTAAC
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 91 1.00
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (52 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCAT
Found at i:27989 original size:13 final size:13
Alignment explanation
Indices: 27971--27996 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27961 ACATAAGTGT
27971 TGTATCGATACAA
1 TGTATCGATACAA
27984 TGTATCGATACAA
1 TGTATCGATACAA
27997 AAGTTTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:27993 original size:32 final size:32
Alignment explanation
Indices: 27952--28016 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
27942 CATAAAGTGT
*
27952 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACAAAAGTGTTGTATCGATACAA
*
27984 TGTATCGATACAAAAGTTTTGTATCGATACAA
1 TGTATCGATACAAAAGTGTTGTATCGATACAA
28016 T
1 T
28017 TTAAGCTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAAGTGTTGTATCGATACAA
Found at i:28015 original size:19 final size:19
Alignment explanation
Indices: 27931--28015 Score: 92
Period size: 19 Copynumber: 4.7 Consensus size: 19
27921 ATTCAATGAT
*
27931 TTGTATCAATACATAAAGTG
1 TTGTATCGATACA-AAAGTG
*
27951 TTGTATCGATACATAAGTG
1 TTGTATCGATACAAAAGTG
27970 TTGTATCGATAC--AA---
1 TTGTATCGATACAAAAGTG
*
27984 -TGTATCGATACAAAAGTT
1 TTGTATCGATACAAAAGTG
28002 TTGTATCGATACAA
1 TTGTATCGATACAA
28016 TTTAAGCTAC
Statistics
Matches: 57, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
13 11 0.19
15 2 0.04
17 2 0.04
19 30 0.53
20 12 0.21
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.35
Consensus pattern (19 bp):
TTGTATCGATACAAAAGTG
Found at i:28075 original size:13 final size:13
Alignment explanation
Indices: 28057--28081 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28047 ATTACTCAAA
28057 TGTATCGATACAT
1 TGTATCGATACAT
28070 TGTATCGATACA
1 TGTATCGATACA
28082 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:28146 original size:52 final size:52
Alignment explanation
Indices: 28090--28218 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
28080 CACTGATCTT
*
28090 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
28142 TGTATCGATAAATGCAGGTAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
28194 TGTATCGATACATGCAGACAAATTT
1 TGTATCGATACATGCAGGCAAATTT
28219 TCATATTTCG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:38977 original size:28 final size:29
Alignment explanation
Indices: 38926--39001 Score: 93
Period size: 28 Copynumber: 2.7 Consensus size: 29
38916 GATAACAACT
* *
38926 GGGGCTGGAGTATCTCC-TTAGAAATAAC
1 GGGGCTGGAGTATCCCCGATAGAAATAAC
*
38954 GGGGCTGGAGTATCCCCGAT-GAAATAAT
1 GGGGCTGGAGTATCCCCGATAGAAATAAC
* *
38982 GGGGTTGAAGTATCCCCGAT
1 GGGGCTGGAGTATCCCCGAT
39002 TATGAAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 41 0.98
29 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (29 bp):
GGGGCTGGAGTATCCCCGATAGAAATAAC
Found at i:39095 original size:51 final size:51
Alignment explanation
Indices: 38984--39100 Score: 146
Period size: 51 Copynumber: 2.3 Consensus size: 51
38974 GAAATAATGG
* * *
38984 GGTTGAAGTATCCCCGATTATGAAAAATTGATGTTTTGGAAATAAAATCAT
1 GGTTGGAGTATCCCCGATTATGAAAAATTAATGTTTTAGAAATAAAATCAT
* * * * *
39035 AGTTAGAGTATCCTCGATTGTGGAAAATTAATGTTTTAGAAATAAAATCGA-
1 GGTTGGAGTATCCCCGATTATGAAAAATTAATGTTTTAGAAATAAAATC-AT
39086 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
39101 TTGGAAATAA
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
51 53 0.98
52 1 0.02
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTAATGTTTTAGAAATAAAATCAT
Found at i:39222 original size:79 final size:79
Alignment explanation
Indices: 39036--39239 Score: 275
Period size: 79 Copynumber: 2.6 Consensus size: 79
39026 TAAAATCATA
* ** * *
39036 GTTAGAGTATCCTCGATTGTGGAAAATTAATGTTTTAGAAATAAAATCGAGGTTGGAGTATCCCC
1 GTTAGAGTATCCTCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGAGGTTAGAGTATCCCC
*
39101 TTGGAAATAACGGG
66 TCGGAAATAACGGG
* * *
39115 GTTAGAGTATCCTCAATTATGAAAAATTGGTGTTTTAAAAATAAAACCGAGGTTAGAGTATCCCC
1 GTTAGAGTATCCTCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGAGGTTAGAGTATCCCC
39180 TCGGAAATAACGGG
66 TCGGAAATAACGGG
* * * *
39194 GTTGGAGTATCAC-CGATTGTAAAAAATTGGTATTTTGGAAATAAAA
1 GTTAGAGTATC-CTCGATTGTGAAAAATTGGTGTTTTAGAAATAAAA
39240 ACATGAATGA
Statistics
Matches: 108, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
79 107 0.99
80 1 0.01
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (79 bp):
GTTAGAGTATCCTCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGAGGTTAGAGTATCCCC
TCGGAAATAACGGG
Found at i:42397 original size:28 final size:28
Alignment explanation
Indices: 42359--42674 Score: 384
Period size: 28 Copynumber: 11.3 Consensus size: 28
42349 CTTTTTAAAT
42359 CCCACAAGTCAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
*
42387 CCCACATGTCAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
* * *
42415 CTCATAAGTCAGTGGCATCCTTTCACAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
* *
42443 CCCACATGTTAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
* *
42471 CCCACATGTCAGTGGCCTCCTTTCAAAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
42499 CCCACAAGTCAGTGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
**
42527 TTCACAAGTCAGTGCGC--CCTTTCAAAG
1 CCCACAAGTCAGTG-GCATCCTTTCAAAG
* * *
42554 CCAATAAGTCAGTGGCACCCTTTCAAAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
* * * *
42582 CCCACAAGTTAGTGGTACCCTTTCCAAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
* * * *
42610 CCCACACGTTAGTGGCACCCTTTCGAAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
* * **
42638 CTCACAAGTCAGTGGCACCCTTTTGAAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
42666 CCCACAAGT
1 CCCACAAGT
42675 TGGTGAAAAC
Statistics
Matches: 252, Mismatches: 33, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
26 2 0.01
27 20 0.08
28 228 0.90
29 2 0.01
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (28 bp):
CCCACAAGTCAGTGGCATCCTTTCAAAG
Found at i:42675 original size:84 final size:84
Alignment explanation
Indices: 42359--42720 Score: 386
Period size: 84 Copynumber: 4.3 Consensus size: 84
42349 CTTTTTAAAT
* * * * * *
42359 CCCACAAGTCAGTGGCATCCTTTCAAAGCCCACATGTCAGTGGCATCCTTTCAAAGCTCATAAGT
1 CCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGT
*
42424 CAGTGGCATCCTTTCACAG
66 CAGTGGCATCCTTTCAAAG
* * *
42443 CCCACATGTTAGTGGCATCCTTTCAAAGCCCACATGTCAGTGGC-CTCCTTTCAAAGCCCACAAG
1 CCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAG
42507 TCAGTGGCATCCTTTCAAAG
65 TCAGTGGCATCCTTTCAAAG
** * * * *
42527 TTCACAAGTCAGT-GCGCCCTTTCAAAGCCAATAAGTCAGTGGCACCCTTTCAAAGCCCACAAGT
1 CCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGT
* * * *
42591 TAGTGGTACCCTTTCCAAG
66 CAGTGGCATCCTTTCAAAG
* * * **
42610 CCCACACGTTAGTGGCACCCTTTCGAAGCTCACAAGTCAGTGGCACCCTTTTGAAGCCCACAAGT
1 CCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGT
** ** *
42675 TGGTGAAAACCTTCTCTAAAG
66 CAGTGGCATCCTT-TC-AAAG
42696 CCCACACAAGTTAGTGGCAACCCTT
1 -CC-CACAAGTTAGTGGC-ACCCTT
42721 CTAAACCTAA
Statistics
Matches: 234, Mismatches: 36, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
83 68 0.29
84 140 0.60
85 2 0.01
86 3 0.01
87 2 0.01
88 13 0.06
89 6 0.03
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (84 bp):
CCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGT
CAGTGGCATCCTTTCAAAG
Found at i:58885 original size:52 final size:52
Alignment explanation
Indices: 58827--58966 Score: 226
Period size: 52 Copynumber: 2.7 Consensus size: 52
58817 AATTGCCTAC
* * *
58827 ATGTATCGATACATTGAAAAATGTATTGATACATTTGGGTTAAAAACCCAAA
1 ATGTATCGATACAATGAAAAATGTATCGATACATTTGGCTTAAAAACCCAAA
* *
58879 ATGTATCGATACAATGAAAAATGTATCAATACATTTGGCTTAAAAACCCAGA
1 ATGTATCGATACAATGAAAAATGTATCGATACATTTGGCTTAAAAACCCAAA
*
58931 ATGTATCGATATAATGAAAAATGTATCGATACATTT
1 ATGTATCGATACAATGAAAAATGTATCGATACATTT
58967 TCTTTCTAGA
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 81 1.00
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.31
Consensus pattern (52 bp):
ATGTATCGATACAATGAAAAATGTATCGATACATTTGGCTTAAAAACCCAAA
Found at i:59045 original size:20 final size:20
Alignment explanation
Indices: 59002--59075 Score: 69
Period size: 20 Copynumber: 3.6 Consensus size: 20
58992 TACATGGTCT
***
59002 TGTATCGATACATTTCAAGCA
1 TGTATCGATACA-TTCACTTA
59023 TGTATCGATACATTCACTTA
1 TGTATCGATACATTCACTTA
*
59043 TGTATCGATAGATT-ACCTTA
1 TGTATCGATACATTCA-CTTA
*
59063 TTTTATCGATACA
1 -TGTATCGATACA
59076 AATTGTCGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
19 1 0.02
20 22 0.49
21 22 0.49
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATTCACTTA
Found at i:61230 original size:13 final size:13
Alignment explanation
Indices: 61206--61231 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
61196 GTGAACCTAA
61206 AGGATATACCTTT
1 AGGATATACCTTT
61219 AGGATATACCTTT
1 AGGATATACCTTT
61232 GGCATGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
AGGATATACCTTT
Found at i:61527 original size:155 final size:151
Alignment explanation
Indices: 61211--61725 Score: 497
Period size: 154 Copynumber: 3.3 Consensus size: 151
61201 CCTAAAGGAT
* * * * * *
61211 ATACCTTTAGGATATACCTTTGGCATGAAAATATCCCAATAACCCTAAAGGATATGAGAAGATCA
1 ATACCTTTAGG-TATACCTTTGACGTGAAAATAT-CTAGTAACTCTAAAGGATATGAAAAGATCA
* * *
61276 TAAAAGGG-TGAACCTATCCT-AAATGCACACCTTTGGTATAAAAGCAACCTAGAGACTACTTAA
64 TAAAAGGGATGAACCTATTCTAAAATGCACA-CTTTGGCATAAAAGCAACCTAGTGACTAC-TAA
61339 GACTCGATTCTAAAAAGATTACCAAA
127 GACTCGATTCTAAAAA-ATTACCAAA
* *
61365 ATGCCTTTATGGTATACCTTTGACGTGAAAATATCTTAGTAACTCTAAAGGATATAAAAAGATCA
1 ATACCTTTA-GGTATACCTTTGACGTGAAAATATC-TAGTAACTCTAAAGGATATGAAAAGATCA
* * *
61430 TAAAAGGGATGAATCTATTCTAAAAGTGCACA-TTTGGCATAAAAGCAACTTGGTGACTATCTAA
64 TAAAAGGGATGAACCTATTCTAAAA-TGCACACTTTGGCATAAAAGCAACCTAGTGACTA-CTAA
* *
61494 AACTCGATTCTATAAAAATTATCAAA
127 GACTCGATTCTA-AAAAATTACCAAA
* * * * * * *
61520 ATACCTTTAGGGTATATCTTTGACGTGAAAGTATCTCGATAA-TCGTAAAAGACACGAAAAGATA
1 ATACCTTTA-GGTATACCTTTGACGTGAAAATATCTAG-TAACTC-TAAAGGATATGAAAAGATC
* *
61584 AGAAAA-GGATGAACCTA-TC-ATAATTGCACACCTTTGGCATAAAAGCAACCTAGTGACTACCT
63 ATAAAAGGGATGAACCTATTCTA-AAATGCACA-CTTTGGCATAAAAGCAACCTAGTGACTA-CT
* * *
61646 AGGACTCGGTCCTAAAGAAATTACCAAA
125 AAGACTCGATTCTAAA-AAATTACCAAA
* * * * *
61674 ATGCCCTTGAGGTATACCTTTGATGTGAAAGTATTCCAGTAA-TCTTAAAGGA
1 AT-ACCTTTAGGTATACCTTTGACGTGAAAATA-TCTAGTAACTC-TAAAGGA
61726 CACATAAAAA
Statistics
Matches: 301, Mismatches: 45, Indels: 30
0.80 0.12 0.08
Matches are distributed among these distances:
152 7 0.02
153 7 0.02
154 155 0.51
155 118 0.39
156 8 0.03
157 6 0.02
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.27
Consensus pattern (151 bp):
ATACCTTTAGGTATACCTTTGACGTGAAAATATCTAGTAACTCTAAAGGATATGAAAAGATCATA
AAAGGGATGAACCTATTCTAAAATGCACACTTTGGCATAAAAGCAACCTAGTGACTACTAAGACT
CGATTCTAAAAAATTACCAAA
Found at i:61688 original size:154 final size:153
Alignment explanation
Indices: 61277--61707 Score: 478
Period size: 155 Copynumber: 2.8 Consensus size: 153
61267 AGAAGATCAT
* * * * *
61277 AAAAGGGTGAACCTATCCTAAATGCACACCTTTGGTATAAAAGCAACCTAGAGACTACTTAAGAC
1 AAAAGGATGAACCTATCATAAATGCACACCTTTGGCATAAAAGCAACCTAGTGACTACCTAAGAC
* * *
61342 TCGATTCTAAAAAGATTACCAAAATGCCTTTATGGTATACCTTTGACGTGAAAATATCTTAGTAA
66 TCGATTCTAAAAA-ATTACCAAAATGCCTTTAGGGTATACCTTTGACGTGAAAGTATCTGAGTAA
* * * * *
61407 CTCTAAAGGATATAAAAAGATCAT
130 CTCTAAAAGACACAAAAAGATAAG
* * * *
61431 AAAAGGGATGAATCTATTC-TAAAAGTGCACA--TTTGGCATAAAAGCAACTTGGTGACTATCTA
1 AAAA-GGATGAACCTA-TCAT-AAA-TGCACACCTTTGGCATAAAAGCAACCTAGTGACTACCTA
* * * *
61493 AAACTCGATTCTATAAAAATTATCAAAATACCTTTAGGGTATATCTTTGACGTGAAAGTATCTCG
62 AGACTCGATTCTA-AAAAATTACCAAAATGCCTTTAGGGTATACCTTTGACGTGAAAGTATCT-G
*
61558 A-TAA-TCGTAAAAGACACGAAAAGATAAG
125 AGTAACTC-TAAAAGACACAAAAAGATAAG
* *
61586 AAAAGGATGAACCTATCATAATTGCACACCTTTGGCATAAAAGCAACCTAGTGACTACCTAGGAC
1 AAAAGGATGAACCTATCATAAATGCACACCTTTGGCATAAAAGCAACCTAGTGACTACCTAAGAC
* * * *
61651 TCGGTCCTAAAGAAATTACCAAAATGCCCTT-GAGGTATACCTTTGATGTGAAAGTAT
66 TCGATTCTAAA-AAATTACCAAAATGCCTTTAG-GGTATACCTTTGACGTGAAAGTAT
61708 TCCAGTAATC
Statistics
Matches: 230, Mismatches: 35, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
152 6 0.03
153 7 0.03
154 92 0.40
155 109 0.47
156 10 0.04
157 6 0.03
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.27
Consensus pattern (153 bp):
AAAAGGATGAACCTATCATAAATGCACACCTTTGGCATAAAAGCAACCTAGTGACTACCTAAGAC
TCGATTCTAAAAAATTACCAAAATGCCTTTAGGGTATACCTTTGACGTGAAAGTATCTGAGTAAC
TCTAAAAGACACAAAAAGATAAG
Found at i:62384 original size:364 final size:364
Alignment explanation
Indices: 61715--62445 Score: 1365
Period size: 364 Copynumber: 2.0 Consensus size: 364
61705 TATTCCAGTA
61715 ATCTTAAAGGACACATAAAAAGATGAGTAATGATGACTTTTACCCTAAGTAGGTAATTTAGATTT
1 ATCTTAAAGGACACATAAAAAGATGAGTAATGATGACTTTTACCCTAAGTAGGTAATTTAGATTT
*
61780 TAAGGTGGCCTATAATGCAATAATGTAATAAAGTCCTTAAATTTTTCAAAATTGCATTTTGTATC
66 TAAGGTGGCCTATAATGCAATAATGCAATAAAGTCCTTAAATTTTTCAAAATTGCATTTTGTATC
*
61845 CTTACGAAAAACTGAAAGAATACAAAAGGTTTAAATATTTTTAGCACCCCACCGAATGACTAGTG
131 CTAACGAAAAACTGAAAGAATACAAAAGGTTTAAATATTTTTAGCACCCCACCGAATGACTAGTG
61910 GAATGCTAGAAATATTTTAAAATATTCTAAATGGACGACTTAGCTTTTTAAAATGACTTATAATG
196 GAATGCTAGAAATATTTTAAAATATTCTAAATGGACGACTTAGCTTTTTAAAATGACTTATAATG
61975 CAAAAATGCAATTAAACCCTAAACTTTTTTAAAATTACATTCCATACCTTCCTAGAGAACCAAAA
261 CAAAAATGCAATTAAACCCTAAACTTTTTTAAAATTACATTCCATACCTTCCTAGAGAACCAAAA
*
62040 GAATATGAAAGTTTTAATATTTTCTATACCCTCTAGAAG
326 GAATATGAAAGTTTTAATATTTCCTATACCCTCTAGAAG
* *
62079 ATCTTAAAGGACACATAAAAAGATGTGTAATGATGACTTTTACCCTAAGTTGGTAATTTAGATTT
1 ATCTTAAAGGACACATAAAAAGATGAGTAATGATGACTTTTACCCTAAGTAGGTAATTTAGATTT
62144 TAAGGTGGCCTATAATGCAATAATGCAATAAAGTCCTTAAATTTTTCAAAATTGCATTTTGTATC
66 TAAGGTGGCCTATAATGCAATAATGCAATAAAGTCCTTAAATTTTTCAAAATTGCATTTTGTATC
*
62209 CTAACGAAAAACTGAAAGAATACAAAAGGTTTAAATATTTTTAGCACCCCACTGAATGACTAGTG
131 CTAACGAAAAACTGAAAGAATACAAAAGGTTTAAATATTTTTAGCACCCCACCGAATGACTAGTG
*
62274 GAATGCTAGAAATATTTTAAAATATTCTAAATGGATGA-TGTAGCTTTTTAAAATGACTTATAAT
196 GAATGCTAGAAATATTTTAAAATATTCTAAATGGACGACT-TAGCTTTTTAAAATGACTTATAAT
* *
62338 GCAAAAATGCAATTAAACCCTAAACTTTTTTAAAATTACATTCCATACCTTCCTGGAGAACCGAA
260 GCAAAAATGCAATTAAACCCTAAACTTTTTTAAAATTACATTCCATACCTTCCTAGAGAACCAAA
62403 AGAATATGAAAGTTTTAATATTTCCTATACCCTCTAGAAG
325 AGAATATGAAAGTTTTAATATTTCCTATACCCTCTAGAAG
62443 ATC
1 ATC
62446 AGAGGAATGT
Statistics
Matches: 357, Mismatches: 9, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
363 1 0.00
364 356 1.00
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (364 bp):
ATCTTAAAGGACACATAAAAAGATGAGTAATGATGACTTTTACCCTAAGTAGGTAATTTAGATTT
TAAGGTGGCCTATAATGCAATAATGCAATAAAGTCCTTAAATTTTTCAAAATTGCATTTTGTATC
CTAACGAAAAACTGAAAGAATACAAAAGGTTTAAATATTTTTAGCACCCCACCGAATGACTAGTG
GAATGCTAGAAATATTTTAAAATATTCTAAATGGACGACTTAGCTTTTTAAAATGACTTATAATG
CAAAAATGCAATTAAACCCTAAACTTTTTTAAAATTACATTCCATACCTTCCTAGAGAACCAAAA
GAATATGAAAGTTTTAATATTTCCTATACCCTCTAGAAG
Found at i:75481 original size:13 final size:13
Alignment explanation
Indices: 75463--75489 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
75453 ACAATATTCC
75463 TTGTATCGATACA
1 TTGTATCGATACA
75476 TTGTATCGATACA
1 TTGTATCGATACA
75489 T
1 T
75490 GGGTTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:77396 original size:22 final size:22
Alignment explanation
Indices: 77371--77412 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
77361 TTCTTAAAGA
*
77371 TTTGACAAAGGGGGAGAAATGC
1 TTTGACAAAGAGGGAGAAATGC
*
77393 TTTGATAAAGAGGGAGAAAT
1 TTTGACAAAGAGGGAGAAAT
77413 ATGTTTATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.05, G:0.33, T:0.21
Consensus pattern (22 bp):
TTTGACAAAGAGGGAGAAATGC
Found at i:78018 original size:13 final size:13
Alignment explanation
Indices: 78000--78026 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
77990 ACATTATGCC
78000 TTGTATCGATACA
1 TTGTATCGATACA
78013 TTGTATCGATACA
1 TTGTATCGATACA
78026 T
1 T
78027 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:78056 original size:20 final size:19
Alignment explanation
Indices: 78010--78066 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
78000 TTGTATCGAT
*
78010 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
* *
78029 TCATTGTATTGATACATGG
1 ACATTGTATCGATACATGG
78048 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
78067 AAACTGGCAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.37
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:78121 original size:20 final size:20
Alignment explanation
Indices: 78096--78168 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
78086 TACCACTGTT
78096 TGTATCGATACATGGTACAA
1 TGTATCGATACATGGTACAA
78116 TGTATCGATACATGGTACAA
1 TGTATCGATACATGGTACAA
* * * *
78136 AGTATCAATACATGCTGA-AT
1 TGTATCGATACATGGT-ACAA
78156 TGTATCGATACAT
1 TGTATCGATACAT
78169 TGCTTGTAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
20 45 0.98
21 1 0.02
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Consensus pattern (20 bp):
TGTATCGATACATGGTACAA
Found at i:79416 original size:20 final size:19
Alignment explanation
Indices: 79370--79426 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
79360 TTGTATCGAT
* *
79370 ACATTGTATCAATACATGT
1 ACATTGTATCGATACATGG
*
79389 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
79408 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
79427 AAACTGGCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:79489 original size:13 final size:13
Alignment explanation
Indices: 79471--79501 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
79461 CAATACATGG
*
79471 TACATTGTATCGA
1 TACATTGTATCAA
79484 TACATTGTATCAA
1 TACATTGTATCAA
79497 TACAT
1 TACAT
79502 GATGAATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (13 bp):
TACATTGTATCAA
Found at i:79497 original size:33 final size:33
Alignment explanation
Indices: 79455--79523 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
79445 CTACCACTAT
* *
79455 TTGTATCAATACATGGT-ACATTGTATCGATACA
1 TTGTATCAATACATGATGA-ATTCTATCGATACA
79488 TTGTATCAATACATGATGAATTCTATCGATACA
1 TTGTATCAATACATGATGAATTCTATCGATACA
79521 TTG
1 TTG
79524 CTTGTAATAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (33 bp):
TTGTATCAATACATGATGAATTCTATCGATACA
Found at i:84911 original size:13 final size:13
Alignment explanation
Indices: 84893--84918 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
84883 CAATTTTTTG
84893 TGTATCGATACAT
1 TGTATCGATACAT
84906 TGTATCGATACAT
1 TGTATCGATACAT
84919 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:84983 original size:21 final size:21
Alignment explanation
Indices: 84957--85032 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
84947 CTGCCAAGAA
*
84957 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
84978 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
84998 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
85019 ATGTATCGATACAT
1 ATGTATCGATACAT
85033 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:85003 original size:20 final size:20
Alignment explanation
Indices: 84978--85050 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
84968 CATCTTTTTT
84978 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
84998 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
85019 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
85039 ATGTATCGATAC
1 ATGTATCGATAC
85051 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:85014 original size:41 final size:41
Alignment explanation
Indices: 84957--85050 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
84947 CTGCCAAGAA
*
84957 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
84998 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
85039 ATGTATCGATAC
1 ATGTATCGATAC
85051 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:87524 original size:13 final size:13
Alignment explanation
Indices: 87506--87544 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
87496 ATAATCACCC
*
87506 TGTATCGATACAG
1 TGTATCGATACAA
87519 TGTATCGATACAA
1 TGTATCGATACAA
87532 TGTATCGATACAA
1 TGTATCGATACAA
87545 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:87555 original size:20 final size:20
Alignment explanation
Indices: 87530--87608 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
87520 GTATCGATAC
87530 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
87550 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
*
87575 GATGTATCGATACACAA-AAA
1 AATGTATCGATACA-AAGAAA
*
87595 CATGTATCGATACA
1 AATGTATCGATACA
87609 TTTTGGACAT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
20 32 0.65
25 16 0.33
26 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:89616 original size:15 final size:15
Alignment explanation
Indices: 89596--89626 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
89586 ATTTCGTTTG
*
89596 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
89611 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
89626 G
1 G
89627 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:93706 original size:13 final size:13
Alignment explanation
Indices: 93688--93713 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
93678 CAATTTTTTG
93688 TGTATCGATACAT
1 TGTATCGATACAT
93701 TGTATCGATACAT
1 TGTATCGATACAT
93714 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:93778 original size:21 final size:21
Alignment explanation
Indices: 93752--93827 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
93742 CTGCCAAGAA
*
93752 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
93773 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
93793 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
93814 ATGTATCGATACAT
1 ATGTATCGATACAT
93828 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:93798 original size:20 final size:20
Alignment explanation
Indices: 93773--93845 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
93763 CATCTTTTTT
93773 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
93793 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
93814 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
93834 ATGTATCGATAC
1 ATGTATCGATAC
93846 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:93809 original size:41 final size:41
Alignment explanation
Indices: 93752--93845 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
93742 CTGCCAAGAA
*
93752 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
93793 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
93834 ATGTATCGATAC
1 ATGTATCGATAC
93846 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:95675 original size:13 final size:13
Alignment explanation
Indices: 95657--95681 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95647 CAACATTCCT
95657 TGTATCGATACAA
1 TGTATCGATACAA
95670 TGTATCGATACA
1 TGTATCGATACA
95682 TGGGTTACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:97868 original size:32 final size:32
Alignment explanation
Indices: 97832--98049 Score: 316
Period size: 32 Copynumber: 6.8 Consensus size: 32
97822 GCTTAGAAGG
*
97832 GCCACCAACTTGTGTGGGCTTT-AGAGAGGGTT
1 GCCACCGACTTGTGTGGGCTTTGAGA-AGGGTT
*
97864 GCCACCGACTTGTGTGTGCTTTGAGAAGGGTT
1 GCCACCGACTTGTGTGGGCTTTGAGAAGGGTT
97896 GCCACCGACTTGTGTGGGCTTTGAGAAGGGTT
1 GCCACCGACTTGTGTGGGCTTTGAGAAGGGTT
* *
97928 GCCCCCGACTTATGTGGGCTTT-AGAAAGGGGATT
1 GCCACCGACTTGTGTGGGCTTTGAG-AA-GGG-TT
*
97962 GCCACCAACTTGTGTGGGCTTT-AGAGAGGGTT
1 GCCACCGACTTGTGTGGGCTTTGAGA-AGGGTT
97994 GCCACCGACTTGTGTGGGCTTTGAGAAGGGTT
1 GCCACCGACTTGTGTGGGCTTTGAGAAGGGTT
*
98026 GCCACTGACTTGTGTGGGCTTTGA
1 GCCACCGACTTGTGTGGGCTTTGA
98050 AAAGAAAAAA
Statistics
Matches: 170, Mismatches: 10, Indels: 12
0.89 0.05 0.06
Matches are distributed among these distances:
31 2 0.01
32 131 0.77
33 13 0.08
34 24 0.14
ACGTcount: A:0.17, C:0.19, G:0.35, T:0.29
Consensus pattern (32 bp):
GCCACCGACTTGTGTGGGCTTTGAGAAGGGTT
Found at i:97983 original size:98 final size:96
Alignment explanation
Indices: 97832--98051 Score: 336
Period size: 98 Copynumber: 2.3 Consensus size: 96
97822 GCTTAGAAGG
* * * *
97832 GCCACCAACTTGTGTGGGCTTTAGAGAGGGTTGCCACCGACTTGTGTGTGCTTT-GAGAAGGGTT
1 GCCACCGACTTGTGTGGGCTTTAGAAAGGGTTGCCACCAACTTGTGTGGGCTTTAGAG-AGGGTT
97896 GCCACCGACTTGTGTGGGCTTTGAGAAGGGTT
65 GCCACCGACTTGTGTGGGCTTTGAGAAGGGTT
* *
97928 GCCCCCGACTTATGTGGGCTTTAGAAAGGGGATTGCCACCAACTTGTGTGGGCTTTAGAGAGGGT
1 GCCACCGACTTGTGTGGGCTTTAGAAA-GGG-TTGCCACCAACTTGTGTGGGCTTTAGAGAGGGT
97993 TGCCACCGACTTGTGTGGGCTTTGAGAAGGGTT
64 TGCCACCGACTTGTGTGGGCTTTGAGAAGGGTT
*
98026 GCCACTGACTTGTGTGGGCTTT-GAAA
1 GCCACCGACTTGTGTGGGCTTTAGAAA
98052 AGAAAAAAGT
Statistics
Matches: 112, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
96 23 0.21
97 7 0.06
98 79 0.71
99 3 0.03
ACGTcount: A:0.18, C:0.19, G:0.35, T:0.29
Consensus pattern (96 bp):
GCCACCGACTTGTGTGGGCTTTAGAAAGGGTTGCCACCAACTTGTGTGGGCTTTAGAGAGGGTTG
CCACCGACTTGTGTGGGCTTTGAGAAGGGTT
Found at i:98076 original size:98 final size:99
Alignment explanation
Indices: 97863--98082 Score: 263
Period size: 98 Copynumber: 2.2 Consensus size: 99
97853 TAGAGAGGGT
* * *
97863 TGCCACCGACTTGTGTGTGCTTT-GAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGT
1 TGCCACCAACGTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGT
* *** *
97927 TGCCCCCGACTTATGTGGGCTTTAGAAAGGGGAT
66 TGCCACCGACTTATGTGGGCTTTAGAAAGAAAAG
*
97961 TGCCACCAACTTGTGTGGGCTTTAGAG-AGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGT
1 TGCCACCAACGTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGT
* *
98025 TGCCACTGACTTGTGTGGGCTTT-GAAAAGAAAAAAG
66 TGCCACCGACTTATGTGGGCTTTAG-AAAG--AAAAG
98061 TGCCA-CAGA-GT-TGTGGGCTTTA
1 TGCCACCA-ACGTGTGTGGGCTTTA
98083 AAAAAAAAAG
Statistics
Matches: 107, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
97 1 0.01
98 93 0.87
99 6 0.06
100 7 0.07
ACGTcount: A:0.20, C:0.18, G:0.34, T:0.28
Consensus pattern (99 bp):
TGCCACCAACGTGTGTGGGCTTTAGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGT
TGCCACCGACTTATGTGGGCTTTAGAAAGAAAAG
Found at i:98081 original size:34 final size:34
Alignment explanation
Indices: 98038--98442 Score: 333
Period size: 35 Copynumber: 12.3 Consensus size: 34
98028 CACTGACTTG
* *
98038 TGTGGGCTTTGAAAAGAAAAAAGTGCCACAGAGT
1 TGTGGACTTTGAAAAGAAAAAAGTGCCACGGAGT
*
98072 TGTGGGCTTT-AAAA-AAAAAAGGTGCCACGGAGT
1 TGTGGACTTTGAAAAGAAAAAA-GTGCCACGGAGT
* * *
98105 TGTGGACTTAGAAAGGAAAAAGAGTGCCACAGAGT
1 TGTGGACTTTGAAAAGAAAAA-AGTGCCACGGAGT
* * *
98140 TGTGGGCTTTAAAAAGAAAAAGGGTGCCACGGAGT
1 TGTGGACTTTGAAAAGAAAAA-AGTGCCACGGAGT
* * * *
98175 TGTGGACTTAGAGAAGAAAAAGGTGCGACGGAGT
1 TGTGGACTTTGAAAAGAAAAAAGTGCCACGGAGT
* * *
98209 TGTGGACTTAGAGAAGAAAAAGGTGCCACGGAGT
1 TGTGGACTTTGAAAAGAAAAAAGTGCCACGGAGT
* * *
98243 TGTGGGCTTTAAAAAGAAAAAGGGTGCCACGGAGT
1 TGTGGACTTTGAAAAGAAAAA-AGTGCCACGGAGT
* * *
98278 TGTGGGCTTTG-AAA-AAAAGA-TGCCACTGAGT
1 TGTGGACTTTGAAAAGAAAAAAGTGCCACGGAGT
** *
98309 CATGGACTTTG--AAGAAAAAA-TGCCACTGAGT
1 TGTGGACTTTGAAAAGAAAAAAGTGCCACGGAGT
* * *
98340 CGTGGACTTTG---AGACAAAA-TGCCACTGAGT
1 TGTGGACTTTGAAAAGAAAAAAGTGCCACGGAGT
* *
98370 TGTGGACTTTG--AAG-AAAAGGATGCCACTGAGT
1 TGTGGACTTTGAAAAGAAAAAAG-TGCCACGGAGT
* * *
98402 TGTGGACTTTG---AGAAAAGATTGCCACTGAGT
1 TGTGGACTTTGAAAAGAAAAAAGTGCCACGGAGT
*
98433 CGTGGACTTT
1 TGTGGACTTT
98443 AAGAAGGTAT
Statistics
Matches: 323, Mismatches: 38, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
30 33 0.10
31 68 0.21
32 31 0.10
33 27 0.08
34 78 0.24
35 85 0.26
36 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.31, T:0.22
Consensus pattern (34 bp):
TGTGGACTTTGAAAAGAAAAAAGTGCCACGGAGT
Found at i:98116 original size:130 final size:130
Alignment explanation
Indices: 97832--98099 Score: 308
Period size: 130 Copynumber: 2.0 Consensus size: 130
97822 GCTTAGAAGG
* * *
97832 GCCACCAACTTGTGTGGGCTTTAGAGAGGGTTGCCACCGACTTGTGTGTGCTTTGAGAAGGGTTG
1 GCCACCAACGTGTGTGGACTTTAGAGAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTG
** * * * * **** *
97897 CCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCCCCGACTTATGTGGGCTTTAGAAAGGGGATT
66 CCACCGACTTGTGTGGGCTTTGAGAAAAGTTGCCACAGACGTATGTGGGCTTTAAAAAAAAAAGT
* *
97962 GCCACCAACTTGTGTGGGCTTTAGAGAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTG
1 GCCACCAACGTGTGTGGACTTTAGAGAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTG
*
98027 CCACTGACTTGTGTGGGCTTTGAAAAGAAAAAAG-TGCCACAGA-GT-TGTGGGCTTTAAAAAAA
66 CCACCGACTTGTGTGGGCTTTG---AG--AAAAGTTGCCACAGACGTATGTGGGCTTTAAAAAAA
98089 AAAGGT
126 AAA-GT
98095 GCCAC
1 GCCAC
98100 GGAGTTGTGG
Statistics
Matches: 119, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
130 85 0.71
132 15 0.13
133 9 0.08
134 7 0.06
135 3 0.03
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.26
Consensus pattern (130 bp):
GCCACCAACGTGTGTGGACTTTAGAGAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTG
CCACCGACTTGTGTGGGCTTTGAGAAAAGTTGCCACAGACGTATGTGGGCTTTAAAAAAAAAAGT
Found at i:98251 original size:103 final size:103
Alignment explanation
Indices: 98038--98295 Score: 380
Period size: 103 Copynumber: 2.5 Consensus size: 103
98028 CACTGACTTG
* * * *
98038 TGTGGGCTTTGAAAAGAAAAA-AGTGCCACAGAGTTGTGGGCTTTAAAAAAAAAAGGTGCCACGG
1 TGTGGGCTTTAAAAAGAAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAAAAAAAGGTGCCACGG
98102 AGTTGTGGACTTAGAAAGGAAAAAGAGTGCCACAGAGT
66 AGTTGTGGACTTAGAAAGGAAAAAGAGTGCCACAGAGT
* *
98140 TGTGGGCTTTAAAAAGAAAAAGGGTGCCACGGAGTTGTGGAC-TTAGAGAAGAAAAAGGTGCGAC
1 TGTGGGCTTTAAAAAGAAAAAGGGTGCCACGGAGTTGTGGACTTTA-A-AAAAAAAAGGTGCCAC
*
98204 GGAGTTGTGGACTTAGAGAA-GAAAAAG-GTGCCACGGAGT
64 GGAGTTGTGGACTTAGA-AAGGAAAAAGAGTGCCACAGAGT
* *
98243 TGTGGGCTTTAAAAAGAAAAAGGGTGCCACGGAGTTGTGGGCTTTGAAAAAAA
1 TGTGGGCTTTAAAAAGAAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAAAAA
98296 GATGCCACTG
Statistics
Matches: 141, Mismatches: 10, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
102 28 0.20
103 71 0.50
104 40 0.28
105 2 0.01
ACGTcount: A:0.36, C:0.11, G:0.33, T:0.20
Consensus pattern (103 bp):
TGTGGGCTTTAAAAAGAAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAAAAAAAGGTGCCACGG
AGTTGTGGACTTAGAAAGGAAAAAGAGTGCCACAGAGT
Found at i:98407 original size:62 final size:64
Alignment explanation
Indices: 98061--98447 Score: 302
Period size: 68 Copynumber: 5.9 Consensus size: 64
98051 AAGAAAAAAG
* * * * * * * *
98061 TGCCACAGAGTTGTGGGCTTTAAAAAAAAAAGGTGCCACGGAGTTGTGGACTTAGAAAGGAAAAA
1 TGCCACGGAGTTGTGGACTTTGAGAAAAAGA-GTGCCACTGAGTTGTGGACTTTG-AA-GAAAAG
98126 GA
63 GA
* * * * * *
98128 GTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAGGGTGCCACGGAGTTGTGGACTTAGAGAAGAA
1 -TGCCACGGAGTTGTGGACTTT---GAGAAAAAGAGTGCCACTGAGTTGTGGACTT--TGAAG-A
98193 AAAGG-
59 AAAGGA
* * * * * *
98198 TGCGACGGAGTTGTGGACTTAGAGAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAA
1 TGCCACGGAGTTGTGGACTTTGAGAA-AAAGA-GTGCCACTGAGTTGTGGACTTT--GAAG-AAA
*
98263 AGGG
61 AGGA
* * ** *
98267 TGCCACGGAGTTGTGGGCTTTGAAAAAAAGA-TGCCACTGAGTCATGGACTTTGAAGAAAA-AA
1 TGCCACGGAGTTGTGGACTTTGAGAAAAAGAGTGCCACTGAGTTGTGGACTTTGAAGAAAAGGA
* * *
98329 TGCCACTGAGTCGTGGACTTTGAGACAAA-A-TGCCACTGAGTTGTGGACTTTGAAGAAAAGGA
1 TGCCACGGAGTTGTGGACTTTGAGAAAAAGAGTGCCACTGAGTTGTGGACTTTGAAGAAAAGGA
* * *
98391 TGCCACTGAGTTGTGGACTTTGAG-AAAAGATTGCCACTGAGTCGTGGACTTT-AAGAA
1 TGCCACGGAGTTGTGGACTTTGAGAAAAAGAGTGCCACTGAGTTGTGGACTTTGAAGAA
98448 GGTATTTGAA
Statistics
Matches: 268, Mismatches: 37, Indels: 34
0.79 0.11 0.10
Matches are distributed among these distances:
61 31 0.12
62 54 0.20
63 24 0.09
64 3 0.01
66 21 0.08
67 3 0.01
68 55 0.21
69 39 0.15
70 22 0.08
71 14 0.05
72 2 0.01
ACGTcount: A:0.34, C:0.13, G:0.31, T:0.22
Consensus pattern (64 bp):
TGCCACGGAGTTGTGGACTTTGAGAAAAAGAGTGCCACTGAGTTGTGGACTTTGAAGAAAAGGA
Found at i:98431 original size:93 final size:92
Alignment explanation
Indices: 98267--98442 Score: 273
Period size: 93 Copynumber: 1.9 Consensus size: 92
98257 AGAAAAAGGG
*
98267 TGCCACGGAGTTGTGGGCTTTGAAAAAAAGATGCCACTGAGTCATGGACTTTGAAGAAAAAATGC
1 TGCCACGGAGTTGTGGACTTTGAAAAAAAGATGCCACTGAGTCATGGACTTTGAAGAAAAAATGC
98332 CACTGAGTCGTGGACTTTGAGACAAAA
66 CACTGAGTCGTGGACTTTGAGACAAAA
* * ** *
98359 TGCCACTGAGTTGTGGACTTTGAAGAAAAGGATGCCACTGAGTTGTGGACTTTG-AGAAAAGATT
1 TGCCACGGAGTTGTGGACTTTGAA-AAAAAGATGCCACTGAGTCATGGACTTTGAAGAAAA-AAT
98423 GCCACTGAGTCGTGGACTTT
64 GCCACTGAGTCGTGGACTTT
98443 AAGAAGGTAT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
92 28 0.37
93 48 0.63
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (92 bp):
TGCCACGGAGTTGTGGACTTTGAAAAAAAGATGCCACTGAGTCATGGACTTTGAAGAAAAAATGC
CACTGAGTCGTGGACTTTGAGACAAAA
Found at i:99419 original size:12 final size:12
Alignment explanation
Indices: 99402--99427 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
99392 TCCCTTCTTC
99402 TTTTTTGTTTGT
1 TTTTTTGTTTGT
99414 TTTTTTGTTTGT
1 TTTTTTGTTTGT
99426 TT
1 TT
99428 CTTCTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (12 bp):
TTTTTTGTTTGT
Found at i:99432 original size:30 final size:30
Alignment explanation
Indices: 99396--99464 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 30
99386 GGTTTTTCCC
**
99396 TTCTTCTTTTTTGTTTGTTTTTTTG-TTTGT
1 TTCTTCTTTTTT-TTTCCTTTTTTGTTTTGT
99426 TTCTTCTTTTTTTTTCCTTTTTTGTTTTGT
1 TTCTTCTTTTTTTTTCCTTTTTTGTTTTGT
99456 TTCTT-TTTT
1 TTCTTCTTTT
99465 GGAAAAGAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
29 14 0.39
30 22 0.61
ACGTcount: A:0.00, C:0.10, G:0.09, T:0.81
Consensus pattern (30 bp):
TTCTTCTTTTTTTTTCCTTTTTTGTTTTGT
Found at i:99453 original size:17 final size:16
Alignment explanation
Indices: 99404--99465 Score: 67
Period size: 16 Copynumber: 4.0 Consensus size: 16
99394 CCTTCTTCTT
*
99404 TTTTGTTTGTTTTTT-
1 TTTTGTTTCTTTTTTG
*
99419 TGTTTGTTTCTTCTTT-
1 T-TTTGTTTCTTTTTTG
*
99435 TTTT-TTCCTTTTTTG
1 TTTTGTTTCTTTTTTG
99450 TTTTGTTTCTTTTTTG
1 TTTTGTTTCTTTTTTG
99466 GAAAAGAACA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
14 8 0.21
15 8 0.21
16 23 0.59
ACGTcount: A:0.00, C:0.08, G:0.11, T:0.81
Consensus pattern (16 bp):
TTTTGTTTCTTTTTTG
Found at i:99729 original size:9 final size:9
Alignment explanation
Indices: 99715--99776 Score: 78
Period size: 9 Copynumber: 7.1 Consensus size: 9
99705 TTTTTCTGTG
99715 TGTTTTTTT
1 TGTTTTTTT
99724 TGTTTTTTT
1 TGTTTTTTT
99733 TG--TTTTT
1 TGTTTTTTT
99740 TG-TTTTTT
1 TGTTTTTTT
99748 TGTTTTTTT
1 TGTTTTTTT
99757 T-TTTTGGTTT
1 TGTTTT--TTT
99767 TGTTTTTTT
1 TGTTTTTTT
99776 T
1 T
99777 TCATCACTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
7 7 0.15
8 11 0.23
9 22 0.46
10 4 0.08
11 4 0.08
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (9 bp):
TGTTTTTTT
Found at i:99731 original size:25 final size:23
Alignment explanation
Indices: 99703--99777 Score: 73
Period size: 24 Copynumber: 3.3 Consensus size: 23
99693 CCTTTGCAAC
*
99703 TTTTTTTCTGTGTGTTTTTTTTGT
1 TTTTTTTTTGTGTG-TTTTTTTGT
* *
99727 TTTTTTTGTTTTTTGTTTTTTTGT
1 TTTTTTT-TTGTGTGTTTTTTTGT
* *
99751 TTTTTTTTTTTG-GTTTTGTT-T
1 TTTTTTTTTGTGTGTTTTTTTGT
99772 TTTTTT
1 TTTTTT
99778 CATCACTTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.16
22 7 0.16
23 4 0.09
24 23 0.51
25 4 0.09
ACGTcount: A:0.00, C:0.01, G:0.13, T:0.85
Consensus pattern (23 bp):
TTTTTTTTTGTGTGTTTTTTTGT
Found at i:99738 original size:29 final size:29
Alignment explanation
Indices: 99713--99767 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
99703 TTTTTTTCTG
99713 TGTGTTTTT-TTTGTTTTTTTT-GTTTTT
1 TGTGTTTTTGTTTGTTTTTTTTGGTTTTT
* *
99740 TGTTTTTTTGTTTTTTTTTTTTGGTTTT
1 TGTGTTTTTGTTTGTTTTTTTTGGTTTT
99768 GTTTTTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 8 0.33
28 11 0.46
29 5 0.21
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (29 bp):
TGTGTTTTTGTTTGTTTTTTTTGGTTTTT
Found at i:99746 original size:37 final size:37
Alignment explanation
Indices: 99705--99777 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 37
99695 TTTGCAACTT
*
99705 TTTTTCTGTGTGTTTTTTTT-GTTTTTTTTGTTTTTTG
1 TTTTTCTGTGTGTTTTTTTTGGTTTTGTTT-TTTTTTG
* * *
99742 TTTTTTTGTTTTTTTTTTTTGGTTTTGTTTTTTTTT
1 TTTTTCTGTGTGTTTTTTTTGGTTTTGTTTTTTTTT
99778 CATCACTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 23 0.74
38 8 0.26
ACGTcount: A:0.00, C:0.01, G:0.14, T:0.85
Consensus pattern (37 bp):
TTTTTCTGTGTGTTTTTTTTGGTTTTGTTTTTTTTTG
Found at i:99772 original size:16 final size:14
Alignment explanation
Indices: 99720--99777 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 14
99710 CTGTGTGTTT
99720 TTTTTGTTTTTTTTG
1 TTTTT-TTTTTTTTG
99735 TTTTTTGTTTTTTTG
1 TTTTTT-TTTTTTTG
*
99750 TTTTTTTTTTTTGG
1 TTTTTTTTTTTTTG
99764 TTTTGTTTTTTTTT
1 TTTT-TTTTTTTTT
99778 CATCACTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
14 12 0.31
15 27 0.69
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (14 bp):
TTTTTTTTTTTTTG
Found at i:99775 original size:8 final size:8
Alignment explanation
Indices: 99718--99761 Score: 65
Period size: 8 Copynumber: 5.6 Consensus size: 8
99708 TTCTGTGTGT
99718 TTTTTTTG
1 TTTTTTTG
99726 TTTTTTT-
1 TTTTTTTG
99733 TGTTTTTTG
1 T-TTTTTTG
99742 TTTTTTTG
1 TTTTTTTG
99750 TTTTTTT-
1 TTTTTTTG
99757 TTTTT
1 TTTTT
99762 GGTTTTGTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
7 6 0.18
8 27 0.79
9 1 0.03
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (8 bp):
TTTTTTTG
Found at i:99792 original size:1 final size:1
Alignment explanation
Indices: 99717--99777 Score: 59
Period size: 1 Copynumber: 61.0 Consensus size: 1
99707 TTTCTGTGTG
* * * * ** *
99717 TTTTTTTTGTTTTTTTTGTTTTTTGTTTTTTTGTTTTTTTTTTTTGGTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
99778 CATCACTTTT
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (1 bp):
T
Found at i:103504 original size:34 final size:35
Alignment explanation
Indices: 103466--103532 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
103456 CCTTACAACA
103466 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
103500 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
103533 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:104017 original size:13 final size:13
Alignment explanation
Indices: 103999--104024 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
103989 AATTTTTTTG
103999 TGTATCGATACAT
1 TGTATCGATACAT
104012 TGTATCGATACAT
1 TGTATCGATACAT
104025 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:104089 original size:21 final size:21
Alignment explanation
Indices: 104063--104138 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
104053 CTGCCAAGAA
*
104063 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
104084 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
104104 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
104125 ATGTATCGATACAT
1 ATGTATCGATACAT
104139 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:104109 original size:20 final size:20
Alignment explanation
Indices: 104084--104156 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
104074 CATCTTTTTT
104084 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
104104 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
104125 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
104145 ATGTATCGATAC
1 ATGTATCGATAC
104157 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:104120 original size:41 final size:41
Alignment explanation
Indices: 104063--104156 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
104053 CTGCCAAGAA
*
104063 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
104104 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
104145 ATGTATCGATAC
1 ATGTATCGATAC
104157 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:105000 original size:175 final size:176
Alignment explanation
Indices: 104799--105158 Score: 706
Period size: 175 Copynumber: 2.1 Consensus size: 176
104789 CCCTTAATCA
104799 AAATTTAT-CATGCAACTAATACCAAACGTTTATGCCAGCTCTCCCCCTTAATACAAGTGTTCTT
1 AAATTTATACATGCAACTAATACCAAACGTTTATGCCAGCTCTCCCCCTTAATACAAGTGTTCTT
104863 CCCTTTAATACAAAGTTTATACAAACTCTCCCCCTTAATACGTTGTCACCCTTAAACCAATAAAC
66 CCCTTTAATACAAAGTTTATACAAACTCTCCCCCTTAATACGTTGTCACCCTTAAACCAATAAAC
104928 AATAATCTCTCCCCC-TTTTGGTTCATAAGCTAAGTTGATAAAACC
131 AATAATCTCTCCCCCTTTTTGGTTCATAAGCTAAGTTGATAAAACC
104973 AAATTTATACATGCAACTAATACCAAACGTTTATGCCAGCTCTCCCCCTTAATACAAGTGTTCTT
1 AAATTTATACATGCAACTAATACCAAACGTTTATGCCAGCTCTCCCCCTTAATACAAGTGTTCTT
105038 CCCTTTAATACAAAGTTTATACAAACTCTCCCCCTTAATACGTTGTCACCCTTAAACCAATAAAC
66 CCCTTTAATACAAAGTTTATACAAACTCTCCCCCTTAATACGTTGTCACCCTTAAACCAATAAAC
105103 AATAATCTCTCCCCCTTTTTGGTTCATAAGCTAAGTTGATAAAACC
131 AATAATCTCTCCCCCTTTTTGGTTCATAAGCTAAGTTGATAAAACC
105149 AAATTTATAC
1 AAATTTATAC
105159 CAATAATTTC
Statistics
Matches: 184, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
174 8 0.04
175 136 0.74
176 40 0.22
ACGTcount: A:0.33, C:0.27, G:0.08, T:0.32
Consensus pattern (176 bp):
AAATTTATACATGCAACTAATACCAAACGTTTATGCCAGCTCTCCCCCTTAATACAAGTGTTCTT
CCCTTTAATACAAAGTTTATACAAACTCTCCCCCTTAATACGTTGTCACCCTTAAACCAATAAAC
AATAATCTCTCCCCCTTTTTGGTTCATAAGCTAAGTTGATAAAACC
Found at i:108264 original size:34 final size:35
Alignment explanation
Indices: 108226--108292 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
108216 CCTTACAACA
108226 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
108260 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
108293 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:108776 original size:13 final size:13
Alignment explanation
Indices: 108758--108783 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
108748 AATTTTTTTG
108758 TGTATCGATACAT
1 TGTATCGATACAT
108771 TGTATCGATACAT
1 TGTATCGATACAT
108784 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:108848 original size:21 final size:21
Alignment explanation
Indices: 108822--108897 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
108812 CTGCCAAGAA
*
108822 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
108843 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
108863 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
108884 ATGTATCGATACAT
1 ATGTATCGATACAT
108898 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:108868 original size:20 final size:20
Alignment explanation
Indices: 108843--108915 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
108833 CATCTTTTTT
108843 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
108863 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
108884 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
108904 ATGTATCGATAC
1 ATGTATCGATAC
108916 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:108879 original size:41 final size:41
Alignment explanation
Indices: 108822--108915 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
108812 CTGCCAAGAA
*
108822 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
108863 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
108904 ATGTATCGATAC
1 ATGTATCGATAC
108916 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:112732 original size:52 final size:52
Alignment explanation
Indices: 112665--112803 Score: 201
Period size: 52 Copynumber: 2.7 Consensus size: 52
112655 AATTTACGTA
*
112665 CATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCCTG
1 CATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTG
* *
112717 CATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTTCCTG
1 CATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTG
* *
112769 AATGTATCGATACA--AAGATCAATGTATCGATACAT
1 CATGTATCGATACATTTA-AT-AATGTATCGATACAT
112804 TTGAGTAATG
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.03
52 77 0.97
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35
Consensus pattern (52 bp):
CATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTG
Found at i:113645 original size:13 final size:13
Alignment explanation
Indices: 113627--113652 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
113617 CAATTTTTTG
113627 TGTATCGATACAT
1 TGTATCGATACAT
113640 TGTATCGATACAT
1 TGTATCGATACAT
113653 ACTTAGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:113667 original size:32 final size:33
Alignment explanation
Indices: 113607--113670 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
113597 TACAAGCCAA
** *
113607 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTAGTGTATCGATACAT
113640 TGTATCGATAC-ATACTTAGTGTATCGATACA
1 TGTATCGATACAATACTTAGTGTATCGATACA
113671 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTAGTGTATCGATACAT
Found at i:114608 original size:13 final size:13
Alignment explanation
Indices: 114590--114615 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
114580 CAATTTTTTG
114590 TGTATCGATACAT
1 TGTATCGATACAT
114603 TGTATCGATACAT
1 TGTATCGATACAT
114616 ACTTAGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:114630 original size:32 final size:33
Alignment explanation
Indices: 114570--114633 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
114560 TACAAGCCAA
** *
114570 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTAGTGTATCGATACAT
114603 TGTATCGATAC-ATACTTAGTGTATCGATACA
1 TGTATCGATACAATACTTAGTGTATCGATACA
114634 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTAGTGTATCGATACAT
Found at i:114745 original size:963 final size:963
Alignment explanation
Indices: 112879--115769 Score: 5782
Period size: 963 Copynumber: 3.0 Consensus size: 963
112869 GGAATTAAAC
112879 CAAGAGGGGGGGTGAATTGGTTCTAATGAAAATTAATAAAACTTTTTCGTAAGCAATGGATAAAT
1 CAAGAGGGGGGGTGAATTGGTTCTAATGAAAATTAATAAAACTTTTTCGTAAGCAATGGATAAAT
112944 AAAAGAGAGTAAGGGATAGAAAGATCAAACACGAGATTTATAGAGGTTCGGTCCAAACACGGCAC
66 AAAAGAGAGTAAGGGATAGAAAGATCAAACACGAGATTTATAGAGGTTCGGTCCAAACACGGCAC
113009 CTACGTCCTCTCTCCTTGGCACTTCCTTGCCAAGTATACCACAATTCACTAACCGAATTGTTTAC
131 CTACGTCCTCTCTCCTTGGCACTTCCTTGCCAAGTATACCACAATTCACTAACCGAATTGTTTAC
113074 CTTTGAGGCTAAGGTATAACCTTACAACACTATCTTTCAAGGCTAAGATAGAAACCTCTCTCTCT
196 CTTTGAGGCTAAGGTATAACCTTACAACACTATCTTTCAAGGCTAAGATAGAAACCTCTCTCTCT
113139 ATCTTTTTCAAAGGCTAAGATAGAACCTCCCAATCACTTAGAGAAAAATACCCCAAATTCTCAAG
261 ATCTTTTTCAAAGGCTAAGATAGAACCTCCCAATCACTTAGAGAAAAATACCCCAAATTCTCAAG
113204 TGATTGCAAACAAGGTTGAACACAACCTTACAAAGAGAACAAATAATCACAAACTAGATATACCT
326 TGATTGCAAACAAGGTTGAACACAACCTTACAAAGAGAACAAATAATCACAAACTAGATATACCT
113269 CTACAAGGTTGGTGTTTGTGGAAGTTTAAGTACAAAGAATACAAAAGAGCTTGACAAAGAATAGA
391 CTACAAGGTTGGTGTTTGTGGAAGTTTAAGTACAAAGAATACAAAAGAGCTTGACAAAGAATAGA
113334 AATAAAAGAATAAAAGCTCTTGAACTTGATTTGGAGTTGTATGAATGATAGAACTTGTTTCTCTT
456 AATAAAAGAATAAAAGCTCTTGAACTTGATTTGGAGTTGTATGAATGATAGAACTTGTTTCTCTT
113399 CACTTCTCTTTCTTCTCTAGCTGATGGAATGTTGTATTTATAGGCTAGATTGATGATATATCCGT
521 CACTTCTCTTTCTTCTCTAGCTGATGGAATGTTGTATTTATAGGCTAGATTGATGATATATCCGT
113464 TGGAGATGAAATAATGGAGTTAATAGCCGTTGTAAACTTGTTGGAGCTTATTATAATGATTTTCC
586 TGGAGATGAAATAATGGAGTTAATAGCCGTTGTAAACTTGTTGGAGCTTATTATAATGATTTTCC
113529 ATGTGAATGTATCGATACAATTTTTGATGTATCGATACATATTTGAAAATATAGCCGTTTCTAGC
651 ATGTGAATGTATCGATACAATTTTTGATGTATCGATACATATTTGAAAATATAGCCGTTTCTAGC
113594 CGTTACAAGCCAATGTATCGATACAATTTTTTGTGTATCGATACATTGTATCGATACATACTTAG
716 CGTTACAAGCCAATGTATCGATACAATTTTTTGTGTATCGATACATTGTATCGATACATACTTAG
113659 TGTATCGATACAAGTTTGGCTACTGCCAAGAGATGTATCGATACATCTTTTTCATGTATCGATAC
781 TGTATCGATACAAGTTTGGCTACTGCCAAGAGATGTATCGATACATCTTTTTCATGTATCGATAC
113724 ATTGCAACATGTATCGATACTTTGAATTGTGTATCGATACTTTTAAGGGTTTTGAAAATTTTAGC
846 ATTGCAACATGTATCGATACTTTGAATTGTGTATCGATACTTTTAAGGGTTTTGAAAATTTTAGC
113789 CTAAGTCAACCTTAATGTATCGATACAAATACCTATGTATCGATACTTTGATA
911 CTAAGTCAACCTTAATGTATCGATACAAATACCTATGTATCGATACTTTGATA
113842 CAAGAGGGGGGGTGAATTGGTTCTAATGAAAATTAATAAAACTTTTTCGTAAGCAATGGATAAAT
1 CAAGAGGGGGGGTGAATTGGTTCTAATGAAAATTAATAAAACTTTTTCGTAAGCAATGGATAAAT
113907 AAAAGAGAGTAAGGGATAGAAAGATCAAACACGAGATTTATAGAGGTTCGGTCCAAACACGGCAC
66 AAAAGAGAGTAAGGGATAGAAAGATCAAACACGAGATTTATAGAGGTTCGGTCCAAACACGGCAC
113972 CTACGTCCTCTCTCCTTGGCACTTCCTTGCCAAGTATACCACAATTCACTAACCGAATTGTTTAC
131 CTACGTCCTCTCTCCTTGGCACTTCCTTGCCAAGTATACCACAATTCACTAACCGAATTGTTTAC
114037 CTTTGAGGCTAAGGTATAACCTTACAACACTATCTTTCAAGGCTAAGATAGAAACCTCTCTCTCT
196 CTTTGAGGCTAAGGTATAACCTTACAACACTATCTTTCAAGGCTAAGATAGAAACCTCTCTCTCT
114102 ATCTTTTTCAAAGGCTAAGATAGAACCTCCCAATCACTTAGAGAAAAATACCCCAAATTCTCAAG
261 ATCTTTTTCAAAGGCTAAGATAGAACCTCCCAATCACTTAGAGAAAAATACCCCAAATTCTCAAG
114167 TGATTGCAAACAAGGTTGAACACAACCTTACAAAGAGAACAAATAATCACAAACTAGATATACCT
326 TGATTGCAAACAAGGTTGAACACAACCTTACAAAGAGAACAAATAATCACAAACTAGATATACCT
114232 CTACAAGGTTGGTGTTTGTGGAAGTTTAAGTACAAAGAATACAAAAGAGCTTGACAAAGAATAGA
391 CTACAAGGTTGGTGTTTGTGGAAGTTTAAGTACAAAGAATACAAAAGAGCTTGACAAAGAATAGA
114297 AATAAAAGAATAAAAGCTCTTGAACTTGATTTGGAGTTGTATGAATGATAGAACTTGTTTCTCTT
456 AATAAAAGAATAAAAGCTCTTGAACTTGATTTGGAGTTGTATGAATGATAGAACTTGTTTCTCTT
114362 CACTTCTCTTTCTTCTCTAGCTGATGGAATGTTGTATTTATAGGCTAGATTGATGATATATCCGT
521 CACTTCTCTTTCTTCTCTAGCTGATGGAATGTTGTATTTATAGGCTAGATTGATGATATATCCGT
114427 TGGAGATGAAATAATGGAGTTAATAGCCGTTGTAAACTTGTTGGAGCTTATTATAATGATTTTCC
586 TGGAGATGAAATAATGGAGTTAATAGCCGTTGTAAACTTGTTGGAGCTTATTATAATGATTTTCC
114492 ATGTGAATGTATCGATACAATTTTTGATGTATCGATACATATTTGAAAATATAGCCGTTTCTAGC
651 ATGTGAATGTATCGATACAATTTTTGATGTATCGATACATATTTGAAAATATAGCCGTTTCTAGC
114557 CGTTACAAGCCAATGTATCGATACAATTTTTTGTGTATCGATACATTGTATCGATACATACTTAG
716 CGTTACAAGCCAATGTATCGATACAATTTTTTGTGTATCGATACATTGTATCGATACATACTTAG
114622 TGTATCGATACAAGTTTGGCTACTGCCAAGAGATGTATCGATACATCTTTTTCATGTATCGATAC
781 TGTATCGATACAAGTTTGGCTACTGCCAAGAGATGTATCGATACATCTTTTTCATGTATCGATAC
114687 ATTGCAACATGTATCGATACTTTGAATTGTGTATCGATACTTTTAAGGGTTTTGAAAATTTTAGC
846 ATTGCAACATGTATCGATACTTTGAATTGTGTATCGATACTTTTAAGGGTTTTGAAAATTTTAGC
114752 CTAAGTCAACCTTAATGTATCGATACAAATACCTATGTATCGATACTTTGATA
911 CTAAGTCAACCTTAATGTATCGATACAAATACCTATGTATCGATACTTTGATA
114805 CAAGAGGGGGGGTGAATTGGTTCTAATGAAAATTAATAAAACTTTTTCGTAAGCAATGGATAAAT
1 CAAGAGGGGGGGTGAATTGGTTCTAATGAAAATTAATAAAACTTTTTCGTAAGCAATGGATAAAT
114870 AAAAGAGAGTAAGGGATAGAAAGATCAAACACGAGATTTATAGAGGTTCGGTCCAAACACGGCAC
66 AAAAGAGAGTAAGGGATAGAAAGATCAAACACGAGATTTATAGAGGTTCGGTCCAAACACGGCAC
114935 CTACGTCCTCTCTCCTTGGCACTTCCTTGCCAAGTATACCACAATTCACTAACCGAATTGTTTAC
131 CTACGTCCTCTCTCCTTGGCACTTCCTTGCCAAGTATACCACAATTCACTAACCGAATTGTTTAC
115000 CTTTGAGGCTAAGGTATAACCTTACAACACTATCTTTCAAGGCTAAGATAGAAACCTCTCTCTCT
196 CTTTGAGGCTAAGGTATAACCTTACAACACTATCTTTCAAGGCTAAGATAGAAACCTCTCTCTCT
115065 ATCTTTTTCAAAGGCTAAGATAGAACCTCCCAATCACTTAGAGAAAAATACCCCAAATTCTCAAG
261 ATCTTTTTCAAAGGCTAAGATAGAACCTCCCAATCACTTAGAGAAAAATACCCCAAATTCTCAAG
115130 TGATTGCAAACAAGGTTGAACACAACCTTACAAAGAGAACAAATAATCACAAACTAGATATACCT
326 TGATTGCAAACAAGGTTGAACACAACCTTACAAAGAGAACAAATAATCACAAACTAGATATACCT
115195 CTACAAGGTTGGTGTTTGTGGAAGTTTAAGTACAAAGAATACAAAAGAGCTTGACAAAGAATAGA
391 CTACAAGGTTGGTGTTTGTGGAAGTTTAAGTACAAAGAATACAAAAGAGCTTGACAAAGAATAGA
115260 AATAAAAGAATAAAAGCTCTTGAACTTGATTTGGAGTTGTATGAATGATAGAACTTGTTTCTCTT
456 AATAAAAGAATAAAAGCTCTTGAACTTGATTTGGAGTTGTATGAATGATAGAACTTGTTTCTCTT
115325 CACTTCTCTTTCTTCTCTAGCTGATGGAATGTTGTATTTATAGGCTAGATTGATGATATATCCGT
521 CACTTCTCTTTCTTCTCTAGCTGATGGAATGTTGTATTTATAGGCTAGATTGATGATATATCCGT
115390 TGGAGATGAAATAATGGAGTTAATAGCCGTTGTAAACTTGTTGGAGCTTATTATAATGATTTTCC
586 TGGAGATGAAATAATGGAGTTAATAGCCGTTGTAAACTTGTTGGAGCTTATTATAATGATTTTCC
115455 ATGTGAATGTATCGATACAATTTTTGATGTATCGATACATATTTGAAAATATAGCCGTTTCTAGC
651 ATGTGAATGTATCGATACAATTTTTGATGTATCGATACATATTTGAAAATATAGCCGTTTCTAGC
115520 CGTTACAAGCCAATGTATCGATACAATTTTTTGTGTATCGATACATTGTATCGATACATACTTAG
716 CGTTACAAGCCAATGTATCGATACAATTTTTTGTGTATCGATACATTGTATCGATACATACTTAG
115585 TGTATCGATACAAGTTTGGCTACTGCCAAGAGATGTATCGATACATCTTTTTCATGTATCGATAC
781 TGTATCGATACAAGTTTGGCTACTGCCAAGAGATGTATCGATACATCTTTTTCATGTATCGATAC
115650 ATTGCAACATGTATCGATACTTTGAATTGTGTATCGATACTTTTAAGGGTTTTGAAAATTTTAGC
846 ATTGCAACATGTATCGATACTTTGAATTGTGTATCGATACTTTTAAGGGTTTTGAAAATTTTAGC
115715 CTAAGTCAACCTTAATGTATCGATACAAATACCTATGTATCGATACTTTGATA
911 CTAAGTCAACCTTAATGTATCGATACAAATACCTATGTATCGATACTTTGATA
115768 CA
1 CA
115770 TTTTAACTTA
Statistics
Matches: 1928, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
963 1928 1.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.32
Consensus pattern (963 bp):
CAAGAGGGGGGGTGAATTGGTTCTAATGAAAATTAATAAAACTTTTTCGTAAGCAATGGATAAAT
AAAAGAGAGTAAGGGATAGAAAGATCAAACACGAGATTTATAGAGGTTCGGTCCAAACACGGCAC
CTACGTCCTCTCTCCTTGGCACTTCCTTGCCAAGTATACCACAATTCACTAACCGAATTGTTTAC
CTTTGAGGCTAAGGTATAACCTTACAACACTATCTTTCAAGGCTAAGATAGAAACCTCTCTCTCT
ATCTTTTTCAAAGGCTAAGATAGAACCTCCCAATCACTTAGAGAAAAATACCCCAAATTCTCAAG
TGATTGCAAACAAGGTTGAACACAACCTTACAAAGAGAACAAATAATCACAAACTAGATATACCT
CTACAAGGTTGGTGTTTGTGGAAGTTTAAGTACAAAGAATACAAAAGAGCTTGACAAAGAATAGA
AATAAAAGAATAAAAGCTCTTGAACTTGATTTGGAGTTGTATGAATGATAGAACTTGTTTCTCTT
CACTTCTCTTTCTTCTCTAGCTGATGGAATGTTGTATTTATAGGCTAGATTGATGATATATCCGT
TGGAGATGAAATAATGGAGTTAATAGCCGTTGTAAACTTGTTGGAGCTTATTATAATGATTTTCC
ATGTGAATGTATCGATACAATTTTTGATGTATCGATACATATTTGAAAATATAGCCGTTTCTAGC
CGTTACAAGCCAATGTATCGATACAATTTTTTGTGTATCGATACATTGTATCGATACATACTTAG
TGTATCGATACAAGTTTGGCTACTGCCAAGAGATGTATCGATACATCTTTTTCATGTATCGATAC
ATTGCAACATGTATCGATACTTTGAATTGTGTATCGATACTTTTAAGGGTTTTGAAAATTTTAGC
CTAAGTCAACCTTAATGTATCGATACAAATACCTATGTATCGATACTTTGATA
Found at i:115571 original size:13 final size:13
Alignment explanation
Indices: 115553--115578 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
115543 CAATTTTTTG
115553 TGTATCGATACAT
1 TGTATCGATACAT
115566 TGTATCGATACAT
1 TGTATCGATACAT
115579 ACTTAGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:115593 original size:32 final size:33
Alignment explanation
Indices: 115533--115596 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
115523 TACAAGCCAA
** *
115533 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTAGTGTATCGATACAT
115566 TGTATCGATAC-ATACTTAGTGTATCGATACA
1 TGTATCGATACAATACTTAGTGTATCGATACA
115597 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTAGTGTATCGATACAT
Found at i:115998 original size:13 final size:13
Alignment explanation
Indices: 115980--116004 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
115970 CAAAAAAGTA
115980 TGTATCGATACAT
1 TGTATCGATACAT
115993 TGTATCGATACA
1 TGTATCGATACA
116005 AAACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:115998 original size:33 final size:33
Alignment explanation
Indices: 115961--116024 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
115951 GATCCTAACA
115961 GTATCGATACAAAAAAGTATGTATCGATACATT
1 GTATCGATACAAAAAAGTATGTATCGATACATT
***
115994 GTATCGATACAAAACTTTATGTATCGATACA
1 GTATCGATACAAAAAAGTATGTATCGATACA
116025 AATCGTTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (33 bp):
GTATCGATACAAAAAAGTATGTATCGATACATT
Found at i:117563 original size:19 final size:20
Alignment explanation
Indices: 117539--117592 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
117529 ACATTATGTT
**
117539 TTGTATCGATACATGTTC-A
1 TTGTATCGATACATGGACAA
117558 TTGTATCGATACATGGACAA
1 TTGTATCGATACATGGACAA
117578 TTGTATCGATACATG
1 TTGTATCGATACATG
117593 AAACTGGCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGGACAA
Found at i:117655 original size:13 final size:13
Alignment explanation
Indices: 117637--117667 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
117627 CGATACATGG
117637 TACATTGTATCGA
1 TACATTGTATCGA
117650 TACATTGTATCGA
1 TACATTGTATCGA
*
117663 CACAT
1 TACAT
117668 GATGAATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:117668 original size:33 final size:33
Alignment explanation
Indices: 117621--117685 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
117611 CTACCACTGT
* * *
117621 TTGTATCGATACATGGT-ACATTGTATCGATACA
1 TTGTATCGACACATGATGA-ATTGTATAGATACA
117654 TTGTATCGACACATGATGAATTGTATAGATAC
1 TTGTATCGACACATGATGAATTGTATAGATAC
117686 GTTGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.35
Consensus pattern (33 bp):
TTGTATCGACACATGATGAATTGTATAGATACA
Found at i:119756 original size:13 final size:13
Alignment explanation
Indices: 119738--119763 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
119728 TACACAAAGT
119738 ATGTATCGATACA
1 ATGTATCGATACA
119751 ATGTATCGATACA
1 ATGTATCGATACA
119764 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:119761 original size:32 final size:33
Alignment explanation
Indices: 119720--119783 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
119710 TAGCCAAACT
**
119720 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
119752 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
119784 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:122016 original size:21 final size:21
Alignment explanation
Indices: 121983--122032 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
121973 TTACAAGTTG
*
121983 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
122005 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
122026 AAATAAA
1 AAATAAA
122033 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:125949 original size:13 final size:13
Alignment explanation
Indices: 125931--125969 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
125921 ACATTTTTCT
125931 TTGTATCGATACA
1 TTGTATCGATACA
125944 TTGTATCGATACA
1 TTGTATCGATACA
*
125957 CTGTATCGATACA
1 TTGTATCGATACA
125970 GGGGGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:126124 original size:20 final size:20
Alignment explanation
Indices: 126081--126126 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
126071 AAATCTTTTG
126081 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
126102 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
126122 CAAAA
1 CAAAA
126127 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Done.