Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold190
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1396844
ACGTcount: A:0.19, C:0.10, G:0.11, T:0.19
Warning! 567192 characters in sequence are not A, C, G, or T
File 4 of 5
Found at i:1123663 original size:18 final size:18
Alignment explanation
Indices: 1123642--1123676 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1123632 GAAAAGAACA
* *
1123642 GAGACTGTTATGAGAATG
1 GAGACTATTACGAGAATG
1123660 GAGACTATTACGAGAAT
1 GAGACTATTACGAGAAT
1123677 CGATGCTTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.09, G:0.29, T:0.26
Consensus pattern (18 bp):
GAGACTATTACGAGAATG
Found at i:1125375 original size:158 final size:158
Alignment explanation
Indices: 1124699--1125856 Score: 394
Period size: 158 Copynumber: 7.3 Consensus size: 158
1124689 CAAAAAAAAT
* * * * * * *
1124699 CATCAATATCATTTATCCTAAT-ATGGAGAATGT-TTCATAGTGCCTAATCAC-AATATGAAAGA
1 CATCAATATCATGTATCCTAATGA-GAAGAATGTGTTTATGGTACCTAATCACTAA-AAGAATGA
* * * * * * *
1124761 AGATTATTATTAGAATCCATGTTTGTCTCATTT-GAGGCATGAACGTAGACTTTACAAAAATTGG
64 AGGTCATTACTAGAATCCATGTTTGTCTCATTTAGAGGCATGAACTTAGACTTCACGAAAATCGG
* *
1124825 TATGGAAAAAGGCTTTCTTGCGAAACCAAAG
129 TAAGGAAAAAGGCTTTCATGC-AAACCAAAG
* * * *
1124856 CATCAATATCGTGTATCCTATTGAGAAGACTGTGTTTATGGTACCTATTC-CATAAAAGAATG--
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTACCTAATCAC-TAAAAGAATGAA
* * * * * *
1124918 GG-AATTACTCTGAGTATTCATGTTTGTCTTATTTAAAAGGCA--AACTTTGA-TTCTATC-AAA
65 GGTCATTA--CT-AGAATCCATGTTTGTCTCATTT-AGAGGCATGAACTTAGACTTC-A-CGAAA
* * * * * *
1124978 AAC-G-ACGAAAAGAACAGCTTTTCTTGTAACACCAAAG
124 ATCGGTAAGGAAA-AA-GGC-TTTCATGCAA-ACCAAAG
* * * * * * ** *
1125015 CATCAATGTCAAGTATCCTAATGATG-GGAATGTGTTTTTGGTTCCCAATCTTTAAAAGAATGGA
1 CATCAATATCATGTATCCTAATGA-GAAGAATGTGTTTATGGTACCTAATCACTAAAAGAATGAA
* * * * * * * * * * * *
1125079 -GACTATTACGAGAATCGATGCTTGTCT-TTTTATAGG-ATAAACTTTGATTTTAAGAAAAATAG
65 GGTC-ATTACTAGAATCCATGTTTGTCTCATTTAGAGGCATGAACTTAGACTTCACG-AAAAT-C
* * ** ** *
1125141 GGCAATG-AAAAGATTTTCATGCAAAAAAAAAT
127 GGTAAGGAAAAAGGCTTTCATGC-AAACCAAAG
* * * * * * * *
1125173 CATCAATATCATTTATCCTAATAAGTAGAATGTGCTTGTAGTACCTAATCACGAAATGAATGAAG
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTACCTAATCACTAAAAGAATGAAG
*
1125238 GTCATTACTAGAATCCATGTTTGTCTCATTT-GAGGCACGAACTTAGACTTCACGAAAATCGGTA
66 GTCATTACTAGAATCCATGTTTGTCTCATTTAGAGGCATGAACTTAGACTTCACGAAAATCGGTA
*
1125302 GGGAAAAAGGCTTTCATGCAAACCTAAAG
131 AGGAAAAAGGCTTTCATGCAAACC-AAAG
* * * *
1125331 CATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTACCTATTC-CATAAAAAAATG--
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTACCTAATCAC-TAAAAGAATGAA
* * * * *
1125393 GG-GATTACTATGAGTATTCATGTTTGTCTTATTTAAAAGGCA--AACTTTGA-TTCTATC-AAA
65 GGTCATTACTA-GA--ATCCATGTTTGTCTCATTT-AGAGGCATGAACTTAGACTTC-A-CGAAA
* ** * * *
1125453 AACGGT--GGAAAAGAACAGTTTTTCTTTCGACACCAAAG
124 ATCGGTAAGG--AA-AA-AGGCTTTCATGC-AAACCAAAG
** * * * * * * * * *
1125491 CATCAATGCCAAGTATCCTAATGA-AGGGAATTTGTTTTTGGTTCCCAATC-TTGAAAATAATGG
1 CATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTATGGTACCTAATCACT-AAAAGAATGA
* * * * * * * * * *
1125554 A-GACTATTACGAGAATCGATGCTTGCCT-TTTTATAGG-ATGAACTTTGATTTCAAGGAAAATA
64 AGGTC-ATTACTAGAATCCATGTTTGTCTCATTTAGAGGCATGAACTTAGACTTC-ACGAAAAT-
* * * ** * ** *
1125616 GGGCAAAG-AAAAGATTTTAATGCTAAAGAAAAT
126 CGGTAAGGAAAAAGGCTTTCATGC-AAACCAAAG
* * * * * * * * * **
1125649 CATCAACATGATTTATCTTAATGAGGAGAATATGCTTATAGTGCCGCATCAC-AAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTACCTAATCACTAAAA-GAATGAA
* * * * * *
1125713 GATCATTCCTAGAATCCATGTTTGTCTCATCTA-AGGCATGAACTTAGACTTTACAAAAATTGGT
65 GGTCATTACTAGAATCCATGTTTGTCTCATTTAGAGGCATGAACTTAGACTTCACGAAAATCGGT
* * * * **
1125777 TAGGAAAAAGCCTTTCTTGCGAATCCTGAG
130 AAGGAAAAAGGCTTTCATGC-AAACCAAAG
* * * * * *
1125807 CATCAATATCGTTTATCCAAATGAGAAGACTATGTTTGTGGTACCTAATC
1 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTACCTAATC
1125857 CATAAAAAAA
Statistics
Matches: 716, Mismatches: 216, Indels: 137
0.67 0.20 0.13
Matches are distributed among these distances:
155 11 0.02
156 13 0.02
157 58 0.08
158 381 0.53
159 137 0.19
160 92 0.13
161 10 0.01
162 7 0.01
163 7 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Consensus pattern (158 bp):
CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTACCTAATCACTAAAAGAATGAAG
GTCATTACTAGAATCCATGTTTGTCTCATTTAGAGGCATGAACTTAGACTTCACGAAAATCGGTA
AGGAAAAAGGCTTTCATGCAAACCAAAG
Found at i:1125708 original size:476 final size:475
Alignment explanation
Indices: 1122546--1126104 Score: 4341
Period size: 476 Copynumber: 7.5 Consensus size: 475
1122536 GGTACCTATT
* *
1122546 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAA
1 TGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
*
1122611 AGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATTAAGGGAATGTGTTTTTGGTT
66 AGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTT
* * * *
1122676 CCCAATCTTGAAAATAATGGAGACTATTATGAGAATCGATGCTTGTCTTTTTATAAGATAAACTT
131 CCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTTTTATAGGATGAACTT
* * *
1122741 TGATTTT-AGGAAAAATAGGGCAGAGAAAAGATTTCCATGTAAAAGAAAATCATCAATATCATTT
196 TGATTTTAAGG-AAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTT
* * * * *
1122805 ATCCTAATGAGGAAAATGTGTTTATAGTG-CGTAATCACAAAATGAATAAAGATCAATACTACAA
260 ATCCTAATGAGGAGAATGTGCTTATAGTGCCG-AATCACAAAATGAATGAAGATCATTACTAGAA
* * * *
1122869 TTCTTGTTTGTCTCATTTGAGGCATGAACTTAGACTTTGCAAAACTTGGT-GGGAAAAAAGCCTT
324 TCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGG-AAAAAGCCTT
* * ** * * *
1122933 TCTTAAG-AAACC-AAAGCACCAATATCGTGTATCCTAAAAAGAAGACTAAGCTTATGGTGCCTA
388 TC--ATGCAAACCTAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTACCTA
* * *
1122996 AT-CGTGAAAAAGAATGGGGAATAGTA
451 ATCCAT--AAAAGAATGGGGATTACTA
* * * *
1123022 AGAGTATTCATGTTTGTCTTATTTAAGATATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
1 TGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
* **
1123087 AGCTTTTCTTACGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGTT
66 AGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTT
* *
1123152 CCCAATCTTGAAAAGAGTGGAG-----TACGAGAATCTATGCTTGTCTTATTTA-AGGGATGAAC
131 CCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTT-TTTATA-GGATGAAC
* * * *
1123211 TTTGATTTTATGGAAAATGGGGCAAAGAAATGA-TTTCTACGCAAAAGAAAA-CTATCAATATCA
194 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATC-ATCAATATCA
* * *
1123274 TTTATTCTAATGAGGAGAATGTGTTTATAGTG-CGTAATCACAAAATGAATGAAGATCAATACTA
257 TTTATCCTAATGAGGAGAATGTGCTTATAGTGCCG-AATCACAAAATGAATGAAGATCATTACTA
* * **
1123338 GAATTCTTGTTTAG-CTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGT-GGGAAAAAAG
321 GAATCCATGTTT-GTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGG-AAAAAG
* * ** * * *
1123401 TCTTTCTTAAG-AAACC-AAAGCGCCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTG
384 CCTTTC--ATGCAAACCTAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTA
* *
1123464 CCTAAT-CATGAAAAGAATGGGGAATAGTA
447 CCTAATCCAT-AAAAGAATGGGGATTACTA
* *
1123493 TGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTTTATCAAAAACGATGGAAAGAAA
1 TGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
** * * *
1123558 AGCTTTTCTAACGACACCAAAGCATTAATGCCAAGTATCCTAGTGAAGGGAATGTGTTTTTGGTT
66 AGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTT
*
1123623 CCTAATCTTGAAAAGAACAGAGACTGTTATGAGAATGGAGACTATTACGAGAATCGATGCTTGTC
131 CCCAATCTT----------GA-A-----A--AGAATGGAGACTATTACGAGAATCGATGCTTGTC
* *
1123688 TTTTTATAGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCATGCTAAAGAA
178 TTTTTATAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
* * * *
1123753 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATACTGCCTAATCACGAAATGAATA
243 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCGAATCACAAAATGAATG
* * * * ** *
1123818 AAGATCATTACTAGAATACAAGTTTGTCTCATTTGAGGCACGAACTTAGGCTTTGTAAAAATCGG
308 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGG
*
1123883 TAGGGAAAAAAG-CTTTCATGCCAAA-CTAAAGCATCAATATCATGTATCCTAATGAGAAGACTA
373 TAGGG-AAAAAGCCTTTCATG-CAAACCTAAAGCATCAATATCGTGTATCCTAATGAGAAGACTA
** *
1123946 TGTCAATGGTACCTATTCCATAAAAGAATGGGGATTACTA
436 TGTTTATGGTACCTAATCCATAAAAGAATGGGGATTACTA
* * *
1123986 TGAGTATTCATATTTGTCTTATTTAAAAGGCAAACTTTGATTCTATCAAAAACGATGGAAAAGAA
1 TGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAA
* ** * *
1124051 CATTTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATTTGTTTTTTGT
65 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * * *
1124116 TCCCAATCTTGAAAAAAATGGAGACTGTTACGAGTATCGATGCTTGCCTTTTTATAGGATGAAGT
130 TCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTTTTATAGGATGAACT
* * *
1124181 TTGATTTTAAGGAAAATAAGGCAAACAAAATATTTTCATGCAAAAGAAAATCATCAATATCATTT
195 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTT
*
1124246 ATCCTAATGAGGAGAATGAG-TTATAGTGCC--A-CACGAACTTAGACTTGAATGAAGATCATTA
260 ATCCTAATGAGGAGAATGTGCTTATAGTGCCGAATCAC-AA---A-A--TGAATGAAGATCATTA
* * * * * * *
1124307 GTAGAATCCATATTTTTCTCGTTTGATGCATGAACTTAGACTTTAAAAAAATTGGTTGGGAAAAA
318 CTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGGAAAAA
* * * * * * *
1124372 GCCTTTCTTGC-AA-GTAAAAGCGTCAATATCGTTTATCCAAATAAGAAGACTATGTTTGTGGTA
383 GCCTTTCATGCAAACCT-AAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTA
1124435 CCTAATCCATAAAAGAATGGGGATTACTA
447 CCTAATCCATAAAAGAATGGGGATTACTA
* * * * *
1124464 TGAGTATTCATCTTTGTCTTATTTAAAAGGA-AAACTTTGGTTCTATCTAAAACAGTGGAAATAA
1 TGAGTATTCATGTTTGTCTTATTTAAAA-GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * *
1124528 CAGCTCTTCTTGTGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATATGTTTTTGGT
65 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * * *
1124593 TCCTAATCCTAAAAAGAATGGAGACTATTA-GACGAATTGATGCTTG-C-----CT---ATGAAC
130 TCCCAATCTTGAAAAGAATGGAGACTATTACGA-GAATCGATGCTTGTCTTTTTATAGGATGAAC
* * * *
1124648 TTTGATTTTATGTAAAATAGGGCAAAGAAAAGATTTGCACGCAAAA-AAAATCATCAATATCATT
194 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATT
* * * * *
1124712 TATCCTAAT-ATGGAGAATGT--TTCATAGTGCCTAATCACAATATGAAAGAAGATTATTATTAG
259 TATCCTAATGA-GGAGAATGTGCTT-ATAGTGCCGAATCACAAAATGAATGAAGATCATTACTAG
* * *
1124774 AATCCATGTTTGTCTCATTTGAGGCATGAACGTAGACTTTACAAAAATTGGTATGGAAAAAGGCT
322 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCT
* * *
1124839 TTCTTGCGAAACC-AAAGCATCAATATCGTGTATCCTATTGAGAAGACTGTGTTTATGGTACCTA
387 TTCATGC-AAACCTAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTACCTA
* * *
1124903 TTCCATAAAAGAATGGGAATTACTC
451 ATCCATAAAAGAATGGGGATTACTA
* ** * *
1124928 TGAGTATTCATGTTTGTCTTATTTAAAAGGCAAACTTTGATTCTATCAAAAACGACGAAAAGAAC
1 TGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
** *
1124993 AGCTTTTCTTGTAACACCAAAGCATCAATGTCAAGTATCCTAATGATGGGAATGTGTTTTTGGTT
66 AGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTT
* *
1125058 CCCAATCTTTAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTTTTATAGGATAAACTT
131 CCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTTTTATAGGATGAACTT
* * *
1125123 TGATTTTAAGAAAAATAGGGCAATGAAAAGATTTTCATGCAAAAAAAAATCATCAATATCATTTA
196 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
* * * * * * *
1125188 TCCTAATAAGTAGAATGTGCTTGTAGTACCTAATCACGAAATGAATGAAGGTCATTACTAGAATC
261 TCCTAATGAGGAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * * *
1125253 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTCACGAAAATCGGTAGGGAAAAAGGCTTTCA
326 CATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCA
* *
1125318 TGCAAACCTAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTACCTATTCCA
391 TGCAAACCTAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTACCTAATCCA
*
1125383 TAAAAAAATGGGGATTACTA
456 TAAAAGAATGGGGATTACTA
*
1125403 TGAGTATTCATGTTTGTCTTATTTAAAAGGCAAACTTTGATTCTATCAAAAACGGTGGAAAAGAA
1 TGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAA
* * * * *
1125468 CAGTTTTTCTTTCGACACCAAAGCATCAATGCCAAGTATCCTAATGAAGGGAATTTGTTTTTGGT
65 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGT
* *
1125533 TCCCAATCTTGAAAATAATGGAGACTATTACGAGAATCGATGCTTGCCTTTTTATAGGATGAACT
130 TCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTTTTATAGGATGAACT
* * * * *
1125598 TTGATTTCAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCTAAAGAAAATCATCAACATGATTT
195 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTT
* * * *
1125663 ATCTTAATGAGGAGAATATGCTTATAGTGCCGCATCACAAAATGAATGAAGATCATTCCTAGAAT
260 ATCCTAATGAGGAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATCATTACTAGAAT
* *
1125728 CCATGTTTGTCTCATCTAAGGCATGAACTTAGACTTTACAAAAATTGGTTA-GGAAAAAGCCTTT
325 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGG-TAGGGAAAAAGCCTTT
* * * * * *
1125792 CTTGCGAATCCT-GAGCATCAATATCGTTTATCCAAATGAGAAGACTATGTTTGTGGTACCTAAT
389 CATGC-AAACCTAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTACCTAAT
*
1125856 CCATAAAAAAATGGGGATTACTA
453 CCATAAAAGAATGGGGATTACTA
* * * * *
1125879 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACATTGACTCTATCAAAAAAGGTGAAAAGAAA
1 TGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
* * * *
1125944 AGCTTTTCTTGCGAGACCAAAGCATCAATGTCACA-TATCCTAAGGAAGGGAATATGTTTTAGGT
66 AGCTTTTCTTGCGACACCAAAGCATCAATGTCA-AGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * * *
1126008 TCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGTTGCTTGTCTTATTTAAAGGATAAAC
130 TCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTT-TTTATAGGATGAAC
* *
1126073 TTTGATTTTAAGTAAAATAGGGCATAGAAAAG
194 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
1126105 GCAAACTTTG
Statistics
Matches: 2696, Mismatches: 307, Indels: 160
0.85 0.10 0.05
Matches are distributed among these distances:
463 81 0.03
464 219 0.08
465 6 0.00
466 3 0.00
467 43 0.02
468 44 0.02
469 3 0.00
470 4 0.00
471 171 0.06
472 244 0.09
473 51 0.02
474 40 0.01
475 337 0.12
476 730 0.27
477 111 0.04
478 125 0.05
479 70 0.03
481 2 0.00
482 1 0.00
483 1 0.00
484 2 0.00
487 1 0.00
489 8 0.00
491 2 0.00
492 2 0.00
493 284 0.11
494 111 0.04
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
TGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
AGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTT
CCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTTTTATAGGATGAACTT
TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
TCCTAATGAGGAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATCATTACTAGAATC
CATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCA
TGCAAACCTAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTACCTAATCCA
TAAAAGAATGGGGATTACTA
Found at i:1126281 original size:197 final size:197
Alignment explanation
Indices: 1125909--1126293 Score: 542
Period size: 197 Copynumber: 2.0 Consensus size: 197
1125899 ATTTAAGAGA
* *
1125909 CAAACATTGACTCTATCAAAAAAGGTGAAAAGAAAAGCTTTTCTTGCGAGACCAAAGCATCAATG
1 CAAACATTGACTCTATCAAAAAAGGTGAAAAGAAAAGCTTTTATTGCGACACCAAAGCATCAATG
** * *
1125974 TCACATATCCTAAGGAAGGGAATATGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
66 TCACATATCCTAAGGAAGGGAATATGTTTTAGGTTCAAAATCCTGAAAAGAATGGAGACTATTAC
*
1126039 AAGAATCGTTGCTTGTCTTATTTAAAGGATAAACTTTGATTTTAAGTAAAATAGGGCATAGAAAA
131 AAGAATCGATGCTTGTCTTATTTAAAGGATAAACTTTGATTTTAAGTAAAATAGGGCATAGAAAA
1126104 GG
196 GG
* * * *
1126106 CAAACTTTGATTCTAT-AAAAAATGGTGGAAAGAAAAGCTTTTATTGCGACACTAAAGCATCAAT
1 CAAACATTGACTCTATCAAAAAA-GGTGAAAAGAAAAGCTTTTATTGCGACACCAAAGCATCAAT
** * * *
1126170 GTCTTATATGCT-AGTGAAGGGATTGTGTTTTAGGTTCAAAATCCTGAAAAGAATGGAGACTATT
65 GTCACATATCCTAAG-GAAGGGAATATGTTTTAGGTTCAAAATCCTGAAAAGAATGGAGACTATT
* * * *
1126234 GCAAGAATCGATGCTTGTCTTATTTTAGGGATGAACTTT-ATTTTTAAGTAAAATAGGGCA
129 ACAAGAATCGATGCTTGTCTTATTTAAAGGATAAACTTTGA-TTTTAAGTAAAATAGGGCA
1126294 AAAAAAAGAT
Statistics
Matches: 165, Mismatches: 20, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
196 9 0.05
197 156 0.95
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.30
Consensus pattern (197 bp):
CAAACATTGACTCTATCAAAAAAGGTGAAAAGAAAAGCTTTTATTGCGACACCAAAGCATCAATG
TCACATATCCTAAGGAAGGGAATATGTTTTAGGTTCAAAATCCTGAAAAGAATGGAGACTATTAC
AAGAATCGATGCTTGTCTTATTTAAAGGATAAACTTTGATTTTAAGTAAAATAGGGCATAGAAAA
GG
Found at i:1126715 original size:669 final size:672
Alignment explanation
Indices: 1125427--1126765 Score: 1716
Period size: 669 Copynumber: 2.0 Consensus size: 672
1125417 TGTCTTATTT
* * * * *
1125427 AAAAGGCAAACTTTGATTCTATCAAAAACGGTGGAAAAGAACAGTTTTTCTTTCGACACCAAAGC
1 AAAAGGCAAACTTTGATTCTATAAAAAACGGTGGAAAAGAAAAGCTTTTATTGCGACACCAAAGC
* ** * *
1125492 ATCAATGCCAAGTATCCTAATGAAGGGAATTTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGA
66 ATCAATGCCAAGTATCCTAATGAAGGGAATTTGTTTTAGGTTCAAAATCCTGAAAAGAATGGAGA
*
1125557 CTATTACGAGAATCGATGCTTGCCTTTTTATAGGATGAACTTTGATTTCAAGGAAAATAGGGCAA
131 CTATTACAAGAATCGATGCTTGCCTTTTTATAGGATGAACTTTGATTTCAAGGAAAATAGGGCAA
* * * * * * *
1125622 AGAAAAGATTTTAATGCTAAAGAAAATCATCAACATGATTTATCTTAATGAGGAGAATATGCTTA
196 AAAAAAGATTTCAACGCAAAAGAAAATCATCAACATCATTTATCCTAATGAGGAGAATAGGCTTA
* * *
1125687 TAGTGCCGCATCACAAAATGAATGAAGATCATTCCTAGAATCCATGTTTGTCTCATCTAAGGCAT
261 TAGTGCCGAATCACAAAATGAA-GAAGATCATTACTAGAATCCATGTTTGTCTCATCTAAGGCAC
* * * *** *
1125752 GAACTTAGACTTTACAAAAATTGGTTAGGAAAAAGCCTTTCTTGCGAATCCTGAGCATCAATATC
325 GAACTTAGACTTTACAAAAATTGGTTAGGAAAAAACCTTTCTTGCAAAACAAAAGCACCAATATC
* * * *
1125817 GTTTATCCAAATGAGAAGACTATGTTTGTGGTACCTAATCCATAAAAAAATGGGGATTACTATGA
390 GTGTATCCAAATGAGAAGACTATGTTTATGGTACCTAATCCATAAAAAAATGGGAAATACTATGA
1125882 GTATTCATGTTTGTCTTATTTAAGAGACAAACATTGACTCTATCAAAAAAGGTGAAAAGAAAAGC
455 GTATTCATGTTTGTCTTATTTAAGAGACAAACATTGACTCTATCAAAAAAGGTGAAAAGAAAAGC
*
1125947 TTTTCTTGCGAGACCAAAGCATCAATGTCACATATCCTAAGGAAGGGAATATGTTTTAGGTTCCC
520 TTTTCTTGCGACACCAAAGCATCAATGTCACATATCCTAAGGAAGGGAATATGTTTTAGGTTCCC
** * * * *
1126012 AATCTTGAAAAGAATGGAGACTGTTACAAGAATCGTTGCTTGTCTTATTTAAAGGATA-AACTTT
585 AATCCCGAAAAGAATGAAGACTATTACAAGAATCGATGCTTGTCTTACTTAAAGGA-AGAACTTT
* *
1126076 GATTTTAAGTAAAATAGGGCATAG
649 AATTTTAAGGAAAATAGGGCATAG
* *
1126100 AAAAGGCAAACTTTGATTCTATAAAAAATGGTGG-AAAGAAAAGCTTTTATTGCGACACTAAAGC
1 AAAAGGCAAACTTTGATTCTATAAAAAACGGTGGAAAAGAAAAGCTTTTATTGCGACACCAAAGC
** * *
1126164 ATCAATGTCTTA-TATGCTAGTGAAGGG-ATTGTGTTTTAGGTTCAAAATCCTGAAAAGAATGGA
66 ATCAATG-CCAAGTATCCTAATGAAGGGAATT-TGTTTTAGGTTCAAAATCCTGAAAAGAATGGA
* * * *
1126227 GACTATTGCAAGAATCGATGCTTGTCTTATTT-TAGGGATGAACTTT-ATTTTTAAGTAAAATAG
129 GACTATTACAAGAATCGATGCTTGCCTT-TTTATA-GGATGAACTTTGA-TTTCAAGGAAAATAG
* * *
1126290 GGCAAAAAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGG
191 GGCAAAAAAAAGATTTCAACGCAAAAGAAAATCATCAACATCATTTATCCTAATGAGGAGAATAG
* * * * * *
1126355 GTTTATTGTGCCTAATCATAAAATG-A-AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
256 GCTTATAGTGCCGAATCACAAAATGAAGAAGATCATTACTAGAATCCATGTTTGTCTCATCTAAG
* * ** *
1126418 GCACGAACTTAGACTTTGCAAAAATTGG-TGGGAAAAAATGTTTCTTGCAAAACAAAAGTACCAA
321 GCACGAACTTAGACTTTACAAAAATTGGTTAGGAAAAAACCTTTCTTGCAAAACAAAAGCACCAA
* ** *
1126482 TATCGTGTATCCTAAA-GAGAAGACTTTGTTTATGG-AGCCTAAT-TGTGAAAAGAATGGGAAAT
386 TATCGTGTATCC-AAATGAGAAGACTATGTTTATGGTA-CCTAATCCAT-AAAAAAATGGGAAAT
* * * * * * * * *
1126544 AGTATGAGTGTTCTTTTTTGTCTTATTTAGGAGACAAACTTTGATTCTATTAAAAACGGTCG-AA
448 ACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACATTGACTCTATCAAAAAAGGT-GAAA
* *
1126608 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA-AGTATCCTAATGAAGGGAATGTGTTT
512 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCACA-TATCCTAAGGAAGGGAATATGTTT
* ** *
1126672 TTGGTTCCCAATCCCGAAAAGAATGAAGACTATTATGAGAATCGATGCTTGTCTTACTTAAGGGA
576 TAGGTTCCCAATCCCGAAAAGAATGAAGACTATTACAAGAATCGATGCTTGTCTTACTTAAAGGA
1126737 AGAACTTTAATTTTAAGGAAAATAGGGCA
641 AGAACTTTAATTTTAAGGAAAATAGGGCA
1126766 ATGAAAATAT
Statistics
Matches: 571, Mismatches: 84, Indels: 26
0.84 0.12 0.04
Matches are distributed among these distances:
668 4 0.01
669 263 0.46
670 64 0.11
671 3 0.01
672 101 0.18
673 136 0.24
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (672 bp):
AAAAGGCAAACTTTGATTCTATAAAAAACGGTGGAAAAGAAAAGCTTTTATTGCGACACCAAAGC
ATCAATGCCAAGTATCCTAATGAAGGGAATTTGTTTTAGGTTCAAAATCCTGAAAAGAATGGAGA
CTATTACAAGAATCGATGCTTGCCTTTTTATAGGATGAACTTTGATTTCAAGGAAAATAGGGCAA
AAAAAAGATTTCAACGCAAAAGAAAATCATCAACATCATTTATCCTAATGAGGAGAATAGGCTTA
TAGTGCCGAATCACAAAATGAAGAAGATCATTACTAGAATCCATGTTTGTCTCATCTAAGGCACG
AACTTAGACTTTACAAAAATTGGTTAGGAAAAAACCTTTCTTGCAAAACAAAAGCACCAATATCG
TGTATCCAAATGAGAAGACTATGTTTATGGTACCTAATCCATAAAAAAATGGGAAATACTATGAG
TATTCATGTTTGTCTTATTTAAGAGACAAACATTGACTCTATCAAAAAAGGTGAAAAGAAAAGCT
TTTCTTGCGACACCAAAGCATCAATGTCACATATCCTAAGGAAGGGAATATGTTTTAGGTTCCCA
ATCCCGAAAAGAATGAAGACTATTACAAGAATCGATGCTTGTCTTACTTAAAGGAAGAACTTTAA
TTTTAAGGAAAATAGGGCATAG
Found at i:1127207 original size:159 final size:157
Alignment explanation
Indices: 1126108--1129123 Score: 706
Period size: 159 Copynumber: 19.1 Consensus size: 157
1126098 AGAAAAGGCA
** * * * *
1126108 AACTTTGATTCTATA-AAAAATGGTGGAAAGAAAAGCTTTTATTGCGACACTAAAGCATCAATGT
1 AACTTTGATTCTA-ACAAAAATGGTGGAAAGAAAAGCTTTCCTAGCAACACCAAAGCATCAATAT
* * * * * * ** * *
1126172 CTTATATGCTAGTGAAGGGATTGTGTTTTA-GGTTCAAAATCCTGAAAAGAATGGAGACTATTGC
65 CATGTATCCTAATG-AGGGAATGTG-TTTAGGGTGCCCAATCCTAAAAAGAATGGAGACTATTAC
* * *
1126236 AAGAATCGATGCTTGTCTTATTTTAGGGATG
128 GAGAATCGATGTTTGTCTTA-TTTAAGGATG
* ** * * * * ** *
1126267 AACTTT-ATTTTTAAGTAAAATAGG-GCAAAAAAAAGATTTCC-ACGCAAAAGAAAATCATCAAT
1 AACTTTGA-TTCTAACAAAAAT-GGTGGAAAGAAAAGCTTTCCTA-GCAACACCAAAGCATCAAT
* * ** * * *
1126329 ATCATTTATCCTAATGAGGAGAATGGGTTTATTGTGCCTAATCATAAAATGAA---AGA-TCATT
63 ATCATGTATCCTAATGAGG-GAATGTGTTTAGGGTGCCCAATCCTAAAAAGAATGGAGACT-ATT
* * * * *
1126390 ACTAGAATCCATGTTTGTCTCATTTGAGGCACG
126 ACGAGAATCGATGTTTGTCTTATTTAAGG-ATG
* * * * * * * *
1126423 AACTTAGACTT-T-GCAAAAATTGGTGGGAAA-AAATG-TTT-CTTGCAAAACAAAAGTACCAAT
1 AACTTTGA-TTCTAACAAAAA-TGGT-GGAAAGAAAAGCTTTCCTAGCAACACCAAAGCATCAAT
* * * * * * * * ** * * *
1126483 ATCGTGTATCCTAAAGAGAAGACTTTGTTTATGGAGCCTAATTGTGAAAAGAATGG-GAAATAGT
63 ATCATGTATCCTAATGAG-GGAATGTGTTTAGGGTGCCCAATCCTAAAAAGAATGGAG-ACTATT
* ** * * * **
1126547 ATGAGTGTTC-TTTTTTGTCTTATTTAGGAGACA
126 ACGAG-AATCGATGTTTGTCTTATTTAAG-GATG
** * * * * * *
1126580 AACTTTGATTCTATTAAAAACGGTCGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
1 AACTTTGATTCTAACAAAAATGGTGGAAAGAAAAGCTTTCCTAGCAACACCAAAGCATCAATATC
* ** * ** * *
1126645 AAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCCGAAAAGAATGAAGACTATTATGA
66 ATGTATCCTAATG-AGGGAATGTGTTTAGGGTGCCCAATCCTAAAAAGAATGGAGACTATTACGA
* * *
1126710 GAATCGATGCTTGTCTTACTTAAGGGAAG
130 GAATCGATGTTTGTCTTATTTAA-GGATG
* * ** * * ** * * ** **
1126739 AACTTTAATTTTAAGGAAAATAGG-GCAATGAAAATATTTTC-ACGCAAAAGAAAATTATCAATA
1 AACTTTGATTCTAACAAAAAT-GGTGGAAAGAAAAGCTTTCCTA-GCAACACCAAAGCATCAATA
* ** ** * *
1126802 TCATTTATCCTAATGAGAGGAATGTGTTTACAGTGCTTAAT--TACAAAATGAATGAAGA-TCAA
64 TCATGTATCCTAATGAG-GGAATGTGTTTAGGGTGCCCAATCCTA-AAAA-GAATGGAGACT-AT
* ** ** * * *
1126864 TACTAGAATCCTTGTTTAACTCATTTGAGGCACG
125 TACGAGAATCGATGTTTGTCTTATTTAAGG-ATG
* *
1126898 AA-TTTAGACTT-T-ACAAAAATTGGTGGGAAA-AAAAGCCTTTCTTAAG-AA-ACCAAAGCACC
1 AACTTT-GA-TTCTAACAAAAA-TGGT-GGAAAGAAAAG-CTTTCCT-AGCAACACCAAAGCATC
* * * ** * * * * * * * *
1126957 AATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGACTAATCGTGAAAAGAGTGGGGGA-T
60 AATATCATGTATCCTAATGAG-GGAATGTGTTTAGGGTGCCCAATCCTAAAAAGAAT-GGAGACT
* * *
1127021 AGTT-TGAGTATTGATGTTTGTCTTATTTAAGAGATG
123 A-TTACGAGAATCGATGTTTGTCTTATTTAAG-GATG
*
1127057 AACTTTGATTCTAACAAAAATGGTGGAAAGAAAAGCTTTCCTAGCAACACCAAAGCATCAATGTC
1 AACTTTGATTCTAACAAAAATGGTGGAAAGAAAAGCTTTCCTAGCAACACCAAAGCATCAATATC
* *
1127122 ATGTATCCTAATGAAGGGAATGCGCTTTA-GGTTCCCAATCCTAAAAAGAATGGAGACTATTACG
66 ATGTATCCTAATG-AGGGAATGTG-TTTAGGGTGCCCAATCCTAAAAAGAATGGAGACTATTACG
* * *
1127186 AGAATAGATGCTTGTCTTATTTAAGGGACG
129 AGAATCGATGTTTGTCTTATTTAA-GGATG
* * ** * * * ** * *
1127216 AACTTTCATTTTAAGGAAAATCGG-GCAAAGAAAAGATTTCC-ATGCAAAAGAAAATCGTCAATA
1 AACTTTGATTCTAACAAAAAT-GGTGGAAAGAAAAGCTTTCCTA-GCAACACCAAAGCATCAATA
* *** ** * * * * *
1127279 TCATTTATCCTAATGAGGAGAATGTGTTTATAATGCGTAATCATAAAATGAATGAAGATTAATAC
64 TCATGTATCCTAATGAGG-GAATGTGTTTAGGGTGCCCAATCCTAAAAAGAATGGAGACTATTAC
* * * * *
1127344 TAGAATCCATGTTTATCTCATTTGAGGCATG
128 GAGAATCGATGTTTGTCTTATTTAAGG-ATG
* * * ** *
1127375 AACTTAGACTT-T-AC-AAAAT-TTGGAAGGAAAAAGGCCTTTTTTAAG-AA-ACCAAAGCACCA
1 AACTTTGA-TTCTAACAAAAATGGTGGAAAG-AAAA-G-CTTTCCT-AGCAACACCAAAGCATCA
* * * * * * ** * *
1127434 AAATCGTGTATCCTAATGAGAAGACTATGTTTAGGGTGCCTAATTGTGAAAAGAATGGGGAAGAG
61 ATATCATGTATCCTAATGAG-GGAATGTGTTTAGGGTGCCCAATCCTAAAAAGAAT--GG-AGAC
*** **
1127499 TATT--G-TTTTC-ATGTTTGTCTTATTTAAGAGACA
122 TATTACGAGAATCGATGTTTGTCTTATTTAAG-GATG
* * * * * * *
1127532 AACTTTGATTCTATCAAAAACGGTGGAAATAAAAGC-TTCTGTTGCGACACCAAAGCATCAATGT
1 AACTTTGATTCTAACAAAAATGGTGGAAAGAAAAGCTTTC-CTAGCAACACCAAAGCATCAATAT
* * ** * *
1127596 CAAGTATCCTAATGAAGGAAATGTGTTTTTGGTTCCCAATCCTAAAAAGAATGGAGACTATTATG
65 CATGTATCCTAATG-AGGGAATGTGTTTAGGGTGCCCAATCCTAAAAAGAATGGAGACTATTACG
*
1127661 AGAATCGATGCTTGTCTTATTTAAGGTATG
129 AGAATCGATGTTTGTCTTATTTAAGG-ATG
* * *** * * * *
1127691 AATTTTGATTTTATGGAAAATAGG-GTAAAGAAAAG-TTTCC-ACGCAA-ACGAAAATCATCAAA
1 AACTTTGATTCTAACAAAAAT-GGTGGAAAGAAAAGCTTTCCTA-GCAACAC-CAAAGCATCAAT
* * ** **** * * *
1127752 ATCATTTATCCTAACGAGGAGAATGTGTTTATAGTATGTAATCAC-AAAATGAATGAAGA-TCAA
63 ATCATGTATCCTAATGAGG-GAATGTGTTTAGGGTGCCCAATC-CTAAAAAGAATGGAGACT-AT
* * ** ** * * **
1127815 CACTAGAATCCTTGTTTGGATCATTTGAGGCACA
125 TACGAGAATCGATGTTTGTCTTATTTAAGG-ATG
* * * *
1127849 AACTTAGACTT-T-ACAAAAATTGGTGGGAAA-AAAAGCCTTTCTTAGTAA-ACCAAAGCATAAA
1 AACTTTGA-TTCTAACAAAAA-TGGT-GGAAAGAAAAG-CTTTCCTAGCAACACCAAAGCATCAA
* * * * * ** * * * * * *
1127910 TCTCATATGTCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAA-AATGGGGAATAG
62 TATCATGTATCCTAATGAG-GGAATGTGTTTAGGGTGCCCAATCCT-AAAAAGAATGGAGACTAT
* *
1127974 TATGAGTATTC-ATGTTTGTCTTATTTAAGAGATG
125 TACGAG-AATCGATGTTTGTCTTATTTAAG-GATG
* * * * * ** * *
1128008 AACTTTGATTCCATCAAAAACT-ATGAAAAGAAAAGCTTTTCTAGTGACACCAAAGCAACAATGT
1 AACTTTGATTCTAACAAAAA-TGGTGGAAAGAAAAGCTTTCCTAGCAACACCAAAGCATCAATAT
** * * * * * * *
1128072 CGA-GTATCCTAATGACGGGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATAGAAACTGTTAC
65 C-ATGTATCCTAATGA-GGGAATGTGTTTAGGGTGCCCAATCCTAAAAAGAATGGAGACTATTAC
* * * * *
1128136 GAGAATTGATGTGTGGCTTATTGAAGGGATT
128 GAGAATCGATGTTTGTCTTATTTAA-GGATG
* * * * * * ** *
1128167 AACTTTGATTTTAAGAAAAATAAG-GCAAAGAAAAGATTTCC-ACGCAAAAGAAAATCATCAATA
1 AACTTTGATTCTAACAAAAAT-GGTGGAAAGAAAAGCTTTCCTA-GCAACACCAAAGCATCAATA
* * * * ** * * * *
1128230 TCATTTATCCTAAAGAGGAAAATGTGCTTATTGT-CCCGAATCAC-AAAATGAATGAAGATTATA
64 TCATGTATCCTAATGAGG-GAATGTGTTTAGGGTGCCC-AATC-CTAAAAAGAATGGAGACTATT
* ** * * * * *
1128293 ACTAGAATCCTTGTTTGGCTCATTTGAGACACG
126 ACGAGAATCGATGTTTGTCTTATTTAAG-GATG
* * * *
1128326 AACTTAGACTT-T-ACAAAAATTGGTTGG-AA-AAAAGCCTTTCTTAAG-AA-ACCAAAGAACCA
1 AACTTTGA-TTCTAACAAAAA-TGG-TGGAAAGAAAAG-CTTTCCT-AGCAACACCAAAGCATCA
* * * * ** * * * * *
1128385 ATATCGTGCATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAA-AAGGGGGAAC-
61 ATATCATGTATCCTAATGAG-GGAATGTGTTTAGGGTGCCCAATCCT-AAAAAGAATGGAG-ACT
* * * * *
1128448 AGTATGAGTATTC-ATATTTGCCTTATTTAAGAGATG
123 ATTACGAG-AATCGATGTTTGTCTTATTTAAG-GATG
* * ** * * ** *
1128484 AATTTTGATTCTATCAAAAGCGATGGAAAGAAAAGCTTTTCTAGTGACACCAAAGCATCAATGTC
1 AACTTTGATTCTAACAAAAATGGTGGAAAGAAAAGCTTTCCTAGCAACACCAAAGCATCAATATC
* ** * * * * *
1128549 AAGTATCCTAATGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGAAACTATTACGA
66 ATGTATCCTAATGA-GGGAATGTGTTTAGGGTGCCCAATCCTAAAAAGAATGGAGACTATTACGA
* * * *
1128614 GAGTTGATGTGTGTCTTATTGAAGGGATG
130 GAATCGATGTTTGTCTTATTTAA-GGATG
** * * *
1128643 AACTTTGATTCTAAGGAAAATAAG-GCAAAGAAAAGATTTCC-ATGCAA-A--AAA--AT--AT-
1 AACTTTGATTCTAACAAAAAT-GGTGGAAAGAAAAGCTTTCCTA-GCAACACCAAAGCATCAATA
* * * * * ** * * * * * *
1128698 T-GTTTATCCTAAAGCGGAGAATGTGCTTATAGT-CTCGAATCAC-CAAATGAATGAAGATTATA
64 TCATGTATCCTAATGAGG-GAATGTGTTTAGGGTGC-CCAATC-CTAAAAAGAATGGAGACTATT
* ** * * * *
1128760 ACTAGAATCCTTGTTTGGCTCATTTGAGACATG
126 ACGAGAATCGATGTTTGTCTTATTTAAG-GATG
* * * * *
1128793 AACTTAGACTT-T-ACAAAAATTGGTGGGAA-AAAAGCCTTTCTTAAG-AA-ACCAAAGAACCAA
1 AACTTTGA-TTCTAACAAAAA-TGGTGGAAAGAAAAG-CTTTCCT-AGCAACACCAAAGCATCAA
* * * * ** * * * * *
1128853 TATCGTGCATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAA-AAGGGGGAAC-A
62 TATCATGTATCCTAATGAG-GGAATGTGTTTAGGGTGCCCAATCCT-AAAAAGAATGGAG-ACTA
* * * * *
1128916 GTATGAGTATTC-ATATTTGCCTTATTTAAGAGATG
124 TTACGAG-AATCGATGTTTGTCTTATTTAAG-GATG
* * ** * * ** *
1128951 AATTTTGATTCTATCAAAAGCGATGGAAAGAAAAGCTTTTCTAGTGACACCAAAGCATCAATGTC
1 AACTTTGATTCTAACAAAAATGGTGGAAAGAAAAGCTTTCCTAGCAACACCAAAGCATCAATATC
* ** * * * * *
1129016 AAGTATCCTAATGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGAAACTATTACGA
66 ATGTATCCTAATGA-GGGAATGTGTTTAGGGTGCCCAATCCTAAAAAGAATGGAGACTATTACGA
* * * *
1129081 GAGTTGATGTGTGTCTTATTGAAGGGATG
130 GAATCGATGTTTGTCTTATTTAA-GGATG
1129110 AACTTTGATTCTAA
1 AACTTTGATTCTAA
1129124 GGAAAATAAG
Statistics
Matches: 1999, Mismatches: 670, Indels: 376
0.66 0.22 0.12
Matches are distributed among these distances:
149 15 0.01
150 77 0.04
151 4 0.00
152 6 0.00
154 58 0.03
155 22 0.01
156 59 0.03
157 106 0.05
158 473 0.24
159 1074 0.54
160 93 0.05
161 11 0.01
162 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.30
Consensus pattern (157 bp):
AACTTTGATTCTAACAAAAATGGTGGAAAGAAAAGCTTTCCTAGCAACACCAAAGCATCAATATC
ATGTATCCTAATGAGGGAATGTGTTTAGGGTGCCCAATCCTAAAAAGAATGGAGACTATTACGAG
AATCGATGTTTGTCTTATTTAAGGATG
Found at i:1128176 original size:476 final size:475
Alignment explanation
Indices: 1126108--1129483 Score: 4296
Period size: 467 Copynumber: 7.1 Consensus size: 475
1126098 AGAAAAGGCA
* * * * *
1126108 AACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTATTGCGACACTAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTC
* * * * * ** * * * *
1126173 TTA-TATGCTAGTGAAGGGATTGTGTTTTAGGTTCAAAATCCTGAAAAGAATGGAGACTATTGCA
66 -AAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATAGAAACTATTACG
** * *
1126237 AGAATCGATGCTTGTCTTATTTTAGGGATGAACTTT-ATTTTTAAGTAAAATAGGGCAAAAAAAA
130 AGAATCGATGCTTGTCTTATTGAAGGGATGAACTTTGA-TTTTAAGGAAAATAGGGCAAAGAAAA
* * *
1126301 GATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGGGTTTATTGTGC
194 GATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGT-C
* * * ** * *
1126366 -CTAATCATAAAATGAAAGATCATT--ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
258 TGTAATCACAAAATGAATGAAGATTAAACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAACTT
* * * *
1126428 AGACTTTGCAAAAATTGGTGGGAAAAAATG--TTTCTTGCA-AAACAAAAGTACCAATATCGTGT
323 AGACTTTACAAAAATTGGTGGGAAAAAA-GCCTTTCTT-AAGAAACCAAAGAACCAATATCGTGT
* ** * * * * *
1126490 ATCCTAAAGAGAAGACTTTGTTTATGGAGCCTAATTGTGAAAAGAATGGGAAATAGTATGAGTGT
386 ATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAAAATGGGGAATAGTATGAGTAT
* * * **
1126555 TCTTTTTTGTCTTATTTAGGAGACA
451 TCATGTTTGTCTTATTTAAGAGATG
* * *
1126580 AACTTTGATTCTATTAAAAACGGTCGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTC
* *
1126645 AAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCCGAAAAGAAT-GAAGACTATTATG
66 AAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATAGAA-ACTATTACG
* * *
1126709 AGAATCGATGCTTGTCTTACTT-AAGGGAAGAACTTTAATTTTAAGGAAAATAGGGCAATGAAAA
130 AGAATCGATGCTTGTCTTA-TTGAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * *
1126773 TATTTTCACGCAAAAGAAAATTATCAATATCATTTATCCTAATGA-GAGGAATGTGTTTACAGTG
194 GATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGA-GAATGTGTTTATAGT-
* * ** *
1126837 CT-TAATTACAAAATGAATGAAGATCAATACTAGAATCCTTGTTTAACTCATTTGAGGCACGAAT
257 CTGTAATCACAAAATGAATGAAGATTAA-ACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAAC
*
1126901 TTAGACTTTACAAAAATTGGTGGGAAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTG
321 TTAGACTTTACAAAAATTGGTGGG-AAAAAAGCCTTTCTTAAGAAACCAAAGAACCAATATCGTG
* * * * * *
1126966 TATCCTAATGAGAAGACTAAGCTTATGGTGACTAATCGTGAAAAGAGTGGGGGATAGTTTGAGTA
385 TATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAAAATGGGGAATAGTATGAGTA
*
1127031 TTGATGTTTGTCTTATTTAAGAGATG
450 TTCATGTTTGTCTTATTTAAGAGATG
* * * *
1127057 AACTTTGATTCTAACAAAAATGGTGGAAAGAAAAGCTTTCCTAGCAACACCAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTC
* * * * * * *
1127122 ATGTATCCTAATGAAGGGAATGCGCTTTAGGTTCCCAATCCTAAAAAGAATGGAGACTATTACGA
66 AAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATAGAAACTATTACGA
* * * * *
1127187 GAATAGATGCTTGTCTTATTTAAGGGACGAACTTTCATTTTAAGGAAAATCGGGCAAAGAAAAGA
131 GAATCGATGCTTGTCTTATTGAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* * * *
1127252 TTTCCATGCAAAAGAAAATCGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAATGC-G
196 TTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGT-CTG
* * ** *
1127316 TAATCATAAAATGAATGAAGATTAATACTAGAATCCATGTTTATCTCATTTGAGGCATGAACTTA
260 TAATCACAAAATGAATGAAGATTAA-ACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAACTTA
* ** * * * *
1127381 GACTTTACAAAATTTGGAAGGAAAAAGGCCTTTTTTAAGAAACCAAAGCACCAAAATCGTGTATC
324 GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGAACCAATATCGTGTATC
* * * * * * *
1127446 CTAATGAGAAGACTATGTTTAGGGTGCCTAATTGTGAAAAGAATGGGGAAGAGTAT-TGTTTTCA
389 CTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAAAATGGGGAATAGTATGAGTATTCA
**
1127510 TGTTTGTCTTATTTAAGAGACA
454 TGTTTGTCTTATTTAAGAGATG
* * * *
1127532 AACTTTGATTCTATCAAAAACGGTGGAAATAAAAGCTTCTGTTGCGACACCAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTC
* * * * *
1127597 AAGTATCCTAATGAAGGAAATGTGTTTTTGGTTCCCAATCCTAAAAAGAATGGAGACTATTATGA
66 AAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATAGAAACTATTACGA
* * * * *
1127662 GAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTTTATGGAAAATAGGGTAAAGAAAAG-
131 GAATCGATGCTTGTCTTATTGAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* * * *
1127726 TTTCCACGCAAACGAAAATCATCAAAATCATTTATCCTAACGAGGAGAATGTGTTTATAGTATGT
196 TTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTCTGT
* * *
1127791 AATCACAAAATGAATGAAGATCAACACTAGAATCCTTGTTTGGATCATTTGAGGCACAAACTTAG
261 AATCACAAAATGAATGAAGATTAA-ACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAACTTAG
* ** * * * *
1127856 ACTTTACAAAAATTGGTGGGAAAAAAAGCCTTTCTT-AGTAAACCAAAGCATAAATCTCATATGT
325 ACTTTACAAAAATTGGTGGG-AAAAAAGCCTTTCTTAAG-AAACCAAAGAACCAATATCGTGTAT
*
1127920 CCTAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAAAATGGGGAATAGTATGAGTATTC
388 CCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAAAATGGGGAATAGTATGAGTATTC
1127985 ATGTTTGTCTTATTTAAGAGATG
453 ATGTTTGTCTTATTTAAGAGATG
* ** * * *
1128008 AACTTTGATTCCATCAAAAACTATGAAAAGAAAAGCTTTTCTAGTGACACCAAAGCAACAATGTC
1 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTC
* * * * *
1128073 GAGTATCCTAATGACGGGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATAGAAACTGTTACGA
66 AAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATAGAAACTATTACGA
* * * * *
1128138 GAATTGATG-TGTGGCTTATTGAAGGGATTAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAG
131 GAATCGATGCT-TGTCTTATTGAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * * *
1128202 ATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAAAATGTGCTTATTGTCCC
195 ATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGT-CT
*
1128267 G-AATCACAAAATGAATGAAGATTATAACTAGAATCCTTGTTTGGCTCATTTGAGACACGAACTT
259 GTAATCACAAAATGAATGAAGATTA-AACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAACTT
* *
1128331 AGACTTTACAAAAATTGGTTGGAAAAAAGCCTTTCTTAAGAAACCAAAGAACCAATATCGTGCAT
323 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGAACCAATATCGTGTAT
* *
1128396 CCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAAAAGGGGGAACAGTATGAGTATTC
388 CCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAAAATGGGGAATAGTATGAGTATTC
* *
1128461 ATATTTGCCTTATTTAAGAGATG
453 ATGTTTGTCTTATTTAAGAGATG
* * * *
1128484 AATTTTGATTCTATCAAAAGCGATGGAAAGAAAAGCTTTTCTAGTGACACCAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTC
* *
1128549 AAGTATCCTAATGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGAAACTATTACGA
66 AAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATAGAAACTATTACGA
* * * *
1128614 GAGTTGATG-TGTGTCTTATTGAAGGGATGAACTTTGATTCTAAGGAAAATAAGGCAAAGAAAAG
131 GAATCGATGCT-TGTCTTATTGAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * * *
1128678 ATTTCCATGC--AA-AAAA--AT--AT-T-GTTTATCCTAAAGCGGAGAATGTGCTTATAGTCTC
195 ATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTCT-
* * *
1128734 G-AATCACCAAATGAATGAAGATTATAACTAGAATCCTTGTTTGGCTCATTTGAGACATGAACTT
259 GTAATCACAAAATGAATGAAGATTA-AACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAACTT
*
1128798 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGAACCAATATCGTGCAT
323 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGAACCAATATCGTGTAT
* *
1128863 CCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAAAAGGGGGAACAGTATGAGTATTC
388 CCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAAAATGGGGAATAGTATGAGTATTC
* *
1128928 ATATTTGCCTTATTTAAGAGATG
453 ATGTTTGTCTTATTTAAGAGATG
* * * *
1128951 AATTTTGATTCTATCAAAAGCGATGGAAAGAAAAGCTTTTCTAGTGACACCAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTC
* *
1129016 AAGTATCCTAATGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGAAACTATTACGA
66 AAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATAGAAACTATTACGA
* * * *
1129081 GAGTTGATG-TGTGTCTTATTGAAGGGATGAACTTTGATTCTAAGGAAAATAAGGCAAAGAAAAG
131 GAATCGATGCT-TGTCTTATTGAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * * *
1129145 ATTTCCATGC--AA-AAAA--AT--AT-T-GTTTATCCTAAAGCGGAGAATGTGCTTATAGTCTC
195 ATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTCT-
* * *
1129201 G-AATCACCAAATGAATGAAGATTATAACTAGAATCCTTGTTTGGCTCATTTGAGACATGAACTT
259 GTAATCACAAAATGAATGAAGATTA-AACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAACTT
*
1129265 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGAACCAATATCGTGCAT
323 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGAACCAATATCGTGTAT
1129330 CCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGT-AAAAAAATGGGGAATAGTATGAGTATTC
388 CCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAAAATGGGGAATAGTATGAGTATTC
* **
1129394 ATGTTTGTATTATTTAAGAGACC
453 ATGTTTGTCTTATTTAAGAGATG
* * *
1129417 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGATTTTCTAGGGACACTAAAGCATCAATGTC
1 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTC
1129482 AA
66 AA
1129484 TCTTGAAAAG
Statistics
Matches: 2610, Mismatches: 267, Indels: 60
0.89 0.09 0.02
Matches are distributed among these distances:
466 106 0.04
467 657 0.25
468 1 0.00
469 2 0.00
471 7 0.00
472 234 0.09
473 7 0.00
474 134 0.05
475 336 0.13
476 588 0.23
477 532 0.20
478 6 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.30
Consensus pattern (475 bp):
AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTC
AAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATAGAAACTATTACGA
GAATCGATGCTTGTCTTATTGAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
TTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTCTGT
AATCACAAAATGAATGAAGATTAAACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAACTTAGA
CTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGAACCAATATCGTGTATCCT
AATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAAAATGGGGAATAGTATGAGTATTCATG
TTTGTCTTATTTAAGAGATG
Found at i:1130196 original size:300 final size:300
Alignment explanation
Indices: 1129601--1130198 Score: 679
Period size: 300 Copynumber: 2.0 Consensus size: 300
1129591 AATCATCAAT
* * * * *
1129601 ATCATTTATCCTAATGAGGAGAATTTGTTTATAGTGCCTAATCATAAATTGAAAGAAGATCATTA
1 ATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCAATA
* * *
1129666 CTAGAATCCATGTTTGTCTCATTTGAGTCACAAACTTAGACTTTATAAAAATTGGTAGGGAAAAT
66 CTAGAATCCATGTTTGGCTCATTTGAGGCACAAACTTAGACTTTAAAAAAATTGGTAGGGAAAAT
* * * * * * * *
1129731 GCTTTTTTGCAAAACTAAAGCATCAATATTGTGTATCCTAATGAGAAGACTATGTTTATGAAACC
131 GCTTTCTTGAAAAACTAAAGCACCAACATCGTGTATCCTAATAAGAAGACTAAGCTTATGAAACC
* *
1129796 TAATCCATAAAAGAATAGGGATTACTATAAGTATTCATGTTTGTTATATTTAAAAGGCAAACTTT
196 TAATCCATAAAAGAATAGGGAATACTATAAGTATTCATGTTTGTTATATTTAAAAGACAAACTTT
* * * * *
1129861 GGTTATATCAAAAATGGTGGAAGGAACAGCTTTTCTTGTA
261 GATTATATCAAAAAAGGTAGAAAGAACAACTTTTCTTGTA
** *
1129901 ATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGTGTAATCACAAAATGAACGAAGATCAATA
1 ATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCAATA
* * * **
1129966 CTAGAATTCTTGTTTGGCTCATTTGAGGCACGAACTTAGGTTTTAAAAAAATTGGT-GGGTTAAA
66 CTAGAATCCATGTTTGGCTCATTTGAGGCACAAACTTAGACTTTAAAAAAATTGGTAGGG--AAA
* * *
1130030 A-GCCTTTCTT-AAAAGACCTAGA-CACCAACATCGTGTGTCCTAATAAGAAGAGTAAGCTTATG
129 ATG-CTTTCTTGAAAA-A-CTAAAGCACCAACATCGTGTATCCTAATAAGAAGACTAAGCTTATG
*** * * * * *
1130092 GTGCCTAAT-CGTGAAAAGAATGGGGAATAGTATGAGTATTTATGTTTGTCT-TATTTAAAAGAC
191 AAACCTAATCCAT-AAAAGAATAGGGAATACTATAAGTATTCATGTTTGT-TATATTTAAAAGAC
* * *
1130155 AACCTTTGATTCTATTAAAAAAGGTAGAAAGAA-AACTTTTCTTG
254 AAACTTTGATTATATCAAAAAAGGTAGAAAGAACAACTTTTCTTG
1130199 CGACACCAAA
Statistics
Matches: 246, Mismatches: 45, Indels: 14
0.81 0.15 0.05
Matches are distributed among these distances:
299 3 0.01
300 121 0.49
301 117 0.48
302 5 0.02
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.33
Consensus pattern (300 bp):
ATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCAATA
CTAGAATCCATGTTTGGCTCATTTGAGGCACAAACTTAGACTTTAAAAAAATTGGTAGGGAAAAT
GCTTTCTTGAAAAACTAAAGCACCAACATCGTGTATCCTAATAAGAAGACTAAGCTTATGAAACC
TAATCCATAAAAGAATAGGGAATACTATAAGTATTCATGTTTGTTATATTTAAAAGACAAACTTT
GATTATATCAAAAAAGGTAGAAAGAACAACTTTTCTTGTA
Found at i:1130811 original size:474 final size:473
Alignment explanation
Indices: 1129920--1130884 Score: 1253
Period size: 474 Copynumber: 2.0 Consensus size: 473
1129910 CCTAACGAGG
* * * * *
1129920 AGAATGTGTTTATAGTG-TGTAATCACAAAATGAACGAAGATCAATACTAGAATTCTTGTTTGGC
1 AGAATGTGCTTATAGTGCCGTAATCACAAAATAAACGAAGATCAATACTAGAATCCATGTTTGGC
** * *
1129984 TCATTTGAGGCACGAACTTAGGTTTTAAAAAAATTGGTGGGTTAAAAGCCTTTCTTAAAAGACCT
66 TCATTTGAGGCACGAACTTAGACTTTAAAAAAATTGGTGGGTAAAAAGCCTTTCTTAAAAGACCA
* ** * * * * * * *
1130049 AGACACCAACATCGTGTGTCCTAATAAGAAGAGTAAGCTTATGGTGCCTAATCGTGAAAAGAATG
131 AAACACCAACATCACGTATCCAAATAAGAAGACTAAGCTTATGGTGCCAAATCCTAAAAAAAATG
* * * * *
1130114 GGGAATAGTATGAGTATTTATGTTTGTCTTATTTAAAAGACAACCTTTGATTCTATTAAAAAAGG
196 GGGAATAGTATAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAAAGG
* * *
1130179 TAGAAAGAAAACTTTTCTTGCGACACCAAAGCATCAATGCCTTGTATGCTAATGAATGGAATGTG
261 TAGAAAGAAAACTTTTCTTCCGACACCAAAGCATCAATGCCTTGTATCCTAATGAATGGAATATG
* * * *
1130244 TTTTTGGTTCCTAATCCTGAAAAGAATGGAGACTATTGCGAGAATCAATGCTTGTCTTATTTAAG
326 TTTTTGGTTCCCAATCCTGAAAAGAAGGGAGACTATTACGAGAATCAATGCTTGTCTTAGTTAAG
*
1130309 GGATGAACTTTGATTTTAATGAAAATAGGGCAAAGAAAGGA-TTTCTATGCCAAAGAAAATCATC
391 GGATGAACTTTGATTTTAATGAAAATAGGGCAAAGAAAGGATTTTC-ATGCAAAAGAAAATCATC
1130373 AACATCATTTATTATGAGA
455 AACATCATTTATTATGAGA
* * * *
1130392 AGAATGTGCTTATAGTGCCG-AATCACAAAATAAATGAAGATTAGTACTAGAATCCATGTTTGTC
1 AGAATGTGCTTATAGTGCCGTAATCACAAAATAAACGAAGATCAATACTAGAATCCATGTTTGGC
** **
1130456 TCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGTGGG-AAAAATGCCTTTCTTTTCAA-AC
66 TCATTTGAGGCACGAACTTAGACTTTAAAAAAATTGGTGGGTAAAAA-GCCTTTC-TTAAAAGAC
* * ** * *
1130519 CAAAACATCAATATCACGTATCCAAATGTGAAGACTATGTTTATGGTGCCAAATCCTAAAAAAAA
129 CAAAACACCAACATCACGTATCCAAATAAGAAGACTAAGCTTATGGTGCCAAATCCT-AAAAAAA
* * * *
1130584 ATGGGGATTCA-TCTAACTATTCATGTTTGTCTTATTTAGAAGGCAAACTTTGATTCTATCAAAA
193 ATGGGGAAT-AGTATAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAA
* * * *
1130648 ATGGTGGAAAGAAAAGCTTTTCTTCCGACCCCAAAGCATCAATGTCTTGTATCCTAATGAA-GAG
257 AAGGTAGAAAGAAAA-CTTTTCTTCCGACACCAAAGCATCAATGCCTTGTATCCTAATGAATG-G
* * * * *
1130712 AATATGTTTTTGGTTCCCAATCTTGAAAAGAAGGGAGACTGTTATGAGAATCGATTCTTGTCTTA
320 AATATGTTTTTGGTTCCCAATCCTGAAAAGAAGGGAGACTATTACGAGAATCAATGCTTGTCTTA
*
1130777 GTTAGGGGATGAACTTTGATTTTAAT-AGAAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAA
385 GTTAAGGGATGAACTTTGATTTTAATGA-AAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAA
*
1130841 ATCATCAATATCATTTATTATGAGA
449 ATCATCAACATCATTTATTATGAGA
1130866 AGAATGTGCTTATAGTGCC
1 AGAATGTGCTTATAGTGCC
1130885 TCCTTAGTAT
Statistics
Matches: 423, Mismatches: 61, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
471 4 0.01
472 141 0.33
473 78 0.18
474 196 0.46
475 4 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (473 bp):
AGAATGTGCTTATAGTGCCGTAATCACAAAATAAACGAAGATCAATACTAGAATCCATGTTTGGC
TCATTTGAGGCACGAACTTAGACTTTAAAAAAATTGGTGGGTAAAAAGCCTTTCTTAAAAGACCA
AAACACCAACATCACGTATCCAAATAAGAAGACTAAGCTTATGGTGCCAAATCCTAAAAAAAATG
GGGAATAGTATAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAAAGG
TAGAAAGAAAACTTTTCTTCCGACACCAAAGCATCAATGCCTTGTATCCTAATGAATGGAATATG
TTTTTGGTTCCCAATCCTGAAAAGAAGGGAGACTATTACGAGAATCAATGCTTGTCTTAGTTAAG
GGATGAACTTTGATTTTAATGAAAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATCA
ACATCATTTATTATGAGA
Found at i:1132065 original size:15 final size:15
Alignment explanation
Indices: 1132045--1132075 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1132035 TAAAAATGTC
*
1132045 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1132060 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1132075 C
1 C
1132076 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1134162 original size:13 final size:13
Alignment explanation
Indices: 1134144--1134182 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1134134 ACATTTTTCT
1134144 TTGTATCGATACA
1 TTGTATCGATACA
1134157 TTGTATCGATACA
1 TTGTATCGATACA
*
1134170 CTGTATCGATACA
1 TTGTATCGATACA
1134183 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1136723 original size:13 final size:13
Alignment explanation
Indices: 1136705--1136730 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1136695 TACAGCAAGT
1136705 ATGTATCGATACA
1 ATGTATCGATACA
1136718 ATGTATCGATACA
1 ATGTATCGATACA
1136731 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1138614 original size:159 final size:159
Alignment explanation
Indices: 1137496--1139106 Score: 464
Period size: 159 Copynumber: 10.2 Consensus size: 159
1137486 CTATTCATGT
* * * * * * *
1137496 TTGTCTTATTTAAGAGTCAAACTTTGATACTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTG
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTCTATTGCG
* * * * * * * * * *
1137561 ACACCAAAGCATCAATTTCTTGTAT--GAATGAAGGGAACGTGTTTGTAGTTCCCAATCCTGAAA
66 ACACCAAAGCATCAATATCTTGTATCCTAATGAAGAGAATGAGCTTATAGTGCCTAATCCTTAAA
* *
1137624 AGAATGGAGATTGTTAGGAGAATCAATGC
131 AGAATGGAGATTGTTATGAGAATCGATGC
* ** * *** * * * *
1137653 TTGTCTTATTTAAGGGATGAACTTTGATTTTAGGGAAAATAGG-GCAAAGAAAAGATTTCCA-CG
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAG-CTTCTATTG
* * ** * * * * * * *
1137716 CAAAAGAAAATCATTAGTATCGTT-TATCCTAATGAGGAGAATGTGTTTATAGTGCATAATCAC-
64 CGACACCAAAGCATCAATATC-TTGTATCCTAATGAAGAGAATGAGCTTATAGTGCCTAATC-CT
* *** * *
1137779 -AAAATGAATGAAGATCAATACT-AGAATTC-TTGT
127 TAAAA-GAATGGAGATTGTTA-TGAGAA-TCGATGC
* * * ** * * * ** *
1137812 TTGGCTCATTTGAG-GTATGAACTTAGACTT-TA-AAAAAATTGGGGGGGA-AAAAGCCTT-TCT
1 TTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAAAG-CTTCTAT
** * * * * * * **
1137872 TAAGAAACCAAAGCACCAATATCGTGTATCCTAATG-AGAAGACTAAGCTTATGGTGCCTAATTG
62 TGCGACACCAAAGCATCAATATCTTGTATCCTAATGAAG-AGAATGAGCTTATAGTGCCTAATCC
* * * * ** **
1137936 TGAAAAGAATGGGGAATAG-TATGAGTAT-TTTTT
126 TTAAAAGAATGGAG-ATTGTTATGAGAATCGATGC
* * * * *
1137969 TTGTCTTATGTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCG
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTCTATTGCG
* * *** * * * * *
1138034 ACACCAAAGCATCAATGTCTTGTATCCTAATGAA-AGGAACGTTTTTTTTGTTCCTAATCGTGAA
66 ACACCAAAGCATCAATATCTTGTATCCTAATGAAGA-GAATGAGCTTATAGTGCCTAATCCTTAA
* * * * *
1138098 AGAGAACGAAGACTATTGTGAGAATCGATGC
130 A-AGAATGGAGATTGTTATGAGAATCGATGC
* * * * *** * * * *
1138129 TGGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAGGATTTCCA-TG
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAG-CTTCTATTG
* ** * * * * * *
1138192 CGAAAGAAAATCATCATTATCAAT-TAT--T-ATG-AGAAGAATGTGCTTATAGTGCCGAAT-CA
64 CGACACCAAAGCATCAATATC-TTGTATCCTAATGAAG-AGAATGAGCTTATAGTGCCTAATCCT
* * * * * * *
1138251 GAAAATGAATGAAGATTATTACT-ACAATCTAAGT
127 TAAAA-GAATGGAGATTGTTA-TGAGAATCGATGC
* * * * * * * *
1138285 TTGTCTCATTT-GGGGTACGAACTTAGACTTC--GCAAAAATTGG-GAGGAA-AAATGCCTTTCT
1 TTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-TGGTG-GAAAGAAAAG-C-TTCT
* * * * * *
1138345 -TT-CGAAACCAAAACATCAATATCGTGTATCCTAATG-AGAAGACT-ATGTTTATGGTGCCTAA
60 ATTGCGACACCAAAGCATCAATATCTTGTATCCTAATGAAG-AGAATGA-GCTTATAGTGCCTAA
* * * * *
1138406 T-CTTGAAAAAAATGGGGATTAGTCTA--ACTATTC-TTGC
123 TCCTT-AAAAGAATGGAGATT-GT-TATGA-GAATCGATGC
*
1138443 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTCTATTGTG
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTCTATTGCG
* * * * *
1138508 ACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGAGTTTGTAGTTCCTAATCCTTAAA
66 ACACCAAAGCATCAATATCTTGTATCCTAATGAAGAGAATGAGCTTATAGTGCCTAATCCTTAAA
*
1138573 AGAATGGAGATTGTTATGAGAATCGAAGC
131 AGAATGGAGATTGTTATGAGAATCGATGC
* * ** * * *
1138602 TTGCCTTATTTAAGGGATGAACTTTGATT-T-TCAGGAAAATAGG-GCAAAGAAAAGATTTCCA-
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCA--AAAAT-GGTGGAAAGAAAAG-CTTCTAT
* * ** * ** * *
1138663 TGCAAAAAAAAATCATCAATATCATT-TGCCCTAATGAAGAGAATGTGCTTATAGTGCCGAATCA
62 TGCGACACCAAAGCATCAATATC-TTGTATCCTAATGAAGAGAATGAGCTTATAGTGCCTAATC-
* * * * *
1138727 C--AAAATGAAAGAAGATTATTACT-AGAATCCATGT
125 CTTAAAA-GAATGGAGATTGTTA-TGAGAATCGATGC
* * * * * * * *
1138761 TTGTGTCATTT--GAGACATGAACTTAGATTTTGT-AAAAATTGGTGGGAA-AAATGC-TCTTGT
1 TTGTCTTATTTAAGAGACA--AACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTC-TAT
** * * * * *
1138821 TTTGA-AGCCAAAACATCAATATCCTGTATTCTAAT-AAGAAGACT-ATGCTTATCA-TGCCAAA
62 TGCGACA-CCAAAGCATCAATATCTTGTATCCTAATGAAG-AGAATGA-GCTTAT-AGTGCCTAA
* * * * * *
1138882 TCCTGAAAAGAATGGGAAAGTGTT-TGTGTATTC-ATGT
123 TCCTTAAAAGAAT-GGAGATTGTTATGAG-AATCGATGC
* * **
1138919 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCTGCG
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTCTATTGCG
* * * * * *
1138984 ACACCAAAGCATCAATGTCTTGTATCCTAGTGAAGGGAATGCA-TTTGTAGTTCCTAAT-CTTGA
66 ACACCAAAGCATCAATATCTTGTATCCTAATGAAGAGAATG-AGCTTATAGTGCCTAATCCTT-A
* *
1139047 AAAGATTGGAGATTGTTACGAGAATCGATGC
129 AAAGAATGGAGATTGTTATGAGAATCGATGC
* **
1139078 TTGTCTTATTTAAGGGATGAACTTTGATT
1 TTGTCTTATTTAAGAGACAAACTTTGATT
1139107 TGAAGAAAAT
Statistics
Matches: 1032, Mismatches: 317, Indels: 208
0.66 0.20 0.13
Matches are distributed among these distances:
154 1 0.00
155 35 0.03
156 52 0.05
157 134 0.13
158 311 0.30
159 396 0.38
160 96 0.09
161 7 0.01
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (159 bp):
TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTCTATTGCG
ACACCAAAGCATCAATATCTTGTATCCTAATGAAGAGAATGAGCTTATAGTGCCTAATCCTTAAA
AGAATGGAGATTGTTATGAGAATCGATGC
Found at i:1139934 original size:474 final size:473
Alignment explanation
Indices: 1137482--1147106 Score: 11235
Period size: 474 Copynumber: 20.4 Consensus size: 473
1137472 TAAGCTTTCA
* * * *
1137482 CTAACTATTCATGTTTGTCTTATTTAAGAGTCAAACTTTGATACTTTCAAAAACGGTGGAAAGAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * * * *
1137547 AAGCTTTTCTTGTGACACCAAAGCATCAATTTCTTGTAT--GAATGAAGGGAACGTGTTTGTAGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * *
1137610 TCCCAATCCTGAAAAGAATGGAGATTGTTAGGAGAATCAATGCTTGTCTTATTTAAGGGATGAAC
131 TCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * * * *
1137675 TTTGATTTTAGGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATTAGTATCGTT
196 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
* * ** * *
1137740 TATCCTAATGAGGAGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCAATACTAGAA
261 TAT--T-ATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
* * * * * *
1137805 TTCTTGTTTGGCTCATTTGAGGTATGAACTTAGACTTTAAAAAAATTGGGGGGGAAAAA-GCCTT
323 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT-GGGGGGAAAAATGCCTT
** * * *
1137869 TCTTAAGAAACCAAAGCACCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAAT
387 TCTTTTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
** * *
1137934 TGTGAAAAGAATGGGGAATAGT
452 CCTGAAAAAAATGGGGATTAGT
* * * * * *
1137956 ATGAGTATT-TTTTTTGTCTTATGTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * *
1138020 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAAGGAACGTTTTTTTTGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * * * * *
1138085 TCCTAATCGTGAAAGAGAACGAAGACTATTGTGAGAATCGATGCTGGTCTTATTTAAGGGATAAA
131 TCCCAATCCTGAAA-AGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * *
1138150 CTTTGATTTTAAGGAAAATAGGGCAAAGAAAGGATTTCCATGCGAAAGAAAATCATCATTATCAA
195 CTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* *
1138215 TTATTATGAGAAGAATGTGCTTATAGTGCCGAATCAGAAAATGAATGAAGATTATTACTACAATC
260 TTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAATC
* * * * ** *
1138280 TAAGTTTGTCTCATTTGGGGTACGAACTTAGACTTCGCAAAAATTGGGAGGAAAAATGCCTTTCT
325 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAATGCCTTTCT
* * *
1138345 TTCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTT
390 TTTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
1138410 GAAAAAAATGGGGATTAGT
455 GAAAAAAATGGGGATTAGT
* * * *
1138429 CTAACTATTCTTGCTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * * * *
1138494 AAGCTTCTATTGTGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGAGTTTGTAGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * * * *
1138559 TCCTAATCCTTAAAAGAATGGAGATTGTTATGAGAATCGAAGCTTGCCTTATTTAAGGGATGAAC
131 TCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* *
1138624 TTTGATTTTCAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAATATCATT
196 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
* * *
1138689 TGCCCTAATGA-AGAGAATGTGCTTATAGTGCCGAATCACAAAATGAAAGAAGATTATTACTAGA
261 T---ATTATGAGA-AGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGA
* * * * ** *
1138753 ATCCATGTTTGTGTCATTTGAGACATGAACTTAGATTTTGTAAAAATTGGTGGGAAAAATG-CTC
322 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAATGCCT-
* * * * * * * ** *
1138817 TTGTTTTGAAGCCAAAACATCAATATCCTGTATTCTAATAAGAAGACTATGCTTATCATGCCAAA
386 TTCTTTTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* * *
1138882 TCCTGAAAAGAATGGGAAAGT-GT
451 TCCTGAAAAAAATGGG-GATTAGT
* *** *
1138905 TTGTGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * ** * *
1138970 AAGCTTTTCCTGCGACACCAAAGCATCAATGTCTTGTATCCTAGTGAAGGGAATGCATTTGTAGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * * * *
1139035 TCCTAATCTTGAAAAGATTGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
131 TCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * * **
1139100 TTTGATTTGAA-GAAAATAGGGCAGAGAAAAGATTTTCACACAAAAGAAAATCATCAATATCATT
196 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
* * * * * * *
1139164 TATCCTAAAGAGGAGAATGTGTTTAAAGTG-CGTAATCACAAAATGAATGAAGATCAATACAAGA
261 TAT--T-ATGAGAAGAATGTGCTTATAGTGCCG-AATCACAAAATGAATGAAGATTATTACTAGA
* * * * * * *
1139228 ATTCTTGTTTGGCTCATTCGAGGCACGAACTTAGACTTTAAAAAAATTGGTGGGAAAAAAGCCTT
322 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAATGCCTT
** * * * * * *** *
1139293 TCTTAAGAGACCCAAGCACCAAGATCGTGTATCCTAATGAGAAGACAAAACTAATGGTGCCTAA-
387 TCTTTTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* *
1139357 CCGTGAAAAGAATGGGGAATAGT
452 CC-TGAAAAAAATGGGGATTAGT
* * * * * *
1139380 ATGAGTATTTATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATTACAAACGGTGGAAAGAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * * * *
1139445 AAGCTTTTTTTGCGACACCAAAGCATCAACGTCTTGTATCCAAATGAAAGAAATGTGTTTTTTGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * *
1139510 TCCTAATCGC-GAAAAGAATGGAGACTATTGTGAGAATCGATGCTTGCCTTATTTATA-GGATGA
131 TCCCAATC-CTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTA-AGGGATGA
*
1139573 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCTTGCAAAAGAAAATCATCAATATCA
194 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * * *
1139638 TTTATTATGAGAAGAATGTGCTTATAGTGCCAAATTAGAAAATGAATGAAGATTTTTACTAGAAT
259 TTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAAT
* * * *
1139703 CCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTGCAAAAATTAGGGGGGGAAAATGCCTTT
324 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT-GGGGGGAAAAATGCCTTT
* * *
1139768 CTTTTGAAACCTAAA-CACCAATATCGTGTATCCAAATGAGAAGACTATGTTTATGGTGCCAAAT
388 CTTTTGAAACC-AAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
*
1139832 CCTAAAAAAAATGGGGATTAGT
452 CCTGAAAAAAATGGGGATTAGT
* * * *
1139854 CTAACAATTCATGTTTGTCTTATTTAAAAGGCAAACTTGGATTCTTTCAAAAACGGTGGAAAGAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * * *
1139919 AAGCCTTTCTTGCGACCCCAAAGCATTAGTGTCTTGTATCCTAGTGAAGGGAATGTGTTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * *
1139984 TCCAAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTCGTCTTATTTAAGGGAAGAAC
131 TCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * * *
1140049 TTTGATTTTATGGAAAATAGGGCGAAGAAAAGATTTCCACGGAAAAGAAAATCATCAATATCATT
196 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
* * * ** * * * *
1140114 TATCCTAATGAGAAGAATTTGTTTATAGTG-TGTAATCACAAAATGAACAAAAATAAATGCTAGA
261 TAT--T-ATGAGAAGAATGTGCTTATAGTGCCG-AATCACAAAATGAATGAAGATTATTACTAGA
* * * ** * * *
1140178 ATTCTTGTTTGGCTCATTTGAGGCAC-AATCTTAGGTTTTAAAAAAATTGGTGGGAAAAAAGCCT
322 ATCCATGTTTGTCTCATTTGAGGCACGAA-CTTAGACTTTACAAAAATTGGGGGGAAAAATGCCT
** * * * * * * * * *
1140242 TTCTTAAGAGACCCAGGCACCAACATCGTGTGTCCTAATGAGAAGAATAAGCTTATGGTGCCTAA
386 TTCTTTTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* * *
1140307 TCGTGAAAAGAATGGGGAATAGT
451 TCCTGAAAAAAATGGGGATTAGT
* * * * ** * *
1140330 ATGAA-TATTTATGTTTGTCTTATTTAAAAGACAAGCTTTGATTCTATTAAAAATAGTAGAAAAA
1 CT-AACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
* * * * *
1140394 AAAACTTTTCTTGCGACACCAAGGCATCAATGTCTTTTATGCTAATGAAAGGAATGTGTTTTTGG
65 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGG
* * ** * **
1140459 TTCCTAATCGTGAAAAGAATGGAGACTATTGCGAGTATTAATGCTTGTCTTATTTAAGGGATGAA
130 TTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * *
1140524 CTTTGATTTTAATGAAAATAGGGCAAAGAAAGGATTTCCATACAAAAGAAAATCATCAATATCA-
195 CTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* *
1140588 TTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATAAATGAAGATTAGTACTAGAATC
260 TTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAATC
* * *
1140653 CATGTTTGTCTCATTTGAGGCACGAACTTAGACATTGCAAAAATTGGTGGGAAAAATGCCTTTCT
325 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAATGCCTTTCT
* * * * **
1140718 TTTGAAACCAAAACATCAATATTGTGTATCCAAATGAGAAGACAATGTTTATGGTGCAAAATCCT
390 TTTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
*
1140783 -AAAAAAATGGGGATTCGT
455 GAAAAAAATGGGGATTAGT
* * *
1140801 CTAACTATTCATGTTTATCTTATTTAAAAGGCAAACTTTGATTCTATCAAAAATGGTGGAAAGAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * * *
1140866 AAGCTTTGCTTGC-ACCCCAAAGCATCAATGTCTTATATCCTAACGAAGAGAATGTGTTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * * *
1140930 TCCCAATCTTGAAAAGAATAGAGACTATTATGAGAATCGATGCCTATCTTATTTAGGGGATGAAC
131 TCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * *
1140995 TTTGATTTTAAGAAAAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATCAATATCATT
196 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
* *
1141060 TATTATGAGAAAAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTACAATCC
261 TATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAATCC
* * *
1141125 ATGTTTGTCTCATTTGAGGCACGAACTCAGACTTTGCAAAAATTTGGGAGG-AAAATGCCTTTCT
326 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-TTGGGGGGAAAAATGCCTTTCT
* *
1141189 TTTGAAACCAAAGCATCAATATCGCGCATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
390 TTTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
1141254 --AAAAAATGGGGATTAGT
455 GAAAAAAATGGGGATTAGT
1141271 CTAACTATTCATGTTTG-------T----------C-TT-ATT-TA--AAAAACGGTGGAAAGAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* *** * * * ** *
1141314 AAGCTTTTCTTGCGACACCAAAGCATCAA-TTTC--T-TGT---AT-C-AATGAAGGGAATGTGT
66 AAGC---T-TTTC-TTGCGACACCA--AAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGT
* * * * *
1141370 TTGTAGTTCCCAATCCTGAAAAGAATGGAAATTGTTATGAGAATCGATGCTTGTCTTATTTAAGG
124 TTTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGG
* * *
1141435 GATGAACTTTGATTTTAGGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAG
189 GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * * ** * *
1141500 TATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCAAT
254 TATCATTTAT--T-ATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATT
* * * * * *
1141565 ACTAGAATTCTTGTTTGGCTCATTTGAGGTACGAACTTAGACTTTAAAAAAATTAGGGGGAAAAA
316 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAA
* ** * * * * *
1141630 AGCCTTTCTTAAGAAACCAAAGCACCAACATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTT
381 TGCCTTTCTTTTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG
* * *
1141695 CCTAATCGTGAAAAGAATGGGGAATAGT
446 CCTAATCCTGAAAAAAATGGGGATTAGT
* * * * *
1141723 ATGAGTATTTAT-TTTCGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGGAAGA
1 CTAACTATTCATGTTT-GTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
* * * **
1141787 AAAGCCTTTCTTGCGACCCCAAAGCATCAGTGTCTTGTATCCTAGCGAAGGGAATGTGTTTTTGG
65 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGG
* *
1141852 TTCCCAATACTGAAAAGAAT---G----TTATGAGAATCGATGCCTGTCTTATTT-AGCGGATGA
130 TTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAG-GGATGA
* * * *
1141909 ACTTTGATTTTAA-TAGAAATAGGGCAAAGAAAGGATTTTCATGTAAAAGAAAATCATCAATATC
194 ACTTTGATTTTAAGGA-AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* *
1141973 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCATAAAATGAATGAAGATTATTACTACAA
258 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
* * * *
1142038 TCCATGTTTGTCTCATTTGAGGCACGAAGTAAGACTTTACAAAAATTTGGGAGG-AACATGCCTT
323 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-TTGGGGGGAAAAATGCCTT
* *
1142102 TCTTTTGAAACCAAACCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
387 TCTTTTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
*
1142167 CCT-AAAAAATTGGGGATTAGT
452 CCTGAAAAAAATGGGGATTAGT
* *
1142188 CTAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * * *
1142253 AAGCTTTTCTTGTGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAAGGCGTTTGTAGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * *
1142318 TCCCAATCCTTAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAAC
131 TCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * * **
1142383 TTTGATTTTATGGAAAATAGGGCGAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATTGTT
196 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
* * * * * *
1142448 TATCCTAATGAGGAGAAT-TTCTTTATTGTG-TGTAATCACAAAATGAATGAAGATCAATACTAG
261 TAT--T-ATGAGAAGAATGTGC-TTATAGTGCCG-AATCACAAAATGAATGAAGATTATTACTAG
* * * ** * * *
1142511 AATTCTTGTTTGGCTCATTTGAGGCACGAACTTAGGTTTTAAAAAAATTGGTGGGAAAAAAGCCT
321 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAATGCCT
** * * * * * * * * *
1142576 TTCTTAAGAGACCTAGGCACCAACATCGTGTGTCCTAATGAGAAGAGTAAGCTTATGGTGCCTAA
386 TTCTTTTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* * *
1142641 TCGTGAAAAGAATGGGGAATAGT
451 TCCTGAAAAAAATGGGGATTAGT
* * * * * ** *
1142664 ATGAGTATTTATGTTTGTCTTATTTAAAAGACAAGCTTTGATTCTA-CTAAAAATAGTAGAAAGA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATC-AAAAACGGTGGAAAGA
* * * **
1142728 AAAGCTTTTCTTGCGACACCAAGGCATCAATGTCTTTTATGCTAATGAAAAGAATGTGTTTTTGG
65 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGG
* ** * **
1142793 TTCCTAATCCTGAAAAGAATGGAGACTATTGCGAGTATTAATGCTTGTCTTATTTAAGGGATGAA
130 TTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * * *
1142858 CTTTGATTTTAATGAAAATAGGGCAAAGAAAGGATATCCATACAAAAGAAAATCAACAATATCAT
195 CTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* * *
1142923 TTATTATGAGAAGAATGTGCCTATAGTGCCGAATCACAAAATAAATGAAGATTAGTACTAGAATC
260 TTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAATC
* * ** *
1142988 CATGTTTGTCTCATTTAAGGCCCGAACTTAGACTTCGCAAAAATTGGTGGGAAAAATGCCTTTCT
325 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAATGCCTTTCT
* * * * * * *
1143053 TTTGAAACAAAAACATCAATATTGCGTATCCAAATGAGAAGACAATGTTTATGGTGCCAAATCCT
390 TTTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
*
1143118 AAAAAAAAAATGGGGATTCA-T
455 --GAAAAAAATGGGGATT-AGT
* *
1143139 CTAACTATTCATGTTTGTCTTATTTAAAAGGCAAACTTTGATTCTATCAAAAATGGTGGAAAGAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * **
1143204 AAGCTTTTCTTGC-ACCCCAAAGCATCAATGTCTTATATCCTAACGAAAAGAATGTGTTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * *
1143268 TCCCAATCTTGAAAAGAATAGAGACTATTATGAGAATCGATGCCTGTCTTATTTAGGGGATGAAC
131 TCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * *
1143333 TTTGATTTTAAGAAAAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATCAATATCATT
196 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
* * *
1143398 TATTATGAGAAAAATGTGCTTCTAGTGCCGAATCACAAAATGAATGAAGATTATTACTACAATCC
261 TATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAATCC
* * * * *
1143463 ATGTTTGTCTCATTTGAGGCACGAAATTAAACTTTGCAAAAATTTTGGAGG-AAAATGCCTTTCT
326 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-TTGGGGGGAAAAATGCCTTTCT
* *
1143527 TTTGAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTGATCC-
390 TTTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
**
1143591 -AAAAAAAAAGGGATTAGT
455 GAAAAAAATGGGGATTAGT
* *
1143609 CTAAATATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC-ATCAAAAACGGTGGAAAGAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * *
1143673 AAGCTTTTCTTGCGACACCAAAGCATCAATTTCTTGTAT--GAATGAAGGGAATGTGTTTGTAGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * * *
1143736 TCTCGATCCTGAAAAGAATGGAAATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
131 TCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * * *
1143801 TTTGATTTTAGGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAGTATCGTT
196 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
* * ** * *
1143866 TATCCTAATGAGGAGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCAATACTAGAA
261 TAT--T-ATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
* * * * * *
1143931 TTCTTGTTTGGCTCATTTGAGGTACGAACTTAGACTTTAAAAAAATTGGGGGGAAAAAAGCCTTT
323 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAATGCCTTT
** * * * * * * *
1143996 CTTAAGAAATCAAAGCACCAACATCGTGTATCCTAATGAGAAGACTAAGCTGATGGTTCCTAATC
388 CTTTTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * *
1144061 GTGAAAAGAATGGGGAATAGT
453 CTGAAAAAAATGGGGATTAGT
* * * * * *
1144082 ATGAGTATTTATTTTTGTCTTATTTAAAAGACAATCTTTGATTCTATCAAAAACGGTGGAAAGAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * **
1144147 AAGCCTTTCTTGCGACCCCAAAGCATCAGTGTCTTGTATCCTAGCGAAGGGAATGTGTTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGT
1144212 TCCCAA-CGCTGAAAAGAAT---G----TTATGAGAATCGATGCTTGTCTTATTT-AGCGGATGA
131 TCCCAATC-CTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAG-GGATGA
* * * *
1144268 ACTTTGATTTTAA-TAGAAATAGGGCAAGGAAAGGATTTTCATGCAAAAGAAAATCATCAATATC
194 ACTTTGATTTTAAGGA-AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *
1144332 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCATAAAATGAATGAAGATTATTACAACAA
258 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
* * * *
1144397 TCCATGTTTGTCTCATTTGAGGCACGAAGTAAGACTTTACAAAAATTTAGGAGG-AAAATGCCTT
323 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-TTGGGGGGAAAAATGCCTT
* *
1144461 TCTTTTGAAACCAAACCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
387 TCTTTTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
1144526 CCT-AAAAAAATGGGGATTAGT
452 CCTGAAAAAAATGGGGATTAGT
* *
1144547 CTAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGG--AAAG
* * ** *
1144612 AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCTTATATCCTAACAAAGAGAATGTGTTTTTG
64 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTG
* * * *
1144677 GTTCCCAATCTTGAAAAGAATAGAGACTATTATGAGAATCGATGCCTGTCTTATTTAGGGGATGA
129 GTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * *
1144742 ACTTTGATTTTAAGAAAAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATCAATATCA
194 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * * * *
1144807 TTTATTATGATAAAAATGTGCTTATAGTGCCGAGTCACAAAATGAATAAAGATTATTACTACAAT
259 TTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAAT
* * * *
1144872 CCATGTTTGTCTCATTTGAGGCACGAACTCAGACTTTGCAAAAATTTGGGAGG-AAAATGCATTT
324 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-TTGGGGGGAAAAATGCCTTT
*
1144936 CTTTTGAAACTAAAGCATCAATATCGCT-TATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
388 CTTTTGAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
*
1145000 CCT--AAAAAATGGGGATTACT
452 CCTGAAAAAAATGGGGATTAGT
* * *
1145020 CTAACTATTCATGTTTGTCTTATTTCAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * *
1145085 AAGCTTTTCTTGCGACACCAAAGCATCAATTTCTTGTAT-C-AATGAAGGGAGTGTGTTTGTAGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * *
1145148 TCCCAATCGTGAAAAGAATGGAAATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
131 TCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * * *
1145213 TTTGATTTTAGGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAGTATCGTT
196 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
* * ** * * *
1145278 TATCCTAATGAGGAGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCAATACAAGAA
261 TAT--T-ATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
* * * * * *
1145343 TTCTTGTTTGGCTCATTTGAGGTACGAACTTAGACTTTAAAAAAATTGGGGGGAAAAAAGCCTTT
323 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAATGCCTTT
** * * * * * * *
1145408 CTTAAGAAATCAAAGCACCAACATCGTGTATCCTAATGAGAAGAGTAAGCTTATGGTTCCTAATC
388 CTTTTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* *
1145473 GC-GAAAAGAATGGGGAATAGT
453 -CTGAAAAAAATGGGGATTAGT
* * * * *
1145494 ATGAGTATTTATTTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * **
1145559 AAGCCTTTCTTGCGACCCCAAAGCATCAGTGTCTTGTATCCTAGCGAAGGGAATGTGTTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGT
1145624 TCCCAA-CGCTGAAAAGAAT---G----TTATGAGAATCGATGCTTGTCTTATTT-AGCGGATGA
131 TCCCAATC-CTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAG-GGATGA
* * *
1145680 ACTTTGATTTTAA-TAGAAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATCAATATC
194 ACTTTGATTTTAAGGA-AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* *
1145744 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCATAAAATGAATGAAGATTATTACTACAA
258 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
* * * *
1145809 TCCATGTTTGTCTCATTTGAGGCACGAAGTAAGACTTTACAAAAATTTAGGAGG-AAAATGCCTT
323 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-TTGGGGGGAAAAATGCCTT
* *
1145873 TCTTTTGAAACCAAACCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
387 TCTTTTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
1145938 CCT-AAAAAAATGGGGATTAGT
452 CCTGAAAAAAATGGGGATTAGT
* * *
1145959 CTAACTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
** * * * * *
1146024 AAGCTTTTCTTATGACACCAAATCATCAATGTCTTGTATCCTAATGAAGGGAAGGCGTTTGTAGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * *
1146089 TCCCAATCCTTAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATTAAC
131 TCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* ** ** *
1146154 TTTGATTTTATGGAAAATAGGGTGAAGAAAAGATTTCCACACAAAAGAAAATCATCAATATCGTT
196 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
* * ** * * * *
1146219 TATCCTAATGAGGAGAATTTTTTTATAGTG-TGTAATCACAAAATGAACGAAGATCAATACTAGA
261 TAT--T-ATGAGAAGAATGTGCTTATAGTGCCG-AATCACAAAATGAATGAAGATTATTACTAGA
* * * ** * **
1146283 ATTCGTGTTTGGCTCATTTGAGGCACGAACTTAGGTTTTAAAAAAATTGGTAGGAAAGAA-GCCT
322 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAA-AATGCCT
* ** * * * * * * * * *
1146347 TTATTAAGAGACC-CAGCCACCAACATCGTGTGTCCTAATGTGAAGAGTAAGCTTATGGTGCCTA
386 TTCTTTTGAAACCAAAG-CATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * *
1146411 ATCGTGAAAAGAATGGGGAATAGT
450 ATCCTGAAAAAAATGGGGATTAGT
* * * * * * * *
1146435 ATGAGTATTTATGTTTGTTTTATTTAAAAGACAAGCTTTGATTCTATTAAAAACGGTAGAAAGAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * * * * * *
1146500 AAGCTTTTCTTGCAACACCAAGGCATCAATATCTTTTGTGCTAATGAAAGGAATGTGTTTTTCGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGT
* ** * *
1146565 TCCTAATCCTGAAAAGAATGGAGACTATTGCGAGTATCAATGCTTGTCTTATTTAAGGGATGAAC
131 TCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * * *
1146630 TTTGATTTTAATGAAAATATGGCAAAGAAAGGATTTCCATGCAAAAGAAAATCAGCAATATCATT
196 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
* * *
1146695 TATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATAAATGAAGATTAGTATTAGAATCC
261 TATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAATCC
* * * * *
1146760 ATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTGCAAAAACTGGTGAGAAAAATGCCTTTCTT
326 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAATGCCTTTCTT
* * * * * *
1146825 TTGAAACCAAAACATCAATATTGCGTATCCAAATGAGAAGACAATGTTTATGGTGCCAAATCCTA
391 TTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-
* *
1146890 AAAAAAAATGGGGATTCGT
455 GAAAAAAATGGGGATTAGT
* * *
1146909 CTAACTATTCATGTTTGTCTTATTTAACAGGCAAACTTTGATTCTATCAAAAATGGTGGAAAGAA
1 CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * * *
1146974 AAGCTTTTCTTGCGACCCCAAAGCATCAATGTCTTATATCCTCATGAAGAGAATGTGTTTCTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGT
* * * ** *
1147039 TCCCAATCTTGAAAAAAATAGAGACTATTATGAGAATCGATGCCCGTCTTATTTAGGGGATGAAC
131 TCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
1147104 TTT
196 TTT
1147107 TGATGAAAAC
Statistics
Matches: 7713, Mismatches: 1259, Indels: 358
0.83 0.13 0.04
Matches are distributed among these distances:
447 137 0.02
448 21 0.00
449 9 0.00
450 157 0.02
451 7 0.00
452 32 0.00
453 3 0.00
454 3 0.00
455 2 0.00
456 2 0.00
459 1 0.00
463 1 0.00
465 353 0.05
466 461 0.06
467 101 0.01
468 149 0.02
469 453 0.06
470 283 0.04
471 456 0.06
472 496 0.06
473 873 0.11
474 1428 0.19
475 805 0.10
476 1397 0.18
477 83 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (473 bp):
CTAACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
AAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGT
TCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
TATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAATCC
ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAATGCCTTTCTT
TTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG
AAAAAAATGGGGATTAGT
Found at i:1148753 original size:12 final size:11
Alignment explanation
Indices: 1148731--1148806 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1148721 AGAGAAAGAA
*
1148731 GAGAGAGGAGG
1 GAGATAGGAGG
1148742 GATGATAGGAGG
1 GA-GATAGGAGG
*
1148754 AGAGACAGGA--
1 -GAGATAGGAGG
*
1148764 GAGATAGTA--
1 GAGATAGGAGG
1148773 GAGATAGGAGG
1 GAGATAGGAGG
1148784 GATGATAGGAGG
1 GA-GATAGGAGG
*
1148796 AGAGACAGGAG
1 -GAGATAGGAG
1148807 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1148763 original size:24 final size:24
Alignment explanation
Indices: 1148730--1148815 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1148720 AAGAGAAAGA
*
1148730 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1148754 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1148772 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1148796 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1148816 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1148782 original size:42 final size:42
Alignment explanation
Indices: 1148721--1148839 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1148711 TAGCCCTCAA
* *
1148721 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1148763 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1148805 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1148840 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1155184 original size:472 final size:472
Alignment explanation
Indices: 1153794--1175126 Score: 24524
Period size: 472 Copynumber: 45.1 Consensus size: 472
1153784 GGTTGTCATC
* * *
1153794 AACTTTGATTTTAAGAAAAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *
1153859 ATTTATTATGAGAAAAATGTGCTTATAGTGCTGAATCACAAAATGAATGAAGATTATTACTACAA
66 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
* *
1153924 TCCATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTGCTAAAATTTGGGAGG-AAAATGCCTT
131 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGC-AAAAATTGGG-GGAAAAATGCCTT
* * * *
1153988 TCTTTTGAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
194 TCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAAT
** * * *
1154053 CC--AAAAAAAAAGGGATTAGTCTAACTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATT
259 CCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATT
*
1154116 C-ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATTTCTTGTAT-C-A
324 CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTA
* * * * * *
1154178 ATGAAGGGAATGTGTTTGTAGTTCTCAATCTTGAAAGGAATGGAAATTGTTATGAGAATCGATGC
389 ATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGATGC
1154243 TTGTCTTATTTAAGGGATG
454 TTGTCTTATTTAAGGGATG
* *
1154262 AACTTTGATTTTAGGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * ** * *
1154327 GTTTATCCTAATGAGGAGAATGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCAATACTA
66 ATTTAT--T-ATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTA
* * * * ** *
1154392 GAATTCTTGTTTGGCTCATTTGAGGTACGAACTTAGACTTTAAAAAAATTAGGGGGAAAAAAGCC
128 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATT-GGGGGAAAAATGCC
** * * * * * *
1154457 TTTCTTAAGAAACCAAAGCACCAACATCGTGAATCCTAATGAGAAGACTAAGCTGATGGTTCCTA
192 TTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTA
* * * * * *
1154522 ATCGTGAAAAAAATGGGGAATAGTATTAGTATTTATTTTTGTCTTATTTAAAAGACAAACTTTGA
257 ATCCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGA
* * * *
1154587 TTCTATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCGACCCCAAAGCATCAGTGTCTCGTATCC
322 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCC
* * * * * *
1154652 TAGTGAAGGGAATGTGTTTTTGGTTCCTAATGCTGAAAAGGATGGTGACTGTTATGAGAATCGAT
387 TAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGAT
*
1154717 GCTTATCTTATTT-AGCGGATG
452 GCTTGTCTTATTTAAG-GGATG
* * * * **
1154738 AACTTTGATTTTAA-TAGAAAGAGGGCAAAGAAAGGATTTTCACCCAAAAGAAAATCATCAATAT
1 AACTTTGATTTTAAGGA-AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* *
1154802 CATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATAAAGATTATTACTACA
65 CATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGA
* * *
1154867 ATCCATGTTCGTCTCATTTGAGGCACGAAGTTAGACTTTGCAAAAATTTGGGAGG-AAAATGCCG
130 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAA-TTGGG-GGAAAAATGCCT
* ** * * *
1154931 TTCTTTTGAAACCAAAGCATCAATATCGCATACCCTAATGAGAAGACTATGTTTATGGTGCCTAA
193 TTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAA
* * * *
1154996 TCCT-AAAAAAATGGGGATTAGTCTAACTATTCATGATTGTCTTACTTAAGAGACAAACTTTGAT
258 TCCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGAT
* *
1155060 TCTATCAAAAATGGTGGAAAAAAAAGCTTTTCTT-CTGACACCAAAGCATCAATGTCTTGTATCC
323 TCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC-GACACCAAAGCATCAATGTCTTGTATCC
* * * * *
1155124 TAATGAAGGGAAGGCGTTTGTAGTTCCCAATCCTTAAAAGAATGGAGATTGTTATGAGAATCGAT
387 TAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGAT
*
1155189 GCTGGTCTTATTTAAGGGATG
452 GCTTGTCTTATTTAAGGGATG
* ** * *
1155210 AACTTTGATTTTATGGAAAATAGGGTGAAGAAAAGATTTCCACGCAAAAGAAAATCATCAGTATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * * * *
1155275 ATTTATCCTAATGAGAAGAGTTTGTTTATAGTG-TGTAATCAAAAAATGAACGAAGATCAATACT
66 ATTTAT--T-ATGAGAAGAATGTGCTTATAGTGCCG-AATCACAAAATGAATGAAGATTATTACT
* * * ** ** * *
1155339 AGAATTCTTGTTTGGCTCATTTGAGGCACGAACTTAGGTTTTAAAAAAATTGGTTGGAAAAAAGC
127 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGC
*** * * ** * * * *
1155404 CTTTCTCAAGAGACCCAGGCACCAACATCGTGTGTCCTAATGAGAAGAGTAAGCTTATGGTGCCT
191 CTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCT
* * * * * * *
1155469 AATCATGAAAAGAATGGGGAATAGTATGAGTATTTATGTTTGTCTTATTTAAAAGACAAGCTTTG
256 AATCCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTG
* * * * * *
1155534 ATTCTATTAAAAATGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAGGCATCAATGTCTTTTATG
321 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATC
* * * * * * * *
1155599 CTAATGAAAGGAATTTGTTTTTGGTTCCTAATCCTGAAAAGAATGGAGACTATTACGAGTATCAA
386 CTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGA
1155664 TGCTTGTCTTATTTAAGGGATG
451 TGCTTGTCTTATTTAAGGGATG
* *
1155686 AACTTTGATTTTAATGAAAATAGGGCAAAGAAAGGATTTCCATGCAAAAGAAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *
1155751 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATAAATGAAAATTAGTACTAGAA
66 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
*
1155816 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGTGGGAAAAATGTCTTT
131 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGCCTTT
* * * * * *
1155881 ATTTTGAAACCAAAACATCAATATTGCGTATCCAAATGAGAAGAC-AATGTTTATGGTGCCAAAT
195 CTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAA-GCTTATGGTGCCTAAT
* * *
1155945 CCTAAAAAAATATGGGGATTCA-TCTAACTATTCATGTTTGTCTTATTTAAAAGGCAAACTTTGA
259 CCTGAAAAAA-ATGGGGATT-AGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGA
* * * *
1156009 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGAGACCCCAAAGCATCAATGTCTTATATCC
322 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCC
* * * * * *
1156074 TAACGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTATTATGAGAATCGAT
387 TAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGAT
* *
1156139 GCCTGTCTTATTTAGGGGATG
452 GCTTGTCTTATTTAAGGGATG
* * *
1156160 AACTTTGATTTTAAGAAAAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * *
1156225 ATTAATTATGAGAAAAATGTGCTTATAGTGCCGTATCATAAAATGAATGAAGATTATTACTACAA
66 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
* * *
1156290 TCCATGTTTGTCTCATTTGAGGTACGAAGTTAGACTTTACAAAAATTTGGGAGG-AAAATGCCTT
131 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAA-TTGGG-GGAAAAATGCCTT
* * * * *
1156354 TCTTTTGAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACT-ATCTTTATTGTGCTTAA
194 TCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGC-TTATGGTGCCTAA
* * *
1156418 TCCT-AAAAAAATGAGGATTAGTCTAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
258 TCCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGAT
* * *
1156482 TCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAACGTCTTGTATCCA
323 TCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCT
* * * * * *
1156547 AATGAAAGAAATGTGTTTTTTGTTCCTAATCGC-GAAAAGAATGGAGACTTTTGTGAGAATCGAT
388 AATGAAGGGAATGTGTTTTTAGTTCCCAATC-CTGAAAAGAATGGAGACTGTTATGAGAATCGAT
* *
1156611 GCTTGTCTTATTTATGGGATA
452 GCTTGTCTTATTTAAGGGATG
* * * *
1156632 AACTTTGATTTTAAGAAAAATAGGGCAAAGAAAGGATTTCCTTGCAAAAGAAAATTATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *
1156697 ATTTATTATGGGAAGAATGTGCTTATAGTGCCGAATTACAAAATGAATGAAGATTTTTACTAGAA
66 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
*
1156762 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGGGGGAAAATGCCTTTC
131 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGGGGAAAAATGCCTTTC
* * * * * *
1156827 TTTTTAAACCAAAACATCAATATCGTGTATCCAAATGAGGAGACTATGTTTATGGTGCCAAATCC
196 TTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAATCC
* ** * *
1156892 TGAAAAAAATGGGGATTTGTCTAACAAATCATGTTTGTCTTATTTAAAAGGCAAACTTTGATTCT
261 TGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCT
* * * * * * * **
1156957 ATAAAAAACGGAGAAAAGAAAAGCCTTTCTTGCGACCCCAAAGCATCAGTGTCTTGTATGCTAGC
326 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAT
* *
1157022 GAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTT
391 GAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTT
1157087 GTCTTATTTAAGGGATG
456 GTCTTATTTAAGGGATG
* * *
1157104 AACTTTGATTTTCAGGAAAATAGGGCAAAGAAAAGATTTCTAGGCCAAAA-AAAATCATCAATAT
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATG-CAAAAGAAAATCATCAATAT
* * ** * *
1157168 CATTTGCCCTAATGA-AGAGACCGTGCTTATAGTGCCGAATCACAAAATAAAAGAAGATTATTAC
65 CATTT---ATTATGAGA-AGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTAC
* *
1157232 TAGAATCCATGTTTGTGTCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAAAATG
126 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATG
* * *
1157297 CCTTTGTTTTGAAGCCAAAACATCAATATCGTGTATTCTAATGAGAAGACTAAGCTTATGGTGCC
190 CCTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCC
* * * * ** *
1157362 TAATCCTGAAAAGAATGGGAAAGT-GTTTGTGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
255 TAATCCTGAAAAAAATGGG-GATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTT
* ** * * *
1157426 TGATTCTATTAAAAACAATAGAAAGAAAAGCTTTTCCTGCGACACCAAAGTATCAATGTCTTGTA
319 TGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTA
* * * * * *
1157491 TCTTAATGAAGGGGATGCGTTTGTAGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATC
384 TCCTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATC
*
1157556 AATGCTTGTCTTATTTAAGGGATG
449 GATGCTTGTCTTATTTAAGGGATG
* * *
1157580 AACTTTGATTTTAA-GAAAATAGGGCAGAGAAAAGATTTTCACGCAAAAGAAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * *
1157644 ATTTATCCTAAAGAGGAGAATGTGTTTATAGTG-CGTAATCACAAAATGAATGAAGATCAATACT
66 ATTTAT--T-ATGAGAAGAATGTGCTTATAGTGCCG-AATCACAAAATGAATGAAGATTATTACT
* * * * * * ** *
1157708 AGAATTCTTGTTTGGCTCGTTTGAGGCATGAAGTTAGACTTTAAAAAAATTGGTGGGAAAAAAGC
127 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGC
** * * * * * *
1157773 CTTTCTTAAGAGACCAAAGCACCAACATCGTGTATCCTAATAAGAAGACTAAACTTATGGTGCCT
191 CTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCT
* * * * * * * * * * *
1157838 AATCGTGGAAAGAACGGGGAATAATATGAGTATTTATTTTTGTCTTATTTAAAAGACGAACTTTG
256 AATCCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTG
* *
1157903 ATTCTATCAAAAACGGTGGAAAG-AAAGATTTTCTTGTGACACCAAAGCATCAATGTCTTGTATC
321 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATC
* * * * * * * *
1157967 CTAATGAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAGAATAGAGGCTATTGTGAGAATCGA
386 CTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGA
*
1158032 TGCTTGTCTTATTTATGGGATG
451 TGCTTGTCTTATTTAAGGGATG
* * * *
1158054 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGGATTTCCTTGCAAAATAAGATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
1158119 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
66 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
** *
1158184 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATTGAGGGAAAAAATGCCTTT
131 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTG-GGGGAAAAATGCCTTT
* ** * ** * * * *
1158249 CTTTTGAACCCAAAATGTCAATGTCGCATATCCAAATGAGAAGACTAGGTTTATGGTGCCAAATC
195 CTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAATC
* * *
1158314 CT-AAAAAAATGGGAATTAGTCTAACTATTCATATTTGTCTTATTTAAAAGACAAACTTTGATTC
260 CTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTC
** *
1158378 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAACATCTTGTATCCAAA
325 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAA
* * * * *
1158443 TGAAAGAAATGTGTTTTTTGTTCCTAATCGC-GAAAAGAATGGAGACT-ATAGTGAGAATCGATG
390 TGAAGGGAATGTGTTTTTAGTTCCCAATC-CTGAAAAGAATGGAGACTGTTA-TGAGAATCGATG
*
1158506 CTTGTCTTATTTATGGGATG
453 CTTGTCTTATTTAAGGGATG
* * * *
1158526 AACTTTGATTTTAAGGGAAATAGGGCAAAGAAAGGGTTTCCTTGCAAAAGAAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
*
1158591 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATTACAAAATGAATGAAGATTATTACTAGAA
66 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
* *
1158656 TCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGGGGGAAAATGCCTTTC
131 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGGGGAAAAATGCCTTTC
* * * * * * * *
1158721 TTTTGAATCGAAAACATCAATATCGCGTATCCTAAAGAGAAGGCTATGGTTATGGTGCTTAATCC
196 TTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAATCC
* * * * *
1158786 CGAAAAAAATGTGGATTAGTCTAACTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
261 TGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCT
* ** *
1158851 ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTATGACACCATAGCATCAATGTCTTGTATCCTAAT
326 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAT
* * * * * *
1158916 GAAGGGAATGAGTTTGTAGTTCCTAATCCTTAAAAGAATGGAGATTGTTATGAGATTCGATGCTT
391 GAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTT
1158981 GTCTTATTTAAGGGATG
456 GTCTTATTTAAGGGATG
* * * * *
1158998 AACTTTGATTTTTAGGAAAATATGTGC-AAGAAAA-A--T-CAT--------TAAT-ATC-GTTT
1 AACTTTGATTTTAAGGAAAATA-GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
** * *
1159048 GC-CCTA--ACGA-AGAGAATGTGCTTATAGTGCCGAATCACAAAATGAAAGAAGATTATTACTA
65 -CATTTATTATGAGA-AGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTA
* *
1159109 GAATCCATGTTTGTGTCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAAAATGCC
128 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGCC
* * *
1159174 TTTGTTTTGAAGCCAAAACATCAATATCGTGTATTCTAATGAGAAGACTAAGCTTATGGTGCCTA
192 TTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTA
* * * * ** *
1159239 ATCCTGAAAAGAATGGGAAAGT-GTTTGTGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
257 ATCCTGAAAAAAATGGG-GATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTG
* * * * * *
1159303 ATTCTATTAAAAACGGTAGAAAGAAAAGCTTTTCCTACGACAACAAAGTATCAATGTCTTGTATC
321 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATC
* * * * * * * *
1159368 TTAATGAAGGGGATGCGTTTGTAGTTCCCAATCTTAAAAAGAATGGAGATTGTTATGAGAATCAA
386 CTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGA
1159433 TGCTTGTCTTATTTAAGGGATG
451 TGCTTGTCTTATTTAAGGGATG
* * *
1159455 AACTTTGATTTTAA-GAAAATAGGGCAGAGAAAAGATTTTCACGCAAAAGAAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * *
1159519 ATTTATCCTAAAGAGGAGAATGTGTTTATAGTG-CGTAATCACAAAATGAATGAAGATCAATACT
66 ATTTAT--T-ATGAGAAGAATGTGCTTATAGTGCCG-AATCACAAAATGAATGAAGATTATTACT
*** * * * * ** *
1159583 AGAATTTTTGTTTGGCTCGTTTGAGGCAAGAAGTTAGACTTTAAAAAAATTGGTGGGAAAAAAGC
127 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGC
** * * * * * *
1159648 CTTTCTTGAGAGACCAAAGCACCAACATCGTGTATCCTAATAAGAAGACTAAACTTATGGTGCCT
191 CTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCT
* * * * * * * * * * * *
1159713 AATCGTGGAAAGAATGGGGAATAATATGAGTATTTATTTTTGCCTAATTTAAAAGACGAACTTTG
256 AATCCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTG
* *
1159778 ATTCTATCAAAAACGGTGGAAAGAAAAGATTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
321 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATC
* ** * * * ** * * *
1159843 CTAATGAAAGGAACATGTTTTTTGTTCCTAATCGTGAAAAGAACCGACACTATTGTTG-GAATCG
386 CTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTT-ATGAGAATCG
1159907 ATGCTTGTCTTATTTAAGGGATG
450 ATGCTTGTCTTATTTAAGGGATG
*
1159930 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGGATTTCCATGCAAAAGAAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* *
1159995 GTTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTTTTACTAGAA
66 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
* *
1160060 TCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGGGGGAAAATGCCTTTC
131 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGGGGAAAAATGCCTTTC
* * * * * * *
1160125 TTTTTAAACCAAAACATCAATATTCGTCTATCCAAATGAGATGACTATGTTTATGGTGCCAAATC
196 TTTTGAAACCAAAACATCAATA-TCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAATC
* * *
1160190 CTGAAAAAAATGGGGATTAGTCTAACTATTCATGTTTGTCTTATTTAAAAGAGAAACTTTGTTTC
260 CTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTC
* * * * * * * *
1160255 TATAAAAAAAGGTGGAAAGAAAAGCCTTTCTTGTGGCCCCAAAGCATTAATGTCTTGTATCCTAG
325 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAA
* * * * *
1160320 CGAAGGGAATGTGCTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAGTCAATGCT
390 TGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
*
1160385 TGTCTTATTTATGGGATG
455 TGTCTTATTTAAGGGATG
* ** * *
1160403 AACTTTGATTTTAAGGAAAATACGGCAAAGAAAAGATTTTTACGCAAAAGAAAATCATCAGTATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * ** * *
1160468 ATTTATCCTAATGAGGAGATTGTGTTTATAGTGCATAATCACAAAATGAATGAAGATCAATACTA
66 ATTTAT--T-ATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTA
* * * * ** *
1160533 GAATTCTTGTTTGGCTCATTTGAGACACGAACTTAGACTTTAAAAAAATTGGTGGGAAAAAAGCC
128 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGCC
** * * * * * *
1160598 TTTC-TTAAAAGACCCAAGCACCAACATCGTGTATCCTAATGAGAAGACTAAACTAATGGTGCCT
192 TTTCTTTTGAA-ACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCT
* * * * *
1160662 AA-CCGTGAAAAGAATAGGGAATAGTAC-GAGTATTTATGTTTGTCTTATTTAAAAGACAAACTT
256 AATCC-TGAAAAAAATGGGGATTAGT-CTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTT
* *
1160725 TGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGTATCAATGTCTTGTA
319 TGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTA
* * * * * * *
1160790 TCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAGAATAGAGACTATTGTGAGAATC
384 TCCTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATC
*
1160855 GATGCTTGTCTTATTTATGGGATG
449 GATGCTTGTCTTATTTAAGGGATG
* *
1160879 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGGATTTCCTTGCAAAA-AAAGATCATCAATAT
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA-ATCATCAATAT
*
1160943 CATTTATTATGAGAATAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGA
65 CATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGA
* ** *
1161008 ATCCATGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTAAAAAAATTTGGGGG-AAAATGACTT
130 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAA-TTGGGGGAAAAATGCCTT
* ** * ** * * * *
1161072 TCTTTTGAACCCAAAATGTCAATGTCGCATATCCAAATGAGAAGACTAGGTTTATGGTGCCAAAT
194 TCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAAT
* *
1161137 CCT-AAAAAAATGGGGATTAGTCTAACTATTCATATTTGTCTTATTTAAAAGACAAACTTTGATT
259 CCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATT
** *
1161201 CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAACATCTTGTATCCAA
324 CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTA
* * * * * *
1161266 ATGAAAGAAATGTGTTTTTTGTTCCTAATCGC-GAAAAGAATGGAGACT-ATAGAGAGAATCGAT
389 ATGAAGGGAATGTGTTTTTAGTTCCCAATC-CTGAAAAGAATGGAGACTGTTA-TGAGAATCGAT
*
1161329 GCTTGTCTTATTTATGGGATG
452 GCTTGTCTTATTTAAGGGATG
* * * * *
1161350 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGGGTTTGCTTGTAAAAGAAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* *
1161415 ATTTATTATGAGAAGAGTGTGCTTATAGTGCCGAATTACAAAATGAATGAAGATTATTACTAGAA
66 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
1161480 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGGGGGAAAAATGCCTTT
131 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATT-GGGGGAAAAATGCCTTT
* * * * * * * *
1161545 CTTTTGAATCGAAAACATCAATATCGCGTATCCTAAAGAGAAGGCTATGTTTATGGTGCTTAATC
195 CTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAATC
* * * * *
1161610 CGGAAAAAAATGGGGATTAGTCTAACTATTCTTGTTTGTCTTATTTAAGAGATAAACTTTGATTC
260 CTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTC
1161675 TATCAAAAACGGTGGAAAGAAAAGCTTTTCATAACGGTGGAAAGAAAAGCTTTTCTTGTGACACC
325 TATCAAAAACGGTGGAAAGAAAAGCTTTTC-T-----T----------G-----C----GACACC
* * * * *
1161740 ATAGCATCAATGTCTTGTATCCTAATGAAGGGAATGAGTTTGTAGTTCCTAATCCTTAAAAGAAT
365 AAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAAT
*
1161805 GGAGATTGTTATGA-AATCGATGCTTGTCTTATTTAAGGGATG
430 GGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATG
* *
1161847 AACTTTGATTTTTAGGAAAATAGGTGC-AAGAAAA-A--T-CAT-C-------AAT-ATC-ATTT
1 AACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
** * *
1161897 GC-CCTA--ACGA-AGAGAATGTGCTTATAGTGCCGAATCACAAAATGAAAGAAGATTATTACTA
65 -CATTTATTATGAGA-AGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTA
* *
1161958 GAATCCATGTTTGTGTCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAAAATGCC
128 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGCC
* * *
1162023 TTTGTTTTGAAGCCAAAACATCAATATCGTGTATTCTAATGAGAAGACTAAGCTTATGGTGCCTA
192 TTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTA
* * * * ** *
1162088 ATCCTGAAAAGAATGGGAAAGT-GTTTGTGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
257 ATCCTGAAAAAAATGGG-GATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTG
* * * * *
1162152 ATTCTATTAAAAACGATAGAAAGAAAAGCTTTTCCTGCGACACCAAAGTATCAATGTCTTGTATC
321 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATC
* * * * * * *
1162217 TTAATGAAGGGGATGCGTTTGTAGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAA
386 CTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGA
1162282 TGCTTGTCTTATTTAAGGGATG
451 TGCTTGTCTTATTTAAGGGATG
* * ** *
1162304 AACTCTGATTTTAA-GAAAATAGGGCAGAGAAAAGATTTTTACGCAAAAGAAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * *
1162368 ATTTATCCTAAAGAGGAGAATGTGTTTATAGTG-CGTAATCACAAAATGAATGAAGATCAATACT
66 ATTTAT--T-ATGAGAAGAATGTGCTTATAGTGCCG-AATCACAAAATGAATGAAGATTATTACT
* * * * * ** *
1162432 AGAATTCTTGTTTGGCTCATTTGAGGCATGAAGTTAGACTTTAAAAAAATTGGTGGGAAAAAAGC
127 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGC
** * * * * * *
1162497 CTTTCTTAAGAGACCAAAGCACCAACATCGTGTATCCTAATAAGAAGACTAAACTTATGGTGCCT
191 CTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCT
* * * * * ** * * * * * *
1162562 AATCGTGGAAAGAACGAGGAAGAATATGAGTATTTATTTTTGTCTTATTTAAAAGACGAACTTTG
256 AATCCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTG
* * *
1162627 ATTCTATCAAAAACGGTGGAAAGAAAAGATTTTCTTGCGACACCAAAGCATTAATGTCTTGCATC
321 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATC
* * * * * * * *
1162692 CTAATGAAGGGAATGTGTTTGTAGTTCTCAATGCTTAAAAGAATGGATATTTTTATTAGAATCGA
386 CTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGA
* *
1162757 AGCTTGTCCTATTTAAGGGATG
451 TGCTTGTCTTATTTAAGGGATG
* * * *
1162779 AACTTTGATTTTCAGGAAAATAGGGTAAAGAAAAGATTTTCATG-AAAAAAAAAT-ATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * *
1162842 ATTTGCCGTAATGA-AGAGAATGTGCTTATAGTG-CGTACCACCACTTTTATAGTGCGTAATGAA
66 ATTT---ATTATGAGA-AGAATGTGCTTATAGTGCCG-A--ATCAC----AAAAT--G-AATGAA
* * * * * * * *** *
1162905 GATCAATACTAGAATTCTTGTTTGGCTCATTTGAGGCACTAACGTAGACTTCAAAAAAATTGGTT
117 GATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-G
* * *
1162970 GGAAAAAGGCCTTTC--TT---A--AGAAC--CAA-ATCGTGTATCCTAATGAGTAGACTAAGCT
181 GGAAAAATGCCTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCT
* * * * * * * * *
1163025 TATGGTGCCTAATCATGAAAAGAATAGGGAATAGTATGAGTATTTATTTTTTTCTTATTTAAAAG
246 TATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAG
*
1163090 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAC
311 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * * * * *
1163155 GTCTTGTATCCAAATGAAAGAAATGTGTTTTTTGTTCCTAATCGC-GAAAAGAATGGAGACTATT
376 GTCTTGTATCCTAATGAAGGGAATGTGTTTTTAGTTCCCAATC-CTGAAAAGAATGGAGACTGTT
* *
1163219 GTGAGAATCGATGCTTGTCTTATTTATGGGATG
440 ATGAGAATCGATGCTTGTCTTATTTAAGGGATG
* *
1163252 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGGATTTCCTTGCAAAAGAAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * *
1163317 ATTTATTATGAGAAGAATGTGCTTATAGTGCTGAATTACAAAATGAATGAAGCTTTTTACTAGAA
66 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
1163382 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTAGGGGG-AAAATGCCTTT
131 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATT-GGGGGAAAAATGCCTTT
* * ** * *
1163446 CTTTTCAAACCAAAACATCAATATCGTGTATCCCAATGAGAAGACTGTGTTTATGGTGCCAAATC
195 CTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAATC
* ** *
1163511 CTGAAAAATATGGGGATTAGTCTAACAATTCATGTTTGTCTTATTTAAAAGGCAAACTTTGATTC
260 CTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTC
* * * * * *
1163576 TATCAAAAACAGTGGAAAGAAAAGCCTTTCTTGCGACCCCAAAGCATTAGTGTCTTGTATCCTAG
325 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAA
** * *
1163641 CAAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGATGCT
390 TGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
*
1163706 TGTCTTATTTAGGGGATG
455 TGTCTTATTTAAGGGATG
*
1163724 AACTTTGATTTTCAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAA-AAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * *
1163787 ATTTCCCTAATGA-AGAGAATATGCTTATAGTGCCGAATCACAAAATAAAAGAAGATTATTGCTA
66 ATTT--ATTATGAGA-AGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTA
* * * *
1163851 GGATCCATGTTTGTGTCATTTGAGGCATGAACTTAGACTTTGCAGAAATTGGTGGGAAAAATGCC
128 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGCC
* * * *
1163916 TTTCTTTTGAAACCAAAACATCAATATCGCGTATTCTAATGAGGAGACTGAGCTTATGGTGCCTA
192 TTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTA
* * * * * *
1163981 ATGCTGAAAAGAATGGGAAAGAGTATGTGT-AG-AAT-ATGTTTGTCTTATTTAAGAGACAAACT
257 ATCCTGAAAAAAATGGG---GATTA-GTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACT
**
1164043 TTGATTCTATCAAAAACGGAAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGT
318 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGT
* * * *
1164108 ATCCTAATGAAGGGAATGCGTTTGTAGTTCCCAATCCTGAAAAGAATGGAGATTGTTAGGAGAAT
383 ATCCTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAAT
1164173 CGATGCTTGTCTTATTTAAGGGATG
448 CGATGCTTGTCTTATTTAAGGGATG
* * * *
1164198 AACTTTGATTTTAAAGAAAATGGGGCAAAGAAAAGATTTCCATGCCAAAGAAAATCATCAATACC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * **
1164263 ATTTATTCTAATGAGGAGAATGTGTTTATAGTG-CGTAATCACAAAATGAATGGAGATCAAAACT
66 ATTTA-T-T-ATGAGAAGAATGTGCTTATAGTGCCG-AATCACAAAATGAATGAAGATTATTACT
* * ** * * *** * *
1164327 AGAATTCTTCCTTGGCCCATTTGAGGCACGAACTTAGACTTCAAAAAAATTGGTAGGAAAAAAGC
127 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGC
** * * * * * * *
1164392 CTTTCTTAAGAGACCCAAACACCAACATCGTGTGTCCTAATGAGATGACTAAGCTTTTGGTGCCT
191 CTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCT
* * * * * * * * *
1164457 AGTCATGAGAAAAATGGGGAATAGTTTGAGTATTTATGTTTTTCTTATTTAAAAGGCAAACTTTG
256 AATCCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTG
* * * *
1164522 ATTCTATAAAAAAAGGTGGAAAGGAAAGCTTTTCTTGCGAC-CCTAAAGCATCAATGGCTTGTAT
321 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACC-AAAGCATCAATGTCTTGTAT
* * * ** * *
1164586 CCTTATGAAGAGAATGTGTTTTTGGTTCCCAATTTTGAAAAGAATGGAGACTATTATTAGAATCG
385 CCTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCG
*
1164651 ATGCTTGTCTTATTTAGGGGATG
450 ATGCTTGTCTTATTTAAGGGATG
* * * * *
1164674 AACTTTGATTTTAA-TAGAAATAGAGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATTAATAT
1 AACTTTGATTTTAAGGA-AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
*
1164738 CATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTACA
65 CATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGA
1164803 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGTGGGAAAAATGCCTT
130 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGCCTT
* * * * *
1164868 TCTTTTGAAACTAAAACATCAATATCGCGTATCC-AATTGAGAAGACTATGTTTATGGTGCCAAA
194 TCTTTTGAAACCAAAACATCAATATCGTGTATCCTAA-TGAGAAGACTAAGCTTATGGTGCCTAA
* * * * *
1164932 TCCTAAAAAAAAATGGGGATTCGTCTAACTATTCATGTTTGTCATATTTAAAAGGCAAACTTTGA
258 TCCT-GAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGA
* * *
1164997 TTCTATCAAAAA-GGTGGAAAGAAAAGCTTTTCTTGCAACCCCAAAGCATCAATGTCTTATATCC
322 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCC
* * * * * *
1165061 TAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTATTATGAGAATTGAT
387 TAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGAT
* *
1165126 GCCTGTCTTATTTAGGGGATG
452 GCTTGTCTTATTTAAGGGATG
* ** * *
1165147 AACTTTGATTTTAAGAAAAATAGGGCAAAGAAGGGATTTTCATGCAAAAGAAAATCATCAATATA
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *
1165212 ATTTATTATGAGAAGAATGTGCTTACAGTGCCGAATCACAAAATAAATGAAGATTATTACTACAA
66 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
1165277 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTTGGGAGG-AAAATGCCTT
131 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAA-TTGGG-GGAAAAATGCCTT
* ** * * *
1165341 TCTTTTGAAACCAAAGCATCAATATCACGTATCCTAATGAGAAGACTATG-TTATTGTGTCTAAT
194 TCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAAT
* * * * *
1165405 CCT-AAAAAAAAGGAGATTAGTCTAACTATTCATGTTTGTCTTATTCAAGAGACAAACTTTGATT
259 CCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATT
* * * *
1165469 CAATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATTTCTTATAT-C-A
324 CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTA
* * *
1165532 ATGAAGGGAATGTGTTTGTAGTTCCCAATCCTGAAAAGAATGGAGATTGTTATGAGAATCTATGC
389 ATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGATGC
1165597 TTGTCTTATTTAAGGGATG
454 TTGTCTTATTTAAGGGATG
* * * *
1165616 AACTTTGATTTTAGGGAAAACAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAGTATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * *
1165681 GTTTATCCTAATGAGGAGAATGTGTTTATAGTGCAGAATCACAAAATGAATGAAGATAAATACTA
66 ATTTAT--T-ATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTA
* * * * * * **
1165746 GAATTCTTGTTTGGCTCTTTTGAGGTACGAACTTAGAGTTTAAAAAAATTGGGGGGAAAAA-GCC
128 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATT-GGGGGAAAAATGCC
** * * * *
1165810 TTTCTTAAGAAACCAAAGCACCAACATTGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTA
192 TTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTA
* * * * * * * * *
1165875 ATCGTGAAAAGAATGGGGAATAGTATGAGTATTTATTTTTGTCTTTTTTAAAAGATAAACTTTGA
257 ATCCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGA
1165940 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCC
322 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCC
* * * * * * *
1166005 TAATGAAAGGAACGTGTTTTTTGTTCCTAATCGTGAAAAGAATGGAGACTATTGTGAGAATCGAT
387 TAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGAT
1166070 GCTTGTCTTATTTAAGGGATG
452 GCTTGTCTTATTTAAGGGATG
* *
1166091 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGGATTTCCATGCAAAAGAAAATTATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* *
1166156 ATTTATTATGAGAAGAATGTGCTTATAGTTCCGAATCACAAAATGAATGAAGATTTTTACTAGAA
66 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
* *
1166221 TCCATGTTTGTCGCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGTGAGAAAAATGCCTTT
131 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGCCTTT
* * * * **
1166286 CTTTTGAAACCAAAACATCAATACTCGTGTACCCAAATGAGAAGACTACGTTTATGGTG-AAAAT
195 CTTTTGAAACCAAAACATCAATA-TCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAAT
* * * *
1166350 CCT-AAAAAAATGAGGATTAGTCTAACTATTCATGTTTGTCTTATTTAAAAGGCAAACTTTGTTT
259 CCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATT
* *
1166414 CTATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCGACCCCAAAGCATCAATGTCTTGTATCCTA
324 CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTA
** *
1166479 GCGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGATGC
389 ATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGATGC
1166544 TTGTCTTATTT-AGGGAATG
454 TTGTCTTATTTAAGGG-ATG
* * *
1166563 AACTTTGATTTTAAGGAAAATATGGTAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * **
1166628 ATTTATCCTAATGAGGAGATTGGGTTTATAGTG-CGTAATCACAAAATGAATGAAGATCAACACT
66 ATTTAT--T-ATGAGAAGAATGTGCTTATAGTGCCG-AATCACAAAATGAATGAAGATTATTACT
* * * ** *
1166692 AGAATTCTTGTTT-TGCTCATTTGAGGCATGAACTTAGACTTTAAAAAAATTGGTGGGAAAAAAG
127 AGAATCCATGTTTGT-CTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATG
*** * * * * * * *
1166756 CCTTTCTAAAGAGACCAAAGCACCAACATCGTGTATCCTAATGAGAAGACTAAACTAATAGTGCC
190 CCTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCC
* ** * *
1166821 TAA-CCGTGAAAAAAATGGGGAATAGGATGAGTATTTATGTTTGTCTTATTTAAAAGACAAACTT
255 TAATCC-TGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTT
* * * * *
1166885 TGATTCTATCAAAGACGGTGAAAAGAAAAGCTTTTTTTGCGACACCAAAGTACCAATGTCTTGTA
319 TGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTA
* * * * ** * *
1166950 TCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAGAATAAAGACTATTGTGAGAATC
384 TCCTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATC
* *
1167015 GATGTTTGTCTTATTTAGGGGATG
449 GATGCTTGTCTTATTTAAGGGATG
* ** * *
1167039 AACTTTGATTTTAAGGAAAATATGGCAAAGAAGGGATTTTCATGCGAAAGAAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *
1167104 AATTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAACATTATTACTACAA
66 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
* *
1167169 TCTAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTAGGGGGAAAAATGCCTTT
131 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATT-GGGGGAAAAATGCCTTT
* ** * *
1167234 CTTTCGAAACCAAAACATCAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA-C
195 CTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAATC
* * * *
1167298 CTGAAAAAAATGGAGATTAGTCTAACTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTC
260 CTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTC
* * *
1167363 TATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAGTG-CTTGTATCCTAA
325 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAA
* * * * * * *
1167427 TGAAGGGAATGAGTTTGTAGTTCCTAATCCTTAAATGAATGGAGATTGTTATGAGAATTGATGCT
390 TGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
1167492 TGTCTTATTTAAGGGATG
455 TGTCTTATTTAAGGGATG
* *
1167510 AACTTTGATTTTCAA-GAAAATAGGGCGAAGAAAAGATTTCCATGCAAGA-AAAATCATCAATAT
1 AACTTTGATTTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* * * * * *
1167573 CATTTGCCCTAATGATG-AGAATCTGCTTATAGTGCTGAATCACAAAAAGAAAGAAGATTATTAC
65 CATTT---ATTATGA-GAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTAC
* *
1167637 TAGAATCCATGTTTGTGTCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAAAATG
126 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATG
* * * * *
1167702 CCTTTGTTTTGAAGCTAAAACATCAATATCATGTATTCTAATGAGAAGACTAAGCTTATGGTGCC
190 CCTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCC
* * * * **
1167767 TAATCCTGAAAAGAATGGGAAAGT-GTTTGTGTATTCATGTTTGTCTTATTTAAAAGACAAACTT
255 TAATCCTGAAAAAAATGGG-GATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTT
* *
1167831 TGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACTAAAGCATCAATGTCTTGTA
319 TGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTA
* * * * * * *
1167896 TCCTAATGAAGGGAATGCGCTTGTAGTTCCCAATCTTGAAAAGAATGGAAATTGTTTTGAGAATC
384 TCCTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATC
1167961 GATGCTTGTCTTATTTAAGGGATG
449 GATGCTTGTCTTATTTAAGGGATG
* * * *
1167985 AACTTTGATTTCAA-GAAAATA-GGCAGAGAAAAGATTTCCACGCAAAAGAAAATCTTCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * *
1168048 ATTTATCCTAAAGAGGAGAATGTGTTTATAGTG-CGTAATCACAAAATAAATGAAGATCAATACT
66 ATTTAT--T-ATGAGAAGAATGTGCTTATAGTGCCG-AATCACAAAATGAATGAAGATTATTACT
* * * * * ** *
1168112 AGAATTCTTGTTTGGCTCGTTTGAGGCACGAACTTAGATTTTAAAAAAATTGGTGGGAAAAAAGC
127 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGC
*** *** * * * * * *
1168177 CTTTCTAAAGGGGCCAAAGCACCAACATCGTGTATCCTAATAAGAAGACTAAACTTATAGTGCCT
191 CTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCT
* * * * * * * * * *
1168242 AATCGTGGAAAGAATGGGGAATAGTATGAGTATTTATTTTTGTCTTATTTGAAAGTCAAACTTTG
256 AATCCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTG
* ** *
1168307 ATTCTATAAAAAACGGTGGAAAGAAAATATTTTCTTGCAACACCAAAGCATCAATGTCTTGTATC
321 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATC
* * * * *
1168372 CTAATGAAGGGAATGCGTTTGTAGTTCCCAATCCTGAAAAGAATGGAGATTGTTATAAGAATTGA
386 CTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGA
*
1168437 AGCTTGTCTTATTTAAGGGATG
451 TGCTTGTCTTATTTAAGGGATG
* * *
1168459 AACTTTGATTTTCAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAA-AGAA-CATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* ** * *
1168522 ATTTGCCCA-AATGA-AGAGAATGTGCTTATAGTGCATAATCACAAAATGAATGAAGATCAATAC
66 ATTT----ATTATGAGA-AGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTAC
* * * * * *** *
1168585 TAGAATTCTTGTTTGGCTCATTTGAGGCACGAACGTAGGCTTCAAAAAAATTGGTGGGAAAAAAA
126 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGG-AAAAAT
** *
1168650 GCCTTTCTTAAG-AACC--AACATC-A-A----GTATCCTAATGAGTAGACTAAGCTTATGGTGC
189 GCCTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGC
* * * * * * * *
1168706 CTAATCAT-AAAAAGAATAGGCAATAGTATGAGTATTTATTTTTGTCTTATTTAAAAGACAAACT
254 CTAATCCTGAAAAA-AATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACT
** *
1168770 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAACGTCTTGT
318 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGT
* * * *** * * * * *
1168835 ATCCAAATGAAAGAAATGTGTTTTTTCCTCCTAATCAC-GAAAATAGTGGAGACTATTGTGAGAA
383 ATCCTAATGAAGGGAATGTGTTTTTAGTTCCCAATC-CTGAAAAGAATGGAGACTGTTATGAGAA
*
1168899 TCGATGCTTGTCTTATTTATGGGATG
447 TCGATGCTTGTCTTATTTAAGGGATG
*
1168925 AACTTTGATTTTAAGGAAAATAGGGCAAA-AAAAGGATTTCCTTGCAAAAGAAAATCATCAATAT
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA-GATTTCCATGCAAAAGAAAATCATCAATAT
** * *
1168989 CATTTATTATGAGAAGAATGTGCTTATAGTGTTGAATTACAAAATGAATGAAGATTTTTACTAGA
65 CATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGA
*** *
1169054 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTAAAAAAAATTGGGGGTAAAATTGCCTT
130 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGGGG-AAAAATGCCTT
* * * * *
1169119 TCTTTTGAAACCAAAACATCAATATCATGTATCCAAATGAGAAGACTATGTTTATGGTGCCAAAT
194 TCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAAT
* ** * *
1169184 CTTGAAAAAAATGGGGATTAGTCTAACAATTCTTGTTTGTCTTATTTAAAAGGCAAACTTTGATT
259 CCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATT
* * * * *
1169249 TTATCGAAAACGGTGGAAAGAAAAGCCTTTCTTGCGACCCCAAAGCATCAGTGTCTTGTATCCTA
324 CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTA
** * * * *
1169314 GCGAAGGGAATGTGTTTTTGGTTCCCAATCCTAAAAAAAATGGAGACTGTTATGAGAATCAATGC
389 ATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGATGC
*
1169379 TTGTCTTATTTAGGGGATG
454 TTGTCTTATTTAAGGGATG
* * *
1169398 AACTTTGATTTTAAGGAAAATACGGCAAAGAAAAGATTTTCACGCAAAA-AAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * *
1169462 ATTTATCTTAATGAGGAGATTGTGTTTATAGTG-CGTAATCACAAAATAAATGAAGATCAATACT
66 ATTTA--TT-ATGAGAAGAATGTGCTTATAGTGCCG-AATCACAAAATGAATGAAGATTATTACT
* * * * * * ** **
1169526 AGAATTCTTGTTTGGCTCATTTAAGGAACAAACTTAGACTTTAAAAAAATTGGTGGGAAAAAAAC
127 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGC
*** * * * * * *
1169591 CTTTCTGAAGAGACC-AAGCACCAACATCGTGTATCCTAATGAGAAGACTAAACTAATGGTGCCT
191 CTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCT
* * * * * *
1169655 AA-CCGTGAAAAGAATGGTG-TATACTATGAGTATTTATGTTTGTCTTATTTAAAAGACAAACTT
256 AATCC-TGAAAAAAATGGGGAT-TAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTT
* * * * * *
1169718 TGATTCTATCAAAAACGGTGAAAAGAAATGCTTTTCTAGCGACACTAAAGTATCAATTTCTTGTA
319 TGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTA
* * * * * *
1169783 TCCTAATGAAAGGAATGTGTTTTTAGTTCCTAATCATGAAAAGAATAGAGACTATTGTGAGAATC
384 TCCTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATC
*
1169848 GATGCTTGTCTTATTTATGGGATG
449 GATGCTTGTCTTATTTAAGGGATG
* * * *
1169872 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAATGATTTCCTTGCAAAAGAAGATCAGCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
*
1169937 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATT-TT-GTAGAA
66 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
* * * ** *
1170000 TCCATGTTTGTCTTACTTGAGGCACGAAGTTAGACTTTAAAAAAATTGGGGGGGGAAAATGCCTT
131 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATT--GGGGGAAAAATGCCTT
* * * * * * *
1170065 TCTTTTGAACCCAAAACGTCAATATCGCGTATCC-AAAGAGAAGACTACGTTTATGGTGCCAAAT
194 TCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAAT
* * * *
1170129 CCT-AAAAAAATGGGGATTAGTCTAACTATTCATGTTTATCTTATTTAAAAGAAAAAATTTGATT
259 CCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATT
* * * **
1170193 CTATCAAAAATGGTGGAAAGAAAAGCCTTTCTTGCGAC-CCGAAGGCATCGGTGTCTTGTATCCT
324 CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACC-AAAGCATCAATGTCTTGTATCCT
* *
1170257 AGA-GAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATCGAT
388 A-ATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGAT
* *
1170321 GCTTGTCTTATATAGGGGATG
452 GCTTGTCTTATTTAAGGGATG
* ** *
1170342 TACTTTGATTTTAAGGAAAATAGGGCAAAGAAGGGATTTTCATGCGAAAA-AAAATCATCAATAT
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATAT
* * *
1170406 CATTTATTATGAGAAGAATGTGTTTATAGTGCCGAATCACAAAATGAATGAAGATTTTTACTACA
65 CATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGA
* *
1170471 ATCTAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGGAGGAAAAATGCCTT
130 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGG-GGAAAAATGCCTT
* *
1170536 TCTTTTGAAACCAAAACATCAATATCGCGTATTCTAATGAGAAGACTAAGCTTATGGTGCCTAAT
194 TCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAAT
* * ** * ** *
1170601 CCTGAAAAGAATGGGAAAGAGTATGTGTATTCATGTTTGTCTTATTTAAGAAGAGACAAACTTTA
259 CCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTT-A-AA-AGACAAACTTTG
* *
1170666 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCGTCAATGTCTTGTATC
321 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATC
* * * * * * *
1170731 CTAATGAAGGGAATGAGTTTGTAGTTCCTAATCCTTAAAAGAATGGAGATTTTTATGAGAATCAA
386 CTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGA
1170796 TGCTTGTCTTATTTAAGGGATG
451 TGCTTGTCTTATTTAAGGGATG
* * * *
1170818 AACTTTGATTTTCAGGAAAATAGGGTAAAGAAAAGATTTCCATGC-AAACAAAATGATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
*
1170882 ATTT-TCCCTAATGA-AGAGAATGTGCTTATAGTGCCGAATCACAAAATGAAAGAAGATTATTAC
66 ATTTAT---T-ATGAGA-AGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTAC
*
1170945 TAGAATCCATGTTTG--TCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGGGGGAAAAATG
126 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATT-GGGGGAAAAATG
* * * *
1171008 CCTTTGTTTTGAAGCCAAAACATCAATATCCTGTATTCTAATGAGAAGACTAAGCTTATGGTGCC
190 CCTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCC
* * * * **
1171073 TAATCCTGAAAAGAATGGGAAAGT-GTTTGTGTATTCATGTTTGTCTTATTTAAAAGACAAACTT
255 TAATCCTGAAAAAAATGGG-GATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTT
* * * *
1171137 TGATTCTATAAAAAACGGTAGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCTTATA
319 TGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTA
** * * * * *
1171202 TCCTAATGAAGGGAATGCATTTGTAGTTCCCAATCTTGAAAAGAATGGAGATTGTTTTGAGAATT
384 TCCTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATC
1171267 GATGCTTGTCTTATTTAAGGGATG
449 GATGCTTGTCTTATTTAAGGGATG
** * * *
1171291 AACTTTGATTTTAA-GATTATAGGGCAGAGAAAAGATTTCCACGCAAAAGAAAATCATAAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * *
1171355 ATTTATCCTA-AAGAAGAGAATGTGTTTATAGTG-CGTATCACAAAATGAATGAAGATCAATACT
66 ATTTAT--TATGAG-A-AGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACT
* * * * ** ** *
1171418 AGAATTCTTGTTTGGCTCGTTTGAGGTGCGAACTTAGACTTTAAAAAAATTGGTGGGAAAAAAGC
127 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGC
** * * * * * * *
1171483 CTTTCTTAAGAGACCAAAGCACCAATATCGTGTATCCTAATAAGAAGACAAAACTTAAGGTGCCT
191 CTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCT
* * * * * * * *
1171548 AATCGTGGAAAGAATGGGGAATAGTATGAGTATTTATTTTTGTCTTATTTAAAAGACAAACTTTG
256 AATCCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTG
* *
1171613 ATTCTATCAAAAATGGTGGAAAGAAAAGATTTTCTTGCGACACCAAAGCATCAATGTCTTGTATC
321 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATC
* * * * *
1171678 GTAATGAAGGGAATGCGTTTGTAGTTCCCAATCCTGAAAAGAATGGAGATTGTTATGAGAATTGA
386 CTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGA
* *
1171743 AGCTTGTCTTATTTAGGGGATG
451 TGCTTGTCTTATTTAAGGGATG
* * *
1171765 AACTTTGATTTTCAGGAAAAGAGGGCAAAGGAAAGATTTCCATGCAAAAG-AAA-CATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * *
1171828 ATTTGCCCTAATGA-AGAGAATGTGCTTATAATG-CGTAATCACAAAATGAATGAAGATCAATAC
66 ATTT---ATTATGAGA-AGAATGTGCTTATAGTGCCG-AATCACAAAATGAATGAAGATTATTAC
* * * * *** *
1171891 TAGAATTCTTGTTTGGCTCATTTGGGGCACGAACTTAGACTTAAAAAAAATTGGTGGGAAAAAAG
126 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATG
* * *
1171956 -CTTTC--TT---A--AGAAC--CAACATCGTGTATCCTAATGAGTAGACTAAGCTTATGGTGCC
190 CCTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCC
** * * * * * * *
1172011 TAATTATGAAAAGAATAGGGAATAGTGTGAGTATTTATTTTTGTCTTATTTAAAAGACAAACTTT
255 TAATCCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTT
*
1172076 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTAT
320 GATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTAT
* * * * * *
1172141 CCTATTGCAGGGAATACGT-TTTTTTGATCCCAATCTTGAAAAGAATGGAGACTATTATGAGAAT
385 CCTAATGAAGGGAAT--GTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAAT
1172205 CGATGCTTGTCTTATTTAAGGGATG
448 CGATGCTTGTCTTATTTAAGGGATG
* * *
1172230 AACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCACGCAAAA-AAAA-AATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * *
1172293 ATTTATCCTATTGAGAAGAATGTGTTTATTGTG-CGTAATCACAAAATGAATGAAGATAAATACC
66 ATTTAT--TA-TGAGAAGAATGTGCTTATAGTGCCG-AATCACAAAATGAATGAAGATTATTACT
* * * *** *
1172357 AGAATTCTTGTTTGTCCCATTTGAGGCACGAACTTAGACTTAAAAAAAATTGGTGGGAAAAAAGC
127 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGC
* * *
1172422 CTTTC--TT---A--AGAAC-T-AACATCGTGTATCCTAATGAGTAGAC-AAGCTTATGGTGCCT
191 CTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCT
** * * * * * * * *
1172477 AATTATGAAAAGAATAGGGAATAGTATGAGCATTTATTTTTGTCTTATTTAAAAGACAAACTTTG
256 AATCCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTG
* * *
1172542 ATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGAATCAATGTCTTGCATC
321 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATC
* * * * * *
1172607 CTATTGCAGGGAATACGT-TTTTTTGATCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATC
386 CTAATGAAGGGAAT--GTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATC
1172671 GATGCTTGTCTTATTTAAGGGATG
449 GATGCTTGTCTTATTTAAGGGATG
* *
1172695 AACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCACGCAAAA-AAAA--ATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * *
1172757 ATTTATCCTATTGAGAAGAATGTGTTTATTGTG-CGTAATCACAAAATGAATGAAGATAAATACC
66 ATTTAT--TA-TGAGAAGAATGTGCTTATAGTGCCG-AATCACAAAATGAATGAAGATTATTACT
* * * *** *
1172821 AGAATTCTTGTTTGTCCCATTTGAGGCACGAACTTAGACTTAAAAAAAATTGGTGGGAAAAAAGC
127 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGC
* * *
1172886 CTTTC--TT---A--AGAAC-T-AACATCGTGTATCCTAATGAGTAGAC-AAGCTTATGGTGCCT
191 CTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCT
** * * * * * * * *
1172941 AATTATGAAAAGAATAGGGAATAGTATGAGCATTTATTTTTGTCTTATTTAAAAGACAAACTTTG
256 AATCCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTG
* *
1173006 ATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACATCAAAGCATCAATGTCTTGTATC
321 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATC
** * * * * * ** * *
1173071 GAAATGAAAGAAATGTCTTTTTTGTTCCTAATCAAGAAAAGAATGGAGACTATTGTGAGAATCGA
386 CTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGA
* *
1173136 TGCTTGTCTTATTTATGGGACG
451 TGCTTGTCTTATTTAAGGGATG
* *
1173158 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAAAATTCCATGCAAAAGAAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* ** * * * * *
1173223 TTTTATCTTAAAAAGGAGAATGTGCTTATCA-TGCCTAATCATAAATTGGAA-GAAGATCATTAC
66 ATTTA--TT-ATGAGAAGAATGTGCTTAT-AGTGCCGAATCACAAAAT-GAATGAAGATTATTAC
* * * **
1173286 TAGAATCCATCTTTGTCTCATTTGCA-GTACGAACTTAGACTTTGCAAAAATT-AGCAAGAAAAT
126 TAGAATCCATGTTTGTCTCATTTG-AGGCACGAACTTAGACTTTGCAAAAATTGGGGGA-AAAAT
* ** * * * *
1173349 GCCTTTCTTGTGAAACCAAAACATCAATATCGCATATCTTAATGAGAAGACTATGTTTATCGCT-
189 GCCTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTAT-GGTG
* ** * * * *
1173413 CCTAATCCTGAAAAGAATGGGGATTAGT-TGAACAATTTATGCTTGGCTTATTTAATAAAAGGCA
253 CCTAATCCTGAAAAAAATGGGGATTAGTCT-AAGTATTCATGTTTGTCTTA-TT--TAAAAGACA
* *
1173477 AACTTTGATTCTATCGAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGAATCAATGTC
314 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * * * * *
1173542 TTGCATCCTATTGCAGGGAATACGT-TTTTTTGATCCCAATCTTGAAAAGAATGGAGACTATTAT
379 TTGTATCCTAATGAAGGGAAT--GTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTAT
* *
1173606 GAGAATTGATGCTTTTCTTATTTAAGGGATG
442 GAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * *
1173637 AACTTTGATTTTAAGAAAAATAAGGTAAAGAAAAGATTTCCACGCAAAAAAAAAACATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * * *
1173702 ATTTATCCTGTTGAGGAGAATGTGTTTATTGTG-CGTAATCACAAAATGAATGAAGATAAATACC
66 ATTTAT--T-ATGAGAAGAATGTGCTTATAGTGCCG-AATCACAAAATGAATGAAGATTATTACT
* * * * *
1173766 AGAATTCTTGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTAGTAGGGAAAAA-G
127 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATT-G-GGGGAAAAATG
** * * * * * *
1173830 CCTTTCTTAAGTAACCAAAGC-TCCAATATCATGTATCTTAATGAGAAGACAAAGTTTATGGTGC
190 CCTTTCTTTTGAAACCAAAACAT-CAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGC
* * * ** *
1173894 CTAATCGTGAAAATAATAGGGAAGAGTACGT--GTATTCATGTTTGTCTTATTTAATAGACAAAC
254 CTAATCCTGAAAAAAATGGGGATTAGT-C-TAAGTATTCATGTTTGTCTTATTTAAAAGACAAAC
* * * * *
1173957 TTTGATTCGATGAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGATACCAAAGCATCAATGTCTTG
317 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTG
* * * * * * **
1174022 TATCTTAATGAATGGAATGTGTTTGTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACAAGAA
382 TATCCTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAA
1174087 TCGATGCTTGTCTTATTTAAGGGATG
447 TCGATGCTTGTCTTATTTAAGGGATG
*
1174113 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATTAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *
1174177 ATTTGCCCTAATGA-AGAGAATGTGCTTATAGTGCCGAATCACAAAATGAAAGAAGATTATTACT
66 ATTT---ATTATGAGA-AGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACT
* * *
1174241 AGAATCCATGTTTATGTCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAAAATGC
127 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGG-GGGAAAAATGC
* * *
1174306 CTTTCTTTTGAAAGCAAAACATCAATATCGCGTATTCTAATGAGAAGACTAAGCTTATGGTGCCT
191 CTTTCTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCT
* * * ** * ** * *
1174371 AATCTTG-AAAGAATGGGAAAGAGTATGTGTATTCATGTTTGTCATATTTAAGAGACAAACTTTG
256 AATCCTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTG
* *
1174435 ATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCTTGTATC
321 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATC
* * * * **
1174500 CTAATGAAAGGAATGTGTTTTTGGTTCCTAATCCTGAAAAGAATGGAGACTATTGCGAGAATCGA
386 CTAATGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGA
1174565 TGCTTGTCTTATTTAAGGGATG
451 TGCTTGTCTTATTTAAGGGATG
* *
1174587 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *
1174652 ATTTATTATAAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTGCTACAA
66 ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
* *
1174717 TCCATATTTGTCTCATTTGAGGTACGAACTTAGACTTTGCAAAAATTGGGGGGAAAAATGCCTTT
131 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATT-GGGGGAAAAATGCCTTT
* * * * *
1174782 CTTTTGAAACCAAAACATAAATATCGCGTATCCTATTGAGAAGACTATGTTTATGGTGCCTAATC
195 CTTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAATC
* * * *
1174847 CT-TAAAAAATGGGGATTAGTCTAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAATTC
260 CTGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTC
* *
1174911 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAGAGCATCAATGTCTTGTATCCTAA
325 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAA
* * * * * * * * *
1174976 TGATGGAAATATGTTTGTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGTT
390 TGAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
1175041 TGTCTTATTTAAGGGATG
455 TGTCTTATTTAAGGGATG
1175059 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATC
1 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
1175123 ATTT
66 ATTT
1175127 GCCCTAATCG
Statistics
Matches: 17880, Mismatches: 2568, Indels: 831
0.84 0.12 0.04
Matches are distributed among these distances:
455 6 0.00
456 204 0.01
457 307 0.02
458 6 0.00
459 6 0.00
460 7 0.00
461 1 0.00
462 14 0.00
463 165 0.01
464 530 0.03
465 625 0.03
466 388 0.02
467 18 0.00
468 90 0.01
469 150 0.01
470 458 0.03
471 1065 0.06
472 3189 0.18
473 2765 0.15
474 2553 0.14
475 2076 0.12
476 2042 0.11
477 282 0.02
478 151 0.01
479 208 0.01
480 93 0.01
481 250 0.01
482 6 0.00
483 85 0.00
484 4 0.00
485 3 0.00
489 1 0.00
493 2 0.00
494 2 0.00
497 57 0.00
498 69 0.00
499 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (472 bp):
AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
ATTTATTATGAGAAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTACTAGAA
TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGGGGAAAAATGCCTTTC
TTTTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAATCC
TGAAAAAAATGGGGATTAGTCTAAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCT
ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAAT
GAAGGGAATGTGTTTTTAGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTT
GTCTTATTTAAGGGATG
Found at i:1158685 original size:156 final size:154
Alignment explanation
Indices: 1155635--1158686 Score: 459
Period size: 159 Copynumber: 19.4 Consensus size: 154
1155625 CCTAATCCTG
* * * * * * * *
1155635 AAAAGAATGGAGACTATTACGAGTATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
1 AAAAGAATGAAGATTATTACTAGAATCCATGTTTGTCTTATTT-AGGCACGAACTTTGATTTTAA
* * * *
1155700 TGAAAATAGGGCAAAGAAAGGATTTCCATGCAAAAGAAAATCATCAATATCATT-TATTATGAGA
65 -GAAAATAGGGCAAAGAAAGGCTTTCCTTGCAAAACAAAATCATCAATATCATTCTATAATGAGA
1155764 AGAATGTGCTTATAGTGCCGAATCAC
129 AGAATGTGCTTATAGTGCCGAATCAC
* * * * *
1155790 AAAATAAATGAAAATTAGTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTG
1 AAAA-GAATGAAGATTATTACTAGAATCCATGTTTGTCTTATTT-AGGCACGAACTTTGA-TTT-
* * * * * * ** * * *
1155855 CAA-AAATTGGTGGGAAA-AATGTCTTTATTTTG-AAACCAAAA-CATCAATATTGCGTATCCA-
62 TAAGAAAATAG-GGCAAAGAAAGGCTTT-CCTTGCAAAACAAAATCATCAATA-T-CAT-TCTAT
* *
1155915 AATGAGAAGACAATGT--TTATGGTGCCAAATC-C
122 AATGAGAAG--AATGTGCTTATAGTGCCGAATCAC
* ** *
1155947 TAAAAAAATATGGGGATTCA-T-CTA-ACTATTCATGTTTGTCTTATTTAAAAGGCA--AACTTT
1 --AAAAGA-ATGAAGATT-ATTACTAGA--ATCCATGTTTGTCTTATTT---AGGCACGAACTTT
* * * * ** * * *
1156007 GATTCTATCA-AAAAT-GGTGGAAAGAAAAGCTTTTCTTG-AGACCCCAAAGCATCAATGTCTTA
57 GATT-T-TAAGAAAATAGG-GCAAAGAAAGGCTTTCCTTGCA-AAACAAAATCATCAATATC--A
* * * * * * * **
1156069 TATC-CTAACGA-AGAGAATGTGTTTTTGGTTCCCAATCTTG
116 T-TCTATAATGAGA-AGAATGTGCTTATAGTGCCGAATC-AC
* * ** * *
1156109 AAAAGAAT-AGAGACTATTA-TGAGAATCGATGCCTGTCTTATTTAGGGGATGAACTTTGATTTT
1 AAAAGAATGA-AGATTATTACT-AGAATCCATGTTTGTCTTATTTA-GGCACGAACTTTGATTTT
* * * * * *
1156172 AAGAAAAATAGGGCAAAGAAAGGATTTTCATGCAAAAGAAAATCATCAATATCATT-AATTATGA
63 AAG-AAAATAGGGCAAAGAAAGGCTTTCCTTGCAAAACAAAATCATCAATATCATTCTATAATGA
* * *
1156236 GAAAAATGTGCTTATAGTGCCGTATCAT
127 GAAGAATGTGCTTATAGTGCCGAATCAC
* * * * * *
1156264 AAAATGAATGAAGATTATTACTACAATCCATGTTTGTCTCATTTGAGGTACGAAGTTAGACTTTA
1 AAAA-GAATGAAGATTATTACTAGAATCCATGTTTGTCTTATTT-AGGCACGAACTTTGATTTTA
* * * * * * * *
1156329 CA-AAAATTTGGG-AGGAA-AATGCCTTTCTTTTG--AAACCAAAGCATCAATATCGCGTATC-C
64 -AGAAAA-TAGGGCA--AAGAAAGGCTTTC-CTTGCAAAACAAAATCATCAATAT--CAT-TCTA
* * * **
1156388 TAATGAGAAGACTAT-CTTTATTGTGCTTAATC-C
121 TAATGAGAAGAATGTGC-TTATAGTGCCGAATCAC
* * * * *
1156421 TAAAAAAATGAGGATTAGT-CTA-ACTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATT
1 -AAAAGAATGAAGATTATTACTAGA--ATCCATGTTTGTCTTATTT-AG-GCACGAACTTTGATT
* * * * * * * ** *
1156483 CTATCAA-AAACT-GTGG-AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAACGTC-TTGTAT
61 -T-T-AAGAAAATAG-GGCAAAGAAAGGCTTTCCTTGCAAAACAAAATCATCAATATCATTCTAT
* * * * * *
1156544 CCAAATGA-AAGAAATGTGTTTTTTGTTCCTAATCGC
122 ---AATGAGAAG-AATGTGCTTATAGTGCCGAATCAC
* * * * * **
1156580 GAAAAGAATGGAGACTT-TT-GTGAGAATCGATGCTTGTCTTATTTATGGGATAAACTTTGATTT
1 -AAAAGAATGAAGA-TTATTACT-AGAATCCATGTTTGTCTTATTTA-GGCACGAACTTTGATTT
* * * *
1156643 TAAGAAAAATAGGGCAAAGAAAGGATTTCCTTGCAAAAGAAAATTATCAATATCATT-TATTATG
62 TAAG-AAAATAGGGCAAAGAAAGGCTTTCCTTGCAAAACAAAATCATCAATATCATTCTATAATG
* *
1156707 GGAAGAATGTGCTTATAGTGCCGAATTAC
126 AGAAGAATGTGCTTATAGTGCCGAATCAC
* * *
1156736 AAAATGAATGAAGATTTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTG
1 AAAA-GAATGAAGATTATTACTAGAATCCATGTTTGTCTTATTT-AGGCACGAACTTTGA-TTT-
* * * ** * * * ** * * *
1156801 CAA-AAATTGGGGGGAA-AATGCCTTTCTTTTTAAACCAAAA-CATCAATATC-GTGTATCCAAA
62 TAAGAAAATAGGGCAAAGAAAGGCTTTCCTTGCAAAACAAAATCATCAATATCATTCTAT---AA
* * * * * *
1156862 TGAGGAGACTATGTTTATGGTGCCAAATC-C
124 TGAGAAGAATGTGCTTATAGTGCCGAATCAC
* ** *
1156892 TGAAAAAAATGGGGATT-TGT-CTAACAAAT-CATGTTTGTCTTATTTAAAAGGCA--AACTTTG
1 --AAAAGAATGAAGATTAT-TACT-A-GAATCCATGTTTGTCTTATTT---AGGCACGAACTTTG
* * * * ** * * * * *
1156952 ATTCTATAA-AAAA-CGGAGAAAAGAAAAGCCTTT-CTTGCGACCCCAAAGCATCAGTGTC-TTG
58 ATT-T-TAAGAAAATAGG-GCAAAG-AAAGGCTTTCCTTGCAAAACAAAATCATCAATATCATTC
** * * * * * *
1157013 TATGCTAGCGAAGGGAATGTGTTTTTGGTTCCCAATC-C
119 TATAAT-GAGAA--GAATGTGCTTATAGTGCCGAATCAC
* * * * * *
1157051 TGAAAAGAATGGAGATTGTTA-TGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
1 --AAAAGAATGAAGATTATTACT-AGAATCCATGTTTGTCTTATTT-AGGCACGAACTTTGATTT
* * * * **
1157115 TCAGGAAAATAGGGCAAAGAAAAGATTT-CTAGGCCAAAA-AAAATCATCAATATCATTTGCCCT
62 T-AAGAAAATAGGGCAAAGAAAGGCTTTCCT-TG-CAAAACAAAATCATCAATATCA-TT-CTAT
**
1157178 AATGA-AGAGACCGTGCTTATAGTGCCGAATCAC
122 AATGAGA-AGAATGTGCTTATAGTGCCGAATCAC
* * * * * *
1157211 AAAATAAAAGAAGATTATTACTAGAATCCATGTTTGTGTCATTTGAGGCATGAACTTAGACTTTG
1 AAAA-GAATGAAGATTATTACTAGAATCCATGTTTGTCTTATTT-AGGCACGAACTTTGA-TTT-
* * * * * * ** ** * * *
1157276 CAA-AAATTGGTGGGAAA-AATGCCTTTGTTTTG-AAGCCAAAA-CATCAATATCGTGTATTCTA
62 TAAGAAAATAG-GGCAAAGAAAGGCTTT-CCTTGCAAAACAAAATCATCAATATCAT-T-CTATA
* ** * *
1157337 ATGAGAAGACTAAGCTTATGGTGCCTAATC-C
123 ATGAGAAGAATGTGCTTATAGTGCCGAATCAC
* * ** * * *
1157368 TGAAAAGAATGGGAA-AGTGTTTGT-GTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGAT
1 --AAAAGAAT--GAAGATTATTACTAGAATCCATGTTTGTCTTATTT-AG-GCACGAACTTTGA-
* * * * * * *
1157430 TCTATTAAAAACAATA--G-AAAGAAAAGCTTTTCC-TGCGACACCAAAGT-ATCAATGTC-TTG
59 T-T-TTAAGAA-AATAGGGCAAAGAAAGGC-TTTCCTTGC-AAAACAAAATCATCAATATCATTC
* * * * * * * **
1157489 TATCTTAATGA-AGGGGATGCGTTTGTAGTTCCCAATCTTG
119 TA---TAATGAGA-AGAATGTGCTTATAGTGCCGAATC-AC
* * * * * *
1157529 AAAAGAATGGAGATTGTTA-TGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
1 AAAAGAATGAAGATTATTACT-AGAATCCATGTTTGTCTTATTT-AGGCACGAACTTTGATTTTA
* * * * ** * *
1157593 AGAAAATAGGGCAGAGAAAAGATTTTCACGCAAAAGAAAATCATCAATATCATT-TATCCTAAAG
64 AGAAAATAGGGCAAAGAAAGGCTTTCCTTGCAAAACAAAATCATCAATATCATTCTA---TAATG
* *
1157657 AGGAGAATGTGTTTATAGTG-CGTAATCAC
126 AGAAGAATGTGCTTATAGTGCCG-AATCAC
* * * * * ** * * * *
1157686 AAAATGAATGAAGATCAATACTAGAATTCTTGTTTGGCTCGTTTGAGGCATGAAGTTAGACTTTA
1 AAAA-GAATGAAGATTATTACTAGAATCCATGTTTGTCTTATTT-AGGCACGAACTTTGATTTTA
* * * * * * * * * * *
1157751 AAAAAATTGGTGGGAAA-AAAGCCTTT-CTT--AAGAGACCAAAGCACCAACATCGTGTATCCTA
64 AGAAAA-TAG-GGCAAAGAAAGGCTTTCCTTGCAA-A-ACAAAATCATCAATATCAT-TCT-ATA
* * *** * * **
1157812 ATAAGAAGACTAAACTTATGGTGCCTAATCGTG
123 ATGAGAAGAATGTGCTTATAGTGCCGAATC-AC
* * ** * * * ** * * *
1157845 GAAAGAACGGGGAATAATA-TGAGTATTTATTTTTGTCTTATTTAAAAG-ACGAACTTTGATTCT
1 AAAAGAATGAAGATTATTACT-AGAATCCATGTTTGTCTTATTT--AGGCACGAACTTTGATTTT
** * * * ** * * * * *
1157908 ATCAAAA-ACGGTGGAAAGAAA-GATTTTCTTGTGACACCAAAGCATCAATGTC-TTGTATCCTA
63 AAGAAAATA-GG-GCAAAGAAAGGCTTTCCTTGCAAAACAAAATCATCAATATCATTCTA---TA
* * * * * *
1157970 ATGA-AAGGAATGTGTTTTTGGTTCCTAATCATG
123 ATGAGAA-GAATGTGCTTATAGTGCCGAATCA-C
** * * * * *
1158003 AAAAGAAT-AGAGGCTATT-GTGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTT
1 AAAAGAATGA-AGATTATTACT-AGAATCCATGTTTGTCTTATTTA-GGCACGAACTTTGATTTT
* * * *
1158066 AAGGAAAATAGGGCAAAGAAAGGATTTCCTTGCAAAATAAGATCATCAATATCATT-TATTATGA
63 AA-GAAAATAGGGCAAAGAAAGGCTTTCCTTGCAAAACAAAATCATCAATATCATTCTATAATGA
1158130 GAAGAATGTGCTTATAGTGCCGAATCAC
127 GAAGAATGTGCTTATAGTGCCGAATCAC
* * *
1158158 AAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
1 AAAA-GAATGAAGATTATTACTAGAATCCATGTTTGTCTTATTT-AGGCACGAACTTTGATTTTA
* * * ** * * *
1158223 AAAAAATTGAGGG-AAA-AAATGCCTTTCTTTTG-AACCCAAAAT-GTCAATGTCGCATATCCA-
64 AGAAAA-T-AGGGCAAAGAAA-GGCTTTC-CTTGCAAAACAAAATCATCAATAT--CAT-TCTAT
* * * *
1158283 AATGAGAAGACTAG-GTTTATGGTGCCAAATC-C
122 AATGAGAAGAAT-GTGCTTATAGTGCCGAATCAC
* * * * * * *
1158315 TAAAAAAATG-GGAATTAGT-CTA-ACTATTCATATTTGTCTTATTTAAAAG-ACAAACTTTGAT
1 -AAAAGAATGAAG-ATTATTACTAGA--ATCCATGTTTGTCTTATTT--AGGCACGAACTTTGAT
* ** * * * * * * * * *
1158376 TCTATCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAACATC-TTGTATC
60 TTTAAGAAAATA-GG-GCAAAGAAAGGCTTTCCTTGCAAAACAAAATCATCAATATCATTCTAT-
* * * * * *
1158439 CAAATGA-AAGAAATGTGTTTTTTGTTCCTAATCGC
122 --AATGAGAAG-AATGTGCTTATAGTGCCGAATCAC
* * * * * * *
1158474 GAAAAGAATGGAGACTA-TAGTGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTT
1 -AAAAGAATGAAGATTATTACT-AGAATCCATGTTTGTCTTATTTA-GGCACGAACTTTGATTTT
* * * *
1158538 AAGGGAAATAGGGCAAAGAAAGGGTTTCCTTGCAAAAGAAAATCATCAATATCATT-TATTATGA
63 AA-GAAAATAGGGCAAAGAAAGGCTTTCCTTGCAAAACAAAATCATCAATATCATTCTATAATGA
*
1158602 GAAGAATGTGCTTATAGTGCCGAATTAC
127 GAAGAATGTGCTTATAGTGCCGAATCAC
1158630 AAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTT
1 AAAA-GAATGAAGATTATTACTAGAATCCATGTTTGTCTTATTT-AGGCACGAACTT
1158687 AGACTTTGCA
Statistics
Matches: 2051, Mismatches: 598, Indels: 495
0.65 0.19 0.16
Matches are distributed among these distances:
153 1 0.00
154 16 0.01
155 90 0.04
156 390 0.19
157 289 0.14
158 561 0.27
159 594 0.29
160 92 0.04
161 16 0.01
162 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (154 bp):
AAAAGAATGAAGATTATTACTAGAATCCATGTTTGTCTTATTTAGGCACGAACTTTGATTTTAAG
AAAATAGGGCAAAGAAAGGCTTTCCTTGCAAAACAAAATCATCAATATCATTCTATAATGAGAAG
AATGTGCTTATAGTGCCGAATCAC
Found at i:1161716 original size:25 final size:25
Alignment explanation
Indices: 1161682--1161729 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
1161672 TTCTATCAAA
1161682 AACGGTGGAAAGAAAAGCTTTTCAT
1 AACGGTGGAAAGAAAAGCTTTTCAT
1161707 AACGGTGGAAAGAAAAGCTTTTC
1 AACGGTGGAAAGAAAAGCTTTTC
1161730 TTGTGACACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.12, G:0.25, T:0.23
Consensus pattern (25 bp):
AACGGTGGAAAGAAAAGCTTTTCAT
Found at i:1164231 original size:159 final size:155
Alignment explanation
Indices: 1159186--1175093 Score: 3059
Period size: 159 Copynumber: 100.9 Consensus size: 155
1159176 TGTTTTGAAG
* * * * ** * *
1159186 CCAAAACATCAATATCGTGTATTCTAATGAGAAGACTAAGCTTATGGTGCCTAATCCTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * * ** * *
1159251 ATGGGAAAGTGTT-TGTGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATTAAAA
65 AT-GGAGATTGTTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAAA
* * * *
1159315 ACGGTAGAAAGAAAAGCTTTTCCTACGACAA
127 ATGG-GGAAAGAAAAGCTTTTCTTGCGA-AA
* * * * * * * * * * *
1159346 -CAAAGTATCAATGTCTTGTATCTTAATGAAGGGGATGCGTTTGTAGTTCCCAATCTTAAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* *
1159410 ATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAT
65 ATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAAAT
* * * ** *
1159475 AGGGCAGAGAAAAGATTTTCACGCAAAA
129 -GGGGAAAGAAAAGCTTTTCTTGCGAAA
** * * *
1159503 GAAAATCATCAATATCATT-TATCCTAAAGAGGAGAATGTGTTTATAGTGCGTAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* *** ** * ** * * * * * *
1159565 TGAATGAAGATCAATACT-AGAATTTTTGTTTGGCTCGTTTGAGGCAAGAAGTTAGACTTTAAAA
63 -GAATGGAGATTGTTA-TGAGAA-TCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAA
* * * *
1159629 AAATTGGTGGGAA-AAAAGCCTTTCTTGAGAGA
125 AAA-TGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * **** * * *
1159661 CCAAAGCACCAACATCGTGTATCCTAATAAGAAGACTAAACTTATGGTGCCTAATCGTGGAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * ** * * * * * ** * * *
1159726 ATGGGGAATAATATGAGTATTTATTTTTGCCTAATTTAAAAGACGAACTTTGATTCTATCAAAAA
65 ATGGAGATTGTTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAAAA
* * *
1159791 CGGTGGAAAGAAAAGATTTTCTTGCGACA
128 TGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * ** * * * *
1159820 CCAAAGCATCAATGTCATGTATCCTAATGAAAGGAACATGTTTTTTGTTCCTAATCGTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAGA-GAATGTGTTTATAGTGCCTAATCCTGAAAAGA
** * * * * * *
1159885 ACCGACACTATTGTTG-GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
65 ATGGAGATTGTT-ATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAAA
* * * * * *
1159949 ATAGGGCAAAGAAAGGATTTCCATGCAAAA
127 AT-GGGGAAAGAAAAGCTTTTCTTGCGAAA
** * * *
1159979 GAAAATCATCAATATCGTT-TAT--T-ATGAGAAGAATGTGCTTATAGTGCCGAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* * * * * * * * **
1160038 TGAATGAAGATTTTTACT-AGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTGCAA
63 -GAATGGAGATTGTTA-TGAGAAT-CATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAA
* * * ***
1160102 AAATTGGGG--GGAAAATGCCTTTCTTTTTAAA
124 AAAATGGGGAAAGAAAA-GCTTTTCTTGCGAAA
* * * * * * * * *
1160133 CCAAAACATCAATATTCGTCTATCCAAATGAGATGACTATGTTTATGGTGCCAAATCCTGAAAAA
1 CCAAAGCATCAATA-TCTTGTATCCTAATGAGA-GAATGTGTTTATAGTGCCTAATCCTGAAAAG
* * * **
1160198 AATGGGGATTAGTCTA--ACTATTCATGTTTGTCTTATTTAAAAGA-GAAACTTTG-TTTCTATA
64 AATGGAGATT-GT-TATGA-GAATCATGTTTGTCTTATTTAAGGGATG-AACTTTGATTT-TA-A
* * * ***
1160259 AAAAAAGGTGGAAAGAAAAGCCTTTCTTGTGGCC
123 AAAAATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * ** * * * *
1160293 CCAAAGCATTAATGTCTTGTATCCTAGCGAAGGGAATGTGCTTT-TGGTTCCCAATCCTGAAAAG
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAATGTG-TTTATAGTGCCTAATCCTGAAAAG
* * * * *
1160357 AATGGAGACTGTTATGAGAGTCAATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAA
64 AATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAAA
* * * * *
1160422 ATACGGCAAAGAAAAGATTTT-TACGCAAAA
127 AT-GGGGAAAGAAAAGCTTTTCT-TGCGAAA
** * * * *
1160452 GAAAATCATCAGTATCATT-TATCCTAATGAGGAGATTGTGTTTATAGTGCATAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* *** * * * * ** * * *
1160514 TGAATGAAGATCAATACT-AGAATTCTTGTTTGGCTCATTTGAGACACGAACTTAGACTTTAAAA
63 -GAATGGAGATTGTTA-TGAGAA-TCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAA
* * **
1160578 AAATTGGTGGGAA-AAAAGCCTTTCTT-AAAAGA
125 AAA-TGG-GGAAAGAAAAGCTTTTCTTGCGAA-A
* * * * * **** * *
1160610 CCCAAGCACCAACATCGTGTATCCTAATGAGAAGACTAAACTAATGGTGCCTAA-CCGTGAAAAG
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCC-TGAAAAG
* * * * ** ** * *
1160674 AATAGG-GAATAG-TACGAGTATTTATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAA
64 AAT-GGAG-ATTGTTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAA
* * *
1160737 AAACGGTGAAAAGAAAAGCTTTTCTTGCGACA
125 AAATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * *
1160769 CCAAAGTATCAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAGA-GAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * * * *
1160834 ATAGAGACTATTGTGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAA
65 ATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAAAA
* * * *
1160899 TAGGGCAAAGAAAGGATTTCCTTGC-AAA
128 T-GGGGAAAGAAAAGCTTTTCTTGCGAAA
* * * *
1160927 -AAAAGATCATCAATATCATT-TAT--T-ATGAGAATAATGTGCTTATAGTGCCGAATCAC--AA
1 CCAAAG--CATCAATATC-TTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATC-CTGAA
* * * * * * * * *
1160985 AATGAATGAAGATTATTACT-AGAATCCATGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTAA
61 AA-GAATGGAGATTGTTA-TGAGAAT-CATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
** *
1161049 AAAAATTTGGGG---GAAAATGAC-TTTCTTTTGAAC
123 AAAAA--TGGGGAAAGAAAA-G-CTTTTCTTGCGAAA
*** * *** * * * * *
1161082 CCAAAATGTCAATGTCGCATATCCAAATGAGAAGACTAG-GTTTATGGTGCCAAATCCT-AAAAA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAAT-GTGTTTATAGTGCCTAATCCTGAAAAG
* * * * ** ** * *
1161145 AATGGGGATTAGTCTA--ACTATTCATATTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAA
64 AATGGAGATT-GT-TATGA-GAATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAA
* *
1161208 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
125 AAATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * *
1161240 CCAAAGCATCAACATCTTGTATCCAAATGAAAGAAATGTGTTTTTTGTTCCTAATCGC-GAAAAG
1 CCAAAGCATCAATATCTTGTATCCTAATGAGAG-AATGTGTTTATAGTGCCTAATC-CTGAAAAG
* * * * * *
1161304 AATGGAGACT-ATAGAGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAGGAA
64 AATGGAGATTGTTA-TGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAA
* * * * **
1161368 AATAGGGCAAAGAAAGGGTTTGCTTGTAAAA
126 AAT-GGGGAAAGAAAAGCTTTTCTTGCGAAA
** * * * * *
1161399 GAAAATCATCAATATCATT-TAT--T-ATGAGAAGAGTGTGCTTATAGTGCCGAAT--TACAAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCT-GAAAA
* * * * * * * **
1161458 TGAATGAAGATTATTACT-AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAA
63 -GAATGGAGATTGTTA-TGAGAAT-CATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAA
* * * * ** *
1161522 AAATTGGGGGGAA-AAATGCCTTTCTTTTGAAT
124 AAAAT-GGGGAAAGAAAAGCTTTTCTTGCGAAA
* * ** * ** * * * * *
1161554 CGAAAACATCAATATCGCGTATCCTAAAGAGAAGGCTATGTTTATGGTGCTTAATCCGGAAAAAA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * * * * *
1161619 ATGGGGATTAGTCTA--ACTATTCTTGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAA
65 ATGGAGATT-GT-TATGA-GAATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAA
*
1161682 AACGGTGGAAAGAAAAGCTTTTCATAACGGTG-GAAA
126 AATGG-GGAAAGAAAAGCTTTTC-T-----TGCGAAA
** * * * * * ***
1161718 GAAAAGC-T---TTTCTTGTGA-CAC-CAT-AGCATCAATGT-CTTGTA-T-CCTAATGAAGGGA
1 CCAAAGCATCAATATCTTGT-ATC-CTAATGAG-A-GAATGTGTTTATAGTGCCTAAT--CCTGA
* ** * ** ** * * ** ** *
1161773 ATGAGTTTGTAGTTCCTAATCCTTAAAAGAATGGA-GATTG--TTATGAAATCGATG--CTTGTC
60 A-AAGAATGGAG------ATTGTTATGAGAAT-CATGTTTGTCTTATTTAAGGGATGAACTT-TG
* * * ** * ***
1161833 TTATTTAAGGGATGAACT-TTGATTTTTAGGAAAA----TAGGTGC-AAGA
116 AT-TTTAA---A-AAAATGGGGA-----AAGAAAAGCTTTTCTTGCGAA-A
* * ** * * *
1161878 -AAAATCATCAATATCATT-TGCCCTAACGAAGAGAATGTGCTTATAGTGCCGAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* * * * * * * * **
1161939 TGAAAGAAGATTATTACT-AGAATCCATGTTTGTGTCATTTGAGGCATGAACTTAGACTTTGCAA
63 -GAATGGAGATTGTTA-TGAGAAT-CATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAA
* * * * * ** *
1162003 AAATTGGTGGGAA-AAATGCCTTTGTTTTGAAG
124 AAAATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * ** * *
1162035 CCAAAACATCAATATCGTGTATTCTAATGAGAAGACTAAGCTTATGGTGCCTAATCCTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * * ** * *
1162100 ATGGGAAAGTGTT-TGTGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATTAAAA
65 AT-GGAGATTGTTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAAA
* ** * *
1162164 ACGATAGAAAGAAAAGCTTTTCCTGCGACA
127 ATG-GGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * * * * *
1162194 CCAAAGTATCAATGTCTTGTATCTTAATGAAGGGGATGCGTTTGTAGTTCCCAATCTTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * *
1162259 ATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTCTGATTTTAAGAAAAT
65 ATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAAAT
* * * * *
1162324 AGGGCAGAGAAAAGATTTT-TACGCAAAA
129 -GGGGAAAGAAAAGCTTTTCT-TGCGAAA
** * * *
1162352 GAAAATCATCAATATCATT-TATCCTAAAGAGGAGAATGTGTTTATAGTGCGTAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* *** * * * * * * * *
1162414 TGAATGAAGATCAATACT-AGAATTCTTGTTTGGCTCATTTGAGGCATGAAGTTAGACTTTAAAA
63 -GAATGGAGATTGTTA-TGAGAA-TCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAA
* * ** *
1162478 AAATTGGTGGGAA-AAAAGCCTTTCTTAAGAGA
125 AAA-TGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * **** * * *
1162510 CCAAAGCACCAACATCGTGTATCCTAATAAGAAGACTAAACTTATGGTGCCTAATCGTGGAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * * * ** * * *
1162575 A-CGAGGA-AGAATATGAGTATTTATTTTTGTCTTATTTAAAAGACGAACTTTGATTCTATCAAA
65 ATGGA-GATTG-TTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAA
* * *
1162638 AACGGTGGAAAGAAAAGATTTTCTTGCGACA
126 AATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * * *
1162669 CCAAAGCATTAATGTCTTGCATCCTAATGAAGGGAATGTGTTTGTAGT-TCTCAATGCTTAAAAG
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCT-AATCCTGAAAAG
* * * * * * **
1162733 AATGGATATTTTTATTAGAATCGAAGCTTGTCCTATTTAAGGGATGAACTTTGATTTTCAGGAAA
64 AATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTT-AAAAAA
* * *
1162798 ATAGGGTAAAGAAAAGATTTTCAT--GAAA
127 AT-GGGGAAAGAAAAGCTTTTCTTGCGAAA
** ** * * * *
1162826 AAAAAATATCAATATCATT-T-GCCGTAATGAAGAGAATGTGCTTATAGTGCGTACCACCACTTT
1 CCAAAGCATCAATATC-TTGTATCC-TAATG-AGAGAATGTGTTTATAGTGCCTA--ATC-C--T
* ** * *** * * * * * * *
1162889 TATAGTGCGTAATGAAGATCAATACT-AGAATTCTTGTTTGGCTCATTTGAGGCACT-AACGTAG
58 GA-A--AAG-AATGGAGATTGTTA-TGAGAA-TCATGTTTGTCTTATTTAAGGGA-TGAACTTTG
* * * *
1162952 ACTTCAAAAAAATTGGTTGG-AA-AAAGGCCTTTCTT----AA
116 ATTTTAAAAAAA-TGG--GGAAAGAAAAGCTTTTCTTGCGAAA
* * * ** * * *
1162989 --GAA-C--CAA-ATCGTGTATCCTAATGAGTAGACTAAGCTTATGGTGCCTAATCATGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * * ** ** * *
1163048 ATAGG-GAATAG-TATGAGTATTTATTTTTTTCTTATTTAAAAGACAAACTTTGATTCTATCAAA
65 AT-GGAG-ATTGTTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAA
* *
1163111 AACGGTGGAAAGAAAAGCTTTTCTTGCGACA
126 AATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
** * * * * *
1163142 CCAAAGCATCAACGTCTTGTATCCAAATGAAAGAAATGTGTTTTTTGTTCCTAATCGC-GAAAAG
1 CCAAAGCATCAATATCTTGTATCCTAATGAGAG-AATGTGTTTATAGTGCCTAATC-CTGAAAAG
* * * * * *
1163206 AATGGAGACTATTGTGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAA
64 AATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAAA
* * * * *
1163271 ATAGGGCAAAGAAAGGATTTCCTTGCAAAA
127 AT-GGGGAAAGAAAAGCTTTTCTTGCGAAA
** * * *
1163301 GAAAATCATCAATATCATT-TAT--T-ATGAGAAGAATGTGCTTATAGTG-CTGAAT--TACAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCT-AATCCT-GAAA
* * * * * * * * **
1163359 ATGAATGAAGCTTTTTACT-AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCA
62 A-GAATGGAGATTGTTA-TGAGAAT-CATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAA
* * *
1163423 AAAATTAGGGG---GAAAATGCCTTTCTTTTC-AAA
123 AAAAAT-GGGGAAAGAAAA-GCTTTTC-TTGCGAAA
* * * * * *
1163455 CCAAAACATCAATATCGTGTATCCCAATGAGAAGACTGTGTTTATGGTGCCAAATCCTGAAAA-A
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * *
1163519 TATGGGGATTAGTCTA--ACAATTCATGTTTGTCTTATTTAAAAGGCA--AACTTTGATTCTATC
65 -ATGGAGATT-GT-TATGAGAA-TCATGTTTGTCTTATTT--AAGGGATGAACTTTGATT-T-T-
* * * **
1163580 AAAAACA-GTGGAAAGAAAAGCCTTTCTTGCGACC
121 AAAAAAATGGGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * * * *
1163614 CCAAAGCATTAGTGTCTTGTATCCTAGCA-AAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAG
1 CCAAAGCATCAATATCTTGTATCCTA--ATGAGAGAATGTGTTTATAGTGCCTAATCCTGAAAAG
* * * * **
1163678 AATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTCAGGAAA
64 AATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTT-AAAAAA
* * * *
1163743 ATAGGGCAAAGAAAAGATTTCCATGC-AAA
127 AT-GGGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * *
1163772 -AAAATCATCAATATCATT-T-CCCTAATGAAGAGAATATGCTTATAGTGCCGAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* * * * * * * * * * * ** *
1163832 TAAAAGAAGATTATTGCT-AGGATCCATGTTTGTGTCATTTGAGGCATGAACTTAGACTTTGCAG
63 -GAATGGAGATTGTT-ATGAGAAT-CATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAA
* * * * **
1163896 AAATTGGTGGGAA-AAATGCCTTTCTTTTGAAA
124 AAAATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* ** * * * * * *
1163928 CCAAAACATCAATATCGCGTATTCTAATGAGGAGACTGAGCTTATGGTGCCTAATGCTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* ** * * ** * *
1163993 ATGGGAAAGAGTATGTGTAGAAT-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
65 AT-GGAGATTGT-TATG-AGAATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAA
* * *
1164057 AACGGAAGAAAGAAAAGCTTTTCTTGCGACA
126 AATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * *
1164088 CCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGCGTTTGTAGTTCCCAATCCTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* *
1164153 ATGGAGATTGTTAGGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAA
65 ATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAA-AAAA
* * * *
1164218 TGGGGCAAAGAAAAGATTTCCATGCCAAA
128 TGGGG-AAAGAAAAGCTTTTCTTGCGAAA
** * * * *
1164247 GAAAATCATCAATACCATT-TATTCTAATGAGGAGAATGTGTTTATAGTGCGTAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTAATC-CTGAAAA
**** * ** * ** * * * * * *
1164309 TGAATGGAGATCAAAACT-AGAATTCTTCCTTGGCCCATTTGAGGCACGAACTTAGACTTCAAAA
63 -GAATGGAGATTGTTA-TGAGAA-TCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAA
* ** *
1164373 AAATTGGTAGG-AA-AAAAGCCTTTCTTAAGAGAC
125 AAA-TGG--GGAAAGAAAAGCTTTTCTTGCGA-AA
* * * * * ** * * *
1164406 CCAAA-CACCAACATCGTGTGTCCTAATGAGATGACTAAGCTTT-TGGTGCCTAGTCATGAGAAA
1 CCAAAGCATCAATATCTTGTATCCTAATGAGA-GAATGTG-TTTATAGTGCCTAATCCTGA-AAA
* * * * * *
1164469 -AATGGGGAATAGTT-TGAGTATTTATGTTTTTCTTATTTAAAAGGCA--AACTTTGATTCTATA
63 GAATGGAG-ATTGTTATGAG-AATCATGTTTGTCTTATTT--AAGGGATGAACTTTGATT-T-TA
* *
1164530 AAAAAA-GGTGGAAAGGAAAGCTTTTCTTGCG-AC
122 AAAAAATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
** * * * * * **
1164563 CCTAAAGCATCAATGGCTTGTATCCTTATGAAGAGAATGTGTTTTTGGTTCCCAATTTTGAAAAG
1 CC-AAAGCATCAATATCTTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATCCTGAAAAG
* * * * * *
1164628 AATGGAGACTATTATTAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTAATAGAA
64 AATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAAA
* * * * * *
1164693 ATAGAGCAAAGAAAGGATTTTCATGCAAAA
127 AT-GGGGAAAGAAAAGCTTTTCTTGCGAAA
** * * * *
1164723 GAAAATCATTAATATCATT-TAT--T-ATGAGAAGAATGTGCTTATAGTGCCGAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* * * * * * * * **
1164782 TGAATGAAGATTATTACT-ACAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAA
63 -GAATGGAGATTGTTA-TGAGAAT-CATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAA
* * * * **
1164846 AAATTGGTGGGAA-AAATGCCTTTCTTTTGAAA
124 AAAATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * ** * * * * *
1164878 CTAAAACATCAATATCGCGTATCC-AATTGAGAAGACTATGTTTATGGTGCCAAATCCTAAAAAA
1 CCAAAGCATCAATATCTTGTATCCTAA-TGAG-AGAATGTGTTTATAGTGCCTAATCCT-GAAAA
* * * * * * *
1164942 AAATGGGGATTCGTCTA--ACTATTCATGTTTGTCATATTTAAAAGGCA--AACTTTGATTCTAT
63 GAATGGAGATT-GT-TATGA-GAATCATGTTTGTCTTATTT--AAGGGATGAACTTTGATTTTA-
* *
1165003 CAAAAA-GGTGGAAAGAAAAGCTTTTCTTGC-AACC
122 AAAAAATGG-GGAAAGAAAAGCTTTTCTTGCGAA-A
* * * * * * *
1165037 CCAAAGCATCAATGTCTTATATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * ** *
1165102 ATAGAGACTATTATGAGAATTGATGCCTGTCTTATTTAGGGGATGAACTTTGATTTTAAGAAAAA
65 ATGGAGATTGTTATGAGAA-TCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAAAA
* ** * * *
1165167 TAGGGCAAAGAAGGGATTTTCATGCAAAA
128 T-GGGGAAAGAAAAGCTTTTCTTGCGAAA
** * * * * *
1165196 GAAAATCATCAATATAATT-TAT--T-ATGAGAAGAATGTGCTTACAGTGCCGAATCAC--AAAA
1 CCAAAGCATCAATAT-CTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* * * * * * * * * **
1165255 TAAATGAAGATTATTACT-ACAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAA
63 -GAATGGAGATTGTTA-TGAGAAT-CATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAA
* * * * **
1165319 AAATTTGGG-AGGAAAATGCCTTTCTTTTGAAA
124 AAAATGGGGAAAGAAAA-GCTTTTCTTGCGAAA
** * * * * *
1165351 CCAAAGCATCAATATCACGTATCCTAATGAGAAGACTATG-TTATTGTGTCTAATCCT-AAAAAA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * * ** *
1165414 AAGGAGATTAGTCTA--ACTATTCATGTTTGTCTTATTCAAGAGACAAACTTTGA-TTCAATCAA
65 ATGGAGATT-GT-TATGA-GAATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA--AA
* * *
1165476 AAACGGTGAAAAGAAAAGCTTTTCTTGCGACA
125 AAATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * *
1165508 CCAAAGCATCAATTTCTTATAT-C-AATGAAGGGAATGTGTTTGTAGTTCCCAATCCTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
*
1165571 ATGGAGATTGTTATGAGAATCTATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAGGGAAAA
65 ATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA---AAAA
* * * * ** *
1165636 CA-GGGCAAAGAAAAGATTTCCACGCAAAA
126 AATGGGGAAAGAAAAGCTTTTCTTGCGAAA
** * * **
1165665 GAAAATCATCAGTATCGTT-TATCCTAATGAGGAGAATGTGTTTATAGTGCAGAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* *** * * * * * * *
1165727 TGAATGAAGATAAATACT-AGAATTCTTGTTTGGCTCT-TTTGAGGTACGAACTTAGAGTTTAAA
63 -GAATGGAGATTGTTA-TGAGAA-TCATGTTTGTCT-TATTTAAGGGATGAACTTTGATTTTAAA
** * **
1165790 AAAATTGGGGGGA-AAAAGCCTTTCTTAAGAAA
124 AAAA-TGGGGAAAGAAAAGCTTTTCTTGCGAAA
* * * ** * * *
1165822 CCAAAGCACCAACAT-TGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAATCGTGAAAAG
1 CCAAAGCATCAATATCT-TGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAG
* * * * * * ** * * *
1165886 AATGGGGAATAG-TATGAGTATTTATTTTTGTCTTTTTTAAAAGATAAACTTTGATTCTATCAAA
64 AATGGAG-ATTGTTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAA
* *
1165950 AACGGTGGAAAGAAAAGCTTTTCTTGCGACA
126 AATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * *
1165981 CCAAAGCATCAATGTCTTGTATCCTAATGAAAGGAACGTGTTTTTTGTTCCTAATCGTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAGA-GAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * *
1166046 ATGGAGACTATTGTGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
65 ATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAAAA
* * * * * *
1166111 TAGGGCAAAGAAAGGATTTCCATGCAAAA
128 T-GGGGAAAGAAAAGCTTTTCTTGCGAAA
** ** * * *
1166140 GAAAATTATCAATATCATT-TAT--T-ATGAGAAGAATGTGCTTATAGTTCCGAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* * ** * * * * **
1166199 TGAATGAAGATTTTTACT-AGAATCCATGTTTGTCGCATTTGAGGCACGAACTTAGACTTTGCAA
63 -GAATGGAGATTGTTA-TGAGAAT-CATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAA
* * * * **
1166263 AAATTGGTGAGAA-AAATGCCTTTCTTTTGAAA
124 AAAATGGGGA-AAGAAAAGCTTTTCTTGCGAAA
* * * * * ** * ** *
1166295 CCAAAACATCAATACTCGTGTACCCAAATGAGAAGACTACGTTTATGGTG-AAAATCCT-AAAAA
1 CCAAAGCATCAATA-TCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAG
* * *
1166358 AAT-GAGGATTAGTCTA--ACTATTCATGTTTGTCTTATTTAAAAGGCA--AACTTTG-TTTCTA
64 AATGGA-GATT-GT-TATGA-GAATCATGTTTGTCTTATTT--AAGGGATGAACTTTGATTT-TA
* * * **
1166417 TCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCGACC
122 -AAAAAATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* ** * * * * *
1166453 CCAAAGCATCAATGTCTTGTATCCTAGCGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* *
1166518 ATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTT-AGGGAATGAACTTTGATTTTAAGGAAA
65 ATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGG-ATGAACTTTGATTTTAA--AAA
* * * ** *
1166582 ATAT-GGTAAAGAAAAGATTTCCACGCAAAA
126 A-ATGGGGAAAGAAAAGCTTTTCTTGCGAAA
** * * * *
1166612 GAAAATCATCAATATCATT-TATCCTAATGAGGAGATTGGGTTTATAGTGCGTAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* **** * * * * * *
1166674 TGAATGAAGATCAACACT-AGAATTCTTGTTT-TGCTCATTTGAGGCATGAACTTAGACTTTAAA
63 -GAATGGAGATTGTTA-TGAGAA-TCATGTTTGT-CTTATTTAAGGGATGAACTTTGATTTTAAA
* * *** *
1166737 AAAATTGGTGGGAA-AAAAGCCTTTCTAAAGAGA
124 AAAA-TGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * **** * *
1166770 CCAAAGCACCAACATCGTGTATCCTAATGAGAAGACTAAACTAATAGTGCCTAA-CCGTGAAAAA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCC-TGAAAAG
* * * * * ** ** * *
1166834 AATGGGGAATAG-GATGAGTATTTATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAA
64 AATGGAG-ATTGTTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAA
* * * * *
1166898 GACGGTGAAAAGAAAAGCTTTTTTTGCGACA
126 AATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * * *
1166929 CCAAAGTACCAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCATGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAGA-GAATGTGTTTATAGTGCCTAATCCTGAAAAGA
** * * * *
1166994 ATAAAGACTATTGTGAGAATCGATGTTTGTCTTATTTAGGGGATGAACTTTGATTTTAAGGAAAA
65 ATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA--AAAA
* ** * *
1167059 TAT-GGCAAAGAAGGGATTTTCATGCGAAA
127 -ATGGGGAAAGAAAAGCTTTTCTTGCGAAA
** * * * *
1167088 GAAAATCATCAATATCAAT-TAT--T-ATGAGAAGAATGTGCTTATAGTGCCGAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* * * * * * * * * * **
1167147 TGAATGAACATTATTACT-ACAATCTAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAA
63 -GAATGGAGATTGTTA-TGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAA
* * * * *
1167211 AAATTAGGGGGAA-AAATGCCTTTCTTTCGAAA
124 AAAAT-GGGGAAAGAAAAGCTTTTCTTGCGAAA
* ** * * * *
1167243 CCAAAACATCAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA-CCTGAAAAAA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * **
1167307 ATGGAGATTAGTCTA--ACTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
65 ATGGAGATT-GT-TATGA-GAATCATGTTTGTCTTATTTAAGGGATGAACTTTGATT-T-T-AAA
* * * *
1167370 AACA-GTGGAAAGAAAAGCTTTTCTTGTGACA
124 AAAATGGGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * * *
1167401 CCAAAGCATCAGT-GCTTGTATCCTAATGAAGGGAATGAGTTTGTAGTTCCTAATCCTTAAATGA
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * *
1167465 ATGGAGATTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTCAAGAAAA
65 ATGGAGATTGTTATGAGAA-TCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTT-AAAAAAA
* * *
1167530 TAGGGCG-AAGAAAAGATTTCCATGC-AAGA
128 T-GGG-GAAAGAAAAGCTTTTCTTGCGAA-A
* * ** * * *
1167559 -AAAATCATCAATATCATT-TGCCCTAATGATGAGAATCTGCTTATAGTG-CTGAATCAC-AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGA-GAGAATGTGTTTATAGTGCCT-AATC-CTGAAA
* * * * * * * * **
1167620 AGAAAGAAGATTATTACT-AGAATCCATGTTTGTGTCATTTGAGGCATGAACTTAGACTTTGCAA
62 AGAATGGAGATTGTTA-TGAGAAT-CATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAA
* * * * * ** *
1167684 AAATTGGTGGGAA-AAATGCCTTTGTTTTGAAG
124 AAAATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * ** * *
1167716 CTAAAACATCAATATCATGTATTCTAATGAGAAGACTAAGCTTATGGTGCCTAATCCTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * ** ** * *
1167781 ATGGGAAAGTGTT-TGTGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAA
65 AT-GGAGATTGTTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAAA
*
1167845 ACGGTGGAAAGAAAAGCTTTTCTTGC-AACA
127 ATGG-GGAAAGAAAAGCTTTTCTTGCGAA-A
* * * * * * * * *
1167875 CTAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGCGCTTGTAGTTCCCAATCTTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * *
1167940 ATGGAAATTGTTTTGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTCAAGAAAAT
65 ATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAAAT
* * * * * ** *
1168005 AGGCAGAGAAAAGATTTCCACGCAAAA
129 GGGGAAAGAAAAGCTTTTCTTGCGAAA
** * * * *
1168032 GAAAATCTTCAATATCATT-TATCCTAAAGAGGAGAATGTGTTTATAGTGCGTAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* * *** * * ** * * * *
1168094 TAAATGAAGATCAATACT-AGAATTCTTGTTTGGCTCGTTTGAGGCACGAACTTAGATTTTAAAA
63 -GAATGGAGATTGTTA-TGAGAA-TCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAA
* * *** ***
1168158 AAATTGGTGGGAA-AAAAGCCTTTCTAAAGGGG
125 AAA-TGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * **** * *
1168190 CCAAAGCACCAACATCGTGTATCCTAATAAGAAGACTAAACTTATAGTGCCTAATCGTGGAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * * * * *
1168255 ATGGGGAATAG-TATGAGTATTTATTTTTGTCTTATTTGAA-AG-TCAAACTTTGATTCTATAAA
65 ATGGAG-ATTGTTATGAG-AATCATGTTTGTCTTATTT-AAGGGAT-GAACTTTGATTTTA-AAA
* **
1168317 AAACGGTGGAAAGAAAATATTTTCTTGC-AACA
125 AAATGG-GGAAAGAAAAGCTTTTCTTGCGAA-A
* * * * * *
1168349 CCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGCGTTTGTAGTTCCCAATCCTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * **
1168414 ATGGAGATTGTTATAAGAATTGAAGCTTGTCTTATTTAAGGGATGAACTTTGATTTTCAGGAAAA
65 ATGGAGATTGTTATGAGAA-TCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTT-AAAAAAA
* * *
1168479 TAGGGCAAAGAAAAG-ATTTCAATGC-AAA
128 T-GGGGAAAGAAAAGCTTTTC-TTGCGAAA
* ** * * *
1168507 --AAGAACATCAATATCATT-TGCCCAAATGAAGAGAATGTGCTTATAGTGCATAATCAC--AAA
1 CCAA-AGCATCAATATC-TTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATC-CTGAAA
* *** * * * * * * * * ** *
1168567 ATGAATGAAGATCAATACT-AGAATTCTTGTTTGGCTCATTTGAGGCACGAACGTAGGCTTCAAA
62 A-GAATGGAGATTGTTA-TGAGAA-TCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAA
* **
1168631 AAAATTGGTGGGAAA-AAAAGCCTTTCTTAAG-AA
124 AAAA-T-G-GGGAAAGAAAAGCTTTTCTTGCGAAA
* ** * * * *
1168664 CC-AA-CATC-A-A----GTATCCTAATGAGTAGACTAAGCTTATGGTGCCTAATCATAAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * ** ** * *
1168721 ATAGGCA-ATAG-TATGAGTATTTATTTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAA
65 AT-GG-AGATTGTTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAA
* ** *
1168784 AACGGTGGAAAGAAAAGCTTTTCTTATGACA
126 AATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
** * * * **
1168815 CCAAAGCATCAACGTCTTGTATCCAAATGAAAGAAATGTGTTTTTTCCT-CCTAATCAC-GAAAA
1 CCAAAGCATCAATATCTTGTATCCTAATGAGAG-AATGTG-TTTATAGTGCCTAATC-CTGAAAA
* * * * * * * *
1168878 TAGTGGAGACTATTGTGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAGGAA
63 GAATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAA
* * * *
1168943 AATAGGGCAAA-AAAAGGATTTCCTTGCAAAA
126 AAT-GGGGAAAGAAAA-GCTTTTCTTGCGAAA
** * * * *
1168974 GAAAATCATCAATATCATT-TAT--T-ATGAGAAGAATGTGCTTATAGTG-TTGAAT--TACAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCT-AATCCT-GAAA
* * * * * * * * *
1169032 ATGAATGAAGATTTTTACT-AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTAAAA
62 A-GAATGGAGATTGTTA-TGAGAAT-CATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAA
* ** * **
1169096 AAAATTGGGGGTAA-AATTGCCTTTCTTTTGAAA
124 AAAA-T-GGGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * * * *
1169129 CCAAAACATCAATATCATGTATCCAAATGAGAAGACTATGTTTATGGTGCCAAATCTTGAAAAAA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * **
1169194 ATGGGGATTAGTCTA--ACAATTCTTGTTTGTCTTATTTAAAAGGCA--AACTTTGATTTTATCG
65 ATGGAGATT-GT-TATGAGAA-TCATGTTTGTCTTATTT--AAGGGATGAACTTTGATTTTA-AA
* * **
1169255 AAAACGGTGGAAAGAAAAGCCTTTCTTGCGACC
124 AAAATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * ** * * * * * * *
1169288 CCAAAGCATCAGTGTCTTGTATCCTAGCGAAGGGAATGTGTTTTTGGTTCCCAATCCTAAAAAAA
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * *
1169353 ATGGAGACTGTTATGAGAATCAATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTAAGGAAAA
65 ATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAAAA
* * * **
1169418 TACGGCAAAGAAAAGATTTTCACGC-AAA
128 T-GGGGAAAGAAAAGCTTTTCTTGCGAAA
** * * * *
1169446 AAAAATCATCAATATCATT-TATCTTAATGAGGAGATTGTGTTTATAGTGCGTAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* * *** * * * * ** * *
1169508 TAAATGAAGATCAATACT-AGAATTCTTGTTTGGCTCATTTAAGGAACAAACTTAGACTTTAAAA
63 -GAATGGAGATTGTTA-TGAGAA-TCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAA
* * *
1169572 AAATTGGTGGGAAA-AAAA-CCTTTC-TGAAGAGA
125 AAA-T-G-GGGAAAGAAAAGCTTTTCTTG-CGAAA
* * * * **** * *
1169604 CC-AAGCACCAACATCGTGTATCCTAATGAGAAGACTAAACTAATGGTGCCTAA-CCGTGAAAAG
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCC-TGAAAAG
* ** * * ** ** * *
1169667 AATGGTG-TATACTATGAGTATTTATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAA
64 AATGGAGAT-TGTTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAA
* * * * *
1169731 AACGGTGAAAAGAAATGCTTTTCTAGCGACA
126 AATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * *
1169762 CTAAAGTATCAATTTCTTGTATCCTAATGAAAGGAATGTGTTTTTAGTTCCTAATCATGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAGA-GAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * * * *
1169827 ATAGAGACTATTGTGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAA
65 ATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAAAA
* * * *
1169892 TAGGGCAAAGAAATGATTTCCTTGC-AAA
128 T-GGGGAAAGAAAAGCTTTTCTTGCGAAA
** * * * *
1169920 AGAAGATCAGCAATATCATT-TAT--T-ATGAGAAGAATGTGCTTATAGTGCCGAATCAC--AAA
1 CCAA-AGCATCAATATC-TTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATC-CTGAAA
* * * * * * * * *
1169979 ATGAATGAAGATT-TTGT-AGAATCCATGTTTGTCTTACTTGAGGCACGAAGTTAGACTTTAAAA
62 A-GAATGGAGATTGTTATGAGAAT-CATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAA
*** * ** *
1170042 AAATTGGGGGGGGAAAATGCCTTTCTTTTGAAC
125 AAA-TGGGGAAAGAAAA-GCTTTTCTTGCGAAA
* * ** * * ** * * *
1170075 CCAAAACGTCAATATCGCGTATCC-AAAGAGAAGACTACGTTTATGGTGCCAAATCCT-AAAAAA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * ** ** * * *
1170138 ATGGGGATTAGTCTA--ACTATTCATGTTTATCTTATTTAAAAGAAAAAATTTGATTCTATCAAA
65 ATGGAGATT-GT-TATGA-GAATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAA
* *
1170201 AATGGTGGAAAGAAAAGCCTTTCTTGCG-AC
126 AATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* ** * * * * * *
1170231 CCGAAGGCATCGGTGTCTTGTATCCTAGA-GAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAA
1 CC-AAAGCATCAATATCTTGTATCCTA-ATG-AGAGAATGTGTTTATAGTGCCTAATCCTGAAAA
* * * * * * *
1170295 GAATGGAGACTATTATGAGAATCGATGCTTGTCTTATATAGGGGATGTACTTTGATTTTAAGGAA
63 GAATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAA
* ** * *
1170360 AATAGGGCAAAGAAGGGATTTTCATGCGAAA
126 AAT-GGGGAAAGAAAAGCTTTTCTTGCGAAA
** * *
1170391 AAAAATCATCAATATCATT-TAT--T-ATGAGAAGAATGTGTTTATAGTGCCGAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* * * * * * * * * **
1170450 TGAATGAAGATTTTTACT-ACAATCTAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAA
63 -GAATGGAGATTGTTA-TGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAA
* * * * **
1170514 AAATTGGGAGGAA-AAATGCCTTTCTTTTGAAA
124 AAAATGGG-GAAAGAAAAGCTTTTCTTGCGAAA
* ** * * ** * *
1170546 CCAAAACATCAATATCGCGTATTCTAATGAGAAGACTAAGCTTATGGTGCCTAATCCTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
** * * * ** * * *
1170611 ATGG-GAAAGAGTATGTGTATTCATGTTTGTCTTATTTAAGAAGAGACAAACTTTAATTCTATCA
65 ATGGAGATTG-TTATGAG-AATCATGTTTGTCTTATTTAAG--G-GATGAACTTTGATTTTA-AA
* * *
1170675 AAAACGGTGGAAAGAAAAGCTTTTCTTGTGACA
124 AAAATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * *
1170708 CCAAAGCGTCAATGTCTTGTATCCTAATGAAGGGAATGAGTTTGTAGTTCCTAATCCTTAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * **
1170773 ATGGAGATTTTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTCAGGAAAA
65 ATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTT-AAAAAAA
* * * *
1170838 TAGGGTAAAGAAAAGATTTCCATGC-AAA
128 T-GGGGAAAGAAAAGCTTTTCTTGCGAAA
* * *
1170866 CAAAATG-ATCAATATCATT-T-TCCCTAATGAAGAGAATGTGCTTATAGTGCCGAATCAC--AA
1 CCAAA-GCATCAATATC-TTGTAT-CCTAATG-AGAGAATGTGTTTATAGTGCCTAATC-CTGAA
* * * * * * **
1170926 AATGAAAGAAGATTATTACT-AGAATCCATGTTTGTC--ATTTGAGGCATGAACTTAGACTTTGC
61 AA-GAATGGAGATTGTTA-TGAGAAT-CATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTTA
* * * * * ** *
1170988 AAAAATTGGGGGGAA-AAATGCCTTTGTTTTGAAG
122 AAAAAAT-GGGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * ** * *
1171022 CCAAAACATCAATATCCTGTATTCTAATGAGAAGACTAAGCTTATGGTGCCTAATCCTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * ** ** *
1171087 ATGGGAAAGTGTT-TGTGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATAAAAA
65 AT-GGAGATTGTTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAAA
* * * *
1171151 ACGGTAGAAAGAAAAGCTTTTCCTGCGACA
127 ATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * ** * * * *
1171181 CCAAAGCATCAATGTCTTATATCCTAATGAAGGGAATGCATTTGTAGTTCCCAATCTTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * **
1171246 ATGGAGATTGTTTTGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGATTAT
65 ATGGAGATTGTTATGAGAA-TCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAAAT
* * * * ** *
1171311 AGGGCAGAGAAAAGATTTCCACGCAAAA
129 -GGGGAAAGAAAAGCTTTTCTTGCGAAA
** * * * *
1171339 GAAAATCATAAATATCATT-TATCCTAAAGAAGAGAATGTGTTTATAGTGCGT-ATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* *** * * ** * * * *
1171400 TGAATGAAGATCAATACT-AGAATTCTTGTTTGGCTCGTTTGAGGTG-CGAACTTAGACTTTAAA
63 -GAATGGAGATTGTTA-TGAGAA-TCATGTTTGTCTTATTTAAGG-GATGAACTTTGATTTTAAA
* * ** *
1171463 AAAATTGGTGGGAA-AAAAGCCTTTCTTAAGAGA
124 AAAA-TGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * **** * *
1171496 CCAAAGCACCAATATCGTGTATCCTAATAAGAAGACA-AAACTTA-AGGTGCCTAATCGTGGAAA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGA-ATGTGTTTATA-GTGCCTAATCCTGAAAA
* * * * * ** ** * *
1171559 GAATGGGGAATAG-TATGAGTATTTATTTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAA
63 GAATGGAG-ATTGTTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAA
* *
1171623 AAATGGTGGAAAGAAAAGATTTTCTTGCGACA
125 AAATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * *
1171655 CCAAAGCATCAATGTCTTGTATCGTAATGAAGGGAATGCGTTTGTAGTTCCCAATCCTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * *
1171720 ATGGAGATTGTTATGAGAATTGAAGCTTGTCTTATTTAGGGGATGAACTTTGATTTTCAGGAAAA
65 ATGGAGATTGTTATGAGAA-TCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTT-A--AAAA
* * * * * *
1171785 GA-GGGCAAAGGAAAGATTTCCATGC-AAA
126 AATGGGGAAAGAAAAGCTTTTCTTGCGAAA
** ** * * *
1171813 AGAAA-CATCAATATCATT-TGCCCTAATGAAGAGAATGTGCTTATAATGCGTAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* *** * * * * * * * *
1171874 TGAATGAAGATCAATACT-AGAATTCTTGTTTGGCTCATTT-GGGGCACGAACTTAGACTTAAAA
63 -GAATGGAGATTGTTA-TGAGAA-TCATGTTTGTCTTATTTAAGGG-ATGAACTTTGATTTTAAA
*
1171937 AAAATTGGTGGGAA-AAAAGC-TTTCTT----AA
124 AAAA-TGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * ** * * **
1171965 --GAA-C--CAACATCGTGTATCCTAATGAGTAGACTAAGCTTATGGTGCCTAATTATGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * * ** ** * *
1172025 ATAGG-GAATAG-TGTGAGTATTTATTTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAA
65 AT-GGAG-ATTGTTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAA
*
1172088 AATGGTGGAAAGAAAAGCTTTTCTTGCGACA
126 AATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * *
1172119 CCAAAGCATCAATGTCTTGTATCCTATTGCAGGGAATACGT-TTTTTTGAT-CCCAATCTTGAAA
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAAT--GTGTTTATAG-TGCCTAATCCTGAAA
* * * *
1172182 AGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGA
62 AGAATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AA
* * * **
1172247 AAATAGGGTAAAGAAAAGATTTCCACGC-AAA
125 AAAT-GGGGAAAGAAAAGCTTTTCTTGCGAAA
* ** * * *
1172278 -AAAAAAATCAATATCATT-TATCCTATTGAGAAGAATGTGTTTATTGTGCGTAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* *** ** * ** * * * * * *
1172339 TGAATGAAGATAAATACCAGAATTCTTGTTTGTCCCATTTGAGGCACGAACTTAGACTTAAAAAA
63 -GAATGGAGATTGTTATGAGAA-TCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAA
* *
1172404 AATTGGTGGGAA-AAAAGCCTTTCTT----AA
126 AA-TGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * **
1172431 --GAA-C-T-AACATCGTGTATCCTAATGAGTAGACA--AGCTTATGGTGCCTAATTATGAAAAG
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGA-ATGTGTTTATAGTGCCTAATCCTGAAAAG
* * * * ** ** * *
1172489 AATAGG-GAATAG-TATGAGCATTTATTTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAA
64 AAT-GGAG-ATTGTTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAA
*
1172552 AAATGGTGGAAAGAAAAGCTTTTCTTGCGACA
125 AAATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * * * *
1172584 CCAAAGAATCAATGTCTTGCATCCTATTGCAGGGAATACGT-TTTTTTGAT-CCCAATCTTGAAA
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAAT--GTGTTTATAG-TGCCTAATCCTGAAA
* * * *
1172647 AGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGA
62 AGAATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AA
* * * **
1172712 AAATAGGGTAAAGAAAAGATTTCCACGC-AAA
125 AAAT-GGGGAAAGAAAAGCTTTTCTTGCGAAA
** * * *
1172743 --AAAAAATCAATATCATT-TATCCTATTGAGAAGAATGTGTTTATTGTGCGTAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* *** ** * ** * * * * * *
1172803 TGAATGAAGATAAATACCAGAATTCTTGTTTGTCCCATTTGAGGCACGAACTTAGACTTAAAAAA
63 -GAATGGAGATTGTTATGAGAA-TCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAA
* *
1172868 AATTGGTGGGAA-AAAAGCCTTTCTT----AA
126 AA-TGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * **
1172895 --GAA-C-T-AACATCGTGTATCCTAATGAGTAGACA--AGCTTATGGTGCCTAATTATGAAAAG
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGA-ATGTGTTTATAGTGCCTAATCCTGAAAAG
* * * * ** ** * *
1172953 AATAGG-GAATAG-TATGAGCATTTATTTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAA
64 AAT-GGAG-ATTGTTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAA
*
1173016 AAATGGTGGAAAGAAAAGCTTTTCTTGCGACA
125 AAATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * ** * * * * * **
1173048 TCAAAGCATCAATGTCTTGTATCGAAATGAAAGAAATGTCTTTTTTGTTCCTAATCAAGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAGAG-AATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * * * *
1173113 ATGGAGACTATTGTGAGAATCGATGCTTGTCTTATTTATGGGACGAACTTTGATTTTAAGGAAAA
65 ATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAAAA
* *** * * *
1173178 TAGGGCAAAGAAAAAAATTCCATGCAAAA
128 T-GGGGAAAGAAAAGCTTTTCTTGCGAAA
** * * * ** * *
1173207 GAAAATCATCAATATCTTTTATCTTAAAAAGGAGAATGTGCTTATCA-TGCCTAATCAT-AAATT
1 CCAAAGCATCAATATCTTGTATCCTAATGA-GAGAATGTGTTTAT-AGTGCCTAATCCTGAAA--
* * ** * * * * * * * **
1173270 GGAA-GAAGATCATTACT-AGAATCCATCTTTGTCTCATTTGCA-GTACGAACTTAGACTTTGCA
62 AGAATGGAGATTGTTA-TGAGAAT-CATGTTTGTCTTATTT-AAGGGATGAACTTTGATTTTAAA
** * * *
1173332 AAAAT-TAGCAAGAAAATGCCTTTCTTGTGAAA
124 AAAATGGGGAAAGAAAA-GCTTTTCTTGCGAAA
* *** * * * *
1173364 CCAAAACATCAATATCGCATATCTTAATGAGAAGACTATGTTTATCGCT-CCTAATCCTGAAAAG
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAG-TGCCTAATCCTGAAAAG
* * * * * *** * *
1173428 AATGGGGATTAG-T-TGAACAATTTATGCTTGGCTTATTTAATAAAAGGCAAACTTTGATTCTAT
64 AATGGAGATT-GTTATG-AGAA-TCATGTTTGTCTTATTTAA-GGGATG--AACTTTGATTTTA-
** * *
1173491 CGAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
122 AAAAAATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * * * *
1173526 CCAAAGAATCAATGTCTTGCATCCTATTGCAGGGAATACGT-TTTTTTGAT-CCCAATCTTGAAA
1 CCAAAGCATCAATATCTTGTATCCTAATG-AGAGAAT--GTGTTTATAG-TGCCTAATCCTGAAA
* * *
1173589 AGAATGGAGACTATTATGAGAATTGATGCTTT-TCTTATTTAAGGGATGAACTTTGATTTTAAGA
62 AGAATGGAGATTGTTATGAGAA-TCATG-TTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-A
* * * * ** *
1173653 AAAATAAGGTAAAGAAAAGATTTCCACGCAAAA
124 AAAAT-GGGGAAAGAAAAGCTTTTCTTGCGAAA
** * ** * *
1173686 AAAAAACATCAATATCATT-TATCCTGTTGAGGAGAATGTGTTTATTGTGCGTAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATGA-GAGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* *** ** * * * * ** * * *
1173748 TGAATGAAGATAAATACCAGAATTCTTGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAA
63 -GAATGGAGATTGTTATGAGAA-TCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAA
** * ** * ** *
1173813 AATTAGTAGGGAAAAAGCCTTTCTTAAGTAA
126 AATGGGGAAAG-AAAAGCTTTTCTTGCGAAA
* * ** * *
1173844 CCAAAGC-TCCAATATCATGTATCTTAATGAGAAGACA-AAGTTTATGGTGCCTAATCGTGAAAA
1 CCAAAGCAT-CAATATCTTGTATCCTAATGAG-AGA-ATGTGTTTATAGTGCCTAATCCTGAAAA
* * * * ** ** *
1173907 TAATAGGGAAGA--G-TACGTGTATTCATGTTTGTCTTATTTAATAGACAAACTTTGATTCGATG
63 GAAT--GG-AGATTGTTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATT---TT
* * * *
1173969 AAAAACA-GTGGAAAGAAAAGCTTTTCTTGTGATA
121 AAAAAAATGGGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * *
1174003 CCAAAGCATCAATGTCTTGTATCTTAATGA-ATGGAATGTGTTTGTGGTTCCCAATCTTGAAAAG
1 CCAAAGCATCAATATCTTGTATCCTAATGAGA--GAATGTGTTTATAGTGCCTAATCCTGAAAAG
** * *
1174067 AATGGAGATTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
64 AATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAAA
* * * *
1174132 ATAGGGCAAAGAAAAGATTTCCATGC-AAA
127 AT-GGGGAAAGAAAAGCTTTTCTTGCGAAA
** * * ** * *
1174161 AAAAATCATTAATATCATT-TGCCCTAATGAAGAGAATGTGCTTATAGTGCCGAATCAC--AAAA
1 CCAAAGCATCAATATC-TTGTATCCTAATG-AGAGAATGTGTTTATAGTGCCTAATC-CTGAAAA
* * * * * * * * * **
1174223 TGAAAGAAGATTATTACT-AGAATCCATGTTTATGTCATTTGAGGCATGAACTTAGACTTTGCAA
63 -GAATGGAGATTGTTA-TGAGAAT-CATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAA
* * * * **
1174287 AAATTGGTGGGAA-AAATGCCTTTCTTTTGAAA
124 AAAATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * ** * * ** * * *
1174319 GCAAAACATCAATATCGCGTATTCTAATGAGAAGACTAAGCTTATGGTGCCTAATCTTG-AAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
** * * * * * **
1174383 ATGG-GAAAGAGTATGTGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAA
65 ATGGAGATTG-TTATGAG-AATCATGTTTGTCTTATTTAAGGGATGAACTTTGATT-T-T-AAAA
* * * *
1174447 ACA-GTGGAAAGAAAAGCTTTTCTTACGACA
125 AAATGGGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * *
1174477 CCAAAGCATCAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCCTGAAAAGA
1 CCAAAGCATCAATATCTTGTATCCTAATGAGA-GAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * ** * *
1174542 ATGGAGACTATTGCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
65 ATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAAAA
* * * * *
1174607 TAGGGCAAAGAAAGGATTTTCATGCAAAA
128 T-GGGGAAAGAAAAGCTTTTCTTGCGAAA
** * ** * *
1174636 GAAAATCATCAATATCATT-TATTATAA-GA-AGAATGTGCTTATAGTGCCGAATCAC--AAAAT
1 CCAAAGCATCAATATC-TTGTATCCTAATGAGAGAATGTGTTTATAGTGCCTAATC-CTGAAAA-
* * * * * * * * * * **
1174696 GAATGAAGATTATTGCT-ACAATCCATATTTGTCTCATTTGAGGTACGAACTTAGACTTTGCAAA
63 GAATGGAGATTGTT-ATGAGAAT-CATGTTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAAA
* * * * **
1174760 AATTGGGGGGAA-AAATGCCTTTCTTTTGAAA
125 AAAT-GGGGAAAGAAAAGCTTTTCTTGCGAAA
* * ** * * * * *
1174791 CCAAAACATAAATATCGCGTATCCTATTGAGAAGACTATGTTTATGGTGCCTAATCCTTAAAA-A
1 CCAAAGCATCAATATCTTGTATCCTAATGAG-AGAATGTGTTTATAGTGCCTAATCCTGAAAAGA
* * * * ** * * *
1174855 ATGGGGATTAGTCTA--ACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAATTCTATCAAA
65 ATGGAGATT-GT-TATGA-GAATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAA
* * *
1174918 AACGGTGGAAAGAAAAGCTTTTCTTACGACA
126 AATGG-GGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * * *
1174949 CCAGAGCATCAATGTCTTGTATCCTAATGATG-GAAATATGTTTGTGGTTCCCAATCTTGAAAAG
1 CCAAAGCATCAATATCTTGTATCCTAATGA-GAG-AATGTGTTTATAGTGCCTAATCCTGAAAAG
* *
1175013 AATGGAGATTGTTACGAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
64 AATGGAGATTGTTATGAGAATC-ATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAAA
*
1175078 ATAGGGCAAAGAAAAG
127 AT-GGGGAAAGAAAAG
1175094 ATTTCCATGC
Statistics
Matches: 10903, Mismatches: 3748, Indels: 2195
0.65 0.22 0.13
Matches are distributed among these distances:
147 8 0.00
148 214 0.02
149 140 0.01
150 83 0.01
151 17 0.00
152 13 0.00
153 36 0.00
154 131 0.01
155 407 0.04
156 1257 0.12
157 1558 0.14
158 2604 0.24
159 3472 0.32
160 541 0.05
161 80 0.01
162 138 0.01
163 92 0.01
164 24 0.00
165 30 0.00
166 47 0.00
167 5 0.00
169 6 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (155 bp):
CCAAAGCATCAATATCTTGTATCCTAATGAGAGAATGTGTTTATAGTGCCTAATCCTGAAAAGAA
TGGAGATTGTTATGAGAATCATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAAATGG
GGAAAGAAAAGCTTTTCTTGCGAAA
Found at i:1172223 original size:160 final size:159
Alignment explanation
Indices: 1172051--1173657 Score: 430
Period size: 160 Copynumber: 10.3 Consensus size: 159
1172041 GTATTTATTT
*
1172051 TTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCG
1 TTGTCTTATTTAAAAGACAAACTTTGATTCTAACAAAAATGGTGGAAAGAAAAGCTTTTCTTGCG
* *
1172116 ACACCAAAGCATCAATGTCTTGTATCCTATTGCAG-GGAATACGTTTTTTTGAT-CCCAATCTTG
66 A-ACCAAAGAATCAATGTCTTGTATCCTATTG-AGAAGAATA-GTTTTTTTGATGCCCAATCTTG
1172179 AAAAGAATGGAGACTATTATGAGAATCGATGC
128 AAAAGAATGGAGACTATTATGAGAATCGATGC
** ** * ** * * * **
1172211 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG-GTAAAGAAAAGATTTCCACGC
1 TTGTCTTATTTAAAAGACAAACTTTGATTCTAACAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGC
** * * * ** **
1172275 -AAAAAAAAAATCAATATCATT-TATCCTATTGAGAAGAAT-GTGTTTATTG-TGCGTAATC-AC
65 GAACCAAAGAATCAATGTC-TTGTATCCTATTGAGAAGAATAGT-TTTTTTGATGCCCAATCTTG
* * ** * *
1172335 AAAATGAATGAAGA-TAAATACCAGAATTC-TTGT
128 AAAA-GAATGGAGACT-ATTATGAGAA-TCGATGC
** * * * * * * * *
1172368 TTGTCCCATTT-GAGGCACGAACTTAGACT-TAAAAAAAATTGGTGGGAA-AAAAGCCTTTCTT-
1 TTGTCTTATTTAAAAG-ACAAACTTTGATTCTAACAAAAA-TGGTGGAAAGAAAAGCTTTTCTTG
* ** * * * * * * *
1172429 --AA-GAACTAA-C-A--TCGTGTATCCTAATGAGTAGACA-AG--CTTATGGTGCCTAAT-TAT
64 CGAACCAAAGAATCAATGTCTTGTATCCTATTGAGAAGA-ATAGTTTTTTTGATGCCCAATCT-T
* * * ** **
1172483 GAAAAGAATAGG-GAATAGTATGAGCATTTATTT
127 GAAAAGAAT-GGAGACTATTATGAGAATCGATGC
*
1172516 TTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCG
1 TTGTCTTATTTAAAAGACAAACTTTGATTCTAACAAAAATGGTGGAAAGAAAAGCTTTTCTTGCG
* *
1172581 ACACCAAAGAATCAATGTCTTGCATCCTATTGCAG-GGAATACGTTTTTTTGAT-CCCAATCTTG
66 A-ACCAAAGAATCAATGTCTTGTATCCTATTG-AGAAGAATA-GTTTTTTTGATGCCCAATCTTG
1172644 AAAAGAATGGAGACTATTATGAGAATCGATGC
128 AAAAGAATGGAGACTATTATGAGAATCGATGC
** ** * ** * * * **
1172676 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG-GTAAAGAAAAGATTTCCACGC
1 TTGTCTTATTTAAAAGACAAACTTTGATTCTAACAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGC
* * * * ** **
1172740 -AA-AAAAAAATCAATATCATT-TATCCTATTGAGAAGAAT-GTGTTTATTG-TGCGTAATC-AC
65 GAACCAAAGAATCAATGTC-TTGTATCCTATTGAGAAGAATAGT-TTTTTTGATGCCCAATCTTG
* * ** * *
1172799 AAAATGAATGAAGA-TAAATACCAGAATTC-TTGT
128 AAAA-GAATGGAGACT-ATTATGAGAA-TCGATGC
** * * * * * * * *
1172832 TTGTCCCATTT-GAGGCACGAACTTAGACT-TAAAAAAAATTGGTGGGAA-AAAAGCCTTTCTT-
1 TTGTCTTATTTAAAAG-ACAAACTTTGATTCTAACAAAAA-TGGTGGAAAGAAAAGCTTTTCTTG
* ** * * * * * * *
1172893 --AA-GAACTAA-C-A--TCGTGTATCCTAATGAGTAGACA-AG--CTTATGGTGCCTAAT-TAT
64 CGAACCAAAGAATCAATGTCTTGTATCCTATTGAGAAGA-ATAGTTTTTTTGATGCCCAATCT-T
* * * ** **
1172947 GAAAAGAATAGG-GAATAGTATGAGCATTTATTT
127 GAAAAGAAT-GGAGACTATTATGAGAATCGATGC
*
1172980 TTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCG
1 TTGTCTTATTTAAAAGACAAACTTTGATTCTAACAAAAATGGTGGAAAGAAAAGCTTTTCTTGCG
* * ** * * * **
1173045 ACATCAAAGCATCAATGTCTTGTATCGAAATGA-AAGAA-ATGTCTTTTTTG-TTCCTAATCAAG
66 A-ACCAAAGAATCAATGTCTTGTATCCTATTGAGAAGAATA-GT-TTTTTTGATGCCCAATCTTG
*
1173107 AAAAGAATGGAGACTATTGTGAGAATCGATGC
128 AAAAGAATGGAGACTATTATGAGAATCGATGC
*** * * ** * *** * *
1173139 TTGTCTTATTTATGGGACGAACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAAAATTCCATGC
1 TTGTCTTATTTAAAAGACAAACTTTGATTCTAACAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGC
* ** * * * *** * ** * * * *
1173203 AAAAGAAA-ATCATCAATATCTTTTATCTTAAAAAGGAGAAT-GTGCTTATCATGCCTAATCAT-
65 GAACCAAAGA--ATCAATGTCTTGTATCCTATTGAGAAGAATAGTTTTTTTGATGCCCAATCTTG
* * *
1173265 AAATTGGAA-GAAGA-TCATTACT-AGAATCCAT-C
128 AAA--AGAATGGAGACT-ATTA-TGAGAATCGATGC
* ** * * * * * *
1173297 TTTGTCTCATTT-GCAGTACGAACTTAGACTT-T-GCAAAAAT--TAGCAAGAAAATGCCTTTCT
1 -TTGTCTTATTTAAAAG-ACAAACTTTGA-TTCTAACAAAAATGGTGGAAAGAAAA-GCTTTTCT
* * *** * * * * * * *
1173357 TGTGAAACCAAA-ACATCAATATCGCATATCTTAATGAGAAGACTA-TGTTTATCGCT-CCTAAT
62 TGCG-AACCAAAGA-ATCAATGTCTTGTATCCTATTGAGAAGAATAGT-TTTTTTGATGCCCAAT
* * * * * **
1173419 CCTGAAAAGAATGGGGATTAGT-TGAACAATTTATGC
124 CTTGAAAAGAATGGAGACTATTATG-AGAATCGATGC
* * * * *
1173455 TTGGCTTATTTAATAAAAGGCAAACTTTGATTCTATCGAAAACGGTGGAAAGAAAAGCTTTTCTT
1 TTGTCTTA-TT--TAAAAGACAAACTTTGATTCTAACAAAAATGGTGGAAAGAAAAGCTTTTCTT
* *
1173520 GCGACACCAAAGAATCAATGTCTTGCATCCTATTGCAG-GGAATACGTTTTTTTGAT-CCCAATC
63 GCGA-ACCAAAGAATCAATGTCTTGTATCCTATTG-AGAAGAATA-GTTTTTTTGATGCCCAATC
*
1173583 TTGAAAAGAATGGAGACTATTATGAGAATTGATGC
125 TTGAAAAGAATGGAGACTATTATGAGAATCGATGC
* ** ** * *
1173618 TTTTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAAT
1 TTGTCTTATTTAAAAGACAAACTTTGATTCTAACAAAAAT
1173658 AAGGTAAAGA
Statistics
Matches: 1018, Mismatches: 314, Indels: 230
0.65 0.20 0.15
Matches are distributed among these distances:
147 8 0.01
148 98 0.10
149 86 0.08
150 4 0.00
151 2 0.00
152 4 0.00
153 12 0.01
154 9 0.01
155 30 0.03
156 94 0.09
157 140 0.14
158 94 0.09
159 152 0.15
160 171 0.17
161 18 0.02
162 37 0.04
163 56 0.06
164 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (159 bp):
TTGTCTTATTTAAAAGACAAACTTTGATTCTAACAAAAATGGTGGAAAGAAAAGCTTTTCTTGCG
AACCAAAGAATCAATGTCTTGTATCCTATTGAGAAGAATAGTTTTTTTGATGCCCAATCTTGAAA
AGAATGGAGACTATTATGAGAATCGATGC
Found at i:1176180 original size:42 final size:42
Alignment explanation
Indices: 1176121--1176207 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
1176111 AAATACTGTT
1176121 CATCACTGTTCATGTATCGATACATTATGAATAGTATCGATA
1 CATCACTGTTCATGTATCGATACATTATGAATAGTATCGATA
* *
1176163 CATCACTGTTCATGTATCGATACATTGTGAATAGTATTGATA
1 CATCACTGTTCATGTATCGATACATTATGAATAGTATCGATA
1176205 CAT
1 CAT
1176208 TGAGTCCAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (42 bp):
CATCACTGTTCATGTATCGATACATTATGAATAGTATCGATA
Found at i:1176182 original size:22 final size:22
Alignment explanation
Indices: 1176121--1176187 Score: 86
Period size: 22 Copynumber: 3.1 Consensus size: 22
1176111 AAATACTGTT
1176121 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
* *
1176143 CATTA-TG--AATAGTATCGATA
1 CATCACTGTTCAT-GTATCGATA
1176163 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
1176185 CAT
1 CAT
1176188 TGTGAATAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 2 0.05
20 13 0.35
21 4 0.11
22 16 0.43
23 2 0.05
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGATA
Found at i:1176209 original size:20 final size:20
Alignment explanation
Indices: 1176134--1176209 Score: 82
Period size: 20 Copynumber: 3.7 Consensus size: 20
1176124 CACTGTTCAT
*
1176134 GTATCGATACATTATGAATA
1 GTATCGATACATTGTGAATA
**
1176154 GTATCGATACATCACTGTTCAT-
1 GTATCGATACAT---TGTGAATA
1176176 GTATCGATACATTGTGAATA
1 GTATCGATACATTGTGAATA
*
1176196 GTATTGATACATTG
1 GTATCGATACATTG
1176210 AGTCCAACGG
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
19 5 0.11
20 25 0.54
22 12 0.26
23 4 0.09
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (20 bp):
GTATCGATACATTGTGAATA
Found at i:1178295 original size:21 final size:21
Alignment explanation
Indices: 1178271--1178314 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
1178261 TAATATTCTT
* *
1178271 GAAAAGAAATTAAGTGAAGTA
1 GAAAAGAAAATAAATGAAGTA
*
1178292 GAAAAGAAAATAAATGAATTA
1 GAAAAGAAAATAAATGAAGTA
1178313 GA
1 GA
1178315 GGAGAAAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.20, T:0.18
Consensus pattern (21 bp):
GAAAAGAAAATAAATGAAGTA
Found at i:1179620 original size:21 final size:21
Alignment explanation
Indices: 1179596--1179639 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
1179586 TAATATTCTT
* *
1179596 GAAAAGAAATTAAGTGAAGTA
1 GAAAAGAAAATAAATGAAGTA
*
1179617 GAAAAGAAAATAAATGAATTA
1 GAAAAGAAAATAAATGAAGTA
1179638 GA
1 GA
1179640 GGAGAAAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.20, T:0.18
Consensus pattern (21 bp):
GAAAAGAAAATAAATGAAGTA
Found at i:1180945 original size:21 final size:21
Alignment explanation
Indices: 1180921--1180964 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
1180911 TAATATTCTT
* *
1180921 GAAAAGAAATTAAGTGAAGTA
1 GAAAAGAAAATAAATGAAGTA
*
1180942 GAAAAGAAAATAAATGAATTA
1 GAAAAGAAAATAAATGAAGTA
1180963 GA
1 GA
1180965 GGAGAAAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.20, T:0.18
Consensus pattern (21 bp):
GAAAAGAAAATAAATGAAGTA
Found at i:1183490 original size:12 final size:11
Alignment explanation
Indices: 1183468--1183543 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1183458 AGAGAAAGAA
*
1183468 GAGAGAGGAGG
1 GAGATAGGAGG
1183479 GATGATAGGAGG
1 GA-GATAGGAGG
*
1183491 AGAGACAGGA--
1 -GAGATAGGAGG
*
1183501 GAGATAGTA--
1 GAGATAGGAGG
1183510 GAGATAGGAGG
1 GAGATAGGAGG
1183521 GATGATAGGAGGG
1 GA-GATAGGA-GG
*
1183534 GAGACAGGAG
1 GAGATAGGAG
1183544 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
9 15 0.28
11 5 0.09
12 27 0.51
13 6 0.11
ACGTcount: A:0.38, C:0.03, G:0.50, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1183500 original size:24 final size:24
Alignment explanation
Indices: 1183467--1183552 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
1183457 AAGAGAAAGA
*
1183467 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1183491 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1183509 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* * *
1183533 GGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1183553 AGAGAGGAGG
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
18 11 0.23
20 2 0.04
21 6 0.12
22 2 0.04
24 27 0.56
ACGTcount: A:0.41, C:0.02, G:0.47, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1183519 original size:42 final size:42
Alignment explanation
Indices: 1183458--1183576 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
1183448 TAGCCCTCAA
* *
1183458 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1183500 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGGGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1183542 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1183577 GAGAGAAGAA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.42, C:0.03, G:0.47, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1191085 original size:15 final size:15
Alignment explanation
Indices: 1191047--1191086 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
1191037 CAAGAATACA
1191047 AAAAAAAAAAGAAAG
1 AAAAAAAAAAGAAAG
* * *
1191062 AATACAAAAAGAGAG
1 AAAAAAAAAAGAAAG
1191077 AAAAAAAAAA
1 AAAAAAAAAA
1191087 CCAGTATTTG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.82, C:0.03, G:0.12, T:0.03
Consensus pattern (15 bp):
AAAAAAAAAAGAAAG
Found at i:1191855 original size:12 final size:11
Alignment explanation
Indices: 1191833--1191908 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1191823 AGAGAAAGAA
*
1191833 GAGAGAGGAGG
1 GAGATAGGAGG
1191844 GATGATAGGAGG
1 GA-GATAGGAGG
*
1191856 AGAGACAGGA--
1 -GAGATAGGAGG
*
1191866 GAGATAGTA--
1 GAGATAGGAGG
1191875 GAGATAGGAGG
1 GAGATAGGAGG
1191886 GATGATAGGAGG
1 GA-GATAGGAGG
*
1191898 AGAGACAGGAG
1 -GAGATAGGAG
1191909 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1191865 original size:24 final size:24
Alignment explanation
Indices: 1191832--1191917 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1191822 AAGAGAAAGA
*
1191832 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1191856 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1191874 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1191898 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1191918 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1191884 original size:42 final size:42
Alignment explanation
Indices: 1191823--1191941 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
1191813 TAGCCCTCAA
* *
1191823 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1191865 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
1191907 AGAGATAATAGAGAGAGGAGGGATGACAGAAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1191942 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.44, C:0.03, G:0.45, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1197885 original size:10 final size:10
Alignment explanation
Indices: 1197866--1197896 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
1197856 ATCTCATTTT
1197866 TCACTGTTCA
1 TCACTGTTCA
*
1197876 TCACTATTCA
1 TCACTGTTCA
1197886 TCACTGTTCA
1 TCACTGTTCA
1197896 T
1 T
1197897 GTATCGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:1199133 original size:158 final size:154
Alignment explanation
Indices: 1198968--1200617 Score: 573
Period size: 159 Copynumber: 10.4 Consensus size: 154
1198958 CAAAAACGGT
** *
1198968 GGAAAGAAAAGCTTTTCTTGCGACCCCAAAGCATCAATGTCTTGTATCCTAATGAAGGAATGTGT
1 GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCTTGTATCCTAATGAAGGAATGTGT
* *
1199033 TTTTGGATCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTGTTTAGGG
66 TTTTGG-TCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGG
*
1199098 GATGAACTTTGATTTTAAGGAAAATAG
130 GACGAACTTTGATTTTAA--AAAATAG
* * * ** ** * *
1199125 GGCAAAGAAAAGATTTCCGTGTAAAAGAAAATCATCAATATCATT-TATCCTAATGAGGAGAATG
1 GG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC-TTGTATCCTAATGAAG-GAATG
* * * ** * * * * * *
1199189 TGCTTATAGTGT-CGAATC-ACAAATGAATGAAGATTATTA-GTAGAATCCG-TGTTTGGCTCAT
63 TG-TTTTTG-GTCCCAATCTTGAAAAGAATGGAGACTATTATG-AGAAT-CGATGCTTGTCTTAT
* * * *
1199250 TTGAGGCACGAACTTAGACTTTACAAAAATTAG
124 TTAAGGGACGAACTTTGATTTTA-AAAAA-TAG
* * ** * * *
1199283 AGGGAA-CAAAG-TCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCTAATATGAA-GACT
1 -GGAAAGAAAAGCT-TTTCTTGCGAAACCAAAGCATCAATATCTTGTATCCT-A-ATGAAGGAAT
* * * * * * * * *
1199345 AAT-TTTATGGTGCCTAATCATGAAAAGAATGGGGA-TGTGTATGTGTATTC-ATGTTTGTCTTA
62 -GTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGACTAT-TATGAG-AATCGATGCTTGTCTTA
* * * **
1199407 TTTAAGAGACAAACTTCGATTCTTTAAAAAACGGG
123 TTTAAGGGACGAACTTTGA-T-TTTAAAAAA-TAG
* * * *
1199442 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGTATCAATGTCTTTTATCCTAATGAAGGGAATGTG
1 GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCTTGTATCCTAATGAA-GGAATGTG
* * *
1199507 CTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTACTACGAGAATCGATGCTTGTCTTATTTAAG
65 TTTTTGG-TCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAG
** *
1199572 GGTTGAAGTTTGATTTTAAGGAAAATAG
129 GGACGAACTTTGATTTTAA--AAAATAG
* * * * ** * *
1199600 GGTAAAGAAAAGATTTGCATGCAAAAGAAAATCATCAATATCATT-TGTCCTAATGAGAAGG-AT
1 GG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC-TTGTATCCTAAT--GAAGGAAT
* ** ** * * * ** * * *
1199663 GTGTTTATAGCG-CATAATC-AAAAAATGAATGAAGA-TCAATACT-AGTATCCTTGTTTGGCTC
62 GTGTTT-TTG-GTCCCAATCTTGAAAA-GAATGGAGACT-ATTA-TGAGAATCGATGCTTGTCTT
* * * * * *
1199724 ATTTGAGGCACAAACTTAGACTTTACAAAAATTGG
122 ATTTAAGGGACGAACTTTGATTTTA-AAAAA-TAG
* * ** * * * **
1199759 TGGGAA-AAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCTAGTGAA--AACTAA
1 -GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCTTGTATCCTAATGAAGGAA-TGT
* * * * * * * * * *
1199821 GTTTATGGTGCCTAATCGTGAAAAGAATGGGGAATAGTATGAGTA-CTTATGTTTGTCTGATTTA
64 GTTTTTGGT-CCCAATCTTGAAAAGAATGGAGACTATTATGAGAATC-GATGCTTGTCTTATTTA
* * * * *
1199885 AGAGATGAAATTTGATTCTATCAAAAATGG
127 AGGGACGAACTTTGATT-T-TAAAAAATAG
* * * * * ** * * *
1199915 TGGAAAGAAAAGCTTTTCTAGTGACACCAAAGCATAAATTTCAAGTGTCCTAACGAATGGAATCT
1 -GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCTTGTATCCTAATGAA-GGAATGT
* * *
1199980 GTTTTTGGTTCCCAATCTTGAAAAAAATGGAGACTGTTATAAGAATCGATGCTTGTCTT-TTTAA
64 GTTTTTGG-TCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAA
*
1200044 GGGATGAACTTTGATTTTAAAGAAAATAG
128 GGGACGAACTTTGATTTT-AA-AAAATAG
** ** * ** *
1200073 GGCAAAGAAAAGAGTTTCACGCAAAAGAAAATCATCAATATCATT-TATCCTAAT-AAGGAGAAT
1 GG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC-TTGTATCCTAATGAA-G-GAAT
** * * ** * * * * * *
1200136 GTGTTCATAGTGCCAAT-TCACAAAATGAAT-AATGA-TCAATACT-AGAATCTATGTTTGGCTC
62 GTGTTTTTGGTCCCAATCT-TGAAAA-GAATGGA-GACT-ATTA-TGAGAATCGATGCTTGTCTT
* * * * *
1200197 AATT-CGGGCACGAACTTAGACTTTACAAAAATTGG
122 ATTTAAGGG-ACGAACTTTGATTTTA-AAAAA-TAG
* * * * * * * * * *
1200232 TGGGAA-AAAAGCCTTTCTAGCGAAAGCAAAGCATCAATATCATGCATCCTTATGAGAAGACTAT
1 -GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCTTGTATCCTAATGA-AGGAATGT
** * ** * * * * * *
1200296 GTTTACGGTGCCTAATCCCGAAAAGAATAGG-GATTAGTATGACTATTC-ATG-TCAGCCTTATT
64 GTTTTTGGT-CCCAATCTTGAAAAGAAT-GGAGACTATTATGA-GAATCGATGCT-TGTCTTATT
* * *
1200358 TAAGTGG-CAAACTTTGATTCTATCAAAAA-CG
125 TAAG-GGACGAACTTTGATT-T-TAAAAAATAG
* * * * **
1200389 GTGAAAAGTAAAGCTTGTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAAGGAATG
1 G-G-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCTTGTATCCTAATG-AAGGAATG
* ** *
1200454 TGTTTTAGGTTCAAAATCTTGAAAAGAATGCAGACTATTATGAGAATCGATGCTTGTCTTATTTA
63 TGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTA
* *
1200519 AGAGATGAACTTTGATTTTAAGTAAAATAG
127 AGGGACGAACTTTGATTTTAA--AAAATAG
* * ** * ** * *
1200549 GGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATT-TATTCTAATGAAGAGAATG
1 GG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATC-TTGTATCCTAATGAAG-GAATG
1200613 TGTTT
63 TGTTT
1200618 ATAATGCGTA
Statistics
Matches: 1059, Mismatches: 327, Indels: 212
0.66 0.20 0.13
Matches are distributed among these distances:
154 1 0.00
155 6 0.01
156 66 0.06
157 131 0.12
158 366 0.35
159 448 0.42
160 36 0.03
161 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (154 bp):
GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCTTGTATCCTAATGAAGGAATGTGT
TTTTGGTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGG
ACGAACTTTGATTTTAAAAAATAG
Found at i:1200501 original size:949 final size:946
Alignment explanation
Indices: 1198647--1201187 Score: 3244
Period size: 949 Copynumber: 2.7 Consensus size: 946
1198637 TTGAGCTAAC
* * * * *
1198647 ATAGGGCAAAGAAAAAAATTTCATGTAGAAGAAAATCATCAATATCATTTATCCTAAAGAG-GGG
1 ATAGGGCAAAG-AAAAGATTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGG
* * * * * * * *
1198711 AATGTGTTTATAGTACCTAATCATAAATTGAAAGAAGATCATTGCTAGAATCCATATTTGTCTCA
65 -ATGTGTTTATAGTGCATAATCATAAAATGAATGAAGATCAATACTAGAATCCTTGTTTGTCTCA
** * * ** *
1198776 TTCAAGGCACGAACTTAGACTTTGCAAAAATTGGTGGGAAAAATGCCTTTCTTGTGAAACCAAAA
129 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAG
* * * * *
1198841 CATCAATAT-GACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGG
194 CACCAATATCG-TGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAGAATGGG
* * * * *
1198905 GATTAGT-T-AATAATTCTTGCTTGTCTTATTTAAAAG-GCAAACTTTAATTCTATCAAAAACGG
258 GA-TAGTATGAGT-ATTCATGTTTGTCTTATTTAAGAGAG-AAACTTTGATTCTATCAAAAACGG
*
1198967 TGGAAAGAAAAGCTTTTCTTGCGACCCCAAAGCATCAATGTCTTGTATCCTAATGAAGGAATGTG
320 TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGAATGTG
* * * *
1199032 TTTTTGGATCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTGTTTAGG
385 TTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAG
* *
1199097 GGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC-CGTGTAAAAGAAAATCATC
450 GGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCAC--GCAAAAGAAAATCATC
*
1199161 AATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGTCGAATCAC-AAATGAATGAAGATTA
513 AATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTG-CCAATCACAAAATGAATGAAGATTA
* * * * *
1199225 TTAGTAGAATCCGTGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGAGGGAAC
577 TTACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * * *
1199290 AAAGTCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCTAATATGAAGACTAATTTTATGG
642 AAAGCCTTTC-TAAGAAACCAAAGCACCAATATCATGCATCCTAATATGAAGACTAATTTTACGG
* * ** ** *
1199355 TGCCTAATCATGAAAAGAATGGGGATGTGTATGTGTATTCATGTTTGTCTTATTTAAGAGACAAA
706 TGCCTAATCACGAAAAGAATAGGGATGTGTATGACTATTCATGTCAGCCTTATTTAAGAGACAAA
* * * * **
1199420 CTTCGATTCTTTAAAAAACGGGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGTATCAATGTCTT
771 CTTCGATTCTATAAAAAACGGGGAAAAGAAAAGCTTGTCTTGCGACACCAAAGCATCAATGTCAA
* * ** *
1199485 TTATCCTAATGAAGGGAATGTGCTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTACTACGAGA
836 GTATCCTAATGAAAGGAATGTGCTTTTGGTTCAAAATCTTGAAAAGAATGCAGACTACTACGAGA
* * *
1199550 ATCGATGCTTGTCTTATTTAAGGGTTGAAGTTTGATTTTAAGGAAA
901 ATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAAGGAAA
* *
1199596 ATAGGGTAAAGAAAAGATTTGCATGCAAAAGAAAATCATCAATATCATTTGTCCTAATGAGAAGG
1 ATAGGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGG
* * * *
1199661 ATGTGTTTATAGCGCATAATCAAAAAATGAATGAAGATCAATACTAGTATCCTTGTTTGGCTCAT
65 ATGTGTTTATAGTGCATAATCATAAAATGAATGAAGATCAATACTAGAATCCTTGTTTGTCTCAT
*
1199726 TTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGC
130 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGC
*
1199791 ACCAATATCGTGTATCCTAGTGA-AA-ACTAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGA
195 ACCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGG-
* *
1199854 ATAGTATGAGTACTT-ATGTTTGTCTGATTTAAGAGATGAAA-TTTGATTCTATCAAAAATGGTG
259 ATAGTATGAGTA-TTCATGTTTGTCTTATTTAAGAGA-GAAACTTTGATTCTATCAAAAACGGTG
* * * * ** * * *
1199917 GAAAGAAAAGCTTTTCTAGTGACACCAAAGCATAAATTTCAAGTGTCCTAACGAATGGAATCTGT
322 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAA-GGAATGTGT
* *
1199982 TTTTGGTTCCCAATCTTGAAAAAAATGGAGACTGTTATAAGAATCGATGCTTGTCTT-TTTAAGG
386 TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGG
1200046 GATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGAGTTTCACGCAAAAGAAAATCATCAA
451 GATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGA-TTTCACGCAAAAGAAAATCATCAA
* *
1200111 TATCATTTATCCTAATAAGGAGAATGTG-TTCATAGTGCCAATTCACAAAATGAAT-AATGATCA
515 TATCATTTATCCTAATGAGGAGAATGTGCTT-ATAGTGCCAA-TCACAAAATGAATGAA-GATTA
* * *
1200174 ATACTAGAATCTATGTTTGGCTCAATTCG-GGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
577 TTACTAGAATCCATGTTTGGCTC-ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
* * * *
1200238 AAAAGCCTTTCTAGCGAAAGCAAAGCATCAATATCATGCATCCTTATGA-GAAGACT-ATGTTTA
641 AAAAGCCTTTCTA-AGAAACCAAAGCACCAATATCATGCATCCTAAT-ATGAAGACTAAT-TTTA
* * *
1200301 CGGTGCCTAATCCCGAAAAGAATAGGGAT-TAGTATGACTATTCATGTCAGCCTTATTTAAGTGG
703 CGGTGCCTAATCACGAAAAGAATAGGGATGT-GTATGACTATTCATGTCAGCCTTATTTAAGAGA
* * * *
1200365 CAAACTTTGATTCTATCAAAAACGGTGAAAAGTAAAGCTTGTCTTGCGACACCAAAGCATCAATG
767 CAAACTTCGATTCTATAAAAAACGGGGAAAAGAAAAGCTTGTCTTGCGACACCAAAGCATCAATG
*
1200430 TCAAGTATCCTAATGAAAGGAATGTG-TTTTAGGTTCAAAATCTTGAAAAGAATGCAGACTATTA
832 TCAAGTATCCTAATGAAAGGAATGTGCTTTT-GGTTCAAAATCTTGAAAAGAATGCAGACTACTA
* *
1200494 TGAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAAGTAAA
896 CGAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAAGGAAA
* *
1200545 ATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATTCTAATGA-AGAG
1 ATAGGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGA-AG
* * * * * * *
1200609 AATGTGTTTATAATGCGTAATCATAAAATGAATGAAGATAAATAGTAGAATTCTTGTTTATCTCA
64 GATGTGTTTATAGTGCATAATCATAAAATGAATGAAGATCAATACTAGAATCCTTGTTTGTCTCA
* * *
1200674 TTTGAGGCACGAACTTAGACTTTACAGAAATTGGTGGGGAAAAAGCCTTTCTTAAGTAACCAAAG
129 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAG
* * *
1200739 CACCAATATCGTGTATCTTAATGAGAAGACAAAGTTTATGGTGGCTAATCG-G----GAA----G
194 CACCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGG
* * *
1200795 --AGTACGCGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAACGGTGGA
259 ATAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAGAAACTTTGATTCTATCAAAAACGGTGGA
* * *
1200858 AAGAAGAGCTTTTCTTGCGGCACCAAACCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTT
324 AAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAA-GGAATGTGTTT
* ** * * *
1200923 GTGGTTCCCAATCCCGAAAAGAATAGAGATTGTTACGAGAAT-GAATGCTTGTCTTATTTAAGGG
388 TTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCG-ATGCTTGTCTTATTTAAGGG
* * *
1200987 ATGAACTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGTTTTGCATGCAAAAGAAAATCATC-AT
452 ATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTT-CACGCAAAAGAAAATCATCAAT
* *
1201051 -TCATTTGTCATAATGAGGAGAATGTGCTTATAGTGCCGAATCACAAAATGAATGAAGATTATTA
516 ATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCC-AATCACAAAATGAATGAAGATTATTA
* * * *
1201115 CT-GAAATCCATATTTGTCTCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAAAA
580 CTAG-AATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAA
*
1201179 TGCCTTTCT
644 AGCCTTTCT
1201188 TTTGAATGGG
Statistics
Matches: 1385, Mismatches: 172, Indels: 81
0.85 0.11 0.05
Matches are distributed among these distances:
937 5 0.00
938 115 0.08
939 159 0.11
940 63 0.05
942 1 0.00
946 3 0.00
947 43 0.03
948 206 0.15
949 756 0.55
950 13 0.01
951 21 0.02
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (946 bp):
ATAGGGCAAAGAAAAGATTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGGA
TGTGTTTATAGTGCATAATCATAAAATGAATGAAGATCAATACTAGAATCCTTGTTTGTCTCATT
TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTAAGAAACCAAAGCA
CCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAGAATGGGGAT
AGTATGAGTATTCATGTTTGTCTTATTTAAGAGAGAAACTTTGATTCTATCAAAAACGGTGGAAA
GAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGAATGTGTTTTTG
GTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGA
ACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCACGCAAAAGAAAATCATCAATATCAT
TTATCCTAATGAGGAGAATGTGCTTATAGTGCCAATCACAAAATGAATGAAGATTATTACTAGAA
TCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTT
CTAAGAAACCAAAGCACCAATATCATGCATCCTAATATGAAGACTAATTTTACGGTGCCTAATCA
CGAAAAGAATAGGGATGTGTATGACTATTCATGTCAGCCTTATTTAAGAGACAAACTTCGATTCT
ATAAAAAACGGGGAAAAGAAAAGCTTGTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAAT
GAAAGGAATGTGCTTTTGGTTCAAAATCTTGAAAAGAATGCAGACTACTACGAGAATCGATGCTT
GTCTTATTTAAGAGATGAACTTTGATTTTAAGGAAA
Found at i:1203530 original size:33 final size:33
Alignment explanation
Indices: 1203493--1203557 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
1203483 GAGGAGAGAT
* * * *
1203493 AGGAGAGATAGTAGAGATAAAAGTGATGATAGA
1 AGGAGAGAGAATAGAGAGAAAAGGGATGATAGA
*
1203526 AGGAGAGAGAATAGAGAGATAAGGGATGATAG
1 AGGAGAGAGAATAGAGAGAAAAGGGATGATAG
1203558 GATGCGGAGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.37, T:0.15
Consensus pattern (33 bp):
AGGAGAGAGAATAGAGAGAAAAGGGATGATAGA
Found at i:1204198 original size:158 final size:158
Alignment explanation
Indices: 1203980--1206095 Score: 736
Period size: 158 Copynumber: 13.4 Consensus size: 158
1203970 AACGAAAATA
* * * * * * * * *
1203980 ATCAATATCATTTATCCTAATGAGGAGAATGTGCTTGTAGTGTCGAATCA-CAAAATGAATGAAG
1 ATCAATATCGTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAA-GAATGAAG
* * * *
1204044 ATTATTACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAACTTAG-TCTTTACAAAAATTGGTG
65 ATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTTGAT-TTTACAAAAATTGGTG
1204108 GGAAAAAAGCTTTTCTTAAGAAACCAAAGC
129 GGAAAAAAGCTTTTCTTAAGAAACCAAAGC
* * **
1204138 ACCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGA
1 ATCAATATCGTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAGAAT---GA
* * * * * * * *
1204203 AGAGTA-T-GT-GTATTCGTGTTTGTCTTATTTAAGAGGCA--AACTTTGATTCTATCAAAAA-C
63 AGATTATTACTAGAATCCATGTTTGTCTCATTT--GAGGCATGAACTTTGATTTTA-CAAAAATT
* *
1204262 GGTGGAAAGAAAAGCTTTTC-TAACGACACCAAAGC
125 GGTGGGAA-AAAAGCTTTTCTTAA-GAAACCAAAGC
* * * * * * * * *
1204297 ATCAATGT-GAAGTATGCTAACGAAAAGAATGTGTTTTTGGCT-CCCAATCTTGAAAAGAATGGA
1 ATCAATATCG-TGTATCCTAATGAGAAGAATGTGTTTATGG-TGCCTAATCATGAAAAGAATGAA
** * * * * * * * * *
1204360 GACAATTACGAGAATCGATGCTCGTCT-TTTTAAAGAATGAACTTTGATTTTA-AGGAAAATAAG
64 GATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTTGATTTTACA--AAAAT-TG
*** * * * ** *
1204423 GCAAAGAAAAAA---ATTC-CACGGAAAAGAATATC
126 G-TGGGAAAAAAGCTTTTCTTA-AGAAACCAA-AGC
* * * * * * * *
1204455 ATCAATATCATTTATCGTAATGAGGAGAAAT-TGCTTATAGTGCCAAATCA-CAAAATGAATGAA
1 ATCAATATCGTGTATCCTAATGAGAAG-AATGTGTTTATGGTGCCTAATCATGAAAA-GAATGAA
* * * * * *
1204518 GATTATTACTAGAATCCTTGTTTCTCTCATTTGAGGAATGAACTTAGACTTTGCAAAAATTGGT-
64 GATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTTGATTTTACAAAAATTGGTG
* * * *
1204582 GGAAAAATGCCTTTCTTATGAAACCAAAAC
129 GGAAAAAAGCTTTTCTTAAGAAACCAAAGC
* * *
1204612 ATCAATATCGCGTATCCTAATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGG
1 ATCAATATCGTGTATCCTAATGAGAAGAA-TGTGTTTATGGTGCCTAATCATGAAAAGAAT---G
* * * * * * * * * * *
1204676 AAGA-GAAT-GT-GTATTCATGTTTGTCTTATTTAAGAG-ATAAACTTCGATTCTATCAAAAA-C
62 AAGATTATTACTAGAATCCATGTTTGTCTCATTTGAG-GCATGAACTTTGATTTTA-CAAAAATT
** * *
1204736 GGT-GGAAAGAAAGCTTTTCTTGCGACACCATAGC
125 GGTGGGAAA-AAAGCTTTTCTTAAGAAACCAAAGC
* * * * * * * * *
1204770 ATCAATGTCTTGTATCCTAATGA-AGGGAATGTGTTTTTGGTTCCCAACCCTGAAAAGAATGGAG
1 ATCAATATCGTGTATCCTAATGAGA-AGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGAAG
* * ** * * *
1204834 ACTATTACGAGAATCGGTGCTTGTCT--TTTATAGG-ATGAACTTTGATTTTA-AGGAAAATAGG
65 ATTATTACTAGAATCCATGTTTGTCTCATTT-GAGGCATGAACTTTGATTTTACA--AAAATTGG
** * * *** ** *
1204895 T-CAAAGAAAAGATTTTCATGCTAAAGAAAATC
127 TGGGAA-AAAAGCTTTTCTTAAGAAACCAAAGC
* * * * * * * * *
1204927 ATTAATACCATTTATCCGAATGAGGATAATGTGTTTATAGTGCGC-AATCA-CAAAATGAATGAA
1 ATCAATATCGTGTATCCTAATGAGAAGAATGTGTTTATGGTGC-CTAATCATGAAAA-GAATGAA
* * * * * * * * * * *
1204990 GATCAATACTAGAATCCTTGTTTGGCTCATTAGAGGCACGAAGTTAGACTTGACAAAAATTGGTT
64 GATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTTGATTTTACAAAAATTGGTG
* *
1205055 AGAAAAAAGCCTTTCTTAAGAAACCAAAGC
129 GGAAAAAAGCTTTTCTTAAGAAACCAAAGC
* * * * ** * *
1205085 ACCAATATCATGTATCTTAAAGAGAA-AACTAAGTTTATGGTGCCTAATCGTGAAAAGAAT-AGG
1 ATCAATATCGTGTATCCTAATGAGAAGAA-TGTGTTTATGGTGCCTAATCATGAAAAGAATGA-A
* * * * * * *
1205148 GAATAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-ATGAACTTTGATTCTATCAAAAA-TG
64 GATTATTACT-AGAATCCATGTTTGTCTCATTTGAG-GCATGAACTTTGATTTTA-CAAAAATTG
* * *
1205210 GTGGAAAGAAAAGCTTTTC-TAGCGACACCAAAGC
126 GTGGGAA-AAAAGCTTTTCTTA-AGAAACCAAAGC
* * * * * * * * * * *
1205244 ATTAATGTCTTGTATCCTAATGA-AGGGAATGTGTTTTTGGTTCCCAACCCTAAAAAGAATGGAG
1 ATCAATATCGTGTATCCTAATGAGA-AGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGAAG
* ** * * *
1205308 ACTATTA-TGAGAATCGC-TACTTGTCT-TTTTGAGGGATGAACTTTGATTTTA-ATGAAAATAG
65 ATTATTACT-AGAATC-CATGTTTGTCTCATTTGAGGCATGAACTTTGATTTTACA--AAAATTG
** * * ** ** *
1205369 G-GCAAACAAAAGATTTCCTCGCA-AAAGAAAATC
126 GTGGGAA-AAAAGCTTTTCT-TAAGAAACCAAAGC
* * * * * *
1205402 ATCAATATCATTTATCCTAATGAGGAGAATGTGTTCATAGTGCCTAATCA-CAAAAGGAATGAAG
1 ATCAATATCGTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAA-GAATGAAG
* * * * * * * *
1205466 ATCAATACTAGAATCCATGTTTGGCTCATTTGAGACACGAACTTAGACTTTACAAAAATTGGAGG
65 ATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTTGATTTTACAAAAATTGGTGG
* *
1205531 GAAAGAAGCCTTTCTTAAGAAACCAAAGC
130 GAAAAAAGCTTTTCTTAAGAAACCAAAGC
* * ** * *
1205560 ACCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATAGTGCCTAATCGTGAAAAGAATGGGGA
1 ATCAATATCGTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAGAAT---GA
* * * * * * *
1205625 AGAGTA-TA-T-GTATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGATTCTATCAAAAA-C
63 AGATTATTACTAGAATCCATGTTTGTCTCATTT--GAGGCATGAACTTTGATTTTA-CAAAAATT
* *
1205684 GGT-GGAAAGAAAGTCTTTTC-TAGTGACACCAAAGC
125 GGTGGGAAA-AAAG-CTTTTCTTA-AGAAACCAAAGC
* * * * * * ** * * *
1205719 ATCAATGTCATCTATCCTAATGA-AGGGAGTGTGTTT-TAGGTTCAAAATCCT-AAAAGGAAAGG
1 ATCAATATCGTGTATCCTAATGAGA-AGAATGTGTTTAT-GGTGCCTAATCATGAAAA-GAATGA
* * * * * * *
1205781 AGACTATTACGAGAATCAATGCTTGTCTTATTT-ATGGGATGAACTTTGTTTTTA-AGTAAAA-T
63 AGATTATTACTAGAATCCATGTTTGTCTCATTTGA-GGCATGAACTTTGATTTTACA--AAAATT
* * *** * * ** *
1205843 AG-GGTAAAAAAAAATTTC-CACGCAAAAGAAAATC
125 GGTGGGAAAAAAGCTTTTCTTAAG--AAACCAAAGC
* * * * *
1205877 ATCAATATCGT-TGATCCTAATAAGGAGAATGTGCTTATAGTG-CTGAATCA-CAAAATGAATGA
1 ATCAATATCGTGT-ATCCTAATGAGAAGAATGTGTTTATGGTGCCT-AATCATGAAAA-GAATGA
* * * * * * *
1205939 GGATTATTACTAGAATACTTATTTGGT-GCATTTGAGGCATGAACTTAGAGTTTACAAAAATTGG
63 AGATTATTACTAGAATCCATGTTT-GTCTCATTTGAGGCATGAACTTTGATTTTACAAAAATTGG
* *
1206003 TAGGAAAAAAGCCTTTCTTAAGAAACCAAAGC
127 TGGGAAAAAAGCTTTTCTTAAGAAACCAAAGC
* * * ** *
1206035 ACCAATGTCGTGTAT-CTGAATGAGAAGACTAAGTTTATAGTGCCTAATCATGAAAAGAATG
1 ATCAATATCGTGTATCCT-AATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATG
1206096 GGGAAGAATA
Statistics
Matches: 1393, Mismatches: 438, Indels: 254
0.67 0.21 0.12
Matches are distributed among these distances:
154 1 0.00
155 12 0.01
156 46 0.03
157 213 0.15
158 704 0.51
159 367 0.26
160 35 0.03
161 15 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (158 bp):
ATCAATATCGTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGAAGA
TTATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTTGATTTTACAAAAATTGGTGGG
AAAAAAGCTTTTCTTAAGAAACCAAAGC
Found at i:1205490 original size:475 final size:472
Alignment explanation
Indices: 1203832--1206149 Score: 3112
Period size: 475 Copynumber: 4.9 Consensus size: 472
1203822 ATGGGTTCAA
* * * * *
1203832 GTATCCTAATGACA-GGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGTCTGTTATGAG
1 GTATCCTAATGA-AGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTACGAG
* * ** * * *
1203896 AATTGATACGCGTCTTATTGAAAGGATAAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGAT
65 AATCGATGCTTGTCTT-TT-TAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * * *
1203961 TTCCAT-TCAAACGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGCTTGTAGTGTCG
128 TTCC-TCGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCT
1204025 AATCACAAAATGAATGAAGATTATTACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAACTTAG
192 AATCACAAAATGAATGAAGATTATTACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAACTTAG
* *
1204090 TCTTTACAAAAATTGGTGGGAAAAAAGCTTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCC
257 ACTTTACAAAAATTGGT-GGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCC
*
1204155 TAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGAAGAGTATGTGTATTCGT
321 TAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGAAGAGTATGTGTATTCAT
* *
1204220 GTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTAA
386 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAG-AAAGCTTTTCTAG
* *
1204285 CGACACCAAAGCATCAATGTGAA
450 CGACACCAAAGCATCAATGTCAT
* * ** * * *
1204308 GTATGCTAACGAAAAGAATGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGACAATTACGAGA
1 GTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTACGAGA
* * * * *
1204373 ATCGATGCTCGTCTTTTTAAAGAATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAAAATT
66 ATCGATGCTTGTCTTTTT-AAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * * *
1204438 CCACGGAAAAGAATATCATCAATATCATTTATCGTAATGAGGAGAAAT-TGCTTATAGTGCCAAA
130 CCTCGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG-AATGTGCTTATAGTGCCTAA
** * *
1204502 TCACAAAATGAATGAAGATTATTACTAGAATCCTTGTTTCTCTCATTTGAGGAATGAACTTAGAC
194 TCACAAAATGAATGAAGATTATTACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAACTTAGAC
* * * * * *
1204567 TTTGCAAAAATTGGTGGAAAAATGCCTTTCTTATGAAACCAAAACATCAATATCGCGTATCCTAA
259 TTTACAAAAATTGGTGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCTAA
* * * * *
1204632 TGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGAAGAGAATGTGTATTCATGTT
324 TGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGAAGAGTATGTGTATTCATGTT
* * *
1204697 TGTCTTATTTAAGAGATAAACTTCGATTCTATCAAAAACGGTGGAAAGAAAGCTTTTCTTGCGAC
389 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAGCTTTTCTAGCGAC
* *
1204762 ACCATAGCATCAATGTCTT
454 ACCAAAGCATCAATGTCAT
*
1204781 GTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAACCCTGAAAAGAATGGAGACTATTACGAGA
1 GTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTACGAGA
* *
1204846 ATCGGTGCTTGTC-TTTTATAGGATGAACTTTGATTTTAAGGAAAATAGGTCAAAGAAAAGATTT
66 ATCGATGCTTGTCTTTTTA-AGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-TT
* * * * * * *
1204910 TCAT-GCTAAAGAAAATCATTAATACCATTTATCCGAATGAGGATAATGTGTTTATAGTGCGC-A
129 TCCTCGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGC-CTA
* * * *
1204973 ATCACAAAATGAATGAAGATCAATACTAGAATCCTTGTTTGGCTCATTAGAGGCACGAAGTTAGA
193 ATCACAAAATGAATGAAGATTATTACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAACTTAGA
* * * *
1205038 CTTGACAAAAATTGGTTAGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCATGTATCTT
258 CTTTACAAAAATTGG-TGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCT
* * * * * *
1205103 AAAGAGAAAACTAAGTTTATGGTGCCTAATCGTGAAAAGAATAGGGAATAGTATGAGTATTCATG
322 AATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGAAGAGTATGTGTATTCATG
** *
1205168 TTTGTCTTATTTAAGAGATGAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTAGC
387 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAG-AAAGCTTTTCTAGC
* *
1205233 GACACCAAAGCATTAATGTCTT
451 GACACCAAAGCATCAATGTCAT
* * *
1205255 GTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAACCCTAAAAAGAATGGAGACTATTATGAGA
1 GTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTACGAGA
* * * * *
1205320 ATCGCTACTTGTCTTTTTGAGGGATGAACTTTGATTTTAATGAAAATAGGGCAAACAAAAGATTT
66 ATCGATGCTTGTCTTTTT-AAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
1205385 CCTCGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTCATAGTGCCTAA
130 CCTCGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTT-ATAGTGCCTAA
* * * * *
1205449 TCACAAAAGGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGACACGAACTTAGAC
194 TCACAAAATGAATGAAGATTATTACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAACTTAGAC
* *
1205514 TTTACAAAAATTGGAGGGAAAGAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCTA
259 TTTACAAAAATTGG-TGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCTA
* * *
1205579 ATGAGAAGACTAAGTTTATAGTGCCTAATCGTGAAAAGAATGGGGAAGAGTATATGTATTCATGT
323 ATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGAAGAGTATGTGTATTCATGT
*
1205644 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAGTCTTTTCTAGTG
388 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAG-CTTTTCTAGCG
1205709 ACACCAAAGCATCAATGTCAT
452 ACACCAAAGCATCAATGTCAT
* * * ** *
1205730 CTATCCTAATGAAGGGAGTGTGTTTTAGGTTCAAAATCCT-AAAAGGAAAGGAGACTATTACGAG
1 GTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAA-GAATGGAGACTATTACGAG
* * * * * *
1205794 AATCAATGCTTGTCTTATTTATGGGATGAACTTTGTTTTTAAGTAAAATAGGGTAAA-AAAAAAT
65 AATCGATGCTTGTCTT-TTTA-AGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * *
1205858 TTCCACGCAAAAGAAAATCATCAATATCGTTGATCCTAATAAGGAGAATGTGCTTATAGTG-CTG
128 TTCCTCGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCT-
* * * *
1205922 AATCACAAAATGAATGAGGATTATTACTAGAATACTTATTTGG-TGCATTTGAGGCATGAACTTA
192 AATCACAAAATGAATGAAGATTATTACTAGAATCCTTGTTTGGCT-CATTTGAGGCACGAACTTA
* *
1205986 GAGTTTACAAAAATTGGTAGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATGTCGTGTAT-
256 GACTTTACAAAAATTGGT-GGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATC
* *
1206050 CTGAATGAGAAGACTAAGTTTATAGTGCCTAATCATGAAAAGAATGGGGAAGAATATGTGTATTC
320 CT-AATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGAAGAGTATGTGTATTC
* *
1206115 ATGTTTGTCTTATTTAACAAACAAACTTTGATTCT
384 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
1206150 GAAATGAATA
Statistics
Matches: 1629, Mismatches: 189, Indels: 49
0.87 0.10 0.03
Matches are distributed among these distances:
471 4 0.00
472 156 0.10
473 249 0.15
474 276 0.17
475 838 0.51
476 106 0.07
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (472 bp):
GTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTATTACGAGA
ATCGATGCTTGTCTTTTTAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
CTCGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC
ACAAAATGAATGAAGATTATTACTAGAATCCTTGTTTGGCTCATTTGAGGCACGAACTTAGACTT
TACAAAAATTGGTGGAAAAAAGCCTTTCTTAAGAAACCAAAGCACCAATATCGTGTATCCTAATG
AGAAGACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGAAGAGTATGTGTATTCATGTTTG
TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAGCTTTTCTAGCGACAC
CAAAGCATCAATGTCAT
Found at i:1206802 original size:706 final size:712
Alignment explanation
Indices: 1205438--1206853 Score: 1725
Period size: 706 Copynumber: 2.0 Consensus size: 712
1205428 GAATGTGTTC
* * * *
1205438 ATAGTGCCTAATCACAAAAGGAATGAAGATCAATACTAGAATCCATGTTTGGCTCATTTGAGACA
1 ATAGTGCCTAATCACAAAAGGAAAGAAGATCAATACAAGAATCAATGTTTGCCTCATTTGAGACA
** * *
1205503 CGAACTTAGACTTTACAAAAATTGGAGGGAAAGAAGCCTTTCTTAAGAAACCAAAGCACCAATAT
66 CGAACTTAGACTTTACAAAAATTGGAAAGAAAGAAGACTTACTTAAGAAACCAAAGCACCAATAT
* * * * * *
1205568 CGTGTATCCTAATGAGAAGACTAAGTTTATAGTGCCTAATCGTGAAAAGAATGGGGAAGAGTATA
131 CATGTATCCTAATGAGAAGACTAAGTTTACAATACCTAATCCTGAAAAGAATAGGGAAGAGTATA
* *
1205633 TGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAGT
196 TGTATTCATGATTGTCTTATTTAAGAGACAAACTATGATTCTAT---AAA--GT-G-AAGAAAGT
*
1205698 CTTTTCTAGTGACACCAAAGCATCAATGTCATCTATCCTAATGAAGGGAGTGTGTTTTAGGTTCA
254 CTTTTCTAGTGACACCAAAGCATCAATGTCATCTATCCTAATGAAGGGAATGTGTTTTAGGTTCA
* * * * *
1205763 AAATCCTAAAAGGAAAGGAGACTATTACGAGAATCAATGCTTGTCTTATTTATGGGATGAACTTT
319 AAATCCTAAAAAGAAAGGAGACTATTACGAAAATCAATGCTTATCTTATTTAAGGGATGAACATT
* * * * *
1205828 GTTTTTAAGTAAAATAGGGTAAAAAAAAATTTCCACGCAAAAGAAAATCATCAATATCGTTGATC
384 GATTTTAAGTAAAATAGGGCAAAAAAAAAATTCCACGCAAAAGAAAATCATCAAAATCATTGATC
* * * ** *
1205893 CTAATAAGGAGAATGTGCTTATAGTGCTGAATCACAAAATGAATGAGGATTATTACTAGAATACT
449 CTAATAAGGAGAATGTGCTTATAATGCTGAATCACAAAATGAAAGAAGACCATTACTAGAATACA
* * *
1205958 TATTTGGTGCATTTGAGGCATGAACTTAGAGTTTACAAAAATTGGTAGGAAAAAAGCCTTTCTTA
514 TATTTGGTGCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTAGGAAAAAAGCCTTTCTTA
* * *
1206023 AGAAACCAAAGCACCAATGTCGTGTATCTGAATGAGAAGACTAAGTTTATAGTGCCTAATCATGA
579 AGAAACCAAAGCACCAATATCGTGTATCTGAATGAGAAGACTAACTTTATAGTACCTAATCATGA
* *
1206088 AAAGAATGGGGAAGAATATGTGTATTCATGTTTGTCTTATTTAACAAACAAACTTTGATTCTGAA
644 AAAGAATGGGGAAGAATATGAGTATTCATGTTTGTCTTATTCAACAAACAAACTTTGATTCTGAA
1206153 ATGA
709 ATGA
* * * * *
1206157 ATAGTGCCTAATCATAAAATGAAAGAGGATCAATACAAGAATCAATGTTTGCCTCATTTGAGGCT
1 ATAGTGCCTAATCACAAAAGGAAAGAAGATCAATACAAGAATCAATGTTTGCCTCATTTGAGACA
** *
1206222 CGAACTTAGACTTTACAAAAATTGGTAAAGAAA-AAGACTTACTTGCGAAA-CAAAGCATCAATA
66 CGAACTTAGACTTTACAAAAATTGG-AAAGAAAGAAGACTTACTTAAGAAACCAAAGCACCAATA
* * * ** *
1206285 TCATGTATCCTATTGAGAAGACTATGTTTACAATACGTAATCCT-AGAAAGAATAGGGATTATTA
130 TCATGTATCCTAATGAGAAGACTAAGTTTACAATACCTAATCCTGA-AAAGAATAGGGAAGAGTA
*
1206349 TGA-GTATTCATGATTGTCTTATTTAAGAGACAAACTATGATTCT-T-TA-T-AA-AAAG-CTTT
194 T-ATGTATTCATGATTGTCTTATTTAAGAGACAAACTATGATTCTATAAAGTGAAGAAAGTCTTT
* * * **
1206407 TCTTA-TGACACCAAAGCATTAATGTCA-CGTGTCCTAATGATGGGAATGTGTTTTAGGTTCCCA
258 TC-TAGTGACACCAAAGCATCAATGTCATC-TATCCTAATGAAGGGAATGTGTTTTAGGTTCAAA
* * * *
1206470 ATCCTAAAAAGAATGGAGACTGTTACGAAAATCGATGCTTATGTTATTTAAGGGATGAACATTGA
321 ATCCTAAAAAGAAAGGAGACTATTACGAAAATCAATGCTTATCTTATTTAAGGGATGAACATTGA
* *
1206535 TTTTAA-TGAAAATAGGGCAAAGAAAAAAATTCCATGCAAAAGAAAATCATCAAAATCATTTATC
386 TTTTAAGT-AAAATAGGGCAAA-AAAAAAATTCCACGCAAAAGAAAATCATCAAAATCATTGATC
* * * * *
1206599 CTAATGAGGAGAATGTGCTTCTAATGCCT-AATTATAAAATGAAAGAAGACCATTACTAGAATCC
449 CTAATAAGGAGAATGTGCTTATAATG-CTGAATCACAAAATGAAAGAAGACCATTACTAGAATAC
* * * * * *
1206663 ATGTTT-GTCTCATTTGAGGCACGAACTTAGACTTTACAAAACCTGGTGGGGAAATAGCCTTTCT
513 ATATTTGGT-GCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTAGGAAAAAAGCCTTTCT
** * * * * *
1206727 TGCGAAACCAAAGCATCAATATCGTGTATCCT-AAT-AGGAGGACTATCTTTATGGTACCTAGTC
577 TAAGAAACCAAAGCACCAATATCGTGTAT-CTGAATGA-GAAGACTAACTTTATAGTACCTAATC
** * * *
1206790 -TAGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTATTCAAGAGACAAACTTTGATT
640 AT-GAAAAGAATGGGGAAGAATATGAGTATTCATGTTTGTCTTATTCAACAAACAAACTTTGATT
1206854 TTATCAAAAA
Statistics
Matches: 595, Mismatches: 90, Indels: 37
0.82 0.12 0.05
Matches are distributed among these distances:
704 2 0.00
705 133 0.22
706 248 0.42
707 6 0.01
710 1 0.00
713 1 0.00
717 2 0.00
718 102 0.17
719 95 0.16
720 5 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (712 bp):
ATAGTGCCTAATCACAAAAGGAAAGAAGATCAATACAAGAATCAATGTTTGCCTCATTTGAGACA
CGAACTTAGACTTTACAAAAATTGGAAAGAAAGAAGACTTACTTAAGAAACCAAAGCACCAATAT
CATGTATCCTAATGAGAAGACTAAGTTTACAATACCTAATCCTGAAAAGAATAGGGAAGAGTATA
TGTATTCATGATTGTCTTATTTAAGAGACAAACTATGATTCTATAAAGTGAAGAAAGTCTTTTCT
AGTGACACCAAAGCATCAATGTCATCTATCCTAATGAAGGGAATGTGTTTTAGGTTCAAAATCCT
AAAAAGAAAGGAGACTATTACGAAAATCAATGCTTATCTTATTTAAGGGATGAACATTGATTTTA
AGTAAAATAGGGCAAAAAAAAAATTCCACGCAAAAGAAAATCATCAAAATCATTGATCCTAATAA
GGAGAATGTGCTTATAATGCTGAATCACAAAATGAAAGAAGACCATTACTAGAATACATATTTGG
TGCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTAGGAAAAAAGCCTTTCTTAAGAAACC
AAAGCACCAATATCGTGTATCTGAATGAGAAGACTAACTTTATAGTACCTAATCATGAAAAGAAT
GGGGAAGAATATGAGTATTCATGTTTGTCTTATTCAACAAACAAACTTTGATTCTGAAATGA
Found at i:1207104 original size:475 final size:476
Alignment explanation
Indices: 1206398--1210532 Score: 5572
Period size: 475 Copynumber: 8.8 Consensus size: 476
1206388 ATTCTTTATA
** * * * *
1206398 AAAAGCTTTTCTTATGACACCAAAGCATTAATGTCACGTGTCCTAATGATGGGAATGTGTTTTAG
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG
* * * * * *
1206463 GTTCCCAATCCTAAAAAGAATGGAGACTGTTACGAAAATCGATGCTTATGTTATTTAAGGGATGA
66 TTTCCCAATCCTGAAAAGAATGGGGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * *
1206528 ACATTGATTTTAATGAAAATAGGGCAAAGAAAAAAATTCCATGCAAAAGAAAATCATCAAAATCA
131 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCA
* * * * *
1206593 TTTATCCTAATGAGGAGAATGTGCTTCTAATGCCTAATTATAAAATGAAAGAAGACCATTACTAG
196 TTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACAAG
** * *
1206658 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAACCTGGTGGGGAAATAGCCT
261 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCT
* * *
1206723 TTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAGGAGGACTATCTTTATGGTACCTAG
326 TTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAGGAAGACTATGTTTATGGTACCTAA
*
1206788 T-CTAGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTATTCAAGAGACAAACTTTGA
391 TCCTA-AAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
*
1206852 TTTTATCAAAAACAGG-GGAAAG
455 TTCTAT-AAAAACAGGTGGAAAG
*
1206874 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTAG
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG
* *
1206939 TTTCCCAATCCTGAAAATAATGGGGACTGTTACGAGAATCGATACTTGTCTTATTTAAGGG-TGA
66 TTTCCCAATCCTGAAAAGAATGGGGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
1207003 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCA
131 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCA
**
1207068 TTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAAAGTTGATCATTACAAG
196 TTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACAAG
* * *
1207133 AATCAATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAGAATTGGTAGGGAAAAAGCCT
261 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCT
* ***
1207198 TTCTTGTGAAA-CAAAGCATCAATATCGTGTATCCTAAT-GAGAAGACTATGTTTACAATACCTA
326 TTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAG-GAAGACTATGTTTATGGTACCTA
* * * *
1207261 ATCCCAAAAAGAATGGGGATTATTATGAGTATTTA-GCATTGTCTTATTTAAGAGACAAACTTTG
390 ATCCTAAAAAGAATGGGGATTACTATGAGTATTCATG-TTTGTCTTATTTAAGAGACAAACTTTG
* *
1207325 ATTCTTTATAAAA-AGGTGGAAGG
454 ATTCTATA-AAAACAGGTGGAAAG
* * *
1207348 AAAAGCTTTTCTTGTG--ACCACAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTAG
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG
* * * *
1207411 GTT-CCAATCTTGAAAAGAAT--GGA--G--AC-----T-G-T--TAGTCTTATTTAAGAGATGA
66 TTTCCCAATCCTGAAAAGAATGGGGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * *
1207460 ACTTTGATTTTGAGGAAAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCACCAGTATCA
131 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCA
* * *
1207525 TTTATCCTAATGAGGAGAATGTGCTTATAATACCTAATCATAAAATGAAAGAAGATCATTACTAG
196 TTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACAAG
*
1207590 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCT
261 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCT
* * *
1207655 TTCTTGCAAAACCAAAGCATCAATATCATGTGTCCTAAT-GAGAAGACTATGTTTATGGTACCTA
326 TTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAG-GAAGACTATGTTTATGGTACCTA
* * * *
1207719 ATCCTAAAAGGAAT-AGGATTACTATGAGTATTTATGTTTGTCTTATTTAAGAGACAAACTTTTA
390 ATCCTAAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
*
1207783 TTCTATCAAAAACA-ATGGAAAG
455 TTCTAT-AAAAACAGGTGGAAAG
* *
1207805 AAAAGCTTTTCTTGTGACAACAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG
* * * *
1207870 TTTTCCAATCCTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATTA
66 TTTCCCAATCCTGAAAAGAATGGGGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * *
1207935 ATTTTAAATTTAAGAAAAATAGGGCAAAGAGAAA-AATTCCATGCAAAAGAAAATCATCAATATC
131 ACTTTGATTTTAAGGAAAATAGGGCAAAGA-AAAGAATTCCATGCAAAAGAAAATCATCAATATC
* * * * *
1207999 GTTTATGCTAATGAGGAGAATGTGCTTATAATGCCTAATCATAAAATGAAAGAAAATCTTTA-AT
195 ATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACA-
* * * *
1208063 AGAACCCATGTTTGTCTCATTTGAGGTACGAACTTAGACTTTACAAAAACTGGTGGGGAAAAAGC
259 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGC
* * * * *
1208128 TTTTTTTGCGAAACAAAAGCATTAATATCGTGTATCCTAATAGGAAGACTATGTTTATGGTGCCT
324 CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAGGAAGACTATGTTTATGGTACCT
* * * *
1208193 AATCCTGAAAAGAATGGGGATTACTATGAGTATTCAT-TTTGTCCTATTTAAGAGATAAATTTTG
389 AATCCTAAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
*
1208257 ATTCTATTAAAAA-TGGTGGAAAG
454 ATTCTA-TAAAAACAGGTGGAAAG
* * *
1208280 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGTATGCGTTTTAG
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG
* * * * * *
1208345 TTTCCCAATCCTAAAAAGGATGGGGACTATTACGAGAATCGATGCTTATCTTAGTTAAGGGATTA
66 TTTCCCAATCCTGAAAAGAATGGGGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
*
1208410 ACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGAATAT-CATGCAAAAGAAAATCATCAATATC
131 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAAT-TCCATGCAAAAGAAAATCATCAATATC
* *
1208474 ATTTATCGTAATGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAAAGAAGATCTTTACAA
195 ATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACAA
* * * *
1208539 GAATCAATGTTTGTCTCATTTGAGGCACGAACTCAGACTTTACAAAAATTAGCAGGGAAAAAGCC
260 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCC
* * * ***
1208604 TTTCGTGGGAAA-CAAAGCATCAATATCATGTATCCT-A-A-G-AGACTATGTTTACAATACCTA
325 TTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAGGAAGACTATGTTTATGGTACCTA
* * * *
1208664 ATCCTAAAAAGAATGTGGATTATTATGAGTATTCATGATTGTCTTATTTAAGAGACAAACTTTTA
390 ATCCTAAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* *
1208729 TTCTTTATAAAAC-GGTGAAAAG
455 TTCTATA-AAAACAGGTGGAAAG
* * * *
1208751 AAAAGCTTTTCTTACAACACCAAAGCATCAATGTCCTGTATCCTAATGAAAGGAATGTGTTTTAG
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG
* * * * *
1208816 GTTCCCAATCCTGAAAAGAATGGAGACAGTTACAAGAATTGATGCTTGTCTTATTTAAGGGATGA
66 TTTCCCAATCCTGAAAAGAATGGGGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* *
1208881 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTCCATGCAAAGGAAAATTATCAATATCA
131 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCA
* *
1208946 TTTATCCTAATGA-G-G-A---GCTTATAGTGCCTAATCATAAAATGAAAAAAGATCATTACAGG
196 TTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACAAG
*
1209005 AATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCT
261 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCT
* *
1209070 TTCTTGCGAAACCAAATCATCAATATCGTGTATCCTAATAGGAAGACTATGTTTATGGTGCCTAA
326 TTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAGGAAGACTATGTTTATGGTACCTAA
1209135 TCCT---AA-AAT---GATTACTATGAGTATTCATG-TTGTCTTATTTAAGAGACAAACTTTGAT
391 TCCTAAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
1209192 TCTATCAAAAAC-GGTGGAAAG
456 TCTAT-AAAAACAGGTGGAAAG
* * *
1209213 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGAAATGTGTTTTAG
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG
* * * * *
1209278 TTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCAATGCTTGTCTTATTTAAGGAATTA
66 TTTCCCAATCCTGAAAAGAATGGGGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * *
1209343 ACATTT-ATTTTACGGAAAAATAAGGCAAAGAAAAGAATTCTATGCAAAAGAATATCATCAATAT
131 AC-TTTGATTTTAAGG-AAAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATAT
* * * * *
1209407 CATTTATCCTATTGAGTAGAATGTGCTTATAATGCCTAATCATAAAATGAAAGAAAATCTTTA-A
194 CATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACA
* * * *
1209471 TAGAACCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAACTGGTGGGGAAAAAG
259 -AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGGAAAAAG
* * * * * *
1209536 CTTTTTTTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAGGATGACTATGTTTATGGTGC
323 C-CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAGGAAGACTATGTTTATGGTAC
* * * *
1209601 CTAATCCTGAAAAGAATGGCGATTACTATGAGTATTCA-CTTTGTCCTT-TTTAAGAGATAAACT
387 CTAATCCTAAAAAGAATGGGGATTACTATGAGTATTCATGTTTGT-CTTATTTAAGAGACAAACT
1209664 TTGATTCTATTAAAAAC-GGTGGAAAG
451 TTGATTCTA-TAAAAACAGGTGGAAAG
* ** * * *
1209690 AAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTGTTGAAGGGTATGCGTTATAG
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG
* *
1209755 TTTCCCAATCCTGAAAAGAATGGGGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATTA
66 TTTCCCAATCCTGAAAAGAATGGGGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * *
1209820 ACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGAATTTCATGCAAAAGAAAATCATCAATTTCA
131 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCA
* *
1209885 TTTATCCTAATGAGGAGAATGTGCTTATAGTGCGTAATCATAAAATGAAAGAAGATCTTTACAAG
196 TTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACAAG
* * * *
1209950 AATCAATGTTTGTCTCATTCGAGGCACGGACTTAGACTTTACAAAAATTGGCAGGGAAAAAGCCT
261 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCT
* * ***
1210015 TTCGTGC-AAAACAAAGCATCAATATCGTGTATCCTAATGAGG-AGACTATGTTTACAATACCTA
326 TTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAAT-AGGAAGACTATGTTTATGGTACCTA
* * * * * * *
1210078 ATCCTAAAAAGAATGTGGATTATTATAAGTATTCATGATTGTCTTATTTAGGTGATAAACTTTGA
390 ATCCTAAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
1210143 TTCTTTATAAAATA-ATGGAAAG
455 TTCTATA-AAAACAGGTGGAAAG
* *
1210165 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAATGTGTTTTAG
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG
* * * *
1210230 GTTCTCAATCCTGAAAAGAA-GGGAGACTGCTACGAGAGTCGATGCTTGTCTTATTTAAGGGATG
66 TTTCCCAATCCTGAAAAGAATGGG-GACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* *
1210294 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATAATTCCATGCAAAAAAAAAAT-ATCAATAT
130 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTCCATGC-AAAAGAAAATCATCAATAT
* *
1210358 CATTTATCCTAGTGA-G-G-A---GCTTATAGTGCCTAATCCTAAAATGAAAGAAGATC---ACA
194 CATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACA
*
1210414 AGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGC
259 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGC
* * *
1210479 TTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATAGGAAGAATATGT
324 CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAGGAAGACTATGT
1210533 GTTAGGATTG
Statistics
Matches: 3234, Mismatches: 347, Indels: 165
0.86 0.09 0.04
Matches are distributed among these distances:
456 14 0.00
457 270 0.08
458 63 0.02
459 47 0.01
460 17 0.01
462 171 0.05
463 80 0.02
465 112 0.03
466 101 0.03
467 42 0.01
468 3 0.00
469 132 0.04
470 141 0.04
471 240 0.07
472 49 0.02
473 11 0.00
474 238 0.07
475 1004 0.31
476 306 0.09
477 189 0.06
478 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG
TTTCCCAATCCTGAAAAGAATGGGGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCA
TTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACAAG
AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGGAAAAAGCCT
TTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAGGAAGACTATGTTTATGGTACCTAA
TCCTAAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
TCTATAAAAACAGGTGGAAAG
Found at i:1207146 original size:158 final size:156
Alignment explanation
Indices: 1206398--1210528 Score: 1406
Period size: 159 Copynumber: 26.4 Consensus size: 156
1206388 ATTCTTTATA
*** * * * * * *
1206398 AAAAGCTTTTCTTATGACACCAAAGCATTAATGTCACGTGTCCTAATGATGG-GAATGTG-TTTT
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGA-GGAGAATGTGCTTAT
* * * * * * * * *
1206461 AGGTTCCCAATCCTAAAAAGAATGGAGA-CTGTTACGAAAATCGATGCTTATGTTATTTAAGGGA
65 A-GTGCCTAATCCTAAAATGAAAGGAGATC-ATTACGAGAATC-ATGTTTGTCTTATTTAA-GGA
*
1206525 TGAACATTGATTTTAATGAAAATAGGGCAAAG
126 TGAACTTTGATTTTAA-GAAAATAGGGCAAAG
*** * * ** * * * *
1206557 AAAAAAATTCCATGCAAAAGAAAATCATCAAAATCATTTATCCTAATGAGGAGAATGTGCTTCTA
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATA
* ** * * * * * *
1206622 ATGCCTAATTATAAAATGAAAGAAGACCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
66 GTGCCTAATCCTAAAATGAAAGGAGATCATTACGAGAAT-CATGTTTGTCTTATTTAAGG-ATGA
* * * *** ****
1206687 ACTTAGACTTT-ACAAAACCTGGTGGGG
129 ACTTTGATTTTAAGAAAATAGGGCAAAG
* * * * *
1206714 AAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAAT-AGGAGGACTAT-CTTT
1 AAA-AGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGA-GAATGTGC-TT
* * * * * * * * * * *
1206777 ATGGTACCTAGT-CTAGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTATTCAAGAG
63 ATAGTGCCTAATCCTA-AAATGAAAGGAGATCATTACGAG-AATCATGTTTGTCTTATTTAAG-G
** * *
1206841 ACAAACTTTGATTTTATCA-AAAACAGGGGAAAG
125 ATGAACTTTGATTTTA--AGAAAATAGGGCAAAG
* * * * *
1206874 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGG-GAATGTG-TTTT
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGCTTAT
* * * * * ** *
1206937 AGTTTCCCAATCCTGAAAAT-AATGGGGA-CTGTTACGAGAATCGATACTTGTCTTATTTAAGGG
65 AG-TGCCTAATCCT-AAAATGAAAGGAGATC-ATTACGAGAATC-ATGTTTGTCTTATTTAAGGA
1207000 TGAACTTTGATTTTAAGGAAAATAGGGCAAAG
126 TGAACTTTGATTTTAA-GAAAATAGGGCAAAG
** * * ** * *
1207032 AAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATA
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATA
* ** * * * **
1207097 GTGCCTAATCATAAAATGAAAGTTGATCATTACAAGAATCAATGTTTGTCTCATTTGAGGCACAA
66 GTGCCTAATCCTAAAATGAAAGGAGATCATTACGAGAATC-ATGTTTGTCTTATTTAAGG-ATGA
* * * * * **
1207162 ACTTAGACTTTACA-AGAAT-TGGTAGGG
129 ACTTTGATTTTA-AGAAAATAGGGCAAAG
* ** * * * * * *
1207189 AAAAAGCCTTTCTTGTGAAA-CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTAC
1 -AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTAT
* * * * * * * * * * * *
1207253 AATACCTAATCCCAAAAAGAATGGGGATTATTATGAGTAT-TTAGCATTGTCTTATTTAAGAGAC
65 AGTGCCTAATCCTAAAATGAAAGGAGATCATTACGAGAATCAT-G-TTTGTCTTATTTAAG-GAT
* * * * *
1207317 AAACTTTGATTCTTTATAAAA-AGGTGGAAGG
127 GAACTTTGATT-TTAAGAAAATAGG-GCAAAG
** * * * *
1207348 AAAAGCTTTTCTTG--TGACCACAGCATCAATGTCATGTATCCTAATGAAGG-GAATATG-TTTT
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGCTTAT
* * *
1207409 AGGTTCC-AAT-CT----TGAAA--AGA--A-T-GGAG-A-C-TGTTAGTCTTATTTAAGAGATG
65 A-GTGCCTAATCCTAAAATGAAAGGAGATCATTACGAGAATCATGTTTGTCTTATTTAAG-GATG
*
1207459 AACTTTGATTTTGAGGAAAATAGGGCAAAG
128 AACTTTGATTTT-AAGAAAATAGGGCAAAG
** * * ** * * * *
1207489 AAAAGAATTCCATGCAAAAGAAAATCACCAGTATCATTTATCCTAATGAGGAGAATGTGCTTATA
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATA
* * * * * * * *
1207554 ATACCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
66 GTGCCTAATCCTAAAATGAAAGGAGATCATTACGAGAAT-CATGTTTGTCTTATTTAAGG-ATGA
* * * ***
1207619 ACTTAGACTTTACA-AAAATTGGTGGGGA-
129 ACTTTGATTTTA-AGAAAATAGG-GCAAAG
* * * * * * *
1207647 AAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTGTCCTAATGAGAAGACTATGTTTATG
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATA
* * * * * * * **
1207712 GTACCTAATCCTAAAAGGAATA-G-GATTACTATGAGTATTTATGTTTGTCTTATTTAAGAGACA
66 GTGCCTAATCCTAAAATGAA-AGGAGATCATTACGAG-AATCATGTTTGTCTTATTTAAG-GATG
* *
1207775 AACTTTTATTCTATCAA-AAACA-ATGG-AAAG
128 AACTTTGATT-T-T-AAGAAA-ATAGGGCAAAG
* * * *
1207805 AAAAGCTTTTCTTGTGACAA-CAAAGCATCAATGTCATGTATCCTAATGAAGG-GAATGTG-TTT
1 AAAAGCTTTTCTTG-CAAAACCAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGCTTA
* * *
1207867 TAGTTTTCC-AATCCTGAAAA-GAATGGAGA-CTATTACGAGAATCGATGCTTGTCTTATTTAAG
64 TAG--TGCCTAATCCT-AAAATGAAAGGAGATC-ATTACGAGAATC-ATGTTTGTCTTATTTAA-
* * * *
1207929 GGATTAATTTTAAATTTAAGAAAAATAGGGCAAAG
123 GGATGAACTTTGATTTTAAG-AAAATAGGGCAAAG
** * * ** * * * *
1207964 AGAAA-AATTCCATGCAAAAGAAAATCATCAATATCGTTTATGCTAATGAGGAGAATGTGCTTAT
1 A-AAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTAT
* * * * * ** * * * *
1208028 AATGCCTAATCATAAAATGAAAGAAAATCTTTAATAGAACCCATGTTTGTCTCATTTGAGGTACG
65 AGTGCCTAATCCTAAAATGAAAGGAGATCATTACGAGAA-TCATGTTTGTCTTATTTAAGG-ATG
* * ***
1208093 AACTTAGACTTTACA-AAAACT-GGTGGGGA-
128 AACTTTGATTTTA-AGAAAA-TAGG-GCAAAG
* * * * * * * *
1208122 AAAAGCTTTTTTTGCGAAACAAAAGCATTAATATCGTGTATCCTAAT-AGGAAGACTATGTTTAT
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGG-AGAATGTGCTTAT
* * * * * * * *
1208186 GGTGCCTAATCCTGAAAA-GAATGGGGATTACTATGAGTATTCAT-TTTGTCCTATTTAAGAGAT
65 AGTGCCTAATCCT-AAAATGAAAGGAGATCATTACGAG-AATCATGTTTGTCTTATTTAAG-GAT
* * * *
1208249 AAATTTTGATTCTATTA-AAAAT-GGTGGAAAG
127 GAACTTTGATT-T-TAAGAAAATAGG-GCAAAG
* * * * * * *
1208280 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGG-GTATGCG-TTTT
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGCTTAT
* * * * * * * * *
1208343 AGTTTCCCAATCCTAAAAAGGATGGGGA-CTATTACGAGAATCGATGCTTATCTTAGTTAAGGGA
65 AG-TGCCTAATCCTAAAATGAAAGGAGATC-ATTACGAGAATC-ATGTTTGTCTTATTTAA-GGA
* *
1208407 TTAACTTTGATTTTAAGGAAAATAGGGCAAGG
126 TGAACTTTGATTTTAA-GAAAATAGGGCAAAG
** * * ** * * *
1208439 AAAAGAATATCATGCAAAAGAAAATCATCAATATCATTTATCGTAATGAGGAGAATGTGCTTATA
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATA
* * * * * * *
1208504 GTGCCTAATCATAAAATGAAAGAAGATCTTTACAAGAATCAATGTTTGTCTCATTTGAGGCACGA
66 GTGCCTAATCCTAAAATGAAAGGAGATCATTACGAGAATC-ATGTTTGTCTTATTTAAGG-ATGA
** * **
1208569 ACTCAGACTTTACA-AAAATTA--GCAGGG
129 ACTTTGATTTTA-AGAAAA-TAGGGCAAAG
* * ** ** *
1208596 AAAAAGCCTTTCGTGGGAAA-CAAAGCATCAATATCATGTATCCTAA-GA-GACTATGT--TTAC
1 -AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTAT
* * * * * * * * *
1208656 AATACCTAATCCTAAAAAGAATGTG-GATTATTATGAGTATTCATGATTGTCTTATTTAAGAGAC
65 AGTGCCTAATCCTAAAATGAAAG-GAGATCATTACGAG-AATCATGTTTGTCTTATTTAAG-GAT
* * * * * *
1208720 AAACTTTTATTCTTTATAAAA-CGGTGAAAAG
127 GAACTTTGATT-TTAAGAAAATAGG-GCAAAG
* * * * * *
1208751 AAAAGCTTTTCTTACAACACCAAAGCATCAATGTCCTGTATCCTAATGA-AAGGAATGTG-TTTT
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGA-GAATGTGCTTAT
* * * * * *
1208814 AGGTTCCCAATCCTGAAAA-GAATGGAGA-CAGTTACAAGAATTGATGCTTGTCTTATTTAAGGG
65 A-GTGCCTAATCCT-AAAATGAAAGGAGATCA-TTACGAGAA-TCATGTTTGTCTTATTTAA-GG
1208877 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
125 ATGAACTTTGATTTTAA-GAAAATAGGGCAAAG
** * * *** ** *
1208910 AAAAGAATTCCATGCAAAGGAAAATTATCAATATCATTTATCCTAATGA-G-G-A---GCTTATA
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATA
* ** * * **
1208969 GTGCCTAATCATAAAATGAAAAAAGATCATTAC-AGGAATCCATGTTTGTCTCATTTGAGGCACA
66 GTGCCTAATCCTAAAATGAAAGGAGATCATTACGA-GAAT-CATGTTTGTCTTATTTAAGG-ATG
* * * * **
1209033 AACTTAGACTTTACA-AAAAT-TGGTAGGG
128 AACTTTGATTTTA-AGAAAATAGGGCAAAG
* * * * * * *
1209061 AAAAAGCCTTTCTTGCGAAACCAAATCATCAATATCGTGTATCCTAAT-AGGAAGACTATGTTTA
1 -AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGG-AGAATGTGCTTA
* * * * * *
1209125 TGGTGCCTAATCCTAAAAT-------GATTACTATGAGTATTCATG-TTGTCTTATTTAAGAGAC
64 TAGTGCCTAATCCTAAAATGAAAGGAGATCATTACGAG-AATCATGTTTGTCTTATTTAAG-GAT
* * ** *
1209182 AAACTTTGATTCTATCAAAA-ACGGTGGAAAG
127 GAACTTTGATTTTAAGAAAATA-GG-GCAAAG
* * * * * *
1209213 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGA-AAGAAATGTG-TTTT
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAG-AATGTGCTTAT
* * * * * *
1209276 AGTTTCCCAATCTTGAAAA-GAATGGGGA-CTATTACGAGAATCAATGCTTGTCTTATTTAAGGA
65 AG-TGCCTAATCCT-AAAATGAAAGGAGATC-ATTACGAGAATC-ATGTTTGTCTTATTTAAGG-
* * *
1209339 ATTAACATTT-ATTTTACGGAAAAATAAGGCAAAG
125 ATGAAC-TTTGATTTTA-AG-AAAATAGGGCAAAG
** * * * * *
1209373 AAAAG-AATTCTATGCAAAA-GAATATCATCAATATCATTTATCCTATTGAGTAGAATGTGCTTA
1 AAAAGCTTTTCT-TGCAAAACCAA-AGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTA
* * * * * ** * * *
1209436 TAATGCCTAATCATAAAATGAAAGAAAATCTTTAATAGAACCCATGTTTGTCTCATTTGAGGCAT
64 TAGTGCCTAATCCTAAAATGAAAGGAGATCATTACGAGAA-TCATGTTTGTCTTATTTAAGG-AT
* * ***
1209501 GAACTTAGACTTTACA-AAAACT-GGTGGGGA-
127 GAACTTTGATTTTA-AGAAAA-TAGG-GCAAAG
* * * *
1209531 AAAAGCTTTTTTTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT-AGGATGACTATGTTTA
1 AAAAGC-TTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGA-GAATGTGCTTA
* * * * * * * *
1209595 TGGTGCCTAATCCTGAAAA-GAATGGCGATTACTATGAGTATTCA-CTTTGTCCTT-TTTAAGAG
64 TAGTGCCTAATCCT-AAAATGAAAGGAGATCATTACGAG-AATCATGTTTGT-CTTATTTAAG-G
* * ** *
1209657 ATAAACTTTGATTCTATTAAAA-ACGGTGGAAAG
125 ATGAACTTTGATTTTAAGAAAATA-GG-GCAAAG
* * ** * *
1209690 AAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTGTTGAAGG-GTATGCG-TTAT
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGCTTAT
* * * * * * *
1209753 AGTTTCCCAATCCTGAAAA-GAATGGGGA-CTGTTATGAGAATCGATGCTTGTCTTATTTAAGGG
65 AG-TGCCTAATCCT-AAAATGAAAGGAGATC-ATTACGAGAATC-ATGTTTGTCTTATTTAA-GG
* *
1209816 ATTAACTTTGATTTTAAGGAAAATAGGGCAAGG
125 ATGAACTTTGATTTTAA-GAAAATAGGGCAAAG
** * ** * * *
1209849 AAAAGAATTTCATGCAAAAGAAAATCATCAATTTCATTTATCCTAATGAGGAGAATGTGCTTATA
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATA
* * * * * * ** * *
1209914 GTGCGTAATCATAAAATGAAAGAAGATCTTTACAAGAATCAATGTTTGTCTCATTCGAGGCACGG
66 GTGCCTAATCCTAAAATGAAAGGAGATCATTACGAGAATC-ATGTTTGTCTTATTTAAGG-ATGA
* * * **
1209979 ACTTAGACTTTACA-AAAAT-TGGCAGGG
129 ACTTTGATTTTA-AGAAAATAGGGCAAAG
* * * * * * *
1210006 AAAAAGCCTTTCGTGCAAAA-CAAAGCATCAATATCGTGTATCCTAATGAGGAGACTATGTTTAC
1 -AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTAT
* * * * * ** * * *
1210070 AATACCTAATCCTAAAAAGAATGTG-GATTATTATAAGTATTCATGATTGTCTTATTTAGGTGAT
65 AGTGCCTAATCCTAAAATGAAAG-GAGATCATTACGAG-AATCATGTTTGTCTTATTTAAG-GAT
* * * *
1210134 AAACTTTGATTCTTTATAAAATAATGG-AAAG
127 GAACTTTGATT-TTAAGAAAAT-AGGGCAAAG
* * * ** *
1210165 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT-AAAAGGAATGTG-TTTT
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGA-GAATGTGCTTAT
* * * *
1210228 AG-GTTCTCAATCCTGAAAA-GAAGGGAGA-C-TGCTACGAGAGTCGATGCTTGTCTTATTTAAG
65 AGTG-CCT-AATCCT-AAAATGAAAGGAGATCAT--TACGAGAATC-ATGTTTGTCTTATTTAA-
1210289 GGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
123 GGATGAACTTTGATTTTAA-GAAAATAGGGCAAAG
*** * * ** ** * *
1210324 AAAATAATTCCATGCAAAAAAAAAATATCAATATCATTTATCCTAGTGA-G-G-A---GCTTATA
1 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATA
* * * * **
1210383 GTGCCTAATCCTAAAATGAAAGAAGATC---ACAAGAATCCATGTTTGTCTCATTTGAGGCACAA
66 GTGCCTAATCCTAAAATGAAAGGAGATCATTACGAGAAT-CATGTTTGTCTTATTTAAGG-ATGA
* * * * **
1210445 ACTTAGACTTTACA-AAAAT-TGGTAGGG
129 ACTTTGATTTTA-AGAAAATAGGGCAAAG
*
1210472 AAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAAT-AGGAAGAAT
1 -AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGG-AGAAT
1210529 ATGTGTTAGG
Statistics
Matches: 2875, Mismatches: 837, Indels: 526
0.68 0.20 0.12
Matches are distributed among these distances:
140 2 0.00
141 44 0.02
142 7 0.00
143 32 0.01
144 8 0.00
145 4 0.00
146 1 0.00
147 1 0.00
148 5 0.00
149 50 0.02
150 67 0.02
151 80 0.03
152 66 0.02
153 117 0.04
154 40 0.01
155 38 0.01
156 19 0.01
157 370 0.13
158 804 0.28
159 913 0.32
160 187 0.07
161 19 0.01
162 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (156 bp):
AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATA
GTGCCTAATCCTAAAATGAAAGGAGATCATTACGAGAATCATGTTTGTCTTATTTAAGGATGAAC
TTTGATTTTAAGAAAATAGGGCAAAG
Found at i:1210879 original size:19 final size:20
Alignment explanation
Indices: 1210855--1210905 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
1210845 CAATACATTA
**
1210855 TATCGATACATGTTC-ATCG
1 TATCGATACATGCACAATCG
*
1210874 TATCGATACATGCACAATTG
1 TATCGATACATGCACAATCG
1210894 TATCGATACATG
1 TATCGATACATG
1210906 AGACTGGCAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (20 bp):
TATCGATACATGCACAATCG
Found at i:1212591 original size:3 final size:3
Alignment explanation
Indices: 1212576--1212606 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
1212566 AACCATCAAA
*
1212576 GAT GAT GAA GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1212607 TTGACTCAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:1218608 original size:33 final size:33
Alignment explanation
Indices: 1218547--1218611 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
1218537 CGAGAGTTGA
* *
1218547 TCACTTCACTTTTGCAGCACATGAATGAGCACT
1 TCACTTCACTCTCGCAGCACATGAATGAGCACT
** *
1218580 TCACTTCACTCTCGCAGTGCATGGATGAGCAC
1 TCACTTCACTCTCGCAGCACATGAATGAGCAC
1218612 CTTAGTGCAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (33 bp):
TCACTTCACTCTCGCAGCACATGAATGAGCACT
Found at i:1219105 original size:143 final size:143
Alignment explanation
Indices: 1218942--1219223 Score: 546
Period size: 143 Copynumber: 2.0 Consensus size: 143
1218932 GGGGGAGAAA
*
1218942 TTTTTTTTTAAAATGAGAGCCTTGATTATTTTATCAAGGTGGCAAAAAATGAAACTTTGACATTT
1 TTTTTTTTTAAAACGAGAGCCTTGATTATTTTATCAAGGTGGCAAAAAATGAAACTTTGACATTT
1219007 GAACTTTTCTAATGCGTTTCTTGAAGTTGTGTATATCAAATTACAGGTTATGAATTCTGTTGATA
66 GAACTTTTCTAATGCGTTTCTTGAAGTTGTGTATATCAAATTACAGGTTATGAATTCTGTTGATA
1219072 CAAAGAGAAATTT
131 CAAAGAGAAATTT
1219085 TTTTTTTTTAAAACGAGAGCCTTGATTATTTTATCAAGGTGGCAAAAAATGAAACTTTGACATTT
1 TTTTTTTTTAAAACGAGAGCCTTGATTATTTTATCAAGGTGGCAAAAAATGAAACTTTGACATTT
*
1219150 GAACTTTTCTAATGCGTTTTTTGAAGTTGTGTATATCAAATTACAGGTTATGAATTCTGTTGATA
66 GAACTTTTCTAATGCGTTTCTTGAAGTTGTGTATATCAAATTACAGGTTATGAATTCTGTTGATA
1219215 CAAAGAGAA
131 CAAAGAGAA
1219224 TGATTGTATA
Statistics
Matches: 137, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 137 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (143 bp):
TTTTTTTTTAAAACGAGAGCCTTGATTATTTTATCAAGGTGGCAAAAAATGAAACTTTGACATTT
GAACTTTTCTAATGCGTTTCTTGAAGTTGTGTATATCAAATTACAGGTTATGAATTCTGTTGATA
CAAAGAGAAATTT
Found at i:1219278 original size:143 final size:141
Alignment explanation
Indices: 1218984--1219270 Score: 326
Period size: 143 Copynumber: 2.0 Consensus size: 141
1218974 ATCAAGGTGG
1218984 CAAAAAATGAAACTTTGACATTTGAACTTTTCTAATGCGTTTCTTGAAGTTGTGTATATCAAATT
1 CAAAAAATGAAACTTTGACATTTGAACTTTTCTAATGCGTTTCTTGAAGTTGTGTATATCAAATT
** * * * ** * * *
1219049 ACAGGTTATGAATTCTGTTGATACAAAGAGAAATTTTTTTTTTTTAAAACGAGAGCCTTGATTAT
66 ACAGGTTATGAATTCTGTTGATACAAAGAGAAA--TTGATTGTATAAAACGAGAACAATCATAAG
* * * * **
1219114 TTTATCAAGGTGG
129 ATCATAAAGCTAC
*
1219127 CAAAAAATGAAACTTTGACATTTGAACTTTTCTAATGCGTTTTTTGAAGTTGTGTATATCAAATT
1 CAAAAAATGAAACTTTGACATTTGAACTTTTCTAATGCGTTTCTTGAAGTTGTGTATATCAAATT
* **
1219192 ACAGGTTATGAATTCTGTTGATACAAAGAG-AA-TGATTGTATACAAGCTTGAACAAATCAGTAA
66 ACAGGTTATGAATTCTGTTGATACAAAGAGAAATTGATTGTATA-AAACGAGAAC-AATCA-TAA
1219255 GATCATAAATGCTAC
128 GATCATAAA-GCTAC
1219270 C
1 C
1219271 TGGAAATGCA
Statistics
Matches: 120, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
139 6 0.05
140 6 0.05
141 2 0.02
142 9 0.08
143 97 0.81
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.37
Consensus pattern (141 bp):
CAAAAAATGAAACTTTGACATTTGAACTTTTCTAATGCGTTTCTTGAAGTTGTGTATATCAAATT
ACAGGTTATGAATTCTGTTGATACAAAGAGAAATTGATTGTATAAAACGAGAACAATCATAAGAT
CATAAAGCTAC
Found at i:1221162 original size:159 final size:159
Alignment explanation
Indices: 1220537--1224792 Score: 1498
Period size: 159 Copynumber: 27.0 Consensus size: 159
1220527 TTGAGCTTTC
*** *
1220537 ACTATGTTTATGGCGCCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTCATG-TTGTTTTA
1 ACTATGTTTATGATACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTA
* *
1220601 TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAA
66 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAA
* * *
1220666 GCATCAATGTCATGTATCCTATTGA-AGGG
131 GCATCAATATCATGTATCCTAATGAGA-AG
* * * * * * * * **
1220695 A-AAGTGTTT-TAGTTTGCC-AATCCTGAAATGAATGGGGACTATTACGAG-AATCGATACTTGT
1 ACTA-TGTTTAT-G-ATACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTC-ATGTTTGT
* * ** * * ** * * *
1220756 CCTATTTAA-AGA-ATTAACTTTGATTTTAAGGAAGAATAGG-GCAAAGAAAAGAATTCCATGGA
62 CTTATTTAAGAGACA--AACTTTGATTCT-ATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCA
** * * *
1220818 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
123 AAACCAAAGCATCAATATCATGTATCCTAATGAGAAG
* * * * * * * ** * * * *
1220855 AATGTGCTTATAATGCCTAATCAT-AAAATGAAAGAAGATCATTACT-AGAATCCATGTTTGTCT
1 ACTATGTTTATGATACCTAATCCTGAAAA-GAATGGGGATTACTA-TGAGTATTCATGTTTGTCT
* * * ** * *
1220918 CATCTGAG-GTATGAA-TTAGACTT-TA-CAAAAATTGGTGGAGAA-AAAACCTTTT-TTGCAAA
64 TATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-TGGTGGA-AAGAAAAGCTTTTCTTGCAAA
* *
1220977 ACCAAAGCACCAATATCATGTGTCCTAATGAGAAG
125 ACCAAAGCATCAATATCATGTATCCTAATGAGAAG
* * * *
1221012 ACTATGTTTATGGTACCTAATCCTGAAAGGAATGGGGATTACTGTGAGTATTCATGTTTGTTTTA
1 ACTATGTTTATGATACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTA
* * * * *
1221077 TTTAAGAGATAAACTTTGATTCTATTAAAAATGGTGGAAGGAAAAGCTTTTCTTGCGACACCAAA
66 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAA
* *
1221142 GCATCAATGTCATGTATCCTAATGA-AGGG
131 GCATCAATATCATGTATCCTAATGAGA-AG
* * * * * * * ** * ** * * *
1221171 AATGTGTTT-TAGGTTCCCAATCATGAAAAGCATGGAAACTGTTATGAG-AATCAATGCTTATCT
1 ACTATGTTTAT-GATACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTC-ATGTTTGTCT
* * * *** * **
1221234 TATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGG-GCAGAA-AAAAG-AATTCTATGCAAAA
64 TATTTAAGAGACAAACTTTGATTCTATCAAAAAT-GGTGGA-AAGAAAAGCTTTTCT-TGCAAAA
** ** * * *
1221296 AAAAATTATCAATATTATTTATCCTAACGAG--G
126 CCAAAGCATCAATATCATGTATCCTAATGAGAAG
* * * ** * * ** *
1221328 ---A-GTTTAT-AGTGCCTAATCAT-AAAATGAAAGAAGATCATTACAAG-AATCTAT-TTTGTC
1 ACTATGTTTATGA-TACCTAATCCTGAAAA-GAATGGGGATTACTATGAGTATTC-ATGTTTGTC
* * * *
1221385 TCATTTGAG-GCACAAACTTAGACTT-TA-CAAAAATTGGTAGG---GAAAAGCCTTTCTTGCAA
63 TTATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-TGGT-GGAAAGAAAAGCTTTTCTTGCAA
* *
1221444 AA-CAAAGCATCAATATCGTGTATCCTAATGAGAAT
124 AACCAAAGCATCAATATCATGTATCCTAATGAGAAG
** * * *
1221479 ACTATGTTTACAATACCTAATCTTGAATAGAATGGGGATTACTATGAGTATTCTTGTTTGTCTTA
1 ACTATGTTTATGATACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTA
* * * * * * *
1221544 TTTGAGAGACAAACTTTGTTTCT-TTACAAAATGTTGAAAAGAAAAGCCTTTCCTGCAAAACCAA
66 TTTAAGAGACAAACTTTGATTCTATCA-AAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAA
* *
1221608 AGCATCAATATCATGTACCCTAATGAGAAA
130 AGCATCAATATCATGTATCCTAATGAGAAG
* * *
1221638 ACTATGTTTATGGTACCTAATCTTGAAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTA
1 ACTATGTTTATGATACCTAATCCTG-AAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTT
* * * * * *
1221703 ACTTAAGAGACAAACTTTGATTCTTTAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACTAA
65 ATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAA
* * * * *
1221768 AACATTAATGTAATGTATCCTAATGA-AGGG
130 AGCATCAATATCATGTATCCTAATGAGA-AG
* * * * * ** * ** * * * *
1221798 AATGTGTTT-TACATTCCCAATCCTGAAAAGAATGGAAACTGTTACGAG-AATCGATGCTTGTTT
1 ACTATGTTTAT-GATACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTC-ATGTTTGTCT
* * * * * *
1221861 TATTTAAAAGATAAACTTTGATT-T-T-AAGGAAATAGG-GCAAAGAAAAGATTTCCATGCAAAA
64 TATTTAAGAGACAAACTTTGATTCTATCAA--AAAT-GGTGGAAAGAAAAGCTTTTCTTGCAAAA
* * * * * *
1221922 --AAATCATCTATATCAT-TCAGCCTCATCAGGAG
126 CCAAAGCATCAATATCATGT-ATCCTAATGAGAAG
* * * * * * * ** * * * *
1221954 AATGTGCTTATAATGCCTAATCAT-AAAATGAAAGAAGATCATTACT-AGAATCCATGTTTGTCT
1 ACTATGTTTATGATACCTAATCCTGAAAA-GAATGGGGATTACTA-TGAGTATTCATGTTTGTCT
* * *
1222017 CATTTAAG-G-CATGAA-TTTAGACTT-TA-CAAAAACTGGTGGGAA-AAAAGCCTTTCTTGCAA
64 TATTTAAGAGACA--AACTTT-GA-TTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCAA
* * *** *
1222076 TACCAAAGCATTAATATTGCGTATCCTAAGGAGAAG
124 AACCAAAGCATCAATATCATGTATCCTAATGAGAAG
* * * *
1222112 ACTATATTTAGGGTACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTAA
1 ACTATGTTTATGATACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTA
* * ** * ** *
1222177 TTTAAGAAACAAGCTTTGATTCTATCAAAAACAGAGGAAA-AAAAGCTTTTCTTGTGACACCAAA
66 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAA
* * *
1222241 GCATCAATGTCATTTATCCTAATGA-AGGG
131 GCATCAATATCATGTATCCTAATGAGA-AG
* * * * * * * ** * * ** *
1222270 AATGTGTTT-TAGTTTCCCAATCCTGAAAA-TATGGGAGACTGTTACGAGAATGGATGCTTGTCT
1 ACTATGTTTAT-GATACCTAATCCTGAAAAGAATGGG-GATTACTATGAGTATTCATGTTTGTCT
* ** * *** * * ** * * *
1222333 TATTTAAGGGATGAACTTTAAATT-TAAGGAAAATAGG-GCAAAGAGAAGAATTCCATGCAAAAG
64 TATTTAAGAGACAAACTTT-GATTCTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCAAAAC
* * * * * *
1222396 AAAATCATCAATATCATTTATGCTAGTGAGGAG
127 CAAAGCATCAATATCATGTATCCTAATGAGAAG
* * * * * * * * * ** * * *
1222429 AATGTGTTTATAATGCGTAATCATCAAATGAAAGAAGATCATTAAT-AG-AATCTATGTTTGTCT
1 ACTATGTTTATGATACCTAATCCTGAAAAGAATGGGGATTACT-ATGAGTATTC-ATGTTTGTCT
* * ** *
1222492 TATTTGAG-GCACGAACTTACACTT-TA-CAAAAATTGGTTAGG--A-AAAAGCTTTTCTTGCGA
64 TATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-TGG-T-GGAAAGAAAAGCTTTTCTTGCAA
* * **
1222551 AA-CAAAGCGTTAATATTGTGTATCCTAATGAGAAG
124 AACCAAAGCATCAATATCATGTATCCTAATGAGAAG
* ** * * * *
1222586 ACTATGTTCACAATACGTAATCCCGAAAAGAATGGGGATTACTATAAGTATTCATGTTTATCTTA
1 ACTATGTTTATGATACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTA
* * * * *
1222651 TTTGAGAGACAAACTTTGATTCT-TTATAAATTGGTGGAAAGAAAAGCCTTTCTTGCGAAA-CAA
66 TTTAAGAGACAAACTTTGATTCTATCA-AAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAA
* *
1222714 AGCATCAATATCATGTATTCTAATAAGAAG
130 AGCATCAATATCATGTATCCTAATGAGAAG
** * * ** * *
1222744 ACTATGTTTACAATACCTAATCCTGAAAAAAATGGGGATTATTATCCGCATTCATGATTGTCTTA
1 ACTATGTTTATGATACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTA
* * * *
1222809 TTTAAGAGACAAACTTTGATTCT-TTATAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
66 TTTAAGAGACAAACTTTGATTCTATCA-AAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAA
* * *
1222873 AGCATCAATGTCAAGTATCCTACTGAAGGAA-
130 AGCATCAATATCATGTATCCTAATG-A-GAAG
* * * * * ** * *** *
1222904 ATGTAT-TTTA-GGT-TCTCAATCCTGAAAAGAATGGAGACTGTTATGAGAATTGGCGCTTGTCT
1 A-CTATGTTTATGATACCT-AATCCTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCT
* ** * ** * *** *
1222966 TATTTAAGGGATTAACTTTGATTTTATGGAAAATAGG-GCG-AAGAAATGAAATTCAATGCAAAA
64 TATTTAAGAGACAAACTTTGATTCTATCAAAAAT-GGTG-GAAAGAAAAGCTTTTC-TTGCAAAA
** * ** * *
1223029 GAAAATCATCAATAGAATTTATCCTAATGAGGAG
126 CCAAAGCATCAATATCATGTATCCTAATGAGAAG
* * * * * ** * * * * *
1223063 AATGTGCTTAT-ATACCTAATCAT-AAAATGAAAGAAGATCATTCCT-AGAATCCATGTTTGTCT
1 ACTATGTTTATGATACCTAATCCTGAAAA-GAATGGGGATTACT-ATGAGTATTCATGTTTGTCT
* * * * ** *
1223125 CATTTGAG-GCACGAACTTTGACTT-TA-CAAAAACTGGCGGGGA-AAAAGCCTTTCTTGCAAAA
64 TATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCAAAA
* *
1223186 CCAAAGCATCAATATCATGTATCCAAATGAGAAT
126 CCAAAGCATCAATATCATGTATCCTAATGAGAAG
* * * *
1223220 ACTATGTTTATGGTACCTAATCCTAAAAAGAATGGGGATTACTTTGACTATTCATGTTTGTCTTA
1 ACTATGTTTATGATACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTA
* * * *
1223285 TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACTAAA
66 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAA
* * *
1223350 GCATCAATGTCATGTATTCTAATGA-AGGG
131 GCATCAATATCATGTATCCTAATGAGA-AG
* * * * * * * ** * * *
1223379 AATGTGTTT-TAGTTTCCCAATCCTAAAAAGAATGGGGACTGTTAAGAG-AATCGATGCTTGTCT
1 ACTATGTTTAT-GATACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTC-ATGTTTGTCT
* * *** * *** * * ** * * **
1223442 TATTTAAGTGATATGTTTTGATTTTAAGGAAACTAGGT-CAAAGAAAAGAATTCCATGCAAAAGA
64 TATTTAAGAGACAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCAAAACC
* * * *
1223506 AAATCATCAATATCATTTATCCTAAAGAGGAG
128 AAAGCATCAATATCATGTATCCTAATGAGAAG
* * * * * * **** * * ** * *
1223538 AATGTGCTTAT-ACTGCCAAATCAT-AAAATGAAAAAAGATCATTACAAGAATCCA------TCT
1 ACTATGTTTATGA-TACCTAATCCTGAAAA-GAATGGGGATTACTATGAGTATTCATGTTTGTCT
* * * * * * ** * **
1223595 CATTTATG-GTGCGAACTTAGATTTTA-CAAAAAT--TGTTAAGAAAAAGCCTTTCTTGTGAAA-
64 TATTTAAGAG-ACAAACTTTGATTCTATCAAAAATGGTGGAAAG-AAAAGCTTTTCTTGCAAAAC
* * *
1223655 CAAAGCATCAACATCTTGTATTCTAATGAGAAG
127 CAAAGCATCAATATCATGTATCCTAATGAGAAG
* ** * * *
1223688 ATTATGTTTACAATACCTAATCTTGAAAAGAATGAGGG-TTATTATGAGTATTCATGATTGTCTT
1 ACTATGTTTATGATACCTAATCCTGAAAAGAATG-GGGATTACTATGAGTATTCATGTTTGTCTT
* * * *
1223752 AGTTAAGAGACAAACTTTGATTCT-TTATAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCA
65 ATTTAAGAGACAAACTTTGATTCTATCA-AAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCA
* * *
1223816 AAGCATCAATGTCATATATCCTATTGA-AAGG
129 AAGCATCAATATCATGTATCCTAATGAGAA-G
* * * * * * * * ** * * * ** *
1223847 AATCTGTTT-TAGTTTCCCAATCCTAAAAAGAATAGGGACTGTTACGAGAATTGATGCCTATCTT
1 ACTATGTTTAT-GATACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTT
* * ** * *** * * *
1223911 ATTTAAGCA-ACTAACTTTGATTTTAAGGAAAAATAGG-GCAAAGAAAAAAATTCCATGCAAAAG
65 ATTTAAG-AGACAAACTTTGATTCT-ATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCAAAAC
* * * *
1223974 AAAATCATCAATATCATTTATCCTAATGAGGAG
127 CAAAGCATCAATATCATGTATCCTAATGAGAAG
* * * * * * * * ** * * * *
1224007 AATGTGCTTATAATGCCTAATCAT-AAGATGAAAGAAGATCATTAAT-AGAATTCATGTTTGCCT
1 ACTATGTTTATGATACCTAATCCTGAA-AAGAATGGGGATTACT-ATGAGTATTCATGTTTGTCT
* * * * **
1224070 CATTTGAG-GCACGAACTTAGACTT-TA-CAAAAACTGGTGGGGA-AAAAGCCTTTT-TTGCAAA
64 TATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAAAG-CTTTTCTTGCAAA
* * ** *
1224130 ACCAAAGCGTTAATATCGCGTATCGTAATGAGAAG
125 ACCAAAGCATCAATATCATGTATCCTAATGAGAAG
* * *
1224165 ACTATATATTTAGGGTACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCT
1 AC--TATGTTTATGATACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCT
* * * * * * *** *
1224230 GATTTAAGAAACAAAATTTGATTCTATCAAAAACGATGGAAATAAAAGCTTTTCTTATGACACCA
64 TATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCA
* * *
1224295 AAGCAACAATGTCATGTATCCTAATGA-AGGG
129 AAGCATCAATATCATGTATCCTAATGAGA-AG
* * * * * * * ** * * *
1224326 AATGTGTTT-TAGTTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAG-AATCGATGCTTGCCT
1 ACTATGTTTAT-GATACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTC-ATGTTTGTCT
* * *** * ** * *
1224389 TATTTAAGGGATGAAA-TTTGAATT-TAAGGAAAATAGG-GCAAAGAAAAGAATTCCATGCAAAA
64 TATTTAAGAGA-CAAACTTTG-ATTCTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCAAAA
** ** * * * *
1224451 GAAAATTATCAATGTCATTTATGCTAATGAGGAG
126 CCAAAGCATCAATATCATGTATCCTAATGAGAAG
* * * * * * ** * * * * *
1224485 AATGTGCTTATAATACCTAATCAT-AAAATGAAAGAAGATCATTAAT-AGAATCCTTGTTTGTCT
1 ACTATGTTTATGATACCTAATCCTGAAAA-GAATGGGGATTACT-ATGAGTATTCATGTTTGTCT
* ** * *
1224548 TATTT--GAGGCATGAACTTACACTT-TA-CAAAAATTGGTAGG---GAAAAGCCTTTCTTGCGA
64 TATTTAAGAGACA--AACTTTGA-TTCTATCAAAAA-TGGT-GGAAAGAAAAGCTTTTCTTGCAA
1224606 AA-CAAAGCATCAATATCATGTATCCTAATGAGAAG
124 AACCAAAGCATCAATATCATGTATCCTAATGAGAAG
* ** * * * * *
1224641 ACTATGTTCACAATACGTAATCTTGAAAAGAATGGGGATAACTATAAGTATTCATGGTTGTCTTA
1 ACTATGTTTATGATACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTA
* * * * * *
1224706 TTTGAGAGACAAACTTTGATTCT-TTATAAATCGGTGGAAAGAAAAGCCTTTCTTACGAAA-CAA
66 TTTAAGAGACAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCAAAACCAA
*
1224769 AGCATCAATATCATGTATTCTAAT
130 AGCATCAATATCATGTATCCTAAT
1224793 AGGCCAAATA
Statistics
Matches: 2955, Mismatches: 911, Indels: 464
0.68 0.21 0.11
Matches are distributed among these distances:
149 24 0.01
150 69 0.02
151 30 0.01
152 32 0.01
153 50 0.02
154 3 0.00
155 48 0.02
156 232 0.08
157 277 0.09
158 712 0.24
159 970 0.33
160 443 0.15
161 65 0.02
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (159 bp):
ACTATGTTTATGATACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTA
TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAA
GCATCAATATCATGTATCCTAATGAGAAG
Found at i:1221699 original size:160 final size:158
Alignment explanation
Indices: 1221426--1223374 Score: 570
Period size: 158 Copynumber: 12.3 Consensus size: 158
1221416 AATTGGTAGG
* * * *
1221426 GAAAAGCCTTTCTTGCAAAACAAAGCATCAATATCGTGTATCCTAATGAGAATACTATGTTTACA
1 GAAAAGCCTTTCCTGCAAAACAAAGCATCAATATCATGTACCCTAATGAGAAAACTATGTTTACA
* * * * *
1221491 ATACCTAATCTTGAATAGAATGGGGATTACTATGAGTATTCTTGTTTGTCTTATTTGAGAGACAA
66 ATACCTAATCTTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTAACTTAAGAGACAA
* * *
1221556 ACTTTGTTTCTTTACAAAATGTTGAAAA
131 ACTTTGATTCTTTAAAAAATGGTGAAAA
*
1221584 GAAAAGCCTTTCCTGCAAAACCAAAGCATCAATATCATGTACCCTAATGAGAAAACTATGTTTAT
1 GAAAAGCCTTTCCTGCAAAA-CAAAGCATCAATATCATGTACCCTAATGAGAAAACTATGTTTAC
**
1221649 GGTACCTAATCTTGAAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTAACTTAAGAGAC
65 AATACCTAATCTTG-AAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTAACTTAAGAGAC
*
1221714 AAACTTTGATTCTTTAAAAAATGGTGGAAA
129 AAACTTTGATTCTTTAAAAAATGGTGAAAA
* * * * * * * * * ** *
1221744 GAAAAGCTTTTCTTGCGACACTAAAACATTAATGTAATGTATCCTAATGAAGGGAA-TGTGTTTT
1 GAAAAGCCTTTCCTGCAAAAC-AAAGCATCAATATCATGTACCCTAATG-AGAAAACTATG-TTT
* * * ** * ** * * * * * * *
1221808 AC-ATTCCCAATCCTGAAAAGAATGGAAACTGTTACGAG-AATCGATGCTTGTTTTATTTAAAAG
63 ACAATACCTAATCTTGAAAAGAATGGGGATTACTATGAGTATTC-ATGTTTGTCTAACTTAAGAG
* * *
1221871 ATAAACTTTGA-T-TTTAAGGAAATAGG-GCAAA
127 ACAAACTTTGATTCTTTAA-AAAAT-GGTGAAAA
* * * * * * * * *
1221902 GAAAAG-ATTTCCATGCAAAA-AAATCATCTATATCAT-TCAGCCTCATCAGGAGAA-TGTGCTT
1 GAAAAGCCTTTCC-TGCAAAACAAAGCATCAATATCATGT-ACCCTAATGA-GAAAACTATGTTT
* * * * ** * * * * * *
1221963 ATAATGCCTAATCAT-AAAATGAAAGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTAAG-
63 ACAATACCTAATCTTGAAAA-GAATGGGGATTACTA-TGAGTATTCATGTTTGTCTAACTTAAGA
**
1222025 G-CATGAA-TTTAGA--CTTTACAAAAACTGGTGGGAA
126 GACA--AACTTT-GATTCTTTA-AAAAA-TGGTGAAAA
* * * *** * * * * *
1222059 -AAAAGCCTTTCTTGCAATACCAAAGCATTAATATTGCGTATCCTAAGGAGAAGACTATATTTAG
1 GAAAAGCCTTTCCTGCAA-AACAAAGCATCAATATCATGTACCCTAATGAGAAAACTATGTTTAC
** * * *
1222123 GGTACCTAATCCTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTAATTTAAGAAACA
65 AATACCTAATCTTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTAACTTAAGAGACA
* * * ** * *
1222188 AGCTTTGATTCTATCAAAAACAGAGGAAA
130 AACTTTGATTCTTTAAAAAATGGTGAAAA
* * * * * * * * ** *
1222217 -AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATTTATCCTAATGAAGGGAA-TGTGTTTT
1 GAAAAGCCTTTCCTG-CAAAACAAAGCATCAATATCATGTACCCTAATG-AGAAAACTATG-TTT
** * * * * * ** * * ** * * * *
1222280 A-GTTTCCCAATCCTGAAAA-TATGGGAGACTGTTACGAGAATGGATGCTTGTCTTATTTAAGGG
63 ACAATACCTAATCTTGAAAAGAATGGG-GATTACTATGAGTATTCATGTTTGTCTAACTTAAGAG
** ** *
1222343 ATGAACTTT-A-AATTTAAGGAAAATAGG-GCAAA
127 ACAAACTTTGATTCTTTAA--AAAAT-GGTGAAAA
* ** * * * ** * * *
1222375 GAGAAG-AATTCCATGCAAAAGAAAATCATCAATATCATTTATGCTAGTGAGGAGAA-TGTGTTT
1 GAAAAGCCTTTCC-TGCAAAA-CAAAGCATCAATATCATGTACCCTAATGA-GAAAACTATGTTT
* * * * * * * ** * * * * * *
1222438 ATAATGCGTAATCATCAAATGAAAGAAGATCATTAAT-AG-AATCTATGTTTGTCTTATTTGAG-
63 ACAATACCTAATCTTGAAAAGAATGGGGATTACT-ATGAGTATTC-ATGTTTGTCTAACTTAAGA
* ** * **
1222500 GCACGAAC-TT-ACACTTTACAAAAATTGGTTAGGA
126 G-ACAAACTTTGATTCTTTA-AAAAA-TGGTGAAAA
* * * * * ** * * *
1222534 -AAAAGCTTTTCTTGCGAAACAAAGCGTTAATATTGTGTATCCTAATGAGAAGACTATGTTCACA
1 GAAAAGCCTTTCCTGCAAAACAAAGCATCAATATCATGTACCCTAATGAGAAAACTATGTTTACA
* ** * * * * *
1222598 ATACGTAATCCCGAAAAGAATGGGGATTACTATAAGTATTCATGTTTATCTTATTTGAGAGACAA
66 ATACCTAATCTTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTAACTTAAGAGACAA
* * *
1222663 ACTTTGATTCTTTATAAATTGGTGGAAA
131 ACTTTGATTCTTTAAAAAATGGTGAAAA
* * ** * *
1222691 GAAAAGCCTTTCTTGCGAAACAAAGCATCAATATCATGTATTCTAATAAGAAGACTATGTTTACA
1 GAAAAGCCTTTCCTGCAAAACAAAGCATCAATATCATGTACCCTAATGAGAAAACTATGTTTACA
* * * ** * * * *
1222756 ATACCTAATCCTGAAAAAAATGGGGATTATTATCCGCATTCATGATTGTCTTATTTAAGAGACAA
66 ATACCTAATCTTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTAACTTAAGAGACAA
* * *
1222821 ACTTTGATTCTTTATAAAACGGTGGAAA
131 ACTTTGATTCTTTAAAAAATGGTGAAAA
* * * * * * * * **
1222849 GAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTACTGAAGGAAATGTAT-TTT
1 GAAAAGCCTTTCCTGC-AAAACAAAGCATCAATATCATGTACCCTAATG-A-GAAAACTATGTTT
** * * * * ** * *** * * * *
1222913 A-GGT-TCTCAATCCTGAAAAGAATGGAGACTGTTATGAGAATTGGCGCTTGTCTTATTTAAGGG
63 ACAATACCT-AATCTTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTAACTTAAGAG
** ** **
1222976 ATTAACTTTGATT-TTATGGAAAATAGG-GCGAA
127 ACAAACTTTGATTCTT-TAAAAAAT-GGTGAAAA
* *** * * * ** * * * * *
1223008 GAAATGAAATTCAATGCAAAAGAAAATCATCAATAGAATTTATCCTAATGAGGAGAA-TGTGCTT
1 GAAAAGCCTTTC-CTGCAAAA-CAAAGCATCAATATCATGTACCCTAATGA-GAAAACTATGTTT
* * * ** * * * * * * * *
1223072 A-TATACCTAATCAT-AAAATGAAAGAAGATCATTCCT-AGAATCCATGTTTGTCTCATTTGAG-
63 ACAATACCTAATCTTGAAAA-GAATGGGGATTACT-ATGAGTATTCATGTTTGTCTAACTTAAGA
* * ***
1223133 GCACGAACTTTGA--CTTTACAAAAACTGGCGGGGA
126 G-ACAAACTTTGATTCTTTA-AAAAA-TGGTGAAAA
* * * * *
1223167 -AAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCAAATGAGAATACTATGTTTAT
1 GAAAAGCCTTTCCTGCAAAA-CAAAGCATCAATATCATGTACCCTAATGAGAAAACTATGTTTAC
** * * * * * *
1223231 GGTACCTAATCCTAAAAAGAATGGGGATTACTTTGACTATTCATGTTTGTCTTATTTAAGAGACA
65 AATACCTAATCTTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTAACTTAAGAGACA
* * * *
1223296 AACTTTGATTCTATCAAAAACGGTGGAAA
130 AACTTTGATTCTTTAAAAAATGGTGAAAA
* * * * * **
1223325 GAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATTCTAATGA
1 GAAAAGCCTTTCCTGCAAAAC-AAAGCATCAATATCATGTACCCTAATGA
1223375 AGGGAATGTG
Statistics
Matches: 1322, Mismatches: 381, Indels: 175
0.70 0.20 0.09
Matches are distributed among these distances:
154 1 0.00
155 13 0.01
156 93 0.07
157 146 0.11
158 478 0.36
159 411 0.31
160 166 0.13
161 14 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (158 bp):
GAAAAGCCTTTCCTGCAAAACAAAGCATCAATATCATGTACCCTAATGAGAAAACTATGTTTACA
ATACCTAATCTTGAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTAACTTAAGAGACAA
ACTTTGATTCTTTAAAAAATGGTGAAAA
Found at i:1226224 original size:159 final size:157
Alignment explanation
Indices: 1225045--1239104 Score: 3936
Period size: 159 Copynumber: 88.9 Consensus size: 157
1225035 CTGGTGGGGA
* * * * * * *
1225045 AAAAGCTTTTTTTGCTAA-ATCAAAGCATCAATATCGTGTATCCTAATAGAA-AGACTATG-TTT
1 AAAAGCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTAA-GGAAGGGAATGTGTTTT
* * * * * * *
1225107 ATGGTACCTAATCCTGAAATGAATGGGGAATACTATAAGTATTCATGTTTGTCTTATTTAAGAGA
64 A-GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGAGA
* *
1225172 CAAACTTTGATTCTATCAAAAACGGTGGAAAG
127 CAAACTTTGATTTTA-CAAAAATGGTGGAAAG
* * * * *
1225204 AAATGCTTTTCTTGCAACACCAAAGCATCAATGTTATGTATCCTAATGATGGGAATGTGTTTTAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
* * * * * * * ** * * **
1225269 TTTCCCAATACTGAAAAGAATTGG-GACTGTTACGAGAATCGATACTTGTCTTACTTAAGGGATT
66 ATTCCTAATCCTGAAAAGAA-TGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGACA
* * *
1225333 AACTTTGAATTTA-AGGAAAATAAG-GCAAAG
129 AACTTTGATTTTACA--AAAAT-GGTGGAAAG
* ** * * * ** * * * * *
1225363 AGAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATGCTAA-TAAGGAGAATGTGCTTAT
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGG-GAATGTG-TTTT
* ** * * * ** * * * * *
1225427 A-ATGCCTAATTAT-AAAATAAAAGAAGATCGTTAAT-AAAATC-TGTATTTATCTTTTTTGAG-
64 AGATTCCTAATCCTGAAAA-GAATGGAGATTATT-ATGAGATTCATG--TTTGTCTTATTTAAGA
* ** * * *
1225487 GCACGAACTTACACTTTACAACAATTGGTAGG-GA-
125 G-ACAAACTTTGATTTTACAA-AAATGGT-GGAAAG
* * * * * * *
1225521 AAAAGCGTTTCTTATG-AA-A-TAAAGCATAAATATCATGTATTCTAATTAGAA--GACTATG-T
1 AAAAGCTTTTC-T-TGCAACACCAAAGCATCAATATCATGTATCCTAA--GGAAGGGAATGTGTT
* * * * * * * *
1225580 TCACAATACGTAATCCTGAAAAGAATGGGGATTACTATAAGTATTCATGTTTGTCTTATTTGAGA
62 TTA-GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGA
* *
1225645 GACAAACTTTGATTCTTTA-TAAAACGGTGGAAAG
125 GACAAACTTTGA-T-TTTACAAAAATGGTGGAAAG
* * * * * *
1225679 AAAAGCTTTTTTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTTAAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
* * * ** ** ** * * * **
1225744 -TTCCCAGTCCTGAAAAGAATAGAGGCTATTGCGAGAATAGATGCTTGTCTTATTTTAGGGATTA
66 ATTCCTAATCCTGAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAA
* **
1225808 ATTTTGATTTTA-AGGAAAA-GAAGGCAAAG
130 ACTTTGATTTTACA--AAAATGGTGG-AAAG
* * * * * * **
1225837 AAAAGATTTCCTTGCTAAGGA--AAATCATCAATATCATTTATCCTAA-TAAGAAAAATGTGTTT
1 AAAAGCTTTTCTTGC-AA-CACCAAAGCATCAATATCATGTATCCTAAGGAAG-GGAATGTGTTT
* * * * * * *
1225899 ATAG--TGCTAATCAC--AAAATGAATGAAGATCATTACGAGAATCCATGTTTGTCTCATTT-GG
63 -TAGATTCCTAATC-CTGAAAA-GAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAG
* * * * * *
1225959 GGCACGAACTTAGACTTTACAAGAATTGGTGG--GG
124 AG-ACAAACTTTGATTTTACAA-AAATGGTGGAAAG
* * ** * *
1225993 AAAAGCCTTTCTTGCGAA-ACCAAAGCAACAATATCATGTATCCTAATGAGAAGACAACGT-TTA
1 AAAAGCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTAA-G-GAAGGGAATGTGTTT
* * * * * * * *
1226056 T-GGTACCTAATCATGAAAAGAATGGGGATTACTATAAGTTTTCATGCTTGTCTTATTTAAGAGA
63 TAGATTCCTAATCCTGAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGAGA
*
1226120 CAAACTTTGATTTTATCAAAAATGGTGGAAAC
127 CAAACTTTGATTTTA-CAAAAATGGTGGAAAG
* *
1226152 AAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGTATCCTAAGGAAGGGAATGTGTTTTAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
* * * * * ** * ** * * **
1226217 TTTCCTAATCCTAAAAAAAATGGAGACTGTTGCGAGAATTGATACTTGTCTTTTTTAAGGGATGA
66 ATTCCTAATCCTGAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAA
* *
1226282 ACTTTGATTTTA-AGGAAAATAAG-GCAAAG
130 ACTTTGATTTTACA--AAAAT-GGTGGAAAG
* * * * * ** * * *
1226311 AAAA-CAATTCCATGTAAAAGAAAATCATCAATATCATTTATCCAAATGAGAA--GAATGTGCTT
1 AAAAGC-TTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA-G-GAAGGGAATGTG-TT
* * * * ** * * *
1226373 ATAG-TGCCTAA-CCAT-AAAAGGAAAGAAGATCT-TTACAAGAATCATTGTTTGTCTCATTTGA
62 TTAGATTCCTAATCC-TGAAAA-GAATGGAGAT-TATTATGAGATTCA-TGTTTGTCTTATTTAA
* * * * *
1226434 G-GCACGAACTTAGACTTTACAAAATTGGTAGG-GA-
123 GAG-ACAAACTTTGATTTTACAAAAATGGT-GGAAAG
* ** * ** * * *
1226468 AAAAGCCTTTCTT--ATTGAACAAAGCATCAATATCGA-CAATCTTAATGAGAA--GACTATG-T
1 AAAAGCTTTTCTTGCA-ACACCAAAGCATCAATATC-ATGTATCCTAA-G-GAAGGGAATGTGTT
* * * * * * *
1226527 TTATGGTACCTAATCCTAAAAAGATTGG-GATTACTGTGAGTACTCATGTTTGTCTTATTTAAGA
62 TTA-GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGA
*
1226591 GACAAACTTTGATTATTTA-TAAAATGGTGGAAAG
125 GACAAACTTTGA-T-TTTACAAAAATGGTGGAAAG
* * * * * *
1226625 AAAATCTTTACTTGCGACCCCAAAGCATCACT-TGCCATGTATCCTAATGAAGGGAATGTGTTTT
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATAT--CATGTATCCTAAGGAAGGGAATGTGTTTT
* * * * * * * * * *
1226689 AGGTTCCCAATCCTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTATCTTATTTAAGGGAT
64 AGATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGAC
* * *
1226754 TAACTTTGATTTTA-AGGAAAATAGG-GCAAGG
128 AAACTTTGATTTTACA--AAAAT-GGTGGAAAG
** * * ** * * *
1226785 AAAAGAATTCCATGCAA-AGGAAAATCGTCAATATCATTTATCCT-AGTG-AGGAGAATGTGCTT
1 AAAAGCTTTTCTTGCAACA-CCAAAGCATCAATATCATGTATCCTAAG-GAAGG-GAATGTG-TT
* * * * * * * * *
1226847 ATAG-TGCCTGATCAT-AAAATGAAAGAAGATCATTACT-AGAATCCATGTTTGTCTTATTTGAG
62 TTAGATTCCTAATCCTGAAAA-GAATGGAGATTATTA-TGAG-ATTCATGTTTGTCTTATTTAAG
* * * * **
1226909 -GCACGAACTTAGACTTTACAAAAACTAGTGGGGA-
124 AG-ACAAACTTTGATTTTACAAAAA-TGGTGGAAAG
* * * * *
1226943 AAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAGG-AGAAGACTATG-TTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAG-GGAATGTGTTTTA
* * * * *
1227006 TGATACCTAAT-CTAGAAAAGAGTGGGGATTACTATAAGTATTCATGTTTGTCTTATTTAAGAGA
65 -GATTCCTAATCCT-GAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGAGA
** *
1227070 CAAACTTTGATTCCATCAAAAACGGTGGAAAG
127 CAAACTTTGATTTTA-CAAAAATGGTGGAAAG
* * *
1227102 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGGAATGTGTTTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA-GGAAGGGAATGTGTTTTA
* * * * * * * * * * *
1227167 GGTTCAC-AATCTTAAAAAGAATGGAGACTGTTACGAGAATTGATGCTTATCTTATTTAAGGGAT
65 GATTC-CTAATCCTGAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGAGAC
* * * * *
1227231 TAACGTCGATTTTA-AGGAAAATAGG-GCAAGG
128 AAACTTTGATTTTACA--AAAAT-GGTGGAAAG
** * ** * * *
1227262 AAAAG-AATTCTATGCAAAAAAAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGCTT
1 AAAAGCTTTTCT-TGC-AACACCAAAGCATCAATATCATGTATCCTAAGGAAGG-GAATGTG-TT
* * * * * * * ** * *
1227325 ATA-ATACCTAATCAT-AATATGAAAGAAGATCATTACT-AGAAACCATGTTTGTCTCATTTGAG
62 TTAGATTCCTAATCCTGAA-AAGAATGGAGATTATTA-TGAG-ATTCATGTTTGTCTTATTTAAG
* * **
1227387 -GCACAAACTTAGACTTTACAAAAATTGGTGGGGA-
124 AG-ACAAACTTTGATTTTACAAAAA-TGGTGGAAAG
* * * * *** *
1227421 AAAATCCTTTCTTGCGAA-A-CAAAGCATCAATATCGTGTATCCTAAATTGAAGACTATGTG-TA
1 AAAAGCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCT-AA-GGAAGGGAATGTGTTT
* * * * * * * *
1227483 CA-ATACCTAATCCTTAAAAGAATGGGGATTACTATGAGTATTAATATTTGTCTCATTTAAGAGA
63 TAGATTCCTAATCCTGAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGAGA
* * **
1227547 CTAACTTTGATTCTACCAAAACCGGTGGAAAG
127 CAAACTTTGATTTTA-CAAAAATGGTGGAAAG
* * * * * * *
1227579 AAAAGCTTTTCTTG-AGTCAACAAAGCGTCAATTTGATGTATCCTAATGAA-AGAATGTGTTTTA
1 AAAAGCTTTTCTTGCA-ACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTA
* * * * * * * * * *
1227642 GGTTCCTATTCCTGAAAA-AATGGGGACTGTTACGAGAATCGGTGCTTGTCATATTTAAG-GA-A
65 GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGACA
*
1227704 TTAACTTTGATTTTA-AGGAAAATAGG-GCAAAG
129 --AACTTTGATTTTACA--AAAAT-GGTGGAAAG
* * * * ** * * * * *
1227736 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG-A-GG-A-G-CTTATA-
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
* * * * * * * * * *
1227795 ATGCCTAATCGT-AAAATGAAAGAAGATCATTACTAAAATCCATGTTTGTCTCATTT--GAGGCA
66 ATTCCTAATCCTGAAAA-GAATGGAGATTATTA-TGAGATTCATGTTTGTCTTATTTAAGAGACA
* * * *
1227857 TGAACTTAGACTTTACAAAAACTAGT-G-AGG
129 --AACTTTGATTTTACAAAAA-TGGTGGAAAG
* * * *
1227887 AAAAAGACTTTT-TTGCGAGACCAAAGCATCAATATCATGTATCCTAATGAGAAGAGTATGT-TT
1 -AAAAG-CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA-G-GAAGGGAATGTGTT
* * * * * *
1227950 AT-GATACCAAAT-CTAGAAAAGAATGGGGATTACTATAAGTATTCATGTTTGTCTTATTTAAGA
62 TTAGATTCCTAATCCT-GAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGA
** *
1228013 GACAAACTTTGATTCCATCAAAAACGGTGGAAAG
125 GACAAACTTTGATTTTA-CAAAAATGGTGGAAAG
** *
1228047 AAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATGTATCCTAATGAAAGGGAATGTGTTTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA-GGAAGGGAATGTGTTTTA
* * * * * * * * * * **
1228112 GGTTCCCAATCCTAAAAAGAATGGAAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATT
65 GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGACA
** * *
1228177 AACTTTGATTTTGAGGAAAATAGG-GCAAGG
129 AACTTTGATTTT-ACAAAAAT-GGTGGAAAG
** * ** * ** * * * *
1228207 AAAAGAATTCCAAGCAAAAAAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGCTTGT
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGG-GAATGTG-TTTT
* * * *** * * * *
1228271 A-ATGCCTAATCAT-AATATGAAAAAAGATCATTACT-AGAATCCATGTTTGTCTCATTTGAG-G
64 AGATTCCTAATCCTGAA-AAGAATGGAGATTATTA-TGAG-ATTCATGTTTGTCTTATTTAAGAG
* * * * **
1228332 CACGAACTTAGACTTTACAAAAACTAGTGGGGA-
126 -ACAAACTTTGATTTTACAAAAA-TGGTGGAAAG
* * * * * *
1228365 AAAATCCTTTCTTGCGAA-ACCAAAGCATCAATATCACGTATCCTAATGAGAAGAGTATGT-TTA
1 AAAAGCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTAA-G-GAAGGGAATGTGTTT
* * * *
1228428 T-GATACCTAAT-CTAGAAAAGAATGGGGATTACTATAAGTATTCATGTTTGTCTTATTTAAGAG
63 TAGATTCCTAATCCT-GAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGAG
* ** *
1228491 ATAAACTTTGATTCCATCAAAAACGGTGGAAAG
126 ACAAACTTTGATTTTA-CAAAAATGGTGGAAAG
* * *
1228524 AAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAAAGGGAATATGTTTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA-GGAAGGGAATGTGTTTTA
* * * * * * * * *
1228589 GGTTTCC-AATCCTAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
65 -GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGAC
* * * * *
1228653 TAACTTTGATTTTAAGAAAAATAAG-GCAAGG
128 AAACTTTGATTTT-ACAAAAAT-GGTGGAAAG
** * * * ** * * * *
1228684 AAAAGAATTCCATGGAA-AAAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGCTTGT
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGG-GAATGTG-TTTT
* * * * * * * * **
1228747 A-ATGCCTAATCAT-AATATGAAAGAAGATCATTA-GTAGAATACATGTTTGTCTCATTGGAG-G
64 AGATTCCTAATCCTGAA-AAGAATGGAGATTATTATG-AG-ATTCATGTTTGTCTTATTTAAGAG
* * * *
1228808 CACGAACTTAGACTTTACAAAAATTGGTAGG-GA-
126 -ACAAACTTTGATTTTACAAAAA-TGGT-GGAAAG
* * * * * * *
1228841 AAAATCCTTTCTTGTGAA-A-CAAAGCATCAATATCGTGTATCCTAA--ATAGAAGACTATG-TT
1 AAAAGCTTTTCTTG-CAACACCAAAGCATCAATATCATGTATCCTAAGGA-AG-GGAATGTGTTT
* * * * * * *
1228901 TACAATACCTAATCCTTAAAGGAATGGGGATTACTATGAGTATTCATGTTTGTCTTATGTAAGAG
63 TA-GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGAG
*
1228966 ACAAACTTTGATTCTTTA-AAAAATGGGGGAAAG
126 ACAAACTTTGA-T-TTTACAAAAATGGTGGAAAG
* * * *
1228999 AAAAGCTTTTCTTGCGACACCAAAGCGTCAATTTGATGTATCCT-AGTGAAGGGAATGTGTTTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAG-GAAGGGAATGTGTTTTA
* * * * * * * * **
1229063 GGTTCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATT
65 GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGACA
* * **
1229128 AACATTGATTTTAAAGGAAAAT-AAGGAAA-
129 AACTTTGATTTTACA--AAAATGGTGGAAAG
* * * * * * ** * * * * * *
1229157 AGAAGATTTCCCTACAAAAGAAAATCATCAGTATCATTTATCCAAATTAGAA--GAATGTGCTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA--GGAAGGGAATGTG-TTT
* * * * * * * *
1229220 TA-ATGCGTAATCAC--AAATTGAATGAAGATTATTACT-AGAATCGATATTTGCCTTATTT-GG
63 TAGATTCCTAATC-CTGAAA-AGAATGGAGATTATTA-TGAGATTC-ATGTTTGTCTTATTTAAG
* * * * *
1229280 GGTGCGAACTTTGACTTTACAAAAACTGGTGG--GG
124 AG-ACAAACTTTGATTTTACAAAAA-TGGTGGAAAG
* * * *
1229314 TAAAAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCGTGTATCCTAATAGGAA--GACTATG-T
1 -AAAAGCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCT-A-AGGAAGGGAATGTGTT
* * * * * *
1229375 TTATGGTACCTAAT-CTAGAAAAGAATGGGGATTACTGTTAGTATTCATGTTTGTCTTATTTAAG
62 TTA-GATTCCTAATCCT-GAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAG
* *
1229439 AGACAAACTTTGATTCTATCAAAAACGGTGGAAAG
124 AGACAAACTTTGATTTTA-CAAAAATGGTGGAAAG
* * * **
1229474 AAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
* * * * * * * * *
1229539 TTTCCCAATCCTGGAAAGAAT-GAGGACTGTTACGAGAATCGATGCTTGTCTTATTTAAG-GAGT
66 ATTCCTAATCCTGAAAAGAATGGA-GATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGA-C
* * **
1229602 TAACTTTGATTTTAAGGAAAAATAGG-GCCAAG
128 AAACTTTGATTTT-A-CAAAAAT-GGTGGAAAG
** * * ** * * * * * *
1229634 AAAAGAATTCCATGC-ACAAGAAAATCATTAATATCATTTATCCTAATG-AGGAGAATGTACTTA
1 AAAAGCTTTTCTTGCAAC-ACCAAAGCATCAATATCATGTATCCTAAGGAAGG-GAATGT-GTTT
* * * * * * *
1229697 TA-ATGCCTAATCAT-AAAATGAAAGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTAAG-
63 TAGATTCCTAATCCTGAAAA-GAATGGAGATTATTA-TGAG-ATTCATGTTTGTCTTATTTAAGA
* * * * *
1229758 GCACGAACTTAGACTTTGCAAAAATTGGTAGGGAA-
125 G-ACAAACTTTGATTTTACAAAAA-TGGT-GGAAAG
* * * ** *
1229793 AATA-CCTTTCTTGCATA-A--AAAGCATCAATATCGTGTATCCTAACGAGAAGACAATGT-TTA
1 AAAAGCTTTTCTTGCA-ACACCAAAGCATCAATATCATGTATCCTAA-G-GAAGGGAATGTGTTT
* * * *
1229853 CA-ATAT-CTAATCCTAAAAAGAATAGG-GATTATTATGAGTATTCATGATTGTCTTATTTAGGA
63 TAGAT-TCCTAATCCTGAAAAGAAT-GGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGA
* * *
1229915 GACAAACTTTGATTCTTTA-TAAAACGTTGGAAAG
125 GACAAACTTTGA-T-TTTACAAAAATGGTGGAAAG
* * * ** * * * *
1229949 AAAAGCTTTTGTTACGACACCAAAGCATCAATGCCGTGTATTCTAATGAAGGGAATATGTTTTAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
* * * * * * * **
1230014 ATTCCCAATCCTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
66 ATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGACAA
* *
1230079 ACTTTGATTTTA-AGGAAAATAGTGCAAAG
130 ACTTTGATTTTACA--AAAATGGTGGAAAG
** * * ** ** * * * *
1230108 AAAAGAATTCCATGCAA-AAAAAATTATCAATATCATTTATCCTAATG-A-GG-A-G-CTTGTAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
* * * * * ** * * * *
1230167 -TGCCTAATCAT-AAAATGAAAGAAGATCATTACAAGAATCCGTGTTTGTCTCATTTGAG-GCAC
66 ATTCCTAATCCTGAAAA-GAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGAG-AC
* *
1230229 AAACTTAT-ACTTTACAAAAATTGGTAGG-GA-
128 AAACTT-TGATTTTACAAAAA-TGGT-GGAAAG
* * * * *
1230259 AAAAGCCTTTCTTG------CAAAGCATCCATATCGTGTATCCTAATAGGAA--GACTATG-TTT
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCT-A-AGGAAGGGAATGTGTTTT
* * * *
1230315 ATGGTACCTAATCCT-ACAAAGAATAGG-GATTACTATGAGTATTCATG-TTGTCTTTTTTAAGA
64 A-GATTCCTAATCCTGA-AAAGAAT-GGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGA
* * **
1230377 GACAAACTTTTATTCTATCAAAAACAGTGGAAAG
125 GACAAACTTTGATTTTA-CAAAAATGGTGGAAAG
* * * * *** *
1230411 AAAAGCTTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCCATTAAAAGGAATGTGTTTTAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
** * * * * * *
1230476 -TTTTTCAATCCTGAAAAGAATGTG-GACTGTTACGAGAATCGGTGCTTGTCTTATTTAAG-GA-
66 ATTCCT-AATCCTGAAAAGAATG-GAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGAC
* *
1230537 ATTAACTTTGATTTTAAGGAAAAATAGG-GCAAAG
128 A--AACTTTGATTTT-A-CAAAAAT-GGTGGAAAG
** * * * ** * * * * * * *
1230571 AAAAGAATTCCATGCAAAAGAAAATCATCAATGTCATTTATCCAAATG-AGGAGAATGTGCTTAA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGG-GAATGTGTTTTA
* * * * * * * * * * *
1230635 AATGCCTAATCGT-AAAATGAAAGAAGATCATTACTAAAATCCATGTTTGTCTCATTT--GAGGC
65 GATTCCTAATCCTGAAAA-GAATGGAGATTATTA-TGAGATTCATGTTTGTCTTATTTAAGAGAC
* * * *
1230697 ATGAACTTAGACTTTACAAAAACTAGT-G-AGG
128 A--AACTTTGATTTTACAAAAA-TGGTGGAAAG
* * * *
1230728 AAAAAGACTTTT-TTGCGAGACCAAAGCATCAATATCATGTATCCTAATGAGAAGAGTATGT-TT
1 -AAAAG-CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA-G-GAAGGGAATGTGTT
* * * * * *
1230791 AT-GATACCAAAT-CTAGAAAAGAATGGGGATTACTATAAGTATTCATGTTTGTCTTATTTAAGA
62 TTAGATTCCTAATCCT-GAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGA
** *
1230854 GACAAACTTTGATTCCATCAAAAACGGTGGAAAG
125 GACAAACTTTGATTTTA-CAAAAATGGTGGAAAG
** *
1230888 AAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATGTATCCTAATGAAAGGGAATGTGTTTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA-GGAAGGGAATGTGTTTTA
* * * * * * * * * * **
1230953 GGTTCCCAATCCTAAAAAGAATGGAAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATT
65 GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGACA
** * *
1231018 AACTTTGATTTTGAGGAAAATAGG-GCAAGG
129 AACTTTGATTTT-ACAAAAAT-GGTGGAAAG
** * ** * ** * * * *
1231048 AAAAGAATTCCAAGCAAAAAAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGCTTGT
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGG-GAATGTG-TTTT
* * * *** * * * *
1231112 A-ATGCCTAATCAT-AATATGAAAAAAGATCATTACT-AGAATCCATGTTTGTCTCATTTGAG-G
64 AGATTCCTAATCCTGAA-AAGAATGGAGATTATTA-TGAG-ATTCATGTTTGTCTTATTTAAGAG
* * * * **
1231173 CACGAACTTAGACTTTACAAAAACTAGTGGGGA-
126 -ACAAACTTTGATTTTACAAAAA-TGGTGGAAAG
* * * * * *
1231206 AAAATCCTTTCTTGCGAA-ACCAAAGCATCAATATCACGTATCCTAATGAGAAGAGTATGT-TTA
1 AAAAGCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTAA-G-GAAGGGAATGTGTTT
* * * *
1231269 T-GATACCTAAT-CTAGAAAAGAATGGGGATTACTATAAGTATTCATGTTTGTCTTATTTAAGAG
63 TAGATTCCTAATCCT-GAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGAG
* ** *
1231332 ATAAACTTTGATTCCATCAAAAACGGTGGAAAG
126 ACAAACTTTGATTTTA-CAAAAATGGTGGAAAG
* * *
1231365 AAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAAAGGGAATATGTTTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA-GGAAGGGAATGTGTTTTA
* * * * * * * * *
1231430 GGTTTCC-AATCCTAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
65 -GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGAC
* * * *
1231494 TAACTTTGATTTTA-AGAAAACTAAG-GCAAGG
128 AAACTTTGATTTTACA-AAAA-T-GGTGGAAAG
** * * * * ** * * * *
1231525 AAAAGAATTCCATGGAAAAAAAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGCTTG
1 AAAAGCTTTTC-TTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGG-GAATGTG-TTT
* * * * * * * * **
1231589 TA-ATGCCTAATCAT-AATATGAAAGAAGATCATTA-GTAGAATACATGTTTGTCTCATTGGAG-
63 TAGATTCCTAATCCTGAA-AAGAATGGAGATTATTATG-AG-ATTCATGTTTGTCTTATTTAAGA
* * * *
1231650 GCACGAACTTAGACTTTACAAAAATTGGTAGG-GA-
125 G-ACAAACTTTGATTTTACAAAAA-TGGT-GGAAAG
* * * * * * *
1231684 AAAATCCTTTCTTGTGAA-A-CAAAGCATCAATATCGTGTATCCTAA--ATAGAAGACTATG-TT
1 AAAAGCTTTTCTTG-CAACACCAAAGCATCAATATCATGTATCCTAAGGA-AG-GGAATGTGTTT
* * * * * * *
1231744 TACAATACCTAATCCTTAAAGGAATGGGGATTACTATGAGTATTCATGTTTGTCTTATGTAAGAG
63 TA-GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGAG
*
1231809 ACAAACTTTGATTCTTTA-AAAAATGGGGGAAAG
126 ACAAACTTTGA-T-TTTACAAAAATGGTGGAAAG
* * * *
1231842 AAAAGCTTTTCTTGCGACACCAAAGCGTCAATTTGATGTATCCT-AGTGAAGGGAATGTGTTTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAG-GAAGGGAATGTGTTTTA
* * * * * * * * **
1231906 GGTTCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATT
65 GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGACA
* * **
1231971 AACATTGATTTTAAAGGAAAAT-AAGGAAA-
129 AACTTTGATTTTACA--AAAATGGTGGAAAG
* * * * * * ** * * * * * *
1232000 AGAAGATTTCCCTACAAAAGAAAATCATCAGTATCATTTATCCAAATTAGAA--GAATGTGCTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA--GGAAGGGAATGTG-TTT
* * * * * * * *
1232063 TA-ATGCGTAATCAC--AAATTGAATGAAGATTATTACT-AGAATCGATATTTGCCTTATTT-GG
63 TAGATTCCTAATC-CTGAAA-AGAATGGAGATTATTA-TGAGATTC-ATGTTTGTCTTATTTAAG
* * * * *
1232123 GGTGCGAACTTTGACTTTACAAAAACTGGTGG--GG
124 AG-ACAAACTTTGATTTTACAAAAA-TGGTGGAAAG
* * * *
1232157 TAAAAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCGTGTATCCTAATAGGAA--GACTATG-T
1 -AAAAGCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCT-A-AGGAAGGGAATGTGTT
* * * * * *
1232218 TTATGGTACCTAAT-CTAGAAAAGAATGGGGATTACTGTTAGTATTCATGTTTGTCTTATTTAAG
62 TTA-GATTCCTAATCCT-GAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAG
* *
1232282 AGACAAACTTTGATTCTATCAAAAACGGTGGAAAG
124 AGACAAACTTTGATTTTA-CAAAAATGGTGGAAAG
* * * **
1232317 AAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
* * * * * * * * *
1232382 TTTCCCAATCCTGGAAAGAAT-GAGGACTGTTACGAGAATCGATGCTTGTCTTATTTAAG-GAGT
66 ATTCCTAATCCTGAAAAGAATGGA-GATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGA-C
* * **
1232445 TAACTTTGATTTTAAGGAAAAATAGG-GCCAAG
128 AAACTTTGATTTT-A-CAAAAAT-GGTGGAAAG
** * * ** * * * * * *
1232477 AAAAGAATTCCATGC-ACAAGAAAATCATTAATATCATTTATCCTAATG-AGGAGAATGTACTTA
1 AAAAGCTTTTCTTGCAAC-ACCAAAGCATCAATATCATGTATCCTAAGGAAGG-GAATGT-GTTT
* * * * * * *
1232540 TA-ATGCCTAATCAT-AAAATGAAAGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTAAG-
63 TAGATTCCTAATCCTGAAAA-GAATGGAGATTATTA-TGAG-ATTCATGTTTGTCTTATTTAAGA
* * * * *
1232601 GCACGAACTTAGACTTTGCAAAAATTGGTAGGGAA-
125 G-ACAAACTTTGATTTTACAAAAA-TGGT-GGAAAG
* * * ** *
1232636 AATA-CCTTTCTTGCATA-A--AAAGCATCAATATCGTGTATCCTAACGAGAAGACAATGT-TTA
1 AAAAGCTTTTCTTGCA-ACACCAAAGCATCAATATCATGTATCCTAA-G-GAAGGGAATGTGTTT
* * * *
1232696 CA-ATAT-CTAATCCTAAAAAGAATAGG-GATTATTATGAGTATTCATGATTGTCTTATTTAGGA
63 TAGAT-TCCTAATCCTGAAAAGAAT-GGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGA
* * *
1232758 GACAAACTTTGATTCTTTA-TAAAACGTTGGAAAG
125 GACAAACTTTGA-T-TTTACAAAAATGGTGGAAAG
* * * ** * * * *
1232792 AAAAGCTTTTGTTACGACACCAAAGCATCAATGCCGTGTATTCTAATGAAGGGAATATGTTTTAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
* * * * * * * **
1232857 ATTCCCAATCCTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
66 ATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGACAA
* *
1232922 ACTTTGATTTTA-AGGAAAATAGTGCAAAG
130 ACTTTGATTTTACA--AAAATGGTGGAAAG
** * * ** ** * * * *
1232951 AAAAGAATTCCATGCAA-AAAAAATTATCAATATCATTTATCCTAATG-A-GG-A-G-CTTGTAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
* * * * * ** * * * *
1233010 -TGCCTAATCAT-AAAATGAAAGAAGATCATTACAAGAATCCGTGTTTGTCTCATTTGAG-GCAC
66 ATTCCTAATCCTGAAAA-GAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGAG-AC
* *
1233072 AAACTTAT-ACTTTACAAAAATTGGTAGG-GA-
128 AAACTT-TGATTTTACAAAAA-TGGT-GGAAAG
* * * * * *
1233102 AAAAGCCTTTCTTGCAAAACCAAAGCATCCATATCGTGTATCCTAATAGGAA--GACTATG-TTT
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCT-A-AGGAAGGGAATGTGTTTT
* * * *
1233164 ATGGTACCTAATCCT-ACAAAGAATAGG-GATTACTATGAGTATTCATG-TTGTCTTTTTTAAGA
64 A-GATTCCTAATCCTGA-AAAGAAT-GGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGA
* * **
1233226 GACAAACTTTTATTCTATCAAAAACAGTGGAAAG
125 GACAAACTTTGATTTTA-CAAAAATGGTGGAAAG
* * * * *** *
1233260 AAAAGCTTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCCATTAAAAGGAATGTGTTTTAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
** * * * * * *
1233325 -TTTTTCAATCCTGAAAAGAATGTG-GACTGTTACGAGAATCGGTGCTTGTCTTATTTAAG-GA-
66 ATTCCT-AATCCTGAAAAGAATG-GAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGAC
* *
1233386 ATTAACTTTGATTTTAAGGAAAAATAGG-GCAAAG
128 A--AACTTTGATTTT-A-CAAAAAT-GGTGGAAAG
** * * * ** * * * * * * *
1233420 AAAAGAATTCCATGCAAAAGAAAATCATCAATGTCATTTATCCAAATG-AGGAGAATGTGCTTAA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGG-GAATGTGTTTTA
* * * * * * * * * * *
1233484 AATGCCTAATCGT-AAAATGAAAGAAGATCATTACTAAAATCCATGTTTGTCTCATTT--GAGGC
65 GATTCCTAATCCTGAAAA-GAATGGAGATTATTA-TGAGATTCATGTTTGTCTTATTTAAGAGAC
* * * *
1233546 ATGAACTTAGACTTTACAAAAACTAGT-G-AGG
128 A--AACTTTGATTTTACAAAAA-TGGTGGAAAG
* * * *
1233577 AAAAAGACTTTT-TTGCGAGACCAAAGCATCAATATCATGTATCCTAATGAGAAGAGTATGT-TT
1 -AAAAG-CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA-G-GAAGGGAATGTGTT
* * * * * *
1233640 AT-GATACCAAAT-CTAGAAAAGAATGGGGATTACTATAAGTATTCATGTTTGTCTTATTTAAGA
62 TTAGATTCCTAATCCT-GAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGA
** *
1233703 GACAAACTTTGATTCCATCAAAAACGGTGGAAAG
125 GACAAACTTTGATTTTA-CAAAAATGGTGGAAAG
** *
1233737 AAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATGTATCCTAATGAAAGGGAATGTGTTTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA-GGAAGGGAATGTGTTTTA
* * * * * * * * * * **
1233802 GGTTCCCAATCCTAAAAAGAATGGAAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATT
65 GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGACA
** * *
1233867 AACTTTGATTTTGAGGAAAATAGG-GCAAGG
129 AACTTTGATTTT-ACAAAAAT-GGTGGAAAG
** * ** * ** * * * *
1233897 AAAAGAATTCCAAGCAAAAAAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGCTTGT
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGG-GAATGTG-TTTT
* * * *** * * * *
1233961 A-ATGCCTAATCAT-AATATGAAAAAAGATCATTACT-AGAATCCATGTTTGTCTCATTTGAG-G
64 AGATTCCTAATCCTGAA-AAGAATGGAGATTATTA-TGAG-ATTCATGTTTGTCTTATTTAAGAG
* * * * **
1234022 CACGAACTTAGACTTTACAAAAACTAGTGGGGA-
126 -ACAAACTTTGATTTTACAAAAA-TGGTGGAAAG
* * * * * *
1234055 AAAATCCTTTCTTGCGAA-ACCAAAGCATCAATATCACGTATCCTAATGAGAAGAGTATGT-TTA
1 AAAAGCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTAA-G-GAAGGGAATGTGTTT
* * * *
1234118 T-GATACCTAAT-CTAGAAAAGAATGGGGATTACTATAAGTATTCATGTTTGTCTTATTTAAGAG
63 TAGATTCCTAATCCT-GAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGAG
* ** *
1234181 ATAAACTTTGATTCCATCAAAAACGGTGGAAAG
126 ACAAACTTTGATTTTA-CAAAAATGGTGGAAAG
* * *
1234214 AAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAAAGGGAATATGTTTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA-GGAAGGGAATGTGTTTTA
* * * * * * * * *
1234279 GGTTTCC-AATCCTAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
65 -GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGAC
* * * *
1234343 TAACTTTGATTTTA-AGAAAACTAAG-GCAAGG
128 AAACTTTGATTTTACA-AAAA-T-GGTGGAAAG
** * * * * ** * * * *
1234374 AAAAGAATTCCATGGAAAAAAAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGCTTG
1 AAAAGCTTTTC-TTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGG-GAATGTG-TTT
* * * * * * * * **
1234438 TA-ATGCCTAATCAT-AATATGAAAGAAGATCATTA-GTAGAATACATGTTTGTCTCATTGGAG-
63 TAGATTCCTAATCCTGAA-AAGAATGGAGATTATTATG-AG-ATTCATGTTTGTCTTATTTAAGA
* * * *
1234499 GCACGAACTTAGACTTTACAAAAATTGGTAGG-GA-
125 G-ACAAACTTTGATTTTACAAAAA-TGGT-GGAAAG
* * * * * * *
1234533 AAAATCCTTTCTTGTGAA-A-CAAAGCATCAATATCGTGTATCCTAA--ATAGAAGACTATG-TT
1 AAAAGCTTTTCTTG-CAACACCAAAGCATCAATATCATGTATCCTAAGGA-AG-GGAATGTGTTT
* * * * * * *
1234593 TACAATACCTAATCCTTAAAGGAATGGGGATTACTATGAGTATTCATGTTTGTCTTATGTAAGAG
63 TA-GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGAG
*
1234658 ACAAACTTTGATTCTTTA-AAAAATGGGGGAAAG
126 ACAAACTTTGA-T-TTTACAAAAATGGTGGAAAG
* * * *
1234691 AAAAGCTTTTCTTGCGACACCAAAGCGTCAATTTGATGTATCCT-AGTGAAGGGAATGTGTTTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAG-GAAGGGAATGTGTTTTA
* * * * * * * * **
1234755 GGTTCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATT
65 GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGACA
* * **
1234820 AACATTGATTTTAAAGGAAAAT-AAGGAAA-
129 AACTTTGATTTTACA--AAAATGGTGGAAAG
* * * * * * ** * * * * * *
1234849 AGAAGATTTCCCTACAAAAGAAAATCATCAGTATCATTTATCCAAATTAGAA--GAATGTGCTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA--GGAAGGGAATGTG-TTT
* * * * * * * *
1234912 TA-ATGCGTAATCAC--AAATTGAATGAAGATTATTACT-AGAATCGATATTTGCCTTATTT-GG
63 TAGATTCCTAATC-CTGAAA-AGAATGGAGATTATTA-TGAGATTC-ATGTTTGTCTTATTTAAG
* * * * *
1234972 GGTGCGAACTTTGACTTTACAAAAACTGGTGG--GG
124 AG-ACAAACTTTGATTTTACAAAAA-TGGTGGAAAG
* * * *
1235006 TAAAAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCGTGTATCCTAATAGGAA--GACTATG-T
1 -AAAAGCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCT-A-AGGAAGGGAATGTGTT
* * * * * *
1235067 TTATGGTACCTAAT-CTAGAAAAGAATGGGGATTACTGTTAGTATTCATGTTTGTCTTATTTAAG
62 TTA-GATTCCTAATCCT-GAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAG
* *
1235131 AGACAAACTTTGATTCTATCAAAAACGGTGGAAAG
124 AGACAAACTTTGATTTTA-CAAAAATGGTGGAAAG
* * * **
1235166 AAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
* * * * * * * * *
1235231 TTTCCCAATCCTGGAAAGAAT-GAGGACTGTTACGAGAATCGATGCTTGTCTTATTTAAG-GAGT
66 ATTCCTAATCCTGAAAAGAATGGA-GATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGA-C
* * **
1235294 TAACTTTGATTTTAAGGAAAAATAGG-GCCAAG
128 AAACTTTGATTTT-A-CAAAAAT-GGTGGAAAG
** * * ** * * * * * *
1235326 AAAAGAATTCCATGC-ACAAGAAAATCATTAATATCATTTATCCTAATG-AGGAGAATGTACTTA
1 AAAAGCTTTTCTTGCAAC-ACCAAAGCATCAATATCATGTATCCTAAGGAAGG-GAATGT-GTTT
* * * * * * *
1235389 TA-ATGCCTAATCAT-AAAATGAAAGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTAAG-
63 TAGATTCCTAATCCTGAAAA-GAATGGAGATTATTA-TGAG-ATTCATGTTTGTCTTATTTAAGA
* * * * *
1235450 GCACGAACTTAGACTTTGCAAAAATTGGTAGGGAA-
125 G-ACAAACTTTGATTTTACAAAAA-TGGT-GGAAAG
* * * ** *
1235485 AATA-CCTTTCTTGCATA-A--AAAGCATCAATATCGTGTATCCTAACGAGAAGACAATGT-TTA
1 AAAAGCTTTTCTTGCA-ACACCAAAGCATCAATATCATGTATCCTAA-G-GAAGGGAATGTGTTT
* * * *
1235545 CA-ATAT-CTAATCCTAAAAAGAATAGG-GATTATTATGAGTATTCATGATTGTCTTATTTAGGA
63 TAGAT-TCCTAATCCTGAAAAGAAT-GGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGA
* * *
1235607 GACAAACTTTGATTCTTTA-TAAAACGTTGGAAAG
125 GACAAACTTTGA-T-TTTACAAAAATGGTGGAAAG
* * * ** * * * *
1235641 AAAAGCTTTTGTTACGACACCAAAGCATCAATGCCGTGTATTCTAATGAAGGGAATATGTTTTAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
* * * * * * * **
1235706 ATTCCCAATCCTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
66 ATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGACAA
* *
1235771 ACTTTGATTTTA-AGGAAAATAGTGCAAAG
130 ACTTTGATTTTACA--AAAATGGTGGAAAG
** * * ** ** * * * *
1235800 AAAAGAATTCCATGCAA-AAAAAATTATCAATATCATTTATCCTAATG-A-GG-A-G-CTTGTAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
* * * * * ** * * * *
1235859 -TGCCTAATCAT-AAAATGAAAGAAGATCATTACAAGAATCCGTGTTTGTCTCATTTGAG-GCAC
66 ATTCCTAATCCTGAAAA-GAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGAG-AC
* *
1235921 AAACTTAT-ACTTTACAAAAATTGGTAGG-GA-
128 AAACTT-TGATTTTACAAAAA-TGGT-GGAAAG
* * * * * *
1235951 AAAAGCCTTTCTTGCAAAACCAAAGCATCCATATCGTGTATCCTAATAGGAA--GACTATG-TTT
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCT-A-AGGAAGGGAATGTGTTTT
* * * *
1236013 ATGGTACCTAATCCT-ACAAAGAATAGG-GATTACTATGAGTATTCATG-TTGTCTTTTTTAAGA
64 A-GATTCCTAATCCTGA-AAAGAAT-GGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGA
* * **
1236075 GACAAACTTTTATTCTATCAAAAACAGTGGAAAG
125 GACAAACTTTGATTTTA-CAAAAATGGTGGAAAG
* * * * *** *
1236109 AAAAGCTTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCCATTAAAAGGAATGTGTTTTAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
** * * * * * *
1236174 -TTTTTCAATCCTGAAAAGAATGTG-GACTGTTACGAGAATCGGTGCTTGTCTTATTTAAG-GA-
66 ATTCCT-AATCCTGAAAAGAATG-GAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGAC
* *
1236235 ATTAACTTTGATTTTAAGGAAAAATAGG-GCAAAG
128 A--AACTTTGATTTT-A-CAAAAAT-GGTGGAAAG
** * * * ** * * * * * * *
1236269 AAAAGAATTCCATGCAAAAGAAAATCATCAATGTCATTTATCCAAATG-AGGAGAATGTGCTTAA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGG-GAATGTGTTTTA
* * * * * * * * * * *
1236333 AATGCCTAATCGT-AAAATGAAAGAAGATCATTACTAAAATCCATGTTTGTCTCATTT--GAGGC
65 GATTCCTAATCCTGAAAA-GAATGGAGATTATTA-TGAGATTCATGTTTGTCTTATTTAAGAGAC
* * * *
1236395 ATGAACTTAGACTTTACAAAAACTAGT-G-AGG
128 A--AACTTTGATTTTACAAAAA-TGGTGGAAAG
* * * *
1236426 AAAAAGACTTTT-TTGCGAGACCAAAGCATCAATATCATGTATCCTAATGAGAAGAGTATGT-TT
1 -AAAAG-CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA-G-GAAGGGAATGTGTT
* * * * * *
1236489 AT-GATACCAAAT-CTAGAAAAGAATGGGGATTACTATAAGTATTCATGTTTGTCTTATTTAAGA
62 TTAGATTCCTAATCCT-GAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGA
** *
1236552 GACAAACTTTGATTCCATCAAAAACGGTGGAAAG
125 GACAAACTTTGATTTTA-CAAAAATGGTGGAAAG
** *
1236586 AAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATGTATCCTAATGAAAGGGAATGTGTTTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA-GGAAGGGAATGTGTTTTA
* * * * * * * * * * **
1236651 GGTTCCCAATCCTAAAAAGAATGGAAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATT
65 GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGACA
** * *
1236716 AACTTTGATTTTGAGGAAAATAGG-GCAAGG
129 AACTTTGATTTT-ACAAAAAT-GGTGGAAAG
** * ** * ** * * * *
1236746 AAAAGAATTCCAAGCAAAAAAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGCTTGT
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGG-GAATGTG-TTTT
* * * *** * * * *
1236810 A-ATGCCTAATCAT-AATATGAAAAAAGATCATTACT-AGAATCCATGTTTGTCTCATTTGAG-G
64 AGATTCCTAATCCTGAA-AAGAATGGAGATTATTA-TGAG-ATTCATGTTTGTCTTATTTAAGAG
* * * *
1236871 CACGAACTTAGACTTTACAAAAATTGGTAGG-GA-
126 -ACAAACTTTGATTTTACAAAAA-TGGT-GGAAAG
* * * * * * *
1236904 AAAATCCTTTCTTGTGAA-A-CAAAGCATCAATATCGTGTATCCTAA--ATAGAAGACTATG-TT
1 AAAAGCTTTTCTTG-CAACACCAAAGCATCAATATCATGTATCCTAAGGA-AG-GGAATGTGTTT
* * * * * * *
1236964 TACAATACCTTATCCTTAAAAGACTAGG-GATTACTATGAGTATTCATGTTTGTCTTATGTAAGA
63 TA-GATTCCTAATCCTGAAAAGAAT-GGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGA
1237028 GACAAACTTTGATTCTTTA-AAAAATGGTGGAAA-
125 GACAAACTTTGA-T-TTTACAAAAATGGTGGAAAG
* * * *
1237061 AAAAGCTTTTCTTGCGACACCAAAGCGA-CAATTTGATGTATCCTAATGAAGGGAATGTGTTTTA
1 AAAAGCTTTTCTTGCAACACCAAAGC-ATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTA
* * * * * * * **
1237125 GGTTCCTAATCCTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATT
65 GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGACA
* *
1237190 AACATTGATTTTA-AGGAAAATAG-GGAAA-
129 AACTTTGATTTTACA--AAAATGGTGGAAAG
** * * * * ** * * *
1237218 AAAATATTTCCCTACAAAAGAAAATCTTCAATATCATTTATCCTAATGAGAA--GAATGTGTTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA-G-GAAGGGAATGTGTTT-
* * * * * * * * *
1237281 TAG-TGCGTAATCAC--AAATTGAATGAAGAATATTACT-AGAATCTATGTTTGCCTCATTTGAG
63 TAGATTCCTAATC-CTGAAA-AGAATGGAGATTATTA-TGAGATTC-ATGTTTGTCTTATTTAAG
* * * ** **
1237342 -GTACGAACTTAGACTTTACAAAAATCGACGGGGA-
124 AG-ACAAACTTTGATTTTACAAAAAT-GGTGGAAAG
* * * * * *
1237376 AAAATCCTTTCTTGCGAA-ACCAAATCATCAATATCGTGTATCCTAGTAGGAA--GACTTTG-TT
1 AAAAGCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTA--AGGAAGGGAATGTGTTT
* * * *
1237437 TATGGTACCTAATCCTGAAAAGAATAGG-GATTACTATGAGCATTCATG-TTGTCTTTTTTAAGA
63 TA-GATTCCTAATCCTGAAAAGAAT-GGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGA
** *
1237500 GACAAACTTTGATCCTATCAAAAACGGTGGAAAG
125 GACAAACTTTGATTTTA-CAAAAATGGTGGAAAG
* ** * ** *
1237534 AAATGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
* * * * * * *
1237599 -TTTCTCAATCCTAAAAAGAATGGGGACTATTATGAGAATCGATGCTTGTCTTTTTTAAG-GA-A
66 ATTCCT-AATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGACA
* *
1237661 TTAACTTTGATTTTAAGGAAAAATAGG-GCAAAG
129 --AACTTTGATTTT-A-CAAAAAT-GGTGGAAAG
** * * * ** * * * * * * * *
1237694 -AAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCAAATGAAGAGAATGTGCTTAAA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
* * * * * * * *
1237758 ATGCCTAATCAT-AAAATGAAAGAAGATCATTACT-AGAATCTATGTTTGTCTCATTTGAG-GTA
66 ATTCCTAATCCTGAAAA-GAATGGAGATTATTA-TGAGATTC-ATGTTTGTCTTATTTAAGAG-A
* * * * *
1237820 CGAACTTCGACTTTACAAAAACTAGT-G-AGG
127 CAAACTTTGATTTTACAAAAA-TGGTGGAAAG
* * *
1237850 AAAAAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAA--GACTATG-T
1 -AAAAGCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTAA-G-GAAGGGAATGTGTT
* * * * * *
1237911 TTATGATACGTAATCTTGAAAAGAATGGGGATTACTATAAGTATTCATGTTTGTCTTATTTAAGA
62 TTA-GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGA
** *
1237976 GACAAACTTTGATTCCATCAAAAACGGTGGAAAG
125 GACAAACTTTGATTTTA-CAAAAATGGTGGAAAG
* * *
1238010 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGGAATGTGTTTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA-GGAAGGGAATGTGTTTTA
* * * * * * * *
1238075 GGTTTCC-AATCCTAAAAAGAATGGAGACTATTATAAGAATCGATGCTTGTCTTATTTAAGGGAT
65 -GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGAC
* *
1238139 TAACTTTGATTTTA-AGGAAAATAG-GGAAAGG
128 AAACTTTGATTTTACA--AAAATGGTGGAAA-G
* ** * * * ** * * * * *
1238170 GAAAGAATTCCATGCAAAAAAAAAATCATCAATATCATTTATCCCAATG-AGGAGAATGTGCTTG
1 AAAAGCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTAAGGAAGG-GAATGTG-TTT
* * * * * * *
1238234 TA-ATGT-CTAATCAT-AATATGAAAGAAGATCATTACT-AGAGTCCATGTTTGTCTCATTT--G
63 TAGAT-TCCTAATCCTGAA-AAGAATGGAGATTATTA-TGAGA-TTCATGTTTGTCTTATTTAAG
* * * **
1238293 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGGA-
124 AGACA--AACTTTGATTTTACAAAAA-TGGTGGAAAG
* * * * * *
1238329 AAAATCTTTTATTGCGAA-A--AAAGCCATCAATATCGTGTATCCTAA--ATAGAAGACTATG-T
1 AAAAGCTTTTCTTGC-AACACCAAAG-CATCAATATCATGTATCCTAAGGA-AG-GGAATGTGTT
* * * * * * *
1238388 TTACAATACCTAATCCTTAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTGATGTAAGA
62 TTA-GATTCCTAATCCTGAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGTCTTATTTAAGA
*
1238453 GACAAACTTTGATTCTTTA-AGAAATGGTGGAAAG
125 GACAAACTTTGA-T-TTTACAAAAATGGTGGAAAG
* * * * *
1238487 AAAAGCTCTTCTTGCAACACCAAAGCGTCAATTTGATGTATCCTAATGAAGGGAATGTGTTTTAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
* * * * * * * * * * **
1238552 GTTCCTAATCTTGAAAAGAATGGCGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATTA
66 ATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGACAA
* * *
1238617 ACTTTGATTTTA-AGGAGAATAG-GGACAAA
130 ACTTTGATTTTACA--AAAATGGTGGA-AAG
* * * * ** * * *
1238646 AAAAGATTTCCATGCAAAAGAAAATCATCAGTATCATTTATCCTAATGAGAA--GAATGTGTTTA
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA-G-GAAGGGAATGTGTTT-
* * * ** * * * *
1238709 TAG-TGCGTAATCAC--AAATTGAATTAAGATTATTACT-AGAATCCATGTTTGCCTCATTTGAG
63 TAGATTCCTAATC-CTGAAA-AGAATGGAGATTATTA-TGAG-ATTCATGTTTGTCTTATTTAAG
* * ** *
1238770 -GCACAAACTTAGACTTTGGAAAAACTGGTGG--GG
124 AG-ACAAACTTTGATTTTACAAAAA-TGGTGGAAAG
* * * *
1238803 AAAAGCCCTTTCTTGCGAATCA--AAAGCATCAATATCGTGTATCCTAATAGGAA--GACTATG-
1 AAAAG-CTTTTCTTGC-AA-CACCAAAGCATCAATATCATGTATCCT-A-AGGAAGGGAATGTGT
* * * * ** *
1238863 TTTATGGTACCTAAT-CTAGAAAAGAATGGGGATTACTATTGTTATTCAAGTTTGTCTTATTTAA
61 TTTA-GATTCCTAATCCT-GAAAAGAATGGAGATTATTA-TGAGATTCATGTTTGTCTTATTTAA
*
1238927 GAGACAAACTTTGATTCTATA-AAAAACGGTGGAAAG
123 GAGACAAACTTTGATT-T-TACAAAAATGGTGGAAAG
* * **
1238963 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTAG
1 AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
* * * * * * * *
1239028 TTTCCAAATCTTGAAAAGAATGGGGATTGTTGTGAGAATCGATGCTTGTCTTATTTAAG-GA-AT
66 ATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGTCTTATTTAAGAGACA-
1239091 TAACTTTGATTTTA
129 -AACTTTGATTTTA
1239105 AGGAAAAATA
Statistics
Matches: 9900, Mismatches: 3028, Indels: 1948
0.67 0.20 0.13
Matches are distributed among these distances:
146 18 0.00
147 1 0.00
148 3 0.00
149 1 0.00
150 6 0.00
151 97 0.01
152 281 0.03
153 76 0.01
154 17 0.00
155 75 0.01
156 442 0.04
157 1227 0.12
158 2666 0.27
159 2882 0.29
160 1842 0.19
161 266 0.03
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (157 bp):
AAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAGGAAGGGAATGTGTTTTAG
ATTCCTAATCCTGAAAAGAATGGAGATTATTATGAGATTCATGTTTGTCTTATTTAAGAGACAAA
CTTTGATTTTACAAAAATGGTGGAAAG
Found at i:1227225 original size:477 final size:477
Alignment explanation
Indices: 1224802--1239319 Score: 19560
Period size: 477 Copynumber: 30.6 Consensus size: 477
1224792 TAGGCCAAAT
* * *
1224802 AATGGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGAAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
*
1224867 ATAGGGCAAAGAAATGAATTCCA--C-AAAGAAAATCATCAATATCATTTATCCAAATAATGGAG
66 ATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCC---TAAT---G
*
1224929 ACTGTTATGAGAATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTAATAGAATCCA
125 A--G----GAGAATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCA
* * * * * * *
1224994 TATTTGTCTCATTTGAGGCACGAACTTAGAGTTCATAAAAACTGGTGGGGAAAAAGCTTTTTTTG
184 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTG
* * *
1225059 CTAAATCAAAGCATCAATATCGTGTATCCTAA-TAGAAAGACTATGTTTATGGTACCTAATCCT-
249 CGAAACCAAAGCATCAATATCGTGTATCCTAATTAG-AAGACTATGTTTATGATACCTAATCCTA
* * * *
1225122 GAAATGAATGGGGAATACTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
313 GAAAAGAATGGGGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCA
* * *
1225187 TCAAAAACGGTGGAAAGAAATGCTTTTCTTGCAACACCAAAGCATCAATGTTATGTATCCTAATG
378 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * *
1225252 ATGGGAATGTGTTTTAGTTTCCCAATACTGAAAAG
443 AAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAAG
* * *
1225287 AATTGG-GACTGTTACGAGAATCGATACTTGTCTTACTTAAGGGATTAACTTTGAATTTAAGGAA
1 AA-TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAA
* * * *
1225351 AATAAGGCAAAGAGAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATGCTAATAAGGAG
65 AATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * * * ** * * **
1225416 AATGTGCTTATAATGCCTAATTATAAAATAAAAGAAGATCGTTAATAAAATCTGTATTTATCTTT
130 AATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCA
* * * * ** *
1225481 TTTGAGGCACGAACTTACACTTTACAACAATTGGTAGGGAAAAAGCGTTTCTTATGAAA-TAAAG
195 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAG
* * * * ** *
1225545 CATAAATATCATGTATTCTAATTAGAAGACTATGTTCACAATACGTAATCCT-GAAAAGAATGGG
260 CATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGGG
* * * *
1225609 GATTACTATAAGTATTCATGTTTGTCTTATTTGAGAGACAAACTTTGATT-CTTTATAAAACGGT
325 GATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCA-AAAACGGT
* *
1225673 GGAAAGAAAAGCTTTTTTTGCGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTG
389 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* *
1225738 -TTTAAGTTCCCAGTCCTGAAAAG
454 TTTTAGGTTCCCAATCCTGAAAAG
* * * * * * *
1225761 AATAGAGGCTATTGCGAGAATAGATGCTTGTCTTATTTTAGGGATTAATTTTGATTTTAAGGAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
* * * * * * * * *
1225826 AGAAGGCAAAGAAAAGATTTCCTTGCTAAGGAAAATCATCAATATCATTTATCCTAATAAGAAAA
66 ATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * * *
1225891 ATGTGTTTATAGTG-CTAATCACAAAATGAATGAAGATCATTACGAGAATCCATGTTTGTCTCAT
131 ATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* *
1225955 TTGGGGCACGAACTTAGACTTTACAAGAATTGGTGGGG-AAAAGCCTTTCTTGCGAAACCAAAGC
196 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGC
* * * * * * *
1226019 AACAATATCATGTATCCTAATGAGAAGACAACGTTTATGGTACCTAATCAT-GAAAAGAATGGGG
261 ATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGGGG
* * * ** *
1226083 ATTACTATAAGTTTTCATGCTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGG
326 ATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGG
* * * *
1226148 AAACAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGTATCCTAAGGAAGGGAATGTGTT
391 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
* * * *
1226213 TTAGTTTCCTAATCCTAAAAAA
456 TTAGGTTCCCAATCCTGAAAAG
* * * * *
1226235 AATGGAGACTGTTGCGAGAATTGATACTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
* * * * *
1226300 ATAAGGCAAAGAAAACAATTCCATGTAAAAGAAAATCATCAATATCATTTATCCAAATGAGAAGA
66 ATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * * *
1226365 ATGTGCTTATAGTGCCTAACCATAAAAGGAAAGAAGATCTTTACAAGAAT-CATTGTTTGTCTCA
131 ATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCA-TGTTTGTCTCA
* **
1226429 TTTGAGGCACGAACTTAGACTTTAC-AAAATTGGTAGGGAAAAAGCCTTTCTTATTG-AA-CAAA
195 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTT-GCGAAACCAAA
*** * * * *
1226491 GCATCAATATCGACAATCTTAATGAGAAGACTATGTTTATGGTACCTAATCCTA-AAAAG-ATTG
259 GCATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGG
* * * *
1226554 GGATTACTGTGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT--ATTTATAAAATG
324 GGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCA-TCA-AAAACG
* * * * *
1226617 GTGGAAAGAAAATCTTTACTTGCGACCCCAAAGCATCACTTGCCATGTATCCTAATGAAGGGAAT
387 GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA-ATGTCATGTATCCTAATGAAGGGAAT
1226682 GTGTTTTAGGTTCCCAATCCTGAAAAG
451 GTGTTTTAGGTTCCCAATCCTGAAAAG
*
1226709 AATGGAGACTGTTACGAGAATCGATGCTTATCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
* * * *
1226774 ATAGGGCAAGGAAAAGAATTCCATGCAAAGGAAAATCGTCAATATCATTTATCCTAGTGAGGAGA
66 ATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * *
1226839 ATGTGCTTATAGTGCCTGATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTTAT
131 ATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * *
1226904 TTGAGGCACGAACTTAGACTTTACAAAAACTAGTGGGGAAAAAGCCTTTCTTGCAAAACCAAAGC
196 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGC
* ** *
1226969 ATCAATATCATGTATCCTAAGGAGAAGACTATGTTTATGATACCTAAT-CTAGAAAAGAGTGGGG
261 ATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGGGG
*
1227033 ATTACTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGG
326 ATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGG
1227098 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGGAATGTGT
391 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGGAATGTGT
* * *
1227163 TTTAGGTTCACAATCTTAAAAAG
455 TTTAGGTTCCCAATCCTGAAAAG
* * * *
1227186 AATGGAGACTGTTACGAGAATTGATGCTTATCTTATTTAAGGGATTAACGTCGATTTTAAGGAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
* * *
1227251 ATAGGGCAAGGAAAAGAATTCTATGCAAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAG
66 ATAGGGCAAAGAAAAGAATTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * *
1227316 AATGTGCTTATAATACCTAATCATAATATGAAAGAAGATCATTACTAGAAACCATGTTTGTCTCA
130 AATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCA
* *
1227381 TTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGGAAAAATCCTTTCTTGCGAAA-CAAAG
195 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAG
* ** *
1227445 CATCAATATCGTGTATCCTAAATT-GAAGACTATGTGTACAATACCTAATCCT-TAAAAGAATGG
260 CATCAATATCGTGTATCCT-AATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGG
* * * * * * *
1227508 GGATTACTATGAGTATTAATATTTGTCTCATTTAAGAGACTAACTTTGATTCTACCAAAACCGGT
324 GGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGT
* * * * * * *
1227573 GGAAAGAAAAGCTTTTCTTGAGTCAACAAAGCGTCAATTTGATGTATCCTAATGAA-AGAATGTG
389 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* *
1227637 TTTTAGGTTCCTATTCCTGAAAA-
454 TTTTAGGTTCCCAATCCTGAAAAG
* * * *
1227660 AATGGGGACTGTTACGAGAATCGGTGCTTGTCATATTTAAGGAATTAACTTTGATTTTAAGGAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
*
1227725 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-G-G-
66 ATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* *
1227787 A---GCTTATAATGCCTAATCGTAAAATGAAAGAAGATCATTACTAAAATCCATGTTTGTCTCAT
131 ATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * * * * *
1227849 TTGAGGCATGAACTTAGACTTTACAAAAACTAGTGAGGAAAAAGACTTTTTTGCGAGACCAAAGC
196 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGC
* * * *
1227914 ATCAATATCATGTATCCTAATGAGAAGAGTATGTTTATGATACCAAAT-CTAGAAAAGAATGGGG
261 ATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGGGG
*
1227978 ATTACTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGG
326 ATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGG
* *
1228043 AAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATGTATCCTAATGAAAGGGAATGTGT
391 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGGAATGTGT
*
1228108 TTTAGGTTCCCAATCCTAAAAAG
455 TTTAGGTTCCCAATCCTGAAAAG
* *
1228131 AATGGAAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTGAGGAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
* * *
1228196 ATAGGGCAAGGAAAAGAATTCCAAGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGA
66 ATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * *
1228261 ATGTGCTTGTAATGCCTAATCATAATATGAAAAAAGATCATTACTAGAATCCATGTTTGTCTCAT
131 ATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * *
1228326 TTGAGGCACGAACTTAGACTTTACAAAAACTAGTGGGGAAAAATCCTTTCTTGCGAAACCAAAGC
196 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGC
** * *
1228391 ATCAATATCACGTATCCTAATGAGAAGAGTATGTTTATGATACCTAAT-CTAGAAAAGAATGGGG
261 ATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGGGG
* *
1228455 ATTACTATAAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGG
326 ATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGG
* *
1228520 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAAAGGGAATATGT
391 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGGAATGTGT
* *
1228585 TTTAGGTTTCCAATCCTAAAAAG
455 TTTAGGTTCCCAATCCTGAAAAG
*
1228608 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGAAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
* * *
1228673 ATAAGGCAAGGAAAAGAATTCCATGGAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGA
66 ATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * *
1228737 ATGTGCTTGTAATGCCTAATCATAATATGAAAGAAGATCATTAGTAGAATACATGTTTGTCTCAT
131 ATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * *
1228802 TGGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGGAAAAATCCTTTCTTGTGAAA-CAAAGC
196 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGC
* ** * *
1228866 ATCAATATCGTGTATCCTAAATAGAAGACTATGTTTACAATACCTAATCCT-TAAAGGAATGGGG
261 ATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGGGG
* ** * * *
1228930 ATTACTATGAGTATTCATGTTTGTCTTATGTAAGAGACAAACTTTGATTCTTTAAAAAATGGGGG
326 ATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGG
* * * *
1228995 AAAGAAAAGCTTTTCTTGCGACACCAAAGCGTCAATTTGATGTATCCTAGTGAAGGGAATGTGTT
391 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
* *
1229060 TTAGGTTCCTAATCTTGAAAAG
456 TTAGGTTCCCAATCCTGAAAAG
* * *
1229082 AATGGAGATTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATTAACATTGATTTTAAAGGAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTT-AAGGAA
* * * * * * * * *
1229147 AATAAGG-AAA-AGAAGATTTCCCTACAAAAGAAAATCATCAGTATCATTTATCCAAATTAGAAG
65 AATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * * * * * * *
1229210 AATGTGCTTATAATGCGTAATCACAAATTGAATGAAGATTATTACTAGAATCGATATTTGCCTTA
130 AATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCA
* ** * * *
1229275 TTTGGGGTGCGAACTTTGACTTTACAAAAACTGGTGGGGTAAAAGCCTTTCTTGCGAAACCAAAG
195 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAG
*
1229340 CATCAATATCGTGTATCCTAA-TAGGAAGACTATGTTTATGGTACCTAAT-CTAGAAAAGAATGG
260 CATCAATATCGTGTATCCTAATTA-GAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGG
* * *
1229403 GGATTACTGTTAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
324 GGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGT
* *
1229468 GGAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTG
389 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* *
1229533 TTTTAGTTTCCCAATCCTGGAAAG
454 TTTTAGGTTCCCAATCCTGAAAAG
1229557 AAT-GAGGACTGTTACGAGAATCGATGCTTGTCTTATTTAA-GGAGTTAACTTTGATTTTAAGGA
1 AATGGA-GACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGA-TTAACTTTGATTTTAAGG-
* * *
1229620 AAAATAGGGCCAAGAAAAGAATTCCATGCACAAGAAAATCATTAATATCATTTATCCTAATGAGG
63 AAAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
*
1229685 AGAATGTACTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCT
128 AGAATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCT
* * *
1229750 CATTTAAGGCACGAACTTAGACTTTGCAAAAATTGGTAGGGAAAATA-CCTTTCTTGC-ATAA--
193 CATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAA-AGCCTTTCTTGCGA-AACC
** * ** *
1229811 AAAGCATCAATATCGTGTATCCTAACGAGAAGACAATGTTTACAATATCTAATCCTA-AAAAGAA
256 AAAGCATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAA
* * * * * *
1229875 TAGGGATTATTATGAGTATTCATGATTGTCTTATTTAGGAGACAAACTTTGATT-CTTTATAAAA
321 TGGGGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCA-AAAA
* * * * * *
1229939 CGTTGGAAAGAAAAGCTTTTGTTACGACACCAAAGCATCAATGCCGTGTATTCTAATGAAGGGAA
385 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA
* *
1230004 TATGTTTTAGATTCCCAATCCTGAAAAG
450 TGTGTTTTAGGTTCCCAATCCTGAAAAG
*
1230032 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
* *
1230097 ATAGTGCAAAGAAAAGAATTCCATGCAAAA-AAAATTATCAATATCATTTATCCTAATGA-G-G-
66 ATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * *
1230158 A---GCTTGTAGTGCCTAATCATAAAATGAAAGAAGATCATTACAAGAATCCGTGTTTGTCTCAT
131 ATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * *
1230220 TTGAGGCACAAACTTATACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTT--G----CAAAGC
196 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGC
* * * *
1230279 ATCCATATCGTGTATCCTAA-TAGGAAGACTATGTTTATGGTACCTAATCCTA-CAAAGAATAGG
261 ATCAATATCGTGTATCCTAATTA-GAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGGG
* * * *
1230342 GATTACTATGAGTATTCATG-TTGTCTTTTTTAAGAGACAAACTTTTATTCTATCAAAAACAGTG
325 GATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTG
* * * * *
1230406 GAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCCATTAAAAGGAATGTGT
390 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT
* **
1230471 TTTAGTTTTTCAATCCTGAAAAG
455 TTTAGGTTCCCAATCCTGAAAAG
* *
1230494 AATGTG-GACTGTTACGAGAATCGGTGCTTGTCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
1 AATG-GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGG-A
* *
1230558 AAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATGTCATTTATCCAAATGAGGA
64 AAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * *
1230623 GAATGTGCTTAAAATGCCTAATCGTAAAATGAAAGAAGATCATTACTAAAATCCATGTTTGTCTC
129 GAATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTC
* * * * * * *
1230688 ATTTGAGGCATGAACTTAGACTTTACAAAAACTAGTGAGGAAAAAGACTTTTTTGCGAGACCAAA
194 ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAA
* * * *
1230753 GCATCAATATCATGTATCCTAATGAGAAGAGTATGTTTATGATACCAAAT-CTAGAAAAGAATGG
259 GCATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGG
*
1230817 GGATTACTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGT
324 GGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGT
* *
1230882 GGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATGTATCCTAATGAAAGGGAATGT
389 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGGAATGT
*
1230947 GTTTTAGGTTCCCAATCCTAAAAAG
453 GTTTTAGGTTCCCAATCCTGAAAAG
* *
1230972 AATGGAAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTGAGGAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
* * *
1231037 ATAGGGCAAGGAAAAGAATTCCAAGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGA
66 ATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * *
1231102 ATGTGCTTGTAATGCCTAATCATAATATGAAAAAAGATCATTACTAGAATCCATGTTTGTCTCAT
131 ATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * *
1231167 TTGAGGCACGAACTTAGACTTTACAAAAACTAGTGGGGAAAAATCCTTTCTTGCGAAACCAAAGC
196 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGC
** * *
1231232 ATCAATATCACGTATCCTAATGAGAAGAGTATGTTTATGATACCTAAT-CTAGAAAAGAATGGGG
261 ATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGGGG
* *
1231296 ATTACTATAAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGG
326 ATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGG
* *
1231361 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAAAGGGAATATGT
391 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGGAATGTGT
* *
1231426 TTTAGGTTTCCAATCCTAAAAAG
455 TTTAGGTTCCCAATCCTGAAAAG
1231449 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAA-GAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
* * * *
1231513 ACTAAGGCAAGGAAAAGAATTCCATGGAAAAAAAAAATCATCAATATCATTTATCCTAATGAGGA
66 A-TAGGGCAAAGAAAAGAATTCCAT-GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * * *
1231578 GAATGTGCTTGTAATGCCTAATCATAATATGAAAGAAGATCATTAGTAGAATACATGTTTGTCTC
129 GAATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTC
* * * *
1231643 ATTGGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGGAAAAATCCTTTCTTGTGAAA-CAAA
194 ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAA
* ** * *
1231707 GCATCAATATCGTGTATCCTAAATAGAAGACTATGTTTACAATACCTAATCCT-TAAAGGAATGG
259 GCATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGG
* ** * * *
1231771 GGATTACTATGAGTATTCATGTTTGTCTTATGTAAGAGACAAACTTTGATTCTTTAAAAAATGGG
324 GGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGT
* * * *
1231836 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCGTCAATTTGATGTATCCTAGTGAAGGGAATGTG
389 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* *
1231901 TTTTAGGTTCCTAATCTTGAAAAG
454 TTTTAGGTTCCCAATCCTGAAAAG
* * *
1231925 AATGGAGATTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATTAACATTGATTTTAAAGGAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTT-AAGGAA
* * * * * * * * *
1231990 AATAAGG-AAA-AGAAGATTTCCCTACAAAAGAAAATCATCAGTATCATTTATCCAAATTAGAAG
65 AATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * * * * * * *
1232053 AATGTGCTTATAATGCGTAATCACAAATTGAATGAAGATTATTACTAGAATCGATATTTGCCTTA
130 AATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCA
* ** * * *
1232118 TTTGGGGTGCGAACTTTGACTTTACAAAAACTGGTGGGGTAAAAGCCTTTCTTGCGAAACCAAAG
195 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAG
*
1232183 CATCAATATCGTGTATCCTAA-TAGGAAGACTATGTTTATGGTACCTAAT-CTAGAAAAGAATGG
260 CATCAATATCGTGTATCCTAATTA-GAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGG
* * *
1232246 GGATTACTGTTAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
324 GGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGT
* *
1232311 GGAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTG
389 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* *
1232376 TTTTAGTTTCCCAATCCTGGAAAG
454 TTTTAGGTTCCCAATCCTGAAAAG
1232400 AAT-GAGGACTGTTACGAGAATCGATGCTTGTCTTATTTAA-GGAGTTAACTTTGATTTTAAGGA
1 AATGGA-GACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGA-TTAACTTTGATTTTAAGG-
* * *
1232463 AAAATAGGGCCAAGAAAAGAATTCCATGCACAAGAAAATCATTAATATCATTTATCCTAATGAGG
63 AAAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
*
1232528 AGAATGTACTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCT
128 AGAATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCT
* * *
1232593 CATTTAAGGCACGAACTTAGACTTTGCAAAAATTGGTAGGGAAAATA-CCTTTCTTGC-ATAA--
193 CATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAA-AGCCTTTCTTGCGA-AACC
** * ** *
1232654 AAAGCATCAATATCGTGTATCCTAACGAGAAGACAATGTTTACAATATCTAATCCTA-AAAAGAA
256 AAAGCATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAA
* * * * * *
1232718 TAGGGATTATTATGAGTATTCATGATTGTCTTATTTAGGAGACAAACTTTGATT-CTTTATAAAA
321 TGGGGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCA-AAAA
* * * * * *
1232782 CGTTGGAAAGAAAAGCTTTTGTTACGACACCAAAGCATCAATGCCGTGTATTCTAATGAAGGGAA
385 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA
* *
1232847 TATGTTTTAGATTCCCAATCCTGAAAAG
450 TGTGTTTTAGGTTCCCAATCCTGAAAAG
*
1232875 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
* *
1232940 ATAGTGCAAAGAAAAGAATTCCATGCAAAA-AAAATTATCAATATCATTTATCCTAATGA-G-G-
66 ATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * *
1233001 A---GCTTGTAGTGCCTAATCATAAAATGAAAGAAGATCATTACAAGAATCCGTGTTTGTCTCAT
131 ATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * *
1233063 TTGAGGCACAAACTTATACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTTGCAAAACCAAAGC
196 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGC
* * * *
1233128 ATCCATATCGTGTATCCTAA-TAGGAAGACTATGTTTATGGTACCTAATCCTA-CAAAGAATAGG
261 ATCAATATCGTGTATCCTAATTA-GAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGGG
* * * *
1233191 GATTACTATGAGTATTCATG-TTGTCTTTTTTAAGAGACAAACTTTTATTCTATCAAAAACAGTG
325 GATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTG
* * * * *
1233255 GAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCCATTAAAAGGAATGTGT
390 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT
* **
1233320 TTTAGTTTTTCAATCCTGAAAAG
455 TTTAGGTTCCCAATCCTGAAAAG
* *
1233343 AATGTG-GACTGTTACGAGAATCGGTGCTTGTCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
1 AATG-GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGG-A
* *
1233407 AAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATGTCATTTATCCAAATGAGGA
64 AAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * *
1233472 GAATGTGCTTAAAATGCCTAATCGTAAAATGAAAGAAGATCATTACTAAAATCCATGTTTGTCTC
129 GAATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTC
* * * * * * *
1233537 ATTTGAGGCATGAACTTAGACTTTACAAAAACTAGTGAGGAAAAAGACTTTTTTGCGAGACCAAA
194 ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAA
* * * *
1233602 GCATCAATATCATGTATCCTAATGAGAAGAGTATGTTTATGATACCAAAT-CTAGAAAAGAATGG
259 GCATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGG
*
1233666 GGATTACTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGT
324 GGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGT
* *
1233731 GGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATGTATCCTAATGAAAGGGAATGT
389 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGGAATGT
*
1233796 GTTTTAGGTTCCCAATCCTAAAAAG
453 GTTTTAGGTTCCCAATCCTGAAAAG
* *
1233821 AATGGAAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTGAGGAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
* * *
1233886 ATAGGGCAAGGAAAAGAATTCCAAGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGA
66 ATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * *
1233951 ATGTGCTTGTAATGCCTAATCATAATATGAAAAAAGATCATTACTAGAATCCATGTTTGTCTCAT
131 ATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * *
1234016 TTGAGGCACGAACTTAGACTTTACAAAAACTAGTGGGGAAAAATCCTTTCTTGCGAAACCAAAGC
196 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGC
** * *
1234081 ATCAATATCACGTATCCTAATGAGAAGAGTATGTTTATGATACCTAAT-CTAGAAAAGAATGGGG
261 ATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGGGG
* *
1234145 ATTACTATAAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGG
326 ATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGG
* *
1234210 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAAAGGGAATATGT
391 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGGAATGTGT
* *
1234275 TTTAGGTTTCCAATCCTAAAAAG
455 TTTAGGTTCCCAATCCTGAAAAG
1234298 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAA-GAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
* * * *
1234362 ACTAAGGCAAGGAAAAGAATTCCATGGAAAAAAAAAATCATCAATATCATTTATCCTAATGAGGA
66 A-TAGGGCAAAGAAAAGAATTCCAT-GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * * *
1234427 GAATGTGCTTGTAATGCCTAATCATAATATGAAAGAAGATCATTAGTAGAATACATGTTTGTCTC
129 GAATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTC
* * * *
1234492 ATTGGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGGAAAAATCCTTTCTTGTGAAA-CAAA
194 ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAA
* ** * *
1234556 GCATCAATATCGTGTATCCTAAATAGAAGACTATGTTTACAATACCTAATCCT-TAAAGGAATGG
259 GCATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGG
* ** * * *
1234620 GGATTACTATGAGTATTCATGTTTGTCTTATGTAAGAGACAAACTTTGATTCTTTAAAAAATGGG
324 GGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGT
* * * *
1234685 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCGTCAATTTGATGTATCCTAGTGAAGGGAATGTG
389 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* *
1234750 TTTTAGGTTCCTAATCTTGAAAAG
454 TTTTAGGTTCCCAATCCTGAAAAG
* * *
1234774 AATGGAGATTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATTAACATTGATTTTAAAGGAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTT-AAGGAA
* * * * * * * * *
1234839 AATAAGG-AAA-AGAAGATTTCCCTACAAAAGAAAATCATCAGTATCATTTATCCAAATTAGAAG
65 AATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * * * * * * *
1234902 AATGTGCTTATAATGCGTAATCACAAATTGAATGAAGATTATTACTAGAATCGATATTTGCCTTA
130 AATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCA
* ** * * *
1234967 TTTGGGGTGCGAACTTTGACTTTACAAAAACTGGTGGGGTAAAAGCCTTTCTTGCGAAACCAAAG
195 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAG
*
1235032 CATCAATATCGTGTATCCTAA-TAGGAAGACTATGTTTATGGTACCTAAT-CTAGAAAAGAATGG
260 CATCAATATCGTGTATCCTAATTA-GAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGG
* * *
1235095 GGATTACTGTTAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
324 GGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGT
* *
1235160 GGAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTG
389 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* *
1235225 TTTTAGTTTCCCAATCCTGGAAAG
454 TTTTAGGTTCCCAATCCTGAAAAG
1235249 AAT-GAGGACTGTTACGAGAATCGATGCTTGTCTTATTTAA-GGAGTTAACTTTGATTTTAAGGA
1 AATGGA-GACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGA-TTAACTTTGATTTTAAGG-
* * *
1235312 AAAATAGGGCCAAGAAAAGAATTCCATGCACAAGAAAATCATTAATATCATTTATCCTAATGAGG
63 AAAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
*
1235377 AGAATGTACTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCT
128 AGAATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCT
* * *
1235442 CATTTAAGGCACGAACTTAGACTTTGCAAAAATTGGTAGGGAAAATA-CCTTTCTTGC-ATAA--
193 CATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAA-AGCCTTTCTTGCGA-AACC
** * ** *
1235503 AAAGCATCAATATCGTGTATCCTAACGAGAAGACAATGTTTACAATATCTAATCCTA-AAAAGAA
256 AAAGCATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAA
* * * * * *
1235567 TAGGGATTATTATGAGTATTCATGATTGTCTTATTTAGGAGACAAACTTTGATT-CTTTATAAAA
321 TGGGGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCA-AAAA
* * * * * *
1235631 CGTTGGAAAGAAAAGCTTTTGTTACGACACCAAAGCATCAATGCCGTGTATTCTAATGAAGGGAA
385 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA
* *
1235696 TATGTTTTAGATTCCCAATCCTGAAAAG
450 TGTGTTTTAGGTTCCCAATCCTGAAAAG
*
1235724 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
* *
1235789 ATAGTGCAAAGAAAAGAATTCCATGCAAAA-AAAATTATCAATATCATTTATCCTAATGA-G-G-
66 ATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * *
1235850 A---GCTTGTAGTGCCTAATCATAAAATGAAAGAAGATCATTACAAGAATCCGTGTTTGTCTCAT
131 ATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * *
1235912 TTGAGGCACAAACTTATACTTTACAAAAATTGGTAGGGAAAAAGCCTTTCTTGCAAAACCAAAGC
196 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGC
* * * *
1235977 ATCCATATCGTGTATCCTAA-TAGGAAGACTATGTTTATGGTACCTAATCCTA-CAAAGAATAGG
261 ATCAATATCGTGTATCCTAATTA-GAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGGG
* * * *
1236040 GATTACTATGAGTATTCATG-TTGTCTTTTTTAAGAGACAAACTTTTATTCTATCAAAAACAGTG
325 GATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTG
* * * * *
1236104 GAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTCATGTATCCCATTAAAAGGAATGTGT
390 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT
* **
1236169 TTTAGTTTTTCAATCCTGAAAAG
455 TTTAGGTTCCCAATCCTGAAAAG
* *
1236192 AATGTG-GACTGTTACGAGAATCGGTGCTTGTCTTATTTAAGGAATTAACTTTGATTTTAAGGAA
1 AATG-GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGG-A
* *
1236256 AAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATGTCATTTATCCAAATGAGGA
64 AAATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * *
1236321 GAATGTGCTTAAAATGCCTAATCGTAAAATGAAAGAAGATCATTACTAAAATCCATGTTTGTCTC
129 GAATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTC
* * * * * * *
1236386 ATTTGAGGCATGAACTTAGACTTTACAAAAACTAGTGAGGAAAAAGACTTTTTTGCGAGACCAAA
194 ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAA
* * * *
1236451 GCATCAATATCATGTATCCTAATGAGAAGAGTATGTTTATGATACCAAAT-CTAGAAAAGAATGG
259 GCATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGG
*
1236515 GGATTACTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGT
324 GGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGT
* *
1236580 GGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATGTATCCTAATGAAAGGGAATGT
389 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGGAATGT
*
1236645 GTTTTAGGTTCCCAATCCTAAAAAG
453 GTTTTAGGTTCCCAATCCTGAAAAG
* *
1236670 AATGGAAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTGAGGAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
* * *
1236735 ATAGGGCAAGGAAAAGAATTCCAAGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGA
66 ATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * *
1236800 ATGTGCTTGTAATGCCTAATCATAATATGAAAAAAGATCATTACTAGAATCCATGTTTGTCTCAT
131 ATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * *
1236865 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGGAAAAATCCTTTCTTGTGAAA-CAAAGC
196 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGC
* ** * * * *
1236929 ATCAATATCGTGTATCCTAAATAGAAGACTATGTTTACAATACCTTATCCT-TAAAAGACTAGGG
261 ATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGGGG
* ** * *
1236993 ATTACTATGAGTATTCATGTTTGTCTTATGTAAGAGACAAACTTTGATTCTTTAAAAAATGGTGG
326 ATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGG
* *
1237058 AAA-AAAAGCTTTTCTTGCGACACCAAAGCGA-CAATTTGATGTATCCTAATGAAGGGAATGTGT
391 AAAGAAAAGCTTTTCTTGCGACACCAAAGC-ATCAATGTCATGTATCCTAATGAAGGGAATGTGT
*
1237121 TTTAGGTTCCTAATCCTGAAAAG
455 TTTAGGTTCCCAATCCTGAAAAG
* * *
1237144 AATGGAGATTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATTAACATTGATTTTAAGGAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
* * * * * *
1237209 ATAGGG-AAA-AAAATATTTCCCTACAAAAGAAAATCTTCAATATCATTTATCCTAATGAGAAGA
66 ATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * * * * * *
1237272 ATGTGTTTATAGTGCGTAATCACAAATTGAATGAAGAAT-ATTACTAGAATCTATGTTTGCCTCA
131 ATGTGCTTATAATGCCTAATCATAAAATGAAAGAAG-ATCATTACTAGAATCCATGTTTGTCTCA
* * ** * *
1237336 TTTGAGGTACGAACTTAGACTTTACAAAAATCGACGGGGAAAAATCCTTTCTTGCGAAACCAAAT
195 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAG
* * * *
1237401 CATCAATATCGTGTATCCT-AGTAGGAAGACTTTGTTTATGGTACCTAATCCT-GAAAAGAATAG
260 CATCAATATCGTGTATCCTAATTA-GAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGG
* *
1237464 GGATTACTATGAGCATTCATG-TTGTCTTTTTTAAGAGACAAACTTTGA-TCCTATCAAAAACGG
324 GGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCC-ATCAAAAACGG
* * * *
1237527 TGGAAAGAAATGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGT
388 TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT
* * *
1237592 GTTTTAGTTTCTCAATCCTAAAAAG
453 GTTTTAGGTTCCCAATCCTGAAAAG
* * * * *
1237617 AATGGGGACTATTATGAGAATCGATGCTTGTCTTTTTTAAGGAATTAACTTTGATTTTAAGGAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGG-AA
* *
1237682 AATAGGGCAAAG-AAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCAAATGAAGAG
65 AATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* *
1237746 AATGTGCTTAAAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCTATGTTTGTCTCA
130 AATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCA
* * * * *
1237811 TTTGAGGTACGAACTTCGACTTTACAAAAACTAGTGAGGAAAAAGCCTTTCTTGCGAAACCAAAG
195 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAG
* * * *
1237876 CATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGATACGTAAT-CTTGAAAAGAATGGG
260 CATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGGG
*
1237940 GATTACTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTG
325 GATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTG
1238005 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGGAATGTG
390 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGGAATGTG
* *
1238070 TTTTAGGTTTCCAATCCTAAAAAG
454 TTTTAGGTTCCCAATCCTGAAAAG
* **
1238094 AATGGAGACTATTATAAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
* * *
1238159 ATAGGG-AAAGGGAAAGAATTCCATGCAAAAAAAAAATCATCAATATCATTTATCCCAATGAGGA
66 ATAGGGCAAA-GAAAAGAATTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * * *
1238223 GAATGTGCTTGTAATGTCTAATCATAATATGAAAGAAGATCATTACTAGAGTCCATGTTTGTCTC
129 GAATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTC
* * * *
1238288 ATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGGAAAAATCTTTTATTGCGAAA--AAA
194 ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAA
* ** *
1238351 GCCATCAATATCGTGTATCCTAAATAGAAGACTATGTTTACAATACCTAATCCT-TAAAAGAATG
259 G-CATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATG
* * * * *
1238415 GGGATTACTATGAGTATTCATGTTTGTCTGATGTAAGAGACAAACTTTGATT-CTTTAAGAAATG
323 GGGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAA-AAACG
* * * * *
1238479 GTGGAAAGAAAAGCTCTTCTTGCAACACCAAAGCGTCAATTTGATGTATCCTAATGAAGGGAATG
387 GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
* *
1238544 TGTTTTAGGTTCCTAATCTTGAAAAG
452 TGTTTTAGGTTCCCAATCCTGAAAAG
* * *
1238570 AATGGCGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATTAACTTTGATTTTAAGGAGA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
* * *
1238635 ATAGGGACAAA-AAAAGATTTCCATGCAAAAGAAAATCATCAGTATCATTTATCCTAATGAGAAG
66 ATAGGG-CAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * * * ** * *
1238699 AATGTGTTTATAGTGCGTAATCACAAATTGAATTAAGATTATTACTAGAATCCATGTTTGCCTCA
130 AATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCA
* ** * * *
1238764 TTTGAGGCACAAACTTAGACTTTGGAAAAACTGGTGGGG-AAAAGCCCTTTCTTGCGAATCAAAA
195 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAG-CCTTTCTTGCGAAACCAAA
*
1238828 GCATCAATATCGTGTATCCTAA-TAGGAAGACTATGTTTATGGTACCTAAT-CTAGAAAAGAATG
259 GCATCAATATCGTGTATCCTAATTA-GAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATG
* * * *
1238891 GGGATTACTATTG-TTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACG
323 GGGATTACTA-TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACG
*
1238955 GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATG
387 GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
* * *
1239020 TGTTTTAGTTTCCAAATCTTGAAAAG
452 TGTTTTAGGTTCCCAATCCTGAAAAG
* * ** *
1239046 AATGGGGATTGTTGTGAGAATCGATGCTTGTCTTATTTAAGGAATTAACTTTGATTTTAAGGAAA
1 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGG-AA
* * *
1239111 AATAGAGCTAAGAAAAGAATTCCATGCAAAAGAAAATCAACAATATCATTTATCCTAATGAGGAG
65 AATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * *
1239176 AATGTTCTTATAATGCCTAATCATAATATGAAAGAAGATCAATACTAGAATCCA-GTTTGTCTCA
130 AATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCA
* * *
1239240 TTTGAGGCACGAACTTAGACTTTACTAAAATTGGTAGGTAAAAAGCCTTTCTTGCGAAA-CAAAG
195 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAG
1239304 CATCAATATCGTGTAT
260 CATCAATATCGTGTAT
1239320 TGAATGCTCA
Statistics
Matches: 12372, Mismatches: 1461, Indels: 410
0.87 0.10 0.03
Matches are distributed among these distances:
462 165 0.01
463 112 0.01
464 26 0.00
465 1 0.00
466 4 0.00
467 425 0.03
468 490 0.04
469 226 0.02
470 180 0.01
471 124 0.01
472 218 0.02
473 663 0.05
474 1408 0.11
475 2409 0.19
476 1611 0.13
477 3311 0.27
478 887 0.07
479 1 0.00
480 1 0.00
482 1 0.00
485 79 0.01
486 3 0.00
487 1 0.00
488 26 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (477 bp):
AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAA
ATAGGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
ATGTGCTTATAATGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCAT
TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACCAAAGC
ATCAATATCGTGTATCCTAATTAGAAGACTATGTTTATGATACCTAATCCTAGAAAAGAATGGGG
ATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGG
AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
TTAGGTTCCCAATCCTGAAAAG
Found at i:1231079 original size:160 final size:160
Alignment explanation
Indices: 1226660--1238219 Score: 1519
Period size: 158 Copynumber: 73.1 Consensus size: 160
1226650 CATCACTTGC
* * * *
1226660 CATGTATCCTAATG-AAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAAGAATGGAGACTGTTAC
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
*
1226724 GAGAATCGATGCTTATCTTATTTAAGGGATTAACTTTGATTTTAAGGAAAA-TAGGGCAAGGAAA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAA-GAAAACTAGGGCAAGGAAA
** * *
1226788 AGAATTCCATGCAAAGGAAAATCGTCAATAT
130 AGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * ** * * *
1226819 CATTTATCCTAGTG--AGGAGAATGTGCTTATAG-TGCCTGATCATAAAATGAA-AGAAGA-TCA
1 CATGTATCCTAATGAAAGG-GAATGTG-TTTTAGATTCCCAATCCTAAAAAGAATGGAA-ACT-A
* * * * * ** * *
1226879 TTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACA-AAAACTAGTGG---
62 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTA-AGAAAACTAG-GGCAA
** * * **
1226940 GGAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATAT
125 GG-AAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * ** * *
1226977 CATGTATCCTAAGGAGAA--GACTATG-TTTATGATACCTAAT-CTAGAAAAGAGTGGGGATTAC
1 CATGTATCCTAATGA-AAGGGAATGTGTTTTA-GATTCCCAATCCTA-AAAAGAATGGAAACTAT
** * * * ** * * *
1227038 TATAAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCA-AAAAC--GGTGGA
63 TACGAG-AATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATT--TTAAGAAAACTAGG-GCA
* ** * * * * ** *
1227099 AAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
124 AGGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * *
1227136 CATGTATCCTAATGAAAGGGAATGTGTTTTAGGTTCACAATCTTAAAAAGAATGGAGACTGTTAC
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
* * * *
1227201 GAGAATTGATGCTTATCTTATTTAAGGGATTAACGTCGATTTTAAGGAAAA-TAGGGCAAGGAAA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAA-GAAAACTAGGGCAAGGAAA
* *
1227265 AGAATTCTATGCAAAAAAAAAATCATCAATAT
130 AGAATTCCATGC-AAAAAAAAAGCATCAATAT
* * * * * * * *
1227297 CATTTATCCTAATG--AGGAGAATGTGCTTATA-ATACCTAATCATAATATGAA-AGAAGA-TCA
1 CATGTATCCTAATGAAAGG-GAATGTG-TTTTAGATTCCCAATCCTAAAAAGAATGGAA-ACT-A
* * * * * * * ** * * * *
1227357 TTACTAGAAACCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACA-AAAA-TTGGTG--G
62 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTA-AGAAAACTAGG-GCAA
* * * * *
1227418 GGAAAA-ATCCTTTCTTGC-GAAACAAAGCATCAATAT
125 GGAAAAGA--ATTCCATGCAAAAAAAAAGCATCAATAT
* *** ** * * * ** * *
1227454 CGTGTATCCTAAATTG-AAGACTATGTG-TACA-ATACCTAATCCTTAAAAGAATGGGGATTACT
1 CATGTATCCT-AA-TGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATT
* * ** ** * * * * ** * * *
1227516 ATGAGTATTAATATTTGTCTCATTTAAGAGACTAACTTTGATTCTACCAAAAC-CGGTGGAAAGA
64 ACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGAAAACTAGG-GCAAGGA
** * * ** * * *
1227580 AAAGCTTTTCTTG-AGTCAACAAAGCGTCAATTT
128 AAAGAATTCCATGCA-AAAAAAAAGCATCAATAT
* * * * * ** *
1227613 GATGTATCCTAATGAAA--GAATGTGTTTTAGGTTCCTATTCCTGAAAA-AATGGGGACTGTTAC
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
* * * *
1227675 GAGAATCGGTGCTTGTCATATTTAAGGAATTAACTTTGATTTTAAGGAAAA-TAGGGCAAAGAAA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAA-GAAAACTAGGGCAAGGAAA
* * *
1227739 AGATTTCCATGCAAAAGAAAATCATCAATAT
130 AGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * *
1227770 CATTTATCCTAATG--A-GG-A-G-CTTATA-ATGCCTAATCGTAAAATGAA-AGAAGA-TCATT
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAA-ACT-ATT
* * * * * * * * * * *
1227826 ACTAAAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACA-AAAACTAGTG--AGGA
64 ACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTA-AGAAAACTAGGGCAAGG-
* *** * * **
1227888 AAAAGACTTTTTTGCGAGACCAAAGCATCAATAT
127 AAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * ** * *
1227922 CATGTATCCTAATGAGAAGAGTATGT-TTAT-GATACCAAAT-CTAGAAAAGAATGGGGATTACT
1 CATGTATCCTAATGA-AAGGGAATGTGTTTTAGATTCCCAATCCTA-AAAAGAATGGAAACTATT
** * * * ** * * *
1227984 ATAAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCA-AAAAC--GGTGGAA
64 ACGAG-AATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATT--TTAAGAAAACTAGG-GCAA
* ** * * ** * **
1228045 AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATAT
125 GGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* *
1228081 CATGTATCCTAATGAAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAAGAATGGAAACTGTTAC
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
*
1228146 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTGAGGAAAA-TAGGGCAAGGAAA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTT-AAGAAAACTAGGGCAAGGAAA
* *
1228210 AGAATTCCAAGCAAAAAAAAATCATCAATAT
130 AGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * *
1228241 CATTTATCCTAATG--AGGAGAATGTGCTTGTA-ATGCCTAATCATAATATGAA--AAAAGATCA
1 CATGTATCCTAATGAAAGG-GAATGTG-TTTTAGATTCCCAATCCTAAAAAGAATGGAAA-CT-A
* * * * * * ** * *
1228301 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA-AAAACTAGTGG---
62 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTA-AGAAAACTAG-GGCAA
* * * * **
1228362 GGAAAA-ATCCTTTCTTGCGAAACCAAAGCATCAATAT
125 GGAAAAGA--ATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * ** * *
1228399 CACGTATCCTAATGAGAAGAGTATGT-TTAT-GATACCTAAT-CTAGAAAAGAATGGGGATTACT
1 CATGTATCCTAATGA-AAGGGAATGTGTTTTAGATTCCCAATCCTA-AAAAGAATGGAAACTATT
** * * * * * * *
1228461 ATAAGTATTC-ATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCA-AAAAC--GGTGGAA
64 ACGAG-AATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATT--TTAAGAAAACTAGG-GCAA
* ** * * * * **
1228522 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATAT
125 GGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * *
1228558 CATGTATCCTAATGAAAGGGAATATGTTTTAGGTTTCCAATCCTAAAAAGAATGGAGACTGTTAC
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
* *
1228623 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGAAAAATAAGGCAAGGAAAA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGAAAACTAGGGCAAGGAAAA
* *
1228688 GAATTCCATG-GAAAAAAAATCATCAATAT
131 GAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * *
1228717 CATTTATCCTAATG--AGGAGAATGTGCTTGTA-ATGCCTAATCATAATATGAA-AGAAGA-TCA
1 CATGTATCCTAATGAAAGG-GAATGTG-TTTTAGATTCCCAATCCTAAAAAGAATGGAA-ACT-A
* * ** * ** * * * *
1228777 TTA-GTAGAATAC-ATGTTTGTCTCATTGGAGGCACGAACTTAGACTTTACA-AAAA-T-TGGTA
62 TTACG-AGAAT-CGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTA-AGAAAACTAGGGCA
* * * * ** *
1228837 GGGAAAA-ATCCTTTCTTG-TGAAACAAAGCATCAATAT
124 AGGAAAAGA--ATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * ** * *
1228874 CGTGTATCCTAAAT-AGAA--GACTATG-TTTACAATACCTAATCCTTAAAGGAATGGGGATTAC
1 CATGTATCCT-AATGA-AAGGGAATGTGTTTTA-GATTCCCAATCCTAAAAAGAATGGAAACTAT
* * * * * ** * *
1228935 TATGAGTATTC-ATGTTTGTCTTATGTAAGAGACAAACTTTGATTCTTTAA-AAAA-TGGGGGAA
63 TACGAG-AATCGATGCTTGTCTTATTTAAGGGATTAACTTTGA-T-TTTAAGAAAACTAGGGCAA
* ** * * * * ** * *
1228997 AGAAAAGCTTTTCTTGCGACACCAAAGCGTCAATTT
125 GGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * *
1229033 GATGTATCCTAGTG-AAGGGAATGTGTTTTAGGTTCCTAATCTTGAAAAGAATGGAGATTGTTAC
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
* * *
1229097 GAGAATCGATGCTTGTCATATTTAAGGGATTAACATTGATTTTAAAGGAAAA-TAAGG-AA--AA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTT-AA-GAAAACTAGGGCAAGGAA
* * * * * *
1229158 GAAGATTTCCCTACAAAAGAAAATCATCAGTAT
129 -AAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * ** ** *
1229191 CATTTATCCAAATTAGAA--GAATGTGCTTATA-ATGCGTAATCAC-AAATTGAAT-GAAGATTA
1 CATGTATCCTAATGA-AAGGGAATGTG-TTTTAGATTCCCAATC-CTAAAAAGAATGGAA-ACTA
* ** * * * *
1229251 TTACTAGAATCGATATTTGCCTTATTT--GGGGTGCGAACTTTGACTTTACA-AAAACT-GGTG-
62 TTACGAGAATCGATGCTTGTCTTATTTAAGGGAT--TAACTTTGATTTTA-AGAAAACTAGG-GC
* ** * * * **
1229311 -GGGTAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
123 AAGG-AAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * *
1229349 CGTGTATCCTAATAGGAA--GACTATG-TTTATGGTACCTAAT-CTAGAAAAGAATGGGGATTAC
1 CATGTATCCTAAT-GAAAGGGAATGTGTTTTA-GATTCCCAATCCTA-AAAAGAAT--GGA-AAC
* * * * * ** *
1229410 TGTTA-G-TATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA-AAAAC--GGTG
60 TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATT-T-TAAGAAAACTAGG-G
* * ** * * * * ** *
1229469 GAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGT
122 CAAGGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * ** * *
1229508 CATGTATCCTATTG-AAGGGAATGTGTTTTAGTTTCCCAATCCTGGAAAGAAT-GAGGACTGTTA
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGA-AACTATTA
*
1229571 CGAGAATCGATGCTTGTCTTATTTAA-GGAGTTAACTTTGATTTTAAGGAAAAATAGGGCCAA-G
65 CGAGAATCGATGCTTGTCTTATTTAAGGGA-TTAACTTTGATTTTAA-GAAAACTAGGG-CAAGG
* * * *
1229634 AAAAGAATTCCATGCACAAGAAAATCATTAATAT
127 AAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * *
1229668 CATTTATCCTAATG--AGGAGAATGTACTTATA-ATGCCTAATCATAAAATGAA-AGAAGA-TCA
1 CATGTATCCTAATGAAAGG-GAATGT-GTTTTAGATTCCCAATCCTAAAAAGAATGGAA-ACT-A
* * * * * ** * * * * * *
1229728 TTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTT--GCAAAAAT-TGGTAGG
62 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAG-AAAACTAGGGCAAG
* * * * *
1229790 GAAAATACCTTTCTTGC--ATAAAAAGCATCAATAT
126 GAAAAGA-ATTCCATGCAAAAAAAAAGCATCAATAT
* * ** ** * * *
1229824 CGTGTATCCTAACGAGAAGACAATGT-TTACA-ATAT-CTAATCCTAAAAAGAATAGG-GATTAT
1 CATGTATCCTAATGA-AAGGGAATGTGTTTTAGAT-TCCCAATCCTAAAAAGAAT-GGAAACTAT
* * * ** * * *
1229885 TATGAGTATTC-ATGATTGTCTTATTT-AGGAGACAAACTTTGATTCTTTATAAAACGT-TGG-A
63 TACGAG-AATCGATGCTTGTCTTATTTAAGG-GATTAACTTTGATT-TTAAGAAAAC-TAGGGCA
* ** *** * * * ** **
1229946 AAGAAAAGCTTTTGTTACGACACCAAAGCATCAATGC
124 AGGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * *
1229983 CGTGTATTCTAATG-AAGGGAATATGTTTTAGATTCCCAATCCTGAAAAGAATGGAGACTGTTAC
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
* * *
1230047 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGTGCAAAGAAA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAA-GAAAACTAGGGCAAGGAAA
**
1230111 AGAATTCCATGC-AAAAAAAATTATCAATAT
130 AGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * *
1230141 CATTTATCCTAATG--A-GG-A-G-CTTGTAG-TGCCTAATCATAAAATGAA-AGAAGA-TCATT
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAA-ACT-ATT
* * * * * ** * * * *
1230197 ACAAGAATCCG-TGTTTGTCTCATTTGAGGCACAAACTTAT-ACTTTACA-AAAA-T-TGGTAGG
64 ACGAGAAT-CGATGCTTGTCTTATTTAAGGGATTAACTT-TGATTTTA-AGAAAACTAGGGCAAG
** * * *
1230257 GAAAAAGCCTTTCTTGC------AAAGCATCCATAT
126 G-AAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * * * *
1230287 CGTGTATCCTAATAGGAA--GACTATG-TTTATGGTACCTAATCCTACAAAGAATAGG-GATTAC
1 CATGTATCCTAAT-GAAAGGGAATGTGTTTTA-GATTCCCAATCCTAAAAAGAAT-GGAAACTAT
* * * * ** * *
1230348 TATGAGTATTC-ATG-TTGTCTTTTTTAAGAGACAAACTTTTATTCTATCA-AAAAC-AGTGG-A
63 TACGAG-AATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATT-T-TAAGAAAACTAG-GGCA
* ** * * * * ** *
1230408 AAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGT
124 AGGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * ** * * *
1230445 CATGTATCC-CATTAAAAGGAATGTGTTTTAGTTTTTCAATCCTGAAAAGAATGTG-GACTGTTA
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATG-GAAACTATTA
* * * *
1230508 CGAGAATCGGTGCTTGTCTTATTTAAGGAATTAACTTTGATTTTAAGGAAAAATAGGGCAAAGAA
65 CGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAA-GAAAACTAGGGCAAGGAA
* * *
1230573 AAGAATTCCATGCAAAAGAAAATCATCAATGT
129 AAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * * *
1230605 CATTTATCCAAATG--AGGAGAATGTGCTTAAAATGCCTAATCGTAAAATGAA-AGAAGA-TCAT
1 CATGTATCCTAATGAAAGG-GAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAA-ACT-AT
* * * * * * * * * * *
1230666 TACTAAAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACA-AAAACTAGTG--AGG
63 TACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTA-AGAAAACTAGGGCAAGG
* *** * * **
1230728 AAAAAGACTTTTTTGCGAGACCAAAGCATCAATAT
127 -AAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * ** * *
1230763 CATGTATCCTAATGAGAAGAGTATGT-TTAT-GATACCAAAT-CTAGAAAAGAATGGGGATTACT
1 CATGTATCCTAATGA-AAGGGAATGTGTTTTAGATTCCCAATCCTA-AAAAGAATGGAAACTATT
** * * * ** * * *
1230825 ATAAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCA-AAAAC--GGTGGAA
64 ACGAG-AATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATT--TTAAGAAAACTAGG-GCAA
* ** * * ** * **
1230886 AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATAT
125 GGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* *
1230922 CATGTATCCTAATGAAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAAGAATGGAAACTGTTAC
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
*
1230987 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTGAGGAAAA-TAGGGCAAGGAAA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTT-AAGAAAACTAGGGCAAGGAAA
* *
1231051 AGAATTCCAAGCAAAAAAAAATCATCAATAT
130 AGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * *
1231082 CATTTATCCTAATG--AGGAGAATGTGCTTGTA-ATGCCTAATCATAATATGAA--AAAAGATCA
1 CATGTATCCTAATGAAAGG-GAATGTG-TTTTAGATTCCCAATCCTAAAAAGAATGGAAA-CT-A
* * * * * * ** * *
1231142 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA-AAAACTAGTGG---
62 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTA-AGAAAACTAG-GGCAA
* * * * **
1231203 GGAAAA-ATCCTTTCTTGCGAAACCAAAGCATCAATAT
125 GGAAAAGA--ATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * ** * *
1231240 CACGTATCCTAATGAGAAGAGTATGT-TTAT-GATACCTAAT-CTAGAAAAGAATGGGGATTACT
1 CATGTATCCTAATGA-AAGGGAATGTGTTTTAGATTCCCAATCCTA-AAAAGAATGGAAACTATT
** * * * * * * *
1231302 ATAAGTATTC-ATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCA-AAAAC--GGTGGAA
64 ACGAG-AATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATT--TTAAGAAAACTAGG-GCAA
* ** * * * * **
1231363 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATAT
125 GGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * *
1231399 CATGTATCCTAATGAAAGGGAATATGTTTTAGGTTTCCAATCCTAAAAAGAATGGAGACTGTTAC
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
*
1231464 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGAAAACTAAGGCAAGGAAAA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGAAAACTAGGGCAAGGAAAA
* *
1231529 GAATTCCATGGAAAAAAAAAATCATCAATAT
131 GAATTCCAT-GCAAAAAAAAAGCATCAATAT
* * * * * * * *
1231560 CATTTATCCTAATG--AGGAGAATGTGCTTGTA-ATGCCTAATCATAATATGAA-AGAAGA-TCA
1 CATGTATCCTAATGAAAGG-GAATGTG-TTTTAGATTCCCAATCCTAAAAAGAATGGAA-ACT-A
* * ** * ** * * * *
1231620 TTA-GTAGAATAC-ATGTTTGTCTCATTGGAGGCACGAACTTAGACTTTACA-AAAA-T-TGGTA
62 TTACG-AGAAT-CGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTA-AGAAAACTAGGGCA
* * * * ** *
1231680 GGGAAAA-ATCCTTTCTTG-TGAAACAAAGCATCAATAT
124 AGGAAAAGA--ATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * ** * *
1231717 CGTGTATCCTAAAT-AGAA--GACTATG-TTTACAATACCTAATCCTTAAAGGAATGGGGATTAC
1 CATGTATCCT-AATGA-AAGGGAATGTGTTTTA-GATTCCCAATCCTAAAAAGAATGGAAACTAT
* * * * * ** * *
1231778 TATGAGTATTC-ATGTTTGTCTTATGTAAGAGACAAACTTTGATTCTTTAA-AAAA-TGGGGGAA
63 TACGAG-AATCGATGCTTGTCTTATTTAAGGGATTAACTTTGA-T-TTTAAGAAAACTAGGGCAA
* ** * * * * ** * *
1231840 AGAAAAGCTTTTCTTGCGACACCAAAGCGTCAATTT
125 GGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * *
1231876 GATGTATCCTAGTG-AAGGGAATGTGTTTTAGGTTCCTAATCTTGAAAAGAATGGAGATTGTTAC
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
* * *
1231940 GAGAATCGATGCTTGTCATATTTAAGGGATTAACATTGATTTTAAAGGAAAA-TAAGG-AA--AA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTT-AA-GAAAACTAGGGCAAGGAA
* * * * * *
1232001 GAAGATTTCCCTACAAAAGAAAATCATCAGTAT
129 -AAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * ** ** *
1232034 CATTTATCCAAATTAGAA--GAATGTGCTTATA-ATGCGTAATCAC-AAATTGAAT-GAAGATTA
1 CATGTATCCTAATGA-AAGGGAATGTG-TTTTAGATTCCCAATC-CTAAAAAGAATGGAA-ACTA
* ** * * * *
1232094 TTACTAGAATCGATATTTGCCTTATTT--GGGGTGCGAACTTTGACTTTACA-AAAACT-GGTG-
62 TTACGAGAATCGATGCTTGTCTTATTTAAGGGAT--TAACTTTGATTTTA-AGAAAACTAGG-GC
* ** * * * **
1232154 -GGGTAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
123 AAGG-AAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * *
1232192 CGTGTATCCTAATAGGAA--GACTATG-TTTATGGTACCTAAT-CTAGAAAAGAATGGGGATTAC
1 CATGTATCCTAAT-GAAAGGGAATGTGTTTTA-GATTCCCAATCCTA-AAAAGAAT--GGA-AAC
* * * * * ** *
1232253 TGTTA-G-TATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA-AAAAC--GGTG
60 TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATT-T-TAAGAAAACTAGG-G
* * ** * * * * ** *
1232312 GAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGT
122 CAAGGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * ** * *
1232351 CATGTATCCTATTG-AAGGGAATGTGTTTTAGTTTCCCAATCCTGGAAAGAAT-GAGGACTGTTA
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGA-AACTATTA
*
1232414 CGAGAATCGATGCTTGTCTTATTTAA-GGAGTTAACTTTGATTTTAAGGAAAAATAGGGCCAA-G
65 CGAGAATCGATGCTTGTCTTATTTAAGGGA-TTAACTTTGATTTTAA-GAAAACTAGGG-CAAGG
* * * *
1232477 AAAAGAATTCCATGCACAAGAAAATCATTAATAT
127 AAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * *
1232511 CATTTATCCTAATG--AGGAGAATGTACTTATA-ATGCCTAATCATAAAATGAA-AGAAGA-TCA
1 CATGTATCCTAATGAAAGG-GAATGT-GTTTTAGATTCCCAATCCTAAAAAGAATGGAA-ACT-A
* * * * * ** * * * * * *
1232571 TTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTT--GCAAAAAT-TGGTAGG
62 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAG-AAAACTAGGGCAAG
* * * * *
1232633 GAAAATACCTTTCTTGC--ATAAAAAGCATCAATAT
126 GAAAAGA-ATTCCATGCAAAAAAAAAGCATCAATAT
* * ** ** * * *
1232667 CGTGTATCCTAACGAGAAGACAATGT-TTACA-ATAT-CTAATCCTAAAAAGAATAGG-GATTAT
1 CATGTATCCTAATGA-AAGGGAATGTGTTTTAGAT-TCCCAATCCTAAAAAGAAT-GGAAACTAT
* * * ** * * *
1232728 TATGAGTATTC-ATGATTGTCTTATTT-AGGAGACAAACTTTGATTCTTTATAAAACGT-TGG-A
63 TACGAG-AATCGATGCTTGTCTTATTTAAGG-GATTAACTTTGATT-TTAAGAAAAC-TAGGGCA
* ** *** * * * ** **
1232789 AAGAAAAGCTTTTGTTACGACACCAAAGCATCAATGC
124 AGGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * *
1232826 CGTGTATTCTAATG-AAGGGAATATGTTTTAGATTCCCAATCCTGAAAAGAATGGAGACTGTTAC
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
* * *
1232890 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGTGCAAAGAAA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAA-GAAAACTAGGGCAAGGAAA
**
1232954 AGAATTCCATGC-AAAAAAAATTATCAATAT
130 AGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * *
1232984 CATTTATCCTAATG--A-GG-A-G-CTTGTAG-TGCCTAATCATAAAATGAA-AGAAGA-TCATT
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAA-ACT-ATT
* * * * * ** * * * *
1233040 ACAAGAATCCG-TGTTTGTCTCATTTGAGGCACAAACTTAT-ACTTTACA-AAAA-T-TGGTAGG
64 ACGAGAAT-CGATGCTTGTCTTATTTAAGGGATTAACTT-TGATTTTA-AGAAAACTAGGGCAAG
** * * ** *
1233100 GAAAAAGCCTTTCTTGCAAAACCAAAGCATCCATAT
126 G-AAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * * * *
1233136 CGTGTATCCTAATAGGAA--GACTATG-TTTATGGTACCTAATCCTACAAAGAATAGG-GATTAC
1 CATGTATCCTAAT-GAAAGGGAATGTGTTTTA-GATTCCCAATCCTAAAAAGAAT-GGAAACTAT
* * * * ** * *
1233197 TATGAGTATTC-ATG-TTGTCTTTTTTAAGAGACAAACTTTTATTCTATCA-AAAAC-AGTGG-A
63 TACGAG-AATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATT-T-TAAGAAAACTAG-GGCA
* ** * * * * ** *
1233257 AAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGT
124 AGGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * ** * * *
1233294 CATGTATCC-CATTAAAAGGAATGTGTTTTAGTTTTTCAATCCTGAAAAGAATGTG-GACTGTTA
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATG-GAAACTATTA
* * * *
1233357 CGAGAATCGGTGCTTGTCTTATTTAAGGAATTAACTTTGATTTTAAGGAAAAATAGGGCAAAGAA
65 CGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAA-GAAAACTAGGGCAAGGAA
* * *
1233422 AAGAATTCCATGCAAAAGAAAATCATCAATGT
129 AAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * * *
1233454 CATTTATCCAAATG--AGGAGAATGTGCTTAAAATGCCTAATCGTAAAATGAA-AGAAGA-TCAT
1 CATGTATCCTAATGAAAGG-GAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAA-ACT-AT
* * * * * * * * * * *
1233515 TACTAAAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACA-AAAACTAGTG--AGG
63 TACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTA-AGAAAACTAGGGCAAGG
* *** * * **
1233577 AAAAAGACTTTTTTGCGAGACCAAAGCATCAATAT
127 -AAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * ** * *
1233612 CATGTATCCTAATGAGAAGAGTATGT-TTAT-GATACCAAAT-CTAGAAAAGAATGGGGATTACT
1 CATGTATCCTAATGA-AAGGGAATGTGTTTTAGATTCCCAATCCTA-AAAAGAATGGAAACTATT
** * * * ** * * *
1233674 ATAAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCA-AAAAC--GGTGGAA
64 ACGAG-AATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATT--TTAAGAAAACTAGG-GCAA
* ** * * ** * **
1233735 AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATAT
125 GGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* *
1233771 CATGTATCCTAATGAAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAAGAATGGAAACTGTTAC
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
*
1233836 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTGAGGAAAA-TAGGGCAAGGAAA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTT-AAGAAAACTAGGGCAAGGAAA
* *
1233900 AGAATTCCAAGCAAAAAAAAATCATCAATAT
130 AGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * *
1233931 CATTTATCCTAATG--AGGAGAATGTGCTTGTA-ATGCCTAATCATAATATGAA--AAAAGATCA
1 CATGTATCCTAATGAAAGG-GAATGTG-TTTTAGATTCCCAATCCTAAAAAGAATGGAAA-CT-A
* * * * * * ** * *
1233991 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA-AAAACTAGTGG---
62 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTA-AGAAAACTAG-GGCAA
* * * * **
1234052 GGAAAA-ATCCTTTCTTGCGAAACCAAAGCATCAATAT
125 GGAAAAGA--ATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * ** * *
1234089 CACGTATCCTAATGAGAAGAGTATGT-TTAT-GATACCTAAT-CTAGAAAAGAATGGGGATTACT
1 CATGTATCCTAATGA-AAGGGAATGTGTTTTAGATTCCCAATCCTA-AAAAGAATGGAAACTATT
** * * * * * * *
1234151 ATAAGTATTC-ATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCA-AAAAC--GGTGGAA
64 ACGAG-AATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATT--TTAAGAAAACTAGG-GCAA
* ** * * * * **
1234212 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATAT
125 GGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * *
1234248 CATGTATCCTAATGAAAGGGAATATGTTTTAGGTTTCCAATCCTAAAAAGAATGGAGACTGTTAC
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
*
1234313 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGAAAACTAAGGCAAGGAAAA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGAAAACTAGGGCAAGGAAAA
* *
1234378 GAATTCCATGGAAAAAAAAAATCATCAATAT
131 GAATTCCAT-GCAAAAAAAAAGCATCAATAT
* * * * * * * *
1234409 CATTTATCCTAATG--AGGAGAATGTGCTTGTA-ATGCCTAATCATAATATGAA-AGAAGA-TCA
1 CATGTATCCTAATGAAAGG-GAATGTG-TTTTAGATTCCCAATCCTAAAAAGAATGGAA-ACT-A
* * ** * ** * * * *
1234469 TTA-GTAGAATAC-ATGTTTGTCTCATTGGAGGCACGAACTTAGACTTTACA-AAAA-T-TGGTA
62 TTACG-AGAAT-CGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTA-AGAAAACTAGGGCA
* * * * ** *
1234529 GGGAAAA-ATCCTTTCTTG-TGAAACAAAGCATCAATAT
124 AGGAAAAGA--ATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * ** * *
1234566 CGTGTATCCTAAAT-AGAA--GACTATG-TTTACAATACCTAATCCTTAAAGGAATGGGGATTAC
1 CATGTATCCT-AATGA-AAGGGAATGTGTTTTA-GATTCCCAATCCTAAAAAGAATGGAAACTAT
* * * * * ** * *
1234627 TATGAGTATTC-ATGTTTGTCTTATGTAAGAGACAAACTTTGATTCTTTAA-AAAA-TGGGGGAA
63 TACGAG-AATCGATGCTTGTCTTATTTAAGGGATTAACTTTGA-T-TTTAAGAAAACTAGGGCAA
* ** * * * * ** * *
1234689 AGAAAAGCTTTTCTTGCGACACCAAAGCGTCAATTT
125 GGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * *
1234725 GATGTATCCTAGTG-AAGGGAATGTGTTTTAGGTTCCTAATCTTGAAAAGAATGGAGATTGTTAC
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
* * *
1234789 GAGAATCGATGCTTGTCATATTTAAGGGATTAACATTGATTTTAAAGGAAAA-TAAGG-AA--AA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTT-AA-GAAAACTAGGGCAAGGAA
* * * * * *
1234850 GAAGATTTCCCTACAAAAGAAAATCATCAGTAT
129 -AAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * ** ** *
1234883 CATTTATCCAAATTAGAA--GAATGTGCTTATA-ATGCGTAATCAC-AAATTGAAT-GAAGATTA
1 CATGTATCCTAATGA-AAGGGAATGTG-TTTTAGATTCCCAATC-CTAAAAAGAATGGAA-ACTA
* ** * * * *
1234943 TTACTAGAATCGATATTTGCCTTATTT--GGGGTGCGAACTTTGACTTTACA-AAAACT-GGTG-
62 TTACGAGAATCGATGCTTGTCTTATTTAAGGGAT--TAACTTTGATTTTA-AGAAAACTAGG-GC
* ** * * * **
1235003 -GGGTAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
123 AAGG-AAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * *
1235041 CGTGTATCCTAATAGGAA--GACTATG-TTTATGGTACCTAAT-CTAGAAAAGAATGGGGATTAC
1 CATGTATCCTAAT-GAAAGGGAATGTGTTTTA-GATTCCCAATCCTA-AAAAGAAT--GGA-AAC
* * * * * ** *
1235102 TGTTA-G-TATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA-AAAAC--GGTG
60 TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATT-T-TAAGAAAACTAGG-G
* * ** * * * * ** *
1235161 GAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGT
122 CAAGGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * ** * *
1235200 CATGTATCCTATTG-AAGGGAATGTGTTTTAGTTTCCCAATCCTGGAAAGAAT-GAGGACTGTTA
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGA-AACTATTA
*
1235263 CGAGAATCGATGCTTGTCTTATTTAA-GGAGTTAACTTTGATTTTAAGGAAAAATAGGGCCAA-G
65 CGAGAATCGATGCTTGTCTTATTTAAGGGA-TTAACTTTGATTTTAA-GAAAACTAGGG-CAAGG
* * * *
1235326 AAAAGAATTCCATGCACAAGAAAATCATTAATAT
127 AAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * *
1235360 CATTTATCCTAATG--AGGAGAATGTACTTATA-ATGCCTAATCATAAAATGAA-AGAAGA-TCA
1 CATGTATCCTAATGAAAGG-GAATGT-GTTTTAGATTCCCAATCCTAAAAAGAATGGAA-ACT-A
* * * * * ** * * * * * *
1235420 TTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTT--GCAAAAAT-TGGTAGG
62 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAG-AAAACTAGGGCAAG
* * * * *
1235482 GAAAATACCTTTCTTGC--ATAAAAAGCATCAATAT
126 GAAAAGA-ATTCCATGCAAAAAAAAAGCATCAATAT
* * ** ** * * *
1235516 CGTGTATCCTAACGAGAAGACAATGT-TTACA-ATAT-CTAATCCTAAAAAGAATAGG-GATTAT
1 CATGTATCCTAATGA-AAGGGAATGTGTTTTAGAT-TCCCAATCCTAAAAAGAAT-GGAAACTAT
* * * ** * * *
1235577 TATGAGTATTC-ATGATTGTCTTATTT-AGGAGACAAACTTTGATTCTTTATAAAACGT-TGG-A
63 TACGAG-AATCGATGCTTGTCTTATTTAAGG-GATTAACTTTGATT-TTAAGAAAAC-TAGGGCA
* ** *** * * * ** **
1235638 AAGAAAAGCTTTTGTTACGACACCAAAGCATCAATGC
124 AGGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * *
1235675 CGTGTATTCTAATG-AAGGGAATATGTTTTAGATTCCCAATCCTGAAAAGAATGGAGACTGTTAC
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
* * *
1235739 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGTGCAAAGAAA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAA-GAAAACTAGGGCAAGGAAA
**
1235803 AGAATTCCATGC-AAAAAAAATTATCAATAT
130 AGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * *
1235833 CATTTATCCTAATG--A-GG-A-G-CTTGTAG-TGCCTAATCATAAAATGAA-AGAAGA-TCATT
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAA-ACT-ATT
* * * * * ** * * * *
1235889 ACAAGAATCCG-TGTTTGTCTCATTTGAGGCACAAACTTAT-ACTTTACA-AAAA-T-TGGTAGG
64 ACGAGAAT-CGATGCTTGTCTTATTTAAGGGATTAACTT-TGATTTTA-AGAAAACTAGGGCAAG
** * * ** *
1235949 GAAAAAGCCTTTCTTGCAAAACCAAAGCATCCATAT
126 G-AAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * * * *
1235985 CGTGTATCCTAATAGGAA--GACTATG-TTTATGGTACCTAATCCTACAAAGAATAGG-GATTAC
1 CATGTATCCTAAT-GAAAGGGAATGTGTTTTA-GATTCCCAATCCTAAAAAGAAT-GGAAACTAT
* * * * ** * *
1236046 TATGAGTATTC-ATG-TTGTCTTTTTTAAGAGACAAACTTTTATTCTATCA-AAAAC-AGTGG-A
63 TACGAG-AATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATT-T-TAAGAAAACTAG-GGCA
* ** * * * * ** *
1236106 AAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGT
124 AGGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * ** * * *
1236143 CATGTATCC-CATTAAAAGGAATGTGTTTTAGTTTTTCAATCCTGAAAAGAATGTG-GACTGTTA
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATG-GAAACTATTA
* * * *
1236206 CGAGAATCGGTGCTTGTCTTATTTAAGGAATTAACTTTGATTTTAAGGAAAAATAGGGCAAAGAA
65 CGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAA-GAAAACTAGGGCAAGGAA
* * *
1236271 AAGAATTCCATGCAAAAGAAAATCATCAATGT
129 AAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * * *
1236303 CATTTATCCAAATG--AGGAGAATGTGCTTAAAATGCCTAATCGTAAAATGAA-AGAAGA-TCAT
1 CATGTATCCTAATGAAAGG-GAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAA-ACT-AT
* * * * * * * * * * *
1236364 TACTAAAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACA-AAAACTAGTG--AGG
63 TACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTA-AGAAAACTAGGGCAAGG
* *** * * **
1236426 AAAAAGACTTTTTTGCGAGACCAAAGCATCAATAT
127 -AAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * ** * *
1236461 CATGTATCCTAATGAGAAGAGTATGT-TTAT-GATACCAAAT-CTAGAAAAGAATGGGGATTACT
1 CATGTATCCTAATGA-AAGGGAATGTGTTTTAGATTCCCAATCCTA-AAAAGAATGGAAACTATT
** * * * ** * * *
1236523 ATAAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCA-AAAAC--GGTGGAA
64 ACGAG-AATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATT--TTAAGAAAACTAGG-GCAA
* ** * * ** * **
1236584 AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATAT
125 GGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* *
1236620 CATGTATCCTAATGAAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAAGAATGGAAACTGTTAC
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
*
1236685 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTGAGGAAAA-TAGGGCAAGGAAA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTT-AAGAAAACTAGGGCAAGGAAA
* *
1236749 AGAATTCCAAGCAAAAAAAAATCATCAATAT
130 AGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * *
1236780 CATTTATCCTAATG--AGGAGAATGTGCTTGTA-ATGCCTAATCATAATATGAA--AAAAGATCA
1 CATGTATCCTAATGAAAGG-GAATGTG-TTTTAGATTCCCAATCCTAAAAAGAATGGAAA-CT-A
* * * * * * ** * * * * *
1236840 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA-AAAA-T-TGGTAGG
62 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTA-AGAAAACTAGGGCAAG
* * * ** *
1236902 GAAAA-ATCCTTTCTTG-TGAAACAAAGCATCAATAT
126 GAAAAGA--ATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * ** * * * *
1236937 CGTGTATCCTAAAT-AGAA--GACTATG-TTTACAATACCTTATCCTTAAAAGACTAGG-GATTA
1 CATGTATCCT-AATGA-AAGGGAATGTGTTTTA-GATTCCCAATCCTAAAAAGAAT-GGAAACTA
* * * * * * ** *
1236997 CTATGAGTATTC-ATGTTTGTCTTATGTAAGAGACAAACTTTGATTCTTTAA-AAAA-T-GGTGG
62 TTACGAG-AATCGATGCTTGTCTTATTTAAGGGATTAACTTTGA-T-TTTAAGAAAACTAGG-GC
* ** * * * * ** *
1237058 AA-AAAAAGCTTTTCTTGCGACACCAAAGCGA-CAATTT
123 AAGGAAAAGAATTCCATGCAAAAAAAAAGC-ATCAATAT
* * * * * * *
1237095 GATGTATCCTAATG-AAGGGAATGTGTTTTAGGTTCCTAATCCTGAAAAGAATGGAGATTGTTAC
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
* * *
1237159 GAGAATCGATGCTTGTCATATTTAAGGGATTAACATTGATTTTAAGGAAAA-TAGGG-AA-AAAA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAA-GAAAACTAGGGCAAGGAAA
* * * * * * *
1237221 ATATTTCCCTACAAAAGAAAATCTTCAATAT
130 AGAATTCCATGCAAAAAAAAAGCATCAATAT
* * ** ** *
1237252 CATTTATCCTAATGAGAA--GAATGTGTTTATAG-TGCGTAATCAC-AAATTGAAT-GAAGAATA
1 CATGTATCCTAATGA-AAGGGAATGTGTTT-TAGATTCCCAATC-CTAAAAAGAATGGAA-ACTA
* * * * * * * ** * * * *
1237312 TTACTAGAATCTATGTTTGCCTCATTTGAGGTACGAACTTAGACTTTACA-AAAATCGACGG---
62 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTA-AGAAAA-CTAGGGCAA
* * * * ** *
1237373 GGAAAA-ATCCTTTCTTGCGAAACCAAATCATCAATAT
125 GGAAAAGA--ATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * * * * *
1237410 CGTGTATCCTAGTAGGAA--GACTTTG-TTTATGGTACCTAATCCTGAAAAGAATAGG-GATTAC
1 CATGTATCCTAAT-GAAAGGGAATGTGTTTTA-GATTCCCAATCCTAAAAAGAAT-GGAAACTAT
* * * * ** * * *
1237471 TATGAGCATTC-ATG-TTGTCTTTTTTAAGAGACAAACTTTGATCCTATCA-AAAAC--GGTGGA
63 TACGAG-AATCGATGCTTGTCTTATTTAAGGGATTAACTTTGAT--TTTAAGAAAACTAGG-GCA
* * ** * * ** * ** *
1237531 AAGAAATGCTTTTCTTGTGACACCAAAGCATCAATGT
124 AGGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * ** *
1237568 CATGTATCCTATTGAAA-GGAATGTGTTTTAGTTTCTCAATCCTAAAAAGAATGGGGACTATTAT
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
* * * *
1237632 GAGAATCGATGCTTGTCTTTTTTAAGGAATTAACTTTGATTTTAAGGAAAAATAGGGCAAAG-AA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAA-GAAAACTAGGGCAAGGAAA
* *
1237696 AGAATTCCATGCAAAAGAAAATCATCAATAT
130 AGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * * * * * * * * *
1237727 CATTTATCCAAATG-AAGAGAATGTGCTTAAAATGCCTAATCATAAAATGAA-AGAAGA-TCATT
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAA-ACT-ATT
* * * * * * ** * * *
1237789 ACTAGAATCTATGTTTGTCTCATTTGAGGTACGAACTTCGACTTTACA-AAAACTAGTG--AGGA
64 ACGAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTA-AGAAAACTAGGGCAAGG-
** * * * **
1237851 AAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
127 AAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * ** * * ** * *
1237885 CATGTATCCTAATGAGAA--GACTATG-TTTATGATACGTAATCTTGAAAAGAATGGGGATTACT
1 CATGTATCCTAATGA-AAGGGAATGTGTTTTA-GATTCCCAATCCTAAAAAGAATGGAAACTATT
** * * * ** * * *
1237947 ATAAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCA-AAAAC--GGTGGAA
64 ACGAG-AATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATT--TTAAGAAAACTAGG-GCAA
* ** * * * * ** *
1238008 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
125 GGAAAAGAATTCCATGCAAAAAAAAAGCATCAATAT
* * * *
1238044 CATGTATCCTAATGAAAGGGAATGTGTTTTAGGTTTCCAATCCTAAAAAGAATGGAGACTATTAT
1 CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
* * *
1238109 AAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGGAAAA-TAGGGAAAGGGAA
66 GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAA-GAAAACTAGGGCAAGGAAA
*
1238173 AGAATTCCATGCAAAAAAAAAATCATCAATAT
130 AGAATTCCATGC-AAAAAAAAAGCATCAATAT
* *
1238205 CATTTATCCCAATGA
1 CATGTATCCTAATGA
1238220 GGAGAATGTG
Statistics
Matches: 8129, Mismatches: 2478, Indels: 1586
0.67 0.20 0.13
Matches are distributed among these distances:
146 21 0.00
147 1 0.00
148 1 0.00
149 1 0.00
150 13 0.00
151 81 0.01
152 297 0.04
153 82 0.01
154 7 0.00
155 31 0.00
156 357 0.04
157 920 0.11
158 2227 0.27
159 2164 0.27
160 1680 0.21
161 246 0.03
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (160 bp):
CATGTATCCTAATGAAAGGGAATGTGTTTTAGATTCCCAATCCTAAAAAGAATGGAAACTATTAC
GAGAATCGATGCTTGTCTTATTTAAGGGATTAACTTTGATTTTAAGAAAACTAGGGCAAGGAAAA
GAATTCCATGCAAAAAAAAAGCATCAATAT
Found at i:1240456 original size:22 final size:23
Alignment explanation
Indices: 1240431--1240475 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
1240421 TGTATACAGG
*
1240431 CTTT-CGTTAAAAAAAATTTTTT
1 CTTTCCGTTAAAAAAAAGTTTTT
* *
1240453 CTTTCCTTTAAGAAAAAGTTTTT
1 CTTTCCGTTAAAAAAAAGTTTTT
1240476 GCCCCTTGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.33, C:0.11, G:0.07, T:0.49
Consensus pattern (23 bp):
CTTTCCGTTAAAAAAAAGTTTTT
Found at i:1240864 original size:33 final size:33
Alignment explanation
Indices: 1240827--1240893 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
1240817 AAGTGCACCA
1240827 AAGTGCTCATCCATACGCTGCGAAAGTGAAGTG
1 AAGTGCTCATCCATACGCTGCGAAAGTGAAGTG
* ** * *
1240860 AAGTGCTCATTCATGTGTTGTGAAAGTGAAGTG
1 AAGTGCTCATCCATACGCTGCGAAAGTGAAGTG
1240893 A
1 A
1240894 TCAACTCTCG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (33 bp):
AAGTGCTCATCCATACGCTGCGAAAGTGAAGTG
Found at i:1248473 original size:13 final size:13
Alignment explanation
Indices: 1248455--1248483 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
1248445 ACAATTCATC
1248455 ATGTATCGATACA
1 ATGTATCGATACA
1248468 ATGTATCGATACA
1 ATGTATCGATACA
1248481 ATG
1 ATG
1248484 GGCCATGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1248500 original size:33 final size:33
Alignment explanation
Indices: 1248434--1248501 Score: 82
Period size: 33 Copynumber: 2.1 Consensus size: 33
1248424 CGTTAGAAGT
* * * *
1248434 AATGTATCGATACAATTCATCATGTATCGATAC
1 AATGTATCGATACAATGCACCATGCATCAATAC
**
1248467 AATGTATCGATACAATGGGCCATGCATCAATAC
1 AATGTATCGATACAATGCACCATGCATCAATAC
1248500 AA
1 AA
1248502 ACAGTGGTAG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (33 bp):
AATGTATCGATACAATGCACCATGCATCAATAC
Found at i:1248555 original size:20 final size:19
Alignment explanation
Indices: 1248530--1248602 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
1248520 CTGCCAGTTT
**
1248530 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
1248550 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
* *
1248569 CATGTAACGATACAAAGCATA
1 CATGTATCGATACAATG-A-A
1248590 -ATGTATCGATACA
1 CATGTATCGATACA
1248603 TCTGGGTGTG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
19 17 0.37
20 28 0.61
21 1 0.02
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:1249187 original size:159 final size:159
Alignment explanation
Indices: 1248893--1249220 Score: 419
Period size: 159 Copynumber: 2.1 Consensus size: 159
1248883 GATCCTAACT
* * * *
1248893 TGTATCCTAACGAGAAGTCTATGTTTACAATACCTAATCCTTAAATGAATGAGGATTACTATGAG
1 TGTATCCTAACGAGAAGACTATGTTTACAATACCTAATCCTGAAAAGAATGAGGATTACTATAAG
* * * * *
1248958 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCTTATAAAACGGTGGAAAGAAAAGCC
66 GATTCATGTTTGTCTAACTTAAGAGACAAACTTTAATTCCTTATAAAAAGGTGGAAAGAAAAGCC
*
1249023 TTTCTTGCAAAACCAAAGCATCAATATCA
131 TTTCTTACAAAACCAAAGCATCAATATCA
* * ***
1249052 TGTACCCTAATGAGAAGACTATGTTTATGGTACCTAATCCTGAAAAGAAT-AGGGATTACTATAA
1 TGTATCCTAACGAGAAGACTATGTTTACAATACCTAATCCTGAAAAGAATGA-GGATTACTATAA
1249116 GGATTCATGTTTGTCTAACTTAAGAGACAAACTTTAATT-CTT-TGAAAAAGGATGGAAAGAAAA
65 GGATTCATGTTTGTCTAACTTAAGAGACAAACTTTAATTCCTTAT-AAAAAGG-TGGAAAGAAAA
* * ** * *
1249179 GCTTTTCTTACGACCCCAAAGCATTAATGTCA
128 GCCTTTCTTACAAAACCAAAGCATCAATATCA
1249211 TGTATCCTAA
1 TGTATCCTAA
1249221 AAAAGGGAAT
Statistics
Matches: 144, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
157 1 0.01
158 10 0.07
159 133 0.92
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (159 bp):
TGTATCCTAACGAGAAGACTATGTTTACAATACCTAATCCTGAAAAGAATGAGGATTACTATAAG
GATTCATGTTTGTCTAACTTAAGAGACAAACTTTAATTCCTTATAAAAAGGTGGAAAGAAAAGCC
TTTCTTACAAAACCAAAGCATCAATATCA
Found at i:1249236 original size:159 final size:158
Alignment explanation
Indices: 1248923--1249261 Score: 382
Period size: 159 Copynumber: 2.1 Consensus size: 158
1248913 ATGTTTACAA
* * * * * *
1248923 TACCTAATCCTTAAATGAATGAGGATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
1 TACCTAATCCTAAAAAGAATGAGGATTACTATAAGGATTCATGTTTGTCTAACTTAAGAGACAAA
* * *
1248988 CTTTGATTCCTTATAAAACGGTGGAAAGAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCAT
66 CTTTAATTCCTTATAAAAAGGTGGAAAGAAAAGCCTTTCTTACAAAACCAAAGCATCAATATCAT
* *
1249053 GTACCCTAATGAGAAGACTATG-TTTATGG
131 GTACCCTAA-GAAAAGAATATGTTTTA-GG
*
1249082 TACCTAATCCTGAAAAGAAT-AGGGATTACTATAAGGATTCATGTTTGTCTAACTTAAGAGACAA
1 TACCTAATCCTAAAAAGAATGA-GGATTACTATAAGGATTCATGTTTGTCTAACTTAAGAGACAA
* * ** * *
1249146 ACTTTAATT-CTT-TGAAAAAGGATGGAAAGAAAAGCTTTTCTTACGACCCCAAAGCATTAATGT
65 ACTTTAATTCCTTAT-AAAAAGG-TGGAAAGAAAAGCCTTTCTTACAAAACCAAAGCATCAATAT
* *
1249209 CATGTATCCTAA-AAAAGGGAATGTGTTTTAGG
128 CATGTACCCTAAGAAAA--GAATATGTTTTAGG
* *
1249241 TTCCCAATCCTAAAAAGAATG
1 TACCTAATCCTAAAAAGAATG
1249262 GAGACTGTTA
Statistics
Matches: 151, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
157 4 0.03
158 10 0.07
159 133 0.88
160 4 0.03
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (158 bp):
TACCTAATCCTAAAAAGAATGAGGATTACTATAAGGATTCATGTTTGTCTAACTTAAGAGACAAA
CTTTAATTCCTTATAAAAAGGTGGAAAGAAAAGCCTTTCTTACAAAACCAAAGCATCAATATCAT
GTACCCTAAGAAAAGAATATGTTTTAGG
Found at i:1250192 original size:474 final size:470
Alignment explanation
Indices: 1249279--1250530 Score: 1535
Period size: 474 Copynumber: 2.6 Consensus size: 470
1249269 TTATGAGTTT
* *
1249279 GGAAAAAGCCTTTT-TTGTGAAACAAAGCATCAATATCATGTAT-CTTATGAGAAGACTATATTT
1 GGAAAAAG-CTTTTCTTG-CAAACAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
* * * * * * *
1249342 ACAATACCAAATCCTGACAAGAATGGGGATTA-TCATGAGC-ATTCATGGTTGTCTTATTTAAGA
64 ATAGTGCCTAATCCTGAAAAGAAT-GGGATTAGT-AT-AACTATTCATGTTTGTCTTATTTAAGA
* * * * *
1249405 GACAAACTTTAATTCTTTAAAAAATGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCGTCAA
126 GACAAACTTTGATTCTATCAAAAATGGT-GGAA-AAAAGCTTTTCTTGCGACACCAAAGCCTCAA
* * * * *
1249470 TGTGATGTATCCTAATGAAGGGAATTTGTTTTAGGTTCCTAATCTTGAAAAGAAGGGAGACCGTT
189 TGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCAAATCTTGAAAAGAATGGAGACTGTT
* * *
1249535 ACGAGAATCGATGCTTGTCATATTTAA-AGGTTTAACTTTGATTTTGACGAAAATAGGGAAAAGA
254 ACGAGAATCGATGCTTGTCTTATTTAAGA-GATAAACTTTGATTTT-ACGAAAATAGGGAAAAGA
* * *
1249599 AAAGATTTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAG
317 AAAGATTTCCACGCAAAAAAAAATCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTACAG
* * * * * * *
1249664 TGCGTAATCGCAAATTGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAA
382 TGCGTAATCACAAAATGAATCAAGATCAATACTAAAATCCATGTTTGGCTCATTTGAGGCACAAA
*
1249729 CTTAGACTTTACAAAAACTGGTGG
447 CTTAGACTTTACAAAAACTGGTGA
* *
1249753 GGAAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGCATCCTTATGAGAAGACTACGTTT
1 GGAAAAAGCTTTTCTTGC-AAA-CAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
* *
1249818 ATGGTGCCTAATCCTGAAAAGAATGGCGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGG
64 ATAGTGCCTAATCCTGAAAAGAATGG-GATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGA
* * *
1249883 TAAACTTTGATTCTATCAAAAACGGTGGAAAAAAGCTTTTCTTGCAACACCAAAGCCTCAATGTC
128 CAAACTTTGATTCTATCAAAAATGGTGGAAAAAAGCTTTTCTTGCGACACCAAAGCCTCAATGTC
* * * *
1249948 AAGTATCCTAATGAAGGGAAGGTGTTTTAGGTTCAAAATCTTGAAAACAATGGAGACTGTTACGA
193 ATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCAAATCTTGAAAAGAATGGAGACTGTTACGA
* * * *
1250013 GAATCGATG-TTAGTCTTTTTTAAGAGATGAACTTTGATTTTATGTAAAATAGGGCAAAGAAAAG
258 GAATCGATGCTT-GTCTTATTTAAGAGATAAACTTTGATTTTACG-AAAATAGGGAAAAGAAAAG
* * * * *
1250077 ATTTCTACGCAAAATAAAATCATCAATGTCATTTATCCTAATAAGGAGAATGTGTTTACAGTGTG
321 ATTTCCACGCAAAAAAAAATCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTACAGTGCG
* * * *
1250142 TAATCACAAAATGAATCAAGATCAATATTAAAATCCTTTTTTGGCTCATTTGAGGCACAGACTTA
386 TAATCACAAAATGAATCAAGATCAATACTAAAATCCATGTTTGGCTCATTTGAGGCACAAACTTA
*
1250207 GACTTTACAAAAATTGGTGA
451 GACTTTACAAAAACTGGTGA
* * * * * * * *
1250227 GAAAAAATCATTTCTTGCAAATCATTAGCACCAATATCTTGTATCCTAATGAGAAGGCTATGTTT
1 GGAAAAAGCTTTTCTTGCAAA-CA-AAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
* * * * * * * *
1250292 ATAGAGCCTAATCGTGAAAAGAATCGGGAATAGTATGAGTATTCCTGTTTGTCATATTTATGAGA
64 ATAGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGA
1250357 CAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAAGCTTTTCTTGCGACACCAAAGCCTCAATG
128 CAAACTTTGATTCTATCAAAAATGGTGG--AAAAAAGCTTTTCTTGCGACACCAAAGCCTCAATG
* * * * * * * * *
1250422 TCTTGTATCATTATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAGAGTGGAGACTATTAT
191 TCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCAAATCTTGAAAAGAATGGAGACTGTTAC
*
1250487 GAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTA
256 GAGAATCGATGCTTGTCTTATTTAAGAGATAAACTTTGATTTTA
1250531 AGGAAATGAT
Statistics
Matches: 666, Mismatches: 97, Indels: 28
0.84 0.12 0.04
Matches are distributed among these distances:
473 14 0.02
474 408 0.61
475 30 0.05
476 211 0.32
477 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (470 bp):
GGAAAAAGCTTTTCTTGCAAACAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTAT
AGTGCCTAATCCTGAAAAGAATGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAA
ACTTTGATTCTATCAAAAATGGTGGAAAAAAGCTTTTCTTGCGACACCAAAGCCTCAATGTCATG
TATCCTAATGAAGGGAATGTGTTTTAGGTTCCAAATCTTGAAAAGAATGGAGACTGTTACGAGAA
TCGATGCTTGTCTTATTTAAGAGATAAACTTTGATTTTACGAAAATAGGGAAAAGAAAAGATTTC
CACGCAAAAAAAAATCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTACAGTGCGTAATC
ACAAAATGAATCAAGATCAATACTAAAATCCATGTTTGGCTCATTTGAGGCACAAACTTAGACTT
TACAAAAACTGGTGA
Found at i:1255569 original size:42 final size:42
Alignment explanation
Indices: 1255514--1255632 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1255504 TTCTTCTCTC
* *
1255514 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1255556 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1255598 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1255633 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1255573 original size:12 final size:11
Alignment explanation
Indices: 1255547--1255622 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1255537 TCTATTATCT
*
1255547 CTCCTGTCTCTC
1 CTCCTATCTC-C
1255559 CTCCTATCATCC
1 CTCCTATC-TCC
1255571 CTCCTATCT--
1 CTCCTATCTCC
*
1255580 CTACTATCT--
1 CTCCTATCTCC
*
1255589 CTCCTGTCTCTC
1 CTCCTATCTC-C
1255601 CTCCTATCATCC
1 CTCCTATC-TCC
*
1255613 CTCCTCTCTC
1 CTCCTATCTC
1255623 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1255574 original size:24 final size:24
Alignment explanation
Indices: 1255538--1255623 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1255528 CCTCCTCTCT
* *
1255538 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
1255562 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
1255583 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
1255604 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
1255624 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:1255598 original size:18 final size:18
Alignment explanation
Indices: 1255529--1255599 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
1255519 CCTGTCATCC
* *
1255529 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
1255547 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
1255569 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
1255589 CTCCTGTCTCT
1 CTCCTGTCTCT
1255600 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:1258139 original size:475 final size:462
Alignment explanation
Indices: 1257252--1258208 Score: 1228
Period size: 475 Copynumber: 2.0 Consensus size: 462
1257242 TTTCATCAGG
* * *
1257252 AAAATAGGGAAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAAAATCATTTATACTAATGAGG
1 AAAATA-GGCAAAGAAAAGAATTCCACGCAAAAGAAAATCATCAAAATCATATATACTAATGAGG
* * * *
1257317 ACAATGTGTTTATAGTGCGTAAACACCAAATGAATGAAGATCAATACTAGAATCCTTGTTTGGCT
65 ACAATGTGCTTATAGTGCGTAAACACAAAATGAAAGAAGATCAATACTAGAATACTTGTTTGGCT
* * *
1257382 CATTTCAGGCGCGAACTTAACGGTGGGAAAAAAGCGTTTCTTGCAAAACATTAGCACCAATATCG
130 CATTTCAGGCACGAACTTAACGGTGGGAAAAAAGCCTTTCTTGCAAAACATAAGCACCAATATCG
* * ** * * *
1257447 TGTCTCCAAATGAGAAGGCTTTGTTTATGGAGCCTAATTGTGAAAAGAATGGAGAATAGTATGAG
195 TGTATCCAAATGAGAAGACTAAGTTTATGGAGCCTAATCGTGAAAAGAATGGAGAAGAGCATGAG
1257512 TATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCG
260 TATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCG
*
1257577 TTTAATGCCACACCAAAGCATCAATGTCTTATATCCTAATAAAAGGAATGTGTTTTAAGTTCAAA
325 TTTAATGCAACACCAAAGCATCAATGTCTTATATCCTAATAAAAGGAATGTGTTTTAAGTTCAAA
* *
1257642 ATCCTAAAAAGAATGGAGACTATTTCGAGAATTC-ATGCTTGTCTTATTTAAGGGATGAACTTTG
390 ATCCTAAAAAGAATGGAGACTATTACGAGAA-TCGATGCTTGTCTTATTTAAGGGAGGAACTTTG
*
1257706 -TTTTTAAGC
454 ATTTTT-AGA
*
1257715 AAAATAGGCAAAGAAAAGAATTCCACGCAAAAGAAAATCATCAATATCATATAT-CTTAATGAGG
1 AAAATAGGCAAAGAAAAGAATTCCACGCAAAAGAAAATCATCAAAATCATATATAC-TAATGAGG
* * * *
1257779 AGAATGTGCTTATAGTGCCG-AATCACAAAATGAAAGAAGATTATTACTAGAATACTTGTTTGGC
65 ACAATGTGCTTATAGTG-CGTAAACACAAAATGAAAGAAGATCAATACTAGAATACTTGTTTGGC
* * *
1257843 TCATTTGAGGCACGAACTTAGACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTTAAG-AAACC
129 TCATTTCAGGCACGAACTT--A----AC-------GGTGGGAAAAAAGCCTTTCTT--GCAAAAC
* *
1257907 A-AAGCACCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCGTGAAAAGAA
179 ATAAGCACCAATATCGTGTATCCAAATGAGAAGACTAAGTTTATGGAGCCTAATCGTGAAAAGAA
* *
1257971 TGGGGAAGAGCATGTGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAAC
244 TGGAGAAGAGCATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* ** * * *
1258036 GGTGGAAAGAAAAGCTTTTCTTGCAACACTAAAGCATCAATGTCTTGTATCCTAAT-GAAGGAAA
309 GGTGGAAAGAAAAGCGTTTAATGCAACACCAAAGCATCAATGTCTTATATCCTAATAAAAGG-AA
** ** * * *
1258100 TGTGTTTCT-AGTTCCCAATTTTGAAAATAATGGAGACTATTACGAGAATCGATTCTTGTCTTAT
373 TGTGTTT-TAAGTTCAAAATCCTAAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTAT
1258164 TTAAGGGAGGAACTTTGATTTTTAGA
437 TTAAGGGAGGAACTTTGATTTTTAGA
*
1258190 AAAATAAGGCAAGGAAAAG
1 AAAAT-AGGCAAAGAAAAG
1258209 TTTCCCACTC
Statistics
Matches: 425, Mismatches: 47, Indels: 31
0.84 0.09 0.06
Matches are distributed among these distances:
461 1 0.00
462 122 0.29
463 8 0.02
464 1 0.00
468 2 0.00
474 6 0.01
475 261 0.61
476 23 0.05
477 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (462 bp):
AAAATAGGCAAAGAAAAGAATTCCACGCAAAAGAAAATCATCAAAATCATATATACTAATGAGGA
CAATGTGCTTATAGTGCGTAAACACAAAATGAAAGAAGATCAATACTAGAATACTTGTTTGGCTC
ATTTCAGGCACGAACTTAACGGTGGGAAAAAAGCCTTTCTTGCAAAACATAAGCACCAATATCGT
GTATCCAAATGAGAAGACTAAGTTTATGGAGCCTAATCGTGAAAAGAATGGAGAAGAGCATGAGT
ATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCGT
TTAATGCAACACCAAAGCATCAATGTCTTATATCCTAATAAAAGGAATGTGTTTTAAGTTCAAAA
TCCTAAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGAGGAACTTTGAT
TTTTAGA
Found at i:1259488 original size:476 final size:476
Alignment explanation
Indices: 1258228--1264609 Score: 8067
Period size: 475 Copynumber: 13.4 Consensus size: 476
1258218 CAAATGAAAC
* * * *
1258228 TTTTGTAAAGTCTATGTTCATGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCACTC
1 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTC
* * * * *
1258293 ATTTTTTGATTAGGCACTGTGAACACATTCTCCTCACTAGGATAAATAATATTGATGATTTTCTT
66 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * * * *
1258358 TTGCGTGGAAATCTTTTCTTTGCCCCATTTTCCTTAAAATCAAAGTTCATCCCCTAAA-AAGACA
131 TTGCGTGAAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* ** * * *
1258422 AGTATAAATTCCCGTAACAATCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTCCCTTCA
196 AGCATCGATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTCCCTTCA
** * * *
1258487 TTAATATACATGACATCGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCTACCGTTTTTGATA
261 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATA
* * * * * * *
1258552 GAGTCAAAGTTTGTCTCTTTAATAAGACAAACATGAATACTCATAGTAATCCCCATTCCTCT-AT
326 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTATTCCCCATTCTTTTCA-
* * * * * * * * **
1258616 GGATTAGGTACCATAAACATAGTTTTCTCATTAGGATACTCGAAATTGATGTTTTGGTTTCGCAA
390 CGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
*
1258681 GAAAGGC-TTTTTCCTACCAAT
455 GAAAGGCTTTTTTCCCACCAAT
* * * * * * *
1258702 TTTTATAAAGTCTAAGTTTGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATTTTCATTC
1 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTC
* * * * *
1258767 ATTTTGTGACTAGGCACTATAAGCACATTCTCCTTAATAGGATAAATGATTTTGATGATTTTCTT
66 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * * * * * * **
1258832 TTACCT-AGAAATCTTTTCTTTG-TCGA-TTTCCTTATAATCAAAGTTCATCTATTATTAAATAA
131 TTGCGTGA-AAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATC---CCTTAAATAA
* * * * *
1258894 GACATGCATCGATTCTCATAACAGTC-CCATTCTTTTCAAGATTGAGAAGCAAAAACACATTCCC
192 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTCCC
* * * *
1258958 TTGATTAGGATAC-TAGACATTGATGCTTTGCTGTCACAAGGAAAGCTTTTCTTTCCACCGTTTT
257 TTCATTAGGATACAT-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT
* * *
1259022 TGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCGTTCTT
321 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTATTCCCCATTCTT
*
1259087 TTCACGATTAGGCACCATAAACTTAGTCTTCTCATTTGGATACACGATATTGGTGCTTTGGTTTC
386 TTCACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTC
* * *
1259152 TTAAGAAAGGATTTTTTTCGACCAAT
451 TTAAGAAAGGCTTTTTTCCCACCAAT
* * *
1259178 TTTTATAAAGTCTAAGTTCGTGCCTCAAATTAGCCAAACAAGGATTCTAGTATTGATCTTCAATC
1 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTC
** * * *
1259243 ATTTTGTGATTACACAAC-ATAAACATATTCTCATCTTTAGGATAAATGATATTGATGATTTTCT
66 ATTTTGTGATTAGGC-ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
*
1259307 TTTGTGTGAAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGAC
130 TTTGCGTGAAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* * * *
1259372 AAGCATCGATTCTCATAACAGTCTCCACTCTTTTTAGGATTAGGAACCTAAAACACATTACCTTC
195 AAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTCCCTTC
* * *
1259437 ATTAGGATACATGATATTGATGCTTTGGTGTCTCAAGAAAAGCTCTTCTTTCCACCGTTTTTGAT
260 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
* * * *
1259502 AGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-CATAGTAATCCCCTTTCTTTT-A
325 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTATTCCCCATTCTTTTCA
* * * * * * **
1259565 TGGATTAGGCAACATAAACATAGTTTTCTCACTAGGATACACGATA-TGGATACTTTGGTTTCGC
390 -CGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGG-TGCTTTGGTTTCTT
* *
1259629 AAGAAA-GCCTTTTTCCCTACCAAA
453 AAGAAAGGCTTTTTTCCC-ACCAAT
*
1259653 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATA-GATTCTAGTATTGATCTTCATT
1 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACA-AGGATTCTAGTATTGATCTTCATT
* * *
1259717 CATTTTGTGATTATGCACTATAAACACATTCTCCTCATTGGGATAAATGATATTGATGATTTTTT
65 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
* * * * * *
1259782 TTTGTGTGGAAATCTTTTCTATTCCCTATTTTACTTAAAATTAAAGTTCATCCATTAAATAAGAT
130 TTTGCGTGAAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* * * * * *
1259847 AAGCCTTGATTCTCGTAACAGTCTCTAGTCTTTTCGGGATTGGGAACCTAAAACACATTCCCTTC
195 AAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTCCCTTC
* * * *
1259912 ATTAGTATACATCACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCCACCCTTTTTGAT
260 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
* * ** *
1259977 AGAATCAAAGTTTGTCCCTTTAATGGGACAAACATGAATACACATACTCTTCCCCATTCTTTTCA
325 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTATTCCCCATTCTTTTCA
* * * * * *
1260042 CGATTAGGCACCATAAACTTTGTCTTCTCATTGGGATGCATGATATTGGTGCTATGGTTTCATAA
390 CGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
1260107 GAAAGGC-TTTTTCCCACCAAT
455 GAAAGGCTTTTTTCCCACCAAT
* * * *
1260128 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTC
1 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTC
* * * * * * * *
1260193 ATCTTGTCATTAGGCATTATAAGCATATTCTCCACATTAGGACAAATGATATTGATGATTCTTTT
66 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-T-TTTC
* * * *
1260258 TTTTGCATGGAAATAT-TTTTTTTTG-CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
129 TTTTGCGT-GAAA-ATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAA
* * * * * * * * * *
1260321 GACAAGAATCAAATCTCGTAATAGTC-GCATTCCTTTCAAGATTGGGATCCAAAAACACATTCCC
192 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTCCC
* * ** * * * *
1260385 TTTAGTAGGATACACAACATTCATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCGCCATTTTT
257 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
* ** * *
1260450 GATAGAATCAAAGTTTG-CTTCTTAAATAAGACAAACATAAATAGTCATACTAATCCCTATTCTT
322 GATAGAATCAAAGTTTGTC-TCTTAAATAAGACAAACATGAATACACATACTATTCCCCATTCTT
** * * * * **
1260514 TTCGGGATTCA-GCACCATAAACATAGTCTTCTCATAAGTATGCACGATATTAATGCTTTGGTTT
386 TTCACGATT-AGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTT
* * *
1260578 -TGCT-AGAAAGGCTTTCTTCTCATCAAT
450 CT--TAAGAAAGGCTTTTTTCCCACCAAT
* *
1260605 TTTTGTAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCATTC
1 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTC
* * *
1260670 ATTTTTTGATTAGGCACTGTGAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
66 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * * * * * *
1260735 TTGCATGGAAATCATTTCTTTGCCCTATTTTTCGTAAAACCAAAGTTCATCCCTTAAA-AAGACA
131 TTGCGTGAAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* * * * * * *
1260799 AGCTTCGATTTTCATAATAGTCTCCATTTTTTTCAAGATTGGGAACCAAAAAGACATTCCCTTCA
196 AGCATCGATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTCCCTTCA
* * * *
1260864 TTAGGATACTTGACATTGATCCTTTGGTGTCGCTAGAAAAGCTTTTCTTTTCACC-TTTTATGAT
261 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT-TGAT
* *
1260928 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACAGACTCTTCCCCATTCTTTTCA
325 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTATTCCCCATTCTTTTCA
1260993 CGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
390 CGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
*
1261058 GAAAGGCTTTTTTCCCACTAAT
455 GAAAGGCTTTTTTCCCACCAAT
* * * * * *
1261080 TTTTGGAAAATCTAAGTTCGTGCCTCAAATGAGACAAACATGCATTCTAGTAATGATCTTCATTC
1 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTC
* *
1261145 ATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGAT-ATTTTTTT
66 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * * * *
1261209 TTGCATGAAAATATTTTCTATGCCCTATTTTACATAAAATCAAAGTTTATCCCTTAAATAAGATA
131 TTGCGTGAAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* * * * * * * *
1261274 AGCATTGATTCTCGTAACGGTCTCCATTCTTTTCGGGATTAGGAACCTGAAACGCATTCCCTTCG
196 AGCATCGATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTCCCTTCA
* * * *
1261339 TTAGGATACATGACATTGATCCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCATCATTTTTGATA
261 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATA
* * * ** * * * *
1261404 GAGTCAAAGTTTGTCTCCTAAATACGACAAACACAAATAGACAGACTTTTCTCCATTCTTTTCAC
326 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTATTCCCCATTCTTTTCAC
* * *
1261469 GATTAGGCACCATAAACTTAGTCTTCTCTTTAGGATACACGACATTGGTGCTTTGTTTTCTTAAG
391 GATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAG
*
1261534 -AAGGCTTTTTTACCCATCAAT
456 AAAGGCTTTTTT-CCCACCAAT
*
1261555 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTTATCTTCATTC
1 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTC
* *
1261620 ATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTCTT
66 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * *
1261685 TTGCGTGGAAATCTTTTCTATGCCTTATTTTACTTAAAATCAAAGTTTATCCCTTAAATAAGACA
131 TTGCGTGAAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* * *
1261750 AGCATCAATTCTCATAATAGTCTCCATTC-TTTCTAGGATTGGCAACCTAAAACACATTCCCTTC
196 AGCATCGATTCTCATAACAGTCTCCATTCTTTTC-AGGATTGGGAACCTAAAACACATTCCCTTC
* * * * *
1261814 ATTAGGATACGTGACGTTGATGCTTTAGTGTCGC-AGAAAAGCTTTTCTTTCCATCGTTTTTTAT
260 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
** * * * * *
1261878 AGAGCCAAAGTTTGTCTCCTAAATAAGACAAACATGAATGCACATACTCTTCCCCATTATTTGCA
325 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTATTCCCCATTCTTTTCA
*
1261943 CGATTAGCCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
390 CGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
1262008 GAAAGGCTTTTTTCCCACCAAT
455 GAAAGGCTTTTTTCCCACCAAT
* * * *
1262030 TTTTGTAAAGTCTAAATTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAATAATCTTCATTG
1 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTC
* *
1262095 ATTTCGTGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TT
66 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* *
1262159 TTGCATGAAAATCTTTTCAATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAA-AAGACA
131 TTGCGTGAAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* * * * *
1262223 AGCATCAATTCT-AGTAACAATCTCCATTCTTTTTAGGATTGGGAACCTAGAAAGACATCCCCTT
196 AGCATCGATTCTCA-TAACAGTCTCCATTCTTTTCAGGATTGGGAACCTA-AAACACATTCCCTT
*
1262287 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGCTTTTGA
259 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
* * * * * *
1262352 TAGAATCAAAGTTTGCCTCTTAAATAAAACAAACATGAATAGACATACTAATCCCCATTTTTTTT
324 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTATTCCCCATTCTTTTC
* * ** * * * * * * *
1262417 AGGATTAGGCACCCTAAACGCAATATTCTCGTAAGGATGCATGATATTGATGCTTTGGTTT-TGC
389 ACGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCT--
* *
1262481 T-AGAAAGGCTTTCTTCCTACCAAT
452 TAAGAAAGGCTTTTTTCCCACCAAT
* ** * * *
1262505 TTTTGTAAAGTCTAGGTTCGTGCCTCAAAAAAGCAAAATAGGGATTCTAGTATTGATCTTCATTC
1 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTC
* * *
1262570 ATTTTATGATTAGGCACCATGAACACATTCTCCTC-TATAGGATAAATGATATTGATGATTTTCT
66 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCAT-TAGGATAAATGATATTGATGATTTTCT
* * * *
1262634 TTTGCGTGATAATCTTTTCTTTACCCTATTTT-CTTAAAATCAAAGTTCATCCCTCAAATAAGAC
130 TTTGCGTGAAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* * * * * * *
1262698 AAACATCGATTCTCATAATAGTCTCCATTCTTTTCTGGATTGGGATCCAAAAACACATACCTTTC
195 AAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTCCCTTC
* *
1262763 ATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGAT
260 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
* * * *
1262828 AGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGAATACACATGCTCTTCCCTATTCTTTTCA
325 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTATTCCCCATTCTTTTCA
* * *
1262893 TGATTAGCCACCATAAACTTAGTCTTCTCATTAGGATACATGATATTGGTGCTTTGGTTTCTTAA
390 CGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
* *
1262958 GAAAGGCTTTTTCCCCACCAGT
455 GAAAGGCTTTTTTCCCACCAAT
* * * * *
1262980 TTTTGTAAAGTCTAGGTTCGTGCCTCAACTGAGCCAAACAAGGACTCTAGTTTTTATCTTCATTC
1 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTC
* * * *
1263045 ATTTTGTGATTACGCGCTATAAACACATTCTCCTCATTAGGATAAATGATGTCGATGATTTTCTT
66 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
** * *
1263110 TTGCGTGAAAATCTTTTCTATTTCCTATTTTACTTAAAATCAAAATTCATCCCCTAAATAAGACA
131 TTGCGTGAAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* * * * *
1263175 AGCATCGATTCTCGTAAGAGTCTCCATTCTTTTCTGGATTAGGAACCTAAAAGACATTCCCTTCA
196 AGCATCGATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTCCCTTCA
* * *
1263240 TTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCTATCGTTTTTGATA
261 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATA
* * * *
1263305 GAGTCAAAGTTTGTCTCCTAAATAAGACAAACATTG-ATACACATACTCTTCCCCATTCTTTTCC
326 GAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATACACATACTATTCCCCATTCTTTTCA
* * *
1263369 CAACTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTTAA
390 CGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAA
1263434 GAAAGGCTTTTTTCCCACCAAT
455 GAAAGGCTTTTTTCCCACCAAT
* * * * *
1263456 TTCTGTAAAGTCTAAGTCCGTGCCTCAAATGAGCTAGACAAGGATTCTAGTATTTAT-TTCATTC
1 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTC
* * *
1263520 ATTTTGTGATTACGCACTATAAACACATTTTTCTCATTAGGATAAATGATATTGATGATTTTCTT
66 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * *
1263585 TTGTGTGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTTATCCCTT-AATAAGACA
131 TTGCGTGAAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACA
*
1263649 AGCATCGATTCGCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTCCCTTCA
196 AGCATCGATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTCCCTTCA
* * *
1263714 TTAGGATACATGACATTGATGCTTTGGTGTGGCAAGAAAAGCTTTTCTTTCCATCATTTTTGATA
261 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATA
* * * * *
1263779 GAGTCAAAGTTTGTCTCTTAAAGAAGACAAACATGAATACACATACTCTTCCCCATTCTTTGCAT
326 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTATTCCCCATTCTTTTCAC
* * *
1263844 GATTAGTCACCATAAACATAGTCTTTTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAG
391 GATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAG
*
1263909 AAATGCTTTTTTCCCACCAAT
456 AAAGGCTTTTTTCCCACCAAT
* * * * * *
1263930 TTTTGTAAAGTCTAAATTCGTGCCTCAAATGAGCTAAACAAGGATTCTAGTAATAATCTTTATTG
1 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTC
* *
1263995 ATTTTGTGATTACGCACTATAAACATATTCGT-CTCATTAGGATAAATGATATTGATGATTTT-T
66 ATTTTGTGATTAGGCACTATAAACACATTC-TCCTCATTAGGATAAATGATATTGATGATTTTCT
* * *
1264058 TCTTGCGTAAAAAATCTTTTCAATGCCCTATTTTACATAAAATCAAAGTTCATCCCTTAAA-AAG
130 T-TTGCGT-GAAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAG
* * *
1264122 ACAAGCATCAATTCT-AGTAACAATCTCCATTCTTTTCAGGATTGGGAGCCTAAAACACATTCCC
193 ACAAGCATCGATTCTCA-TAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTCCC
** * * * *
1264186 TTTGTTAGGATACATGACATTGATGCTTTGGTGTTGCAACAAAAGCTTTTCTTTCCACCGCTATT
257 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
* * ** * *
1264251 GATAGAATCAAAGTTTGCCTCTTAAATAAAACAAACATGAATAGTCATACTAATCCCTATTCTTT
322 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTATTCCCCATTCTTT
* * * * * * * *
1264316 TCAGGATTAGGCTCCATAAA-TGCAGTTTTCTCATAAGGATGCACGATATTGATGATTTGGTTT-
387 TCACGATTAGGCACCATAAACT-TAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTC
*
1264379 TGCT-AGAAAGGC-TTTCTCCCTACCAAT
451 T--TAAGAAAGGCTTTTTTCCC-ACCAAT
* * * * * *
1264406 TTTTGTAAAGTCTAAGTTTGTGCGTCAAATGGGCAAAACAAGGGTTCTAGTATTGCTCTTCATTC
1 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTC
* * * ** * *
1264471 ACTTTATGATTAGGCACTATGAACACATTCTCCTTGTTACGATAAATGATATTGATGGTTTT-TT
66 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * * *
1264535 TT--ATGGAAATCTTTTCTTTGCCCTATTTT-CTTTAAAATCAAAGTTCATCCCTTAAATGAGAC
131 TTGCGTGAAAATCTTTTCTATGCCCTATTTTAC-TTAAAATCAAAGTTCATCCCTTAAATAAGAC
*
1264597 AAACATCGATTCT
195 AAGCATCGATTCT
1264610 GATGACAACC
Statistics
Matches: 5130, Mismatches: 702, Indels: 153
0.86 0.12 0.03
Matches are distributed among these distances:
471 1 0.00
472 68 0.01
473 67 0.01
474 673 0.13
475 2566 0.50
476 1519 0.30
477 204 0.04
478 30 0.01
479 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (476 bp):
TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTC
ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
TTGCGTGAAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACA
AGCATCGATTCTCATAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTCCCTTCA
TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATA
GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTATTCCCCATTCTTTTCAC
GATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAG
AAAGGCTTTTTTCCCACCAAT
Found at i:1261160 original size:158 final size:158
Alignment explanation
Indices: 1258946--1264238 Score: 1037
Period size: 158 Copynumber: 33.4 Consensus size: 158
1258936 TGAGAAGCAA
* * * * ** *
1258946 AAACACATTC-CCTTGATTAGGATAC-TAGACATTGATGCTTTGCTGTCACAAGGAAAGCTTTTC
1 AAACACATTCTCC-TCATTAGGATACAT-GATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTC
* *** * * * *
1259009 TTTCCACCGTTTTT-GATAGAATCAAAGTTCGT-CTCTTAAATAAGACAAACATGAATACTCA-T
64 TTCCCATAATTTTTGGA-A-AATCAAAGTTCGTGC-CTCAAATGAGACAAACATGCATTCT-AGT
* * * **
1259071 ACT-ATTCCCCGTTCTTTTCACGATTAGGCACCAT
125 AATGA-TCTCCATTCTTTTCGTGATTAGGCACCAT
** * * * * * * * *
1259105 AAACTTAGTCTTCTCATTTGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGATTTTTTT
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTCTT
** * * * * * * *
1259170 CGACC--AATTTTTATAAAGTCTAAGTTCGTGCCTCAAATTAGCCAAACAAGGATTCTAGTATTG
66 C--CCATAATTTTTGGAAAATCAAAGTTCGTGCCTCAAATGAGACAAACATGCATTCTAGTAATG
* * ** *
1259233 ATCTTCAATCATTTT-GTGATTACACAACAT
129 ATCTCCATTC-TTTTCGTGATTAGGCACCAT
* * * * * ** ** *
1259263 AAACATATTCTCATCTTTAGGATAAATGATATTGATGATTTTCTTT-TGTGTGAAAATCTTTTCT
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCT-TAAGAAAAGCTTTTCT
* * * * * *
1259327 ATGCCC-T-ATTTTACT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT-CGATTCTCA-
65 -T-CCCATAATTTT--TGGAAAATCAAAGTTCGTGCCTCAAATGAGACAAACATGC-ATTCT-AG
* * * *
1259387 TAA-CAGTCTCCACTCTTTTTAG-GATTAGGAACC-T
124 TAATGA-TCTCCATTC-TTTTCGTGATTAGGCACCAT
* * * *
1259421 AAAACACATTAC-CTTCATTAGGATACATGATATTGATGCTTTGGTGTCTCAAGAAAAGCTCTTC
1 -AAACACATT-CTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTC
* *** * * * * * * *
1259485 TTTCCACCGTTTTT-GATAGAGTCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATACCA-TA
64 TTCCCATAATTTTTGGA-A-AATCAAAGTTCGTGC-CTCAAATGAGACAAACATGCATTCTAGTA
* * * * * *
1259547 GTAATCCCCTTTCTTTT-ATGGATTAGGCAACAT
126 ATGATCTCCATTCTTTTCGT-GATTAGGCACCAT
* * * * * * ** *
1259580 AAACATAGTT-TTCTCACTAGGATACACGATATGGATACTTTGGTTTCGCAAG-AAAGCCTTT-T
1 AAACACA-TTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTCT
* * * * * *
1259642 TCCCTACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAG-ATTCTAGTAT
65 TCCC-A-TAATTTTTGGAAAATCAAAGTTCGTGCCTCAAATGAGACAAACAT-GCATTCTAGTAA
* * *
1259706 TGATCTTCATTCATTTT-GTGATTATGCACTAT
127 TGATCTCCATTC-TTTTCGTGATTAGGCACCAT
* * * * * ** * *
1259738 AAACACATTCTCCTCATTGGGATAAATGATATTGATGATTT-TTTTTTGTGTGGAAATCTTTTCT
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCT-TAAGAAAAGCTTTTC-
* * * * * * * * *
1259802 ATTCCC-T-ATTTTACT-TAAAATTAAAGTTCAT-CCATTAAATAAGATAAGCCTTG-ATTCTCG
64 -TTCCCATAATTTT--TGGAAAATCAAAGTTCGTGCC-TCAAATGAGACAA-ACATGCATTCTAG
* * * * * *
1259862 TAA-CAGTCTCTAGTCTTTTCGGGATTGGGAACC-T
124 TAATGA-TCTCCATTCTTTTCGTGATTAGGCACCAT
* * * * ** *
1259896 AAAACACATTC-CCTTCATTAGTATACATCACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCC
1 -AAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTC
* *** * * ** * * * *
1259960 TTTCCACCCTTTTT-GATAGAATCAAAGTTTGTCCCTTTAATGGGACAAACATGAATAC-ACATA
64 TTCCCATAATTTTTGGA-A-AATCAAAGTTCGTGCCTCAAATGAGACAAACATGCATTCTA-GTA
* ** * **
1260023 CTCTTCCCCATTCTTTTCACGATTAGGCACCAT
126 ATGATCTCCATTCTTTTCGTGATTAGGCACCAT
** * * * * * * *
1260056 AAAC-TTTGTCTTCTCATTGGGATGCATGATATTGGTGCTATGGTTTCATAAGAAAGGC-TTT-T
1 AAACACAT-TCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTCT
* * * * * *
1260118 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACGAACATGGATTCTAGTAATG
65 TCCCA-TAATTTTTGGAAAATCAAAGTTCGTGCCTCAAATGAGACAAACATGCATTCTAGTAATG
* * * **
1260183 ATCTTCATTCATCTT-GTCATTAGGCATTAT
129 ATCTCCATTC-TTTTCGTGATTAGGCACCAT
* * * * * * * * * **
1260213 AAGCATATTCTCCACATTAGGACAAATGATATTGATGATTCT-TTTTTTTGCATGGAAATATTTT
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTT-TGGTTTCTT--A-AGAAA-AGCTT
* * * * * * * *
1260277 TTTTTGCC-T-ATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGA-AT-CAAATCT
61 TTCTTCCCATAATTTT--TGGAAAATCAAAGTTCGTGCCTCAAATGAGACAA-ACATGC-ATTCT
* * * ** * *
1260337 CGTAAT-AGTC-GCATTCCTTTCAAGATT-GGGATCCAA
122 AGTAATGA-TCTCCATTCTTTTCGTGATTAGGCA-CCAT
* * ** * * * **
1260373 AAACACATTC-CCTTTAGTAGGATACACAACATTCATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
1 AAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTCT
** *** * * **
1260437 TTTCGCCATTTTT-GATAGAATCAAAGTT--TGCTTCTTAAATAAGACAAACATAAATAGTC-A-
65 TCCCATAATTTTTGGA-A-AATCAAAGTTCGTGC--CTCAAATGAGACAAACATGCAT--TCTAG
* * *
1260497 TACTAATC-CCTATTCTTTTCGGGATTCA-GCACCAT
124 TAATGATCTCC-ATTCTTTTCGTGATT-AGGCACCAT
* * * * * * * * *
1260532 AAACATAGTCTTCTCATAAGTATGCACGATATTAATGCTTTGGTTT-TGCT-AGAAAGGC-TTTC
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCT--TAAGAAAAGCTTTTC
* * * * * * * *
1260594 TTCTCATCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATT
64 TTCCCAT-AATTTTTGGAAAATCAAAGTTCGTGCCTCAAATGAGACAAACATGCATTCTAGTAAT
* * **
1260659 GATCTTCATTCATTTT-TTGATTAGGCACTGT
128 GATCTCCATTC-TTTTCGTGATTAGGCACCAT
* * * ** * * * * *
1260690 GAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT-TGCATGGAAATCATTTCT
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCT-TAAGAAAAGCTTTTC-
* * * * * * * * *
1260754 TTGCCC-T-ATTTTTCGTAAAACCAAAGTTCATCCCTTAAA-AAGACAAGC-TTCGATTTTCA-T
64 TT-CCCATAATTTTT-GGAAAATCAAAGTTCGTGCCTCAAATGAGACAAACATGC-ATTCT-AGT
* ** * * *
1260814 AAT-AGTCTCCATTTTTTTCAAGATTGGGAACCAA
125 AATGA-TCTCCATTCTTTTCGTGATTAGGCACCAT
* * * * * *
1260848 AAAGACATTC-CCTTCATTAGGATACTTGACATTGATCCTTTGGTGTCGCT-AGAAAAGCTTTTC
1 AAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTC-TTAAGAAAAGCTTTTC
** ** * * * * * *
1260911 TTTTCA-CCTTTTAT-GATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATACACAG
64 TTCCCATAATTTT-TGGA-A-AATCAAAGTTCGTGC-CTCAAATGAGACAAACATGCATTC-TAG
* ** * **
1260973 -ACTCTTCCCCATTCTTTTCACGATTAGGCACCAT
124 TAATGATCTCCATTCTTTTCGTGATTAGGCACCAT
** * * * * *
1261007 AAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTT-TT
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTCTT
*
1261071 CCCACTAATTTTTGGAAAATCTAAGTTCGTGCCTCAAATGAGACAAACATGCATTCTAGTAATGA
66 CCCA-TAATTTTTGGAAAATCAAAGTTCGTGCCTCAAATGAGACAAACATGCATTCTAGTAATGA
* *
1261136 TCTTCATTCATTTT-GTGATTAGGCACTAT
130 TCTCCATTC-TTTTCGTGATTAGGCACCAT
* * * * * **
1261165 AAGCACATTCTCCTCATTAGGATAAATGATATTGAT-ATTT--TTTTTTGCATGAAAATATTTTC
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCTT--AAGAAAAGCTTTTC
*** ** * * * * * *
1261227 TATGCCC-T-ATTTTACATAAAATCAAAGTTTATCCCTTAAATAAGATAAGCATTG-ATTCTCGT
64 T-T-CCCATAATTTT-TGGAAAATCAAAGTTCGTGCCTCAAATGAGACAAACA-TGCATTCTAGT
* * * *
1261289 AACGGTCTCCATTCTTTTCGGGATTAGGAACC-T
125 AATGATCTCCATTCTTTTCGTGATTAGGCACCAT
* * * *
1261322 GAAACGCATTC-CCTTCGTTAGGATACATGACATTGATCCTTTGGTGTTGC--AAGAAAAGCTTT
1 -AAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGT-TT-CTTAAGAAAAGCTTT
* * * * * **
1261384 TCTTTCCATCATTTTT-GATAGAGTCAAAGTTTGTCTCCT-AAAT-ACGACAAACA--CA-AATA
62 TCTTCCCATAATTTTTGGA-A-AATCAAAGTTCGT-GCCTCAAATGA-GACAAACATGCATTCTA
* ** **
1261443 GACAGACTTTTCTCCATTCTTTTCACGATTAGGCACCAT
123 G-TA-A-TGATCTCCATTCTTTTCGTGATTAGGCACCAT
** * * * * * * * *
1261482 AAACTTAGTCTTCTCTTTAGGATACACGACATTGGTGCTTTGTTTTCTTAAG-AAGGCTTTT-TT
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTCTT
* * * * * * * *
1261545 ACCCATCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTT
66 -CCCAT-AATTTTTGGAAAATCAAAGTTCGTGCCTCAAATGAGACAAACATGCATTCTAGTAATG
* * *
1261610 ATCTTCATTCATTTT-GTGATTACGCACTAT
129 ATCTCCATTC-TTTTCGTGATTAGGCACCAT
* * * ** * * *
1261640 AAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTCTTTTGCGT--GGAAATCTTTTC
1 AAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTTT-CTTAAGAAAAGCTTTTC
* * * ** * * * *
1261703 TATGCC-TTATTTTACT-TAAAATCAAAGTTTATCCCTTAAATAAGACAAGCAT-CAATTCTCA-
64 T-TCCCATAATTTT--TGGAAAATCAAAGTTCGTGCCTCAAATGAGACAAACATGC-ATTCT-AG
*
1261764 TAAT-AGTCTCCATTCTTTCTAG-GATT-GGCAACC-T
124 TAATGA-TCTCCATTCTTT-TCGTGATTAGGC-ACCAT
* ** * * **
1261798 AAAACACATTC-CCTTCATTAGGATACGTGACGTTGATGCTTTAGTGTC-GCAGAAAAGCTTTTC
1 -AAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTC
* ** * ** * * * * * *
1261861 TTTCCATCGTTTTT-TATAGAGCCAAAGTTTGTCTCCT-AAATAAGACAAACATGAATGC-ACAT
64 TTCCCATAATTTTTGGA-A-AATCAAAGTTCGT-GCCTCAAATGAGACAAACATGCATTCTA-GT
* ** * * * ** *
1261923 ACTCTTCCCCATTATTTGCACGATTAGCCACCAT
125 AATGATCTCCATTCTTTTCGTGATTAGGCACCAT
** * * * * *
1261957 AAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTT-TT
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTCTT
* * * * * * *
1262021 CCCACCAATTTTTGTAAAGTCTAAA-TTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAATA
66 CCCA-TAATTTTTGGAAAATC-AAAGTTCGTGCCTCAAATGAGACAAACATGCATTCTAGTAATG
* ** * *
1262085 ATCTTCATTGATTTCGTGATTACGCACTAT
129 ATCTCCATTCTTTTCGTGATTAGGCACCAT
* * * *
1262115 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT--TTT-TTGCATGAAAATCTTTTC
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCTT--AAGAAAAGCTTTTC
* * * * * * *
1262177 AATGCCC-T-ATTTTACT-TAAAATCAAAGTTCATCCCTTAAA-AAGACAAGCAT-CAATTCTAG
64 --TTCCCATAATTTT--TGGAAAATCAAAGTTCGTGCCTCAAATGAGACAAACATGC-ATTCTAG
** * * * *
1262237 TAACAATCTCCATTCTTTTTAG-GATTGGGAACCTAG
124 TAATGATCTCCATTC-TTTTCGTGATTAGGCACC-AT
* * * * **
1262273 AAAGACA-TCCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
1 AAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTCT
* **** * * * *
1262337 TTCCACCGCTTTT-GATAGAATCAAAGTT--TGCCTCTTAAATAAAACAAACATGAATAGAC-A-
65 TCCCATAATTTTTGGA-A-AATCAAAGTTCGTGCCTC--AAATGAGACAAACATGCAT--TCTAG
* * * * * *
1262397 TACTAATCCCCATTTTTTTTAG-GATTAGGCACCCT
124 TAATGATCTCCA-TTCTTTTCGTGATTAGGCACCAT
* * * * * * * *
1262432 AAACGCAATATTCTCGTAAGGATGCATGATATTGATGCTTTGGTTT-TGCT-AGAAAGGC-TTTC
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCT--TAAGAAAAGCTTTTC
* * * * * * ** *
1262494 TTCCTACCAATTTTTGTAAAGTCTAGGTTCGTGCCTCAAAAAAG-CAAA-ATAGGGATTCTAGTA
64 TTCCCA-TAATTTTTGGAAAATCAAAGTTCGTGCCTCAAATGAGACAAACAT--GCATTCTAGTA
* * *
1262557 TTGATCTTCATTCATTTT-ATGATTAGGCACCAT
126 ATGATCTCCATTC-TTTTCGTGATTAGGCACCAT
* * * ** * * *
1262590 GAACACATTCTCCTC-TATAGGATAAATGATATTGATGATTTTCTTTTGCGT--GATAATCTTTT
1 AAACACATTCTCCTCAT-TAGGATACATGATATTGATG-CTTTGGTTT-CTTAAGAAAAGCTTTT
* * * *
1262652 CTTTACCC-T-ATTTTCT-TAAAATCAAAGTTCATCCCTCAAATAAGACAAACAT-CGATTCTCA
63 C-TT-CCCATAATTTT-TGGAAAATCAAAGTTCGTGCCTCAAATGAGACAAACATGC-ATTCT-A
* *
1262713 -TAAT-AGTCTCCATTCTTTTC-TGGATT-GGGATCCAA
123 GTAATGA-TCTCCATTCTTTTCGT-GATTAGGCA-CCAT
* * * * * **
1262748 AAACACATAC-CTTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
1 AAACACATTCTC-CTCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTCT
* * * * * * * * *
1262812 TTCCACT-GTTTTT-GATAGAATCAAAGTTTGT-CTTTTAAATAAGACAAACATGAATAC-A--C
65 TCCCA-TAATTTTTGGA-A-AATCAAAGTTCGTGC-CTCAAATGAGACAAACATGCATTCTAGTA
* * *
1262871 ATGCTCTTCCCTATTCTTTTCATGATTAGCCACCAT
126 ATGATC-T-CC-ATTCTTTTCGTGATTAGGCACCAT
** * * * * *
1262907 AAACTTAGTCTTCTCATTAGGATACATGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTT-TC
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTCTT
* * * * * * * * * * * ** *
1262971 CCCACCAGTTTTTGTAAAGTCTAGGTTCGTGCCTCAACTGAGCCAAACAAGGACTCTAGTTTTTA
66 CCCA-TAATTTTTGGAAAATCAAAGTTCGTGCCTCAAATGAGACAAACATGCATTCTAGTAATGA
* * * *
1263036 TCTTCATTCATTTT-GTGATTACGCGCTAT
130 TCTCCATTC-TTTTCGTGATTAGGCACCAT
* * * * ** * *
1263065 AAACACATTCTCCTCATTAGGATAAATGATGTCGATGATTTTCTTTTGCGT--GAAAATCTTTTC
1 AAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTTT-CTTAAGAAAAGCTTTTC
* * * * * * * *
1263128 TATTTCC-T-ATTTTACT-TAAAATCAAAATTCAT-CCCCTAAATAAGACAAGCAT-CGATTCTC
64 --TTCCCATAATTTT--TGGAAAATCAAAGTTCGTGCCTC-AAATGAGACAAACATGC-ATTCTA
*
1263188 GTAA-GAGTCTCCATTCTTTTC-TGGATTAGGAACC-T
123 GTAATGA-TCTCCATTCTTTTCGT-GATTAGGCACCAT
* * * **
1263223 AAAAGACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
1 -AAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTC
* * ** * * * * * *
1263287 TTTCTATCGTTTTT-GATAGAGTCAAAGTTTGTCTCCT-AAATAAGACAAACATTG-ATAC-ACA
64 TTCCCATAATTTTTGGA-A-AATCAAAGTTCGT-GCCTCAAATGAGACAAACA-TGCATTCTA-G
* ** * *** *
1263348 TACTCTTCCCCATTCTTTTCCCAACTAGGCACCAT
124 TAATGATCTCCATTCTTTTCGTGATTAGGCACCAT
** * * * *
1263383 AAACTTAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTTAAGAAAGGCTTTT-TT
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTCTT
* * * * * * * * * * *
1263447 CCCACCAATTTCTGTAAAGTCTAAGTCCGTGCCTCAAATGAG-CTAGACAAGGATTCTAGTATTT
66 CCCA-TAATTTTTGGAAAATCAAAGTTCGTGCCTCAAATGAGAC-AAACATGCATTCTAGTAATG
* * *
1263511 AT-TTCATTCATTTT-GTGATTACGCACTAT
129 ATCTCCATTC-TTTTCGTGATTAGGCACCAT
* * * * ** ** * *
1263540 AAACACATTTTTCTCATTAGGATAAATGATATTGATGATTTTCTTT-TGTGTGGAAATCTTTTCT
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCT-TAAGAAAAGCTTTTCT
* ** * * * * *
1263604 ATGCCC-T-ATTTTACT-TAAAATCAAAGTTTATCCCT-TAATAAGACAAGCAT-CGATTCGCA-
65 -T-CCCATAATTTT--TGGAAAATCAAAGTTCGTGCCTCAAATGAGACAAACATGC-ATTC-TAG
* * *
1263663 TAA-CAGTCTCCATTCTTTTCAG-GATTGGGAACC-T
124 TAATGA-TCTCCATTCTTTTC-GTGATTAGGCACCAT
* * ***
1263697 AAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTGGCAAGAAAAGCTTTTC
1 -AAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTC
* * * * * * * *
1263761 TTTCCATCATTTTT-GATAGAGTCAAAGTTTGT-CTCTTAAA-GAAGACAAACATGAATAC-ACA
64 TTCCCATAATTTTTGGA-A-AATCAAAGTTCGTGC-CTCAAATG-AGACAAACATGCATTCTA-G
* ** * * * *
1263822 TACTCTTCCCCATTCTTTGCATGATTAGTCACCAT
124 TAATGATCTCCATTCTTTTCGTGATTAGGCACCAT
* * ** * * *
1263857 AAACATAGTCTTTTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAATGCTTTT-TT
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTCTT
* * * * *
1263921 CCCACCAATTTTTGTAAAGTCTAAA-TTCGTGCCTCAAATGAG-CTAAACAAGGATTCTAGTAAT
66 CCCA-TAATTTTTGGAAAATC-AAAGTTCGTGCCTCAAATGAGAC-AAACATGCATTCTAGTAAT
* ** * * *
1263984 AATCTTTATTGATTTT-GTGATTACGCACTAT
128 GATCTCCATT-CTTTTCGTGATTAGGCACCAT
* * * ** * *
1264015 AAACATATTCGT-CTCATTAGGATAAATGATATTGATGATTTTTTCTTGCGTAA-AAAATCTTTT
1 AAACACATTC-TCCTCATTAGGATACATGATATTGATGCTTTGGT-TT-CTTAAGAAAAGCTTTT
* *** * * * * *
1264078 CAATGCCC-T-ATTTTACATAAAATCAAAGTTCATCCCTTAAA-AAGACAAGCAT-CAATTCTAG
63 C--TTCCCATAATTTT-TGGAAAATCAAAGTTCGTGCCTCAAATGAGACAAACATGC-ATTCTAG
** *
1264139 TAACAATCTCCATTCTTTTCAG-GATT-GGGAGCC-T
124 TAATGATCTCCATTCTTTTC-GTGATTAGGCA-CCAT
** * *
1264173 AAAACACATTC-CCTTTGTTAGGATACATGACATTGATGCTTTGGTGTTGC--AACAAAAGCTTT
1 -AAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGT-TT-CTTAAGAAAAGCTTT
1264235 TCTT
62 TCTT
1264239 TCCACCGCTA
Statistics
Matches: 3631, Mismatches: 1115, Indels: 779
0.66 0.20 0.14
Matches are distributed among these distances:
155 7 0.00
156 47 0.01
157 411 0.11
158 1494 0.41
159 1392 0.38
160 199 0.05
161 60 0.02
162 17 0.00
163 4 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (158 bp):
AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTCTT
CCCATAATTTTTGGAAAATCAAAGTTCGTGCCTCAAATGAGACAAACATGCATTCTAGTAATGAT
CTCCATTCTTTTCGTGATTAGGCACCAT
Found at i:1266379 original size:477 final size:475
Alignment explanation
Indices: 1265303--1268058 Score: 2777
Period size: 477 Copynumber: 5.7 Consensus size: 475
1265293 TTCTCATCAA
* * * *
1265303 ATTCTCAAAATAGTCTCCATTCTTTTCTAGATTGGGAACCAAAAATACATTCTCTTCATTAGGAT
1 ATTCTCATAATAATCTCCATTCTTTTCTAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* ** ** * *
1265368 AAAAGATGTTGATGCTTTGGTGTTGCGAGAAAAGTTTTTCTTTCCACCGTTTTTGATAGAATCAA
66 ACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* * * *
1265433 AGTTTTTCTCTTAAATAAGACAAACATGAATACACATGCTCTTCCCCATTCTTTTCATGATTAAC
131 AGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCAAGATTAGC
*
1265498 CACCATAAACTTAGTCTTCTCATTAAGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCT
196 CACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCT
* * * *
1265563 TTTTGCCCACCAATTTTTGTAAAGCCTAAGTTTGTGCCTCAAATAAGCCAAACAAGGATTCTAGT
261 TTTT-CCCACCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAAATGAGCCAAACAAGGATTCTAGT
** ** * * *
1265628 AAGAATCTTCATTCATTTCATGATTATGCACTATAAACACATTCTCCTCATTAGCATAAAAGATA
325 ATTAATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * * * *
1265693 CTGATGATTTTTTTTTTTGCGTGGAAATCTTTTCTATGCCTTATTTTACTTAAAATTAAAATTCA
390 TTGATGA--TTTTCTTTTGCGTGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCA
* ** *
1265758 TCCCCTAAATAAGACAAGCATCA
453 TCCCTTAAATAAGACAAAAATCG
* **
1265781 ATTCT-AGTAACAATCTCCATTCTTTTC-AGGATTGGGAACCTTAAACACATTCCCTTCATTAGG
1 ATTCTCA-TAATAATCTCCATTCTTTTCTA-GATTGGGAACCAAAAACACATTCCCTTCATTAGG
* * * * *
1265844 ATACATGACATTGATGCTTTGGTGTTATAAGAAAAGCTATTCTTTCCACCGCTTTTGATAGAATC
64 ATACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC
* * ** ** * *
1265909 AAAGTTTGCCTCTTAAATAAAACAAACATGAATAGTCATACTAATCTCCAATCTTTTCAAGATTA
129 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCAAGATTA
* * * * * * * *** * *
1265974 GGCACTACAAACGTAGTCTTATCGTAAGGATGTGCGATATTGATGCTTTGGTTT-TGCT-AGAAT
194 GCCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCT--TAAGAAA
* *
1266037 GGCTTTCTTCCTACCAATTTTTGTAAAGTCTAAGTTCGCACCTCAAATGAGCCAAACAAGGATTC
257 GGCTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAAATGAGCCAAACAAGGATTC
* * * * *
1266102 TAGTATTGATCTTCATTCATTTTGTGATTAGGCGCTATGAACCACATTCTCCTCGTTAGGATAAA
321 TAGTATTAATCTTCATTCATTTTGTGATTACGCACTAT-AAACACATTCTCCTCATTAGGATAAA
* *
1266167 TGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGT
385 TGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGT
1266232 TCATCCCTTAAATAAGACAAAAATCG
450 TCATCCCTTAAATAAGACAAAAATCG
* *
1266258 ATTCTCATAATAATCTCCATTCTTTTTTGGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
1 ATTCTCATAATAATCTCCATTCTTTTCTAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
*
1266323 ACAAGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
66 ACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* * * * * *
1266388 AGTTTTTCTCATAAATAAGACAAACATGAATACACATGCTCTTCCCCATTCATTTCACGAATAGC
131 AGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCAAGATTAGC
* * *
1266453 CACCATAAACTTAGTCTTCTAATTGGGATACAC-ATTATTGGTGCTTCGGTTTCTTAAGAAAGGC
196 CACCATAAACTTAGTCTTCTCATTAGGATACACGA-TATTGGTGCTTTGGTTTCTTAAGAAAGGC
* * * *
1266517 ATTTTCCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAGTGAGCCAAACAAGGATTCTAG
260 -TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAAATGAGCCAAACAAGGATTCTAG
* * *
1266582 TAATAATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCCTTAGGATAAAAGAT
324 TATTAATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * ** *
1266647 ATTCATGATTTTCTTTTGAGTAAAAATCTTTTCTATGCCCTATTTTACTGAAAATCAAAGTTCAT
389 ATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCAT
* * *** * *
1266712 -CCTTTAGTGTCACAAGAAAAGCT
454 CCCTTAAATAAGAC-A-AAAATCG
* ** * * * * *
1266735 TTTCTTTCCACCGTTTTTAATAAGGTCAAAGTT-TGTATT-TAAATAAGGCAAACATGAATAATC
1 ATTC--T-CA-------TAATAATCTC-CA-TTCT-T-TTCTAGAT-TGGGAACCA--AA-AA-C
* * *
1266798 ATAGTAATCCCCATTCTTTTAAGGATTAGGTACCATAAACATAGTCTTCTCATTAGGATACATGA
47 ACA-T--T-CCC-TTC--------ATTAGG----AT--ACA-AG-----ACATT--G----ATGC
* *
1266863 TATTGATGCTTTGGTGCGACTAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
81 T-TTG--G---T-GT-C-ACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * * *
1266928 TCTCTTAAATAAGACAAACGTGAATACACATACTCTTCCCCATTCTTTTCATGATTAACCACCAC
137 TCTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCAAGATTAGCCACCAT
* * *
1266993 AAACATAGTCTTCTCATTAGGATA-ACCGTTATTGGTGCTTTGGTTTCTTAAGAAAGGTTTTTTC
202 AAACTTAGTCTTCTCATTAGGATACA-CGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTC
* ** * *
1267057 CCACTAATTTTTGTAAAGTCTAAGTTCGTTCCTCAAATGAGCTAAACAAGGATTTTAGTATTAAT
266 CCACCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAAT
* *
1267122 CTTCATTCATTTTGTGATT-CGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATGTTGAT
331 CTTCATTCATTTTGTGATTAC-GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * * * *
1267186 GATTTTTTTCTTGCTTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTACATCCCTT
395 GATTTTCTT-TTGCGTGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTT
* *
1267251 AAATAAGACAAATATTG
459 AAATAAGACAAAAATCG
*
1267268 ATTCTCATAATAGTCTCCATTCTTTTCTAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
1 ATTCTCATAATAATCTCCATTCTTTTCTAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* * * * * *
1267333 GCAAGACCTTAATGCTTTGGTGTCGCAAGAAAAGCTTTTGTTTCCACCATTTTTGATAGAATCAA
66 ACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* *
1267398 AGTTTGTCTCTTAAAAAAGACAAACATGAATACACATACTCTT---C-TAC--TT--AG--T---
131 AGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCAAGATTAGC
*
1267450 ---C-----C----TCTT-TC--TAGGATACACGATATTGGTGCTTTGTTTTCTTAAGAAAGGCT
196 CACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGC-
* * * ** * * *
1267500 TTTTTACCTCCAATTTTTGTAAAGTTTAAGTTCGTACCTTAAATGCGCCAAACAAGGATTCCAGT
260 TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAAATGAGCCAAACAAGGATTCTAGT
* * * **
1267565 CTTAATCTTCATTCATTTTGTGAATACGCACTATAAACACATTCTCCCCATTATTATAAATGATA
325 ATTAATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * * *
1267630 TTGATTATTTTCTTCTACGTAGG-AATCTTTACTATGCCCTATTTTACTTAAAATCAAAGTTCAT
390 TTGATGATTTTCTTTTGCGT-GGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCAT
* **
1267694 CCATTAAATAAGACAAGCATCG
454 CCCTTAAATAAGACAAAAATCG
* * * ** ** *
1267716 ATTCTCGTAACAGTCTCCATTCTTTTC-AGGATTAAGAACCTCAAACACATTCCCTTGATTAGGA
1 ATTCTCATAATAATCTCCATTCTTTTCTA-GATTGGGAACCAAAAACACATTCCCTTCATTAGGA
* * * * * *
1267780 TACATGACATTGATGATTTGGTGTCGCAAGAAAAGCTTTTCATTCCATCGTTTTTGATAGAGTCA
65 TACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCA
* * *
1267845 AAGTTTGTCTCCTAAATAAGAGAAACATGAATACACATACTCTTCCCCATTATTTTCACA-ATTA
130 AAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCA-AGATTA
* *
1267909 GGCACTATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGG
194 GCCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGG
* * * *
1267974 CTTTTTTCCCATCAATTTTTGAAAAGTCTAAATTCACGCCTCAAATGAGCCAAACAAGGATTCTA
259 C-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAAATGAGCCAAACAAGGATTCTA
*
1268039 GTAATAATCTTCATTCATTT
323 GTATTAATCTTCATTCATTT
1268059 CATGATTTGA
Statistics
Matches: 1875, Mismatches: 289, Indels: 230
0.78 0.12 0.10
Matches are distributed among these distances:
447 1 0.00
448 245 0.13
449 126 0.07
450 3 0.00
451 5 0.00
452 1 0.00
454 2 0.00
455 1 0.00
457 1 0.00
458 1 0.00
460 1 0.00
466 1 0.00
468 1 0.00
469 1 0.00
470 2 0.00
472 2 0.00
473 5 0.00
474 2 0.00
475 8 0.00
476 277 0.15
477 379 0.20
478 300 0.16
479 38 0.02
480 2 0.00
482 1 0.00
484 3 0.00
485 4 0.00
487 8 0.00
488 2 0.00
489 6 0.00
490 8 0.00
491 3 0.00
492 2 0.00
493 2 0.00
494 3 0.00
495 1 0.00
496 2 0.00
497 3 0.00
498 3 0.00
499 5 0.00
503 6 0.00
507 6 0.00
511 5 0.00
512 3 0.00
513 4 0.00
514 2 0.00
515 1 0.00
516 3 0.00
517 2 0.00
518 2 0.00
519 4 0.00
520 8 0.00
521 8 0.00
522 2 0.00
523 7 0.00
525 4 0.00
526 3 0.00
528 1 0.00
530 2 0.00
531 2 0.00
532 3 0.00
533 136 0.07
534 192 0.10
535 8 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (475 bp):
ATTCTCATAATAATCTCCATTCTTTTCTAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
ACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
AGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCAAGATTAGC
CACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCT
TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGCGCCTCAAATGAGCCAAACAAGGATTCTAGTA
TTAATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
TGATGATTTTCTTTTGCGTGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCC
CTTAAATAAGACAAAAATCG
Found at i:1267014 original size:159 final size:158
Alignment explanation
Indices: 1266726--1267016 Score: 406
Period size: 159 Copynumber: 1.8 Consensus size: 158
1266716 TAGTGTCACA
* * *
1266726 AGAAAAGCTTTTCTTTCCACCGTTTTTAATAAGGTCAAAGTTTGTATTTAAATAAGGCAAACATG
1 AGAAAAGCTTTTCTTTCCACCATTTTTAATAAGATCAAAGTTTGTATTTAAATAAGACAAACATG
* *** *
1266791 AATAATCATAGTAATCCCCATTCTTTTAAGGATTAGGTACCATAAACATAGTCTTCTCATTAGGA
66 AATAATCATACTAATCCCCATTCTTTTAAGGATTAACCACCACAAACATAGTCTTCTCATTAGGA
1266856 TACATGATATTGATGCTTTGGTGCGACT
131 TACATGATATTGATGCTTTGGTGCGACT
* * *
1266884 AGAAAAGCTTTTCTTTCCACCATTTTTGAT-AGAATCAAAGTTTGTCTCTTAAATAAGACAAACG
1 AGAAAAGCTTTTCTTTCCACCATTTTTAATAAG-ATCAAAGTTTGTAT-TTAAATAAGACAAACA
** * *
1266948 TGAATACA-CATACTCTTCCCCATTCTTTTCATGATTAACCACCACAAACATAGTCTTCTCATTA
64 TGAATA-ATCATACTAATCCCCATTCTTTTAAGGATTAACCACCACAAACATAGTCTTCTCATTA
1267012 GGATA
128 GGATA
1267017 ACCGTTATTG
Statistics
Matches: 115, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
157 2 0.02
158 40 0.35
159 72 0.63
160 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (158 bp):
AGAAAAGCTTTTCTTTCCACCATTTTTAATAAGATCAAAGTTTGTATTTAAATAAGACAAACATG
AATAATCATACTAATCCCCATTCTTTTAAGGATTAACCACCACAAACATAGTCTTCTCATTAGGA
TACATGATATTGATGCTTTGGTGCGACT
Found at i:1269604 original size:159 final size:159
Alignment explanation
Indices: 1268941--1269606 Score: 422
Period size: 159 Copynumber: 4.2 Consensus size: 159
1268931 AACACTTTCC
* * * *
1268941 CTTCATTAGGATACATGACATTGAG-GCTTTGGTGTCGCAAGACAAGCTTTTCTTTTCACCATTT
1 CTTCATTAGGATACACGATATTG-GTGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * * * *
1269005 TTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAATATGAATACACATGCTCTTCCCCATTCT
65 TTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATTCACATACTTTTCTCCATTCT
*
1269070 TTTCACGATTAGGCACCATAAACTTAGTCTT
130 TTTCACGATTAGGCACCATAAACTCAGTC-T
* ** * ** * *
1269101 CTT-ATTAGGATATACGATATTGGCACTTTGGTTTCTTAAGAAAGGC-TTT-TTCCCAGCCAATT
1 CTTCATTAGGATACACGATATTGGTGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-CC-ATT
* * * * * * * * * * *
1269163 TTTG-TA-AATTCTAAA-TTTGTGTCTCAAATTAGCCAAACAAGGATTCTA-GTA-TTAATATTC
64 TTTGATAGAA-TC-AAAGTTTATCTCTTAAATAAGACAAACATGAATTC-ACATACTT-TTCTCC
** * * * * *
1269223 ATTCATTTT-GTGATTCGGTACTAT-AAGTACATTCT
125 ATTC-TTTTCACGATTAGGCACCATAAACT-CAGTCT
* * * * ** * * * * * * ** *
1269258 CTTCATTAGGGTAAATGATGTTTATGATTTTGTTTTGCATGGAAATATTTTCTTTACCA-TATTT
1 CTTCATTAGGATACACGATATTGGTGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CCACCATTT
** * ** * * * * **
1269322 TTCTTAAAATCAAAGTACATCTCTTAAATAGGACAAACATCAATTCTCATAATAGTCTCCATTCT
65 TTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATTCACATACTTTTCTCCATTCT
** * * * * * *
1269387 TTTCTGGATTGGGAACCAAAAACACATTCC
130 TTTCACGATTAGGCACCATAAACTCAGTCT
* * * *
1269417 CTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT
1 CTTCATTAGGATACACGATATTGGTGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
* *
1269482 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATGCACATACTTTTCTCCATTCTT
66 TGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATTCACATACTTTTCTCCATTCTT
* *
1269547 TTCACGATTAGGCACCCTAAACTTAGTCT
131 TTCACGATTAGGCACCATAAACTCAGTCT
*
1269576 -TCTCTTTAGGATACACGATATTGGTGCTTTG
1 CT-TCATTAGGATACACGATATTGGTGCTTTG
1269607 TTTTCTTAAG
Statistics
Matches: 359, Mismatches: 125, Indels: 45
0.68 0.24 0.09
Matches are distributed among these distances:
157 14 0.04
158 94 0.26
159 238 0.66
160 10 0.03
161 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (159 bp):
CTTCATTAGGATACACGATATTGGTGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
TGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATTCACATACTTTTCTCCATTCTT
TTCACGATTAGGCACCATAAACTCAGTCT
Found at i:1269835 original size:476 final size:476
Alignment explanation
Indices: 1268758--1269972 Score: 1553
Period size: 476 Copynumber: 2.6 Consensus size: 476
1268748 GGTTTTCATC
* * * *
1268758 ATGATTACGCACTATAAACACATTCTCCTAATTAGGATAAATGATATTGACGATTTTCTATCGCG
1 ATGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * * * *
1268823 T-AAAATCTTTTCAATGCCCTATTTTACTTAAATTCAAAGTTTATCCTTTAAA-AAGACAAGTAT
66 TGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
* * * * * * *
1268886 CGATTGT-AGTAACAATCTCCATTTTTTTCAGCATTGGGAACCTAAAACACTTTCCCTTCATTAG
131 CGATTCTCA-TAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAG
* * * *
1268950 GATACATGACATTGAGGCTTTGGTGTCGCAAGACAAGCTTTTCTTTTCACCATTTTTGATAGAAT
195 GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
** * * *
1269015 CAAAGTTTATCTCTTAAATAAGACAAATATGAATACACATGCTCTTCCCCATTCTTTTCACGATT
260 CAAAGTTCGTCTCTTAAATAAGACAAACATGAATACACATACTATTCCCCATTCTTTTCACGATT
* * **
1269080 AGGCACCATAAACTTAGTCTTCTTATTAGGATATACGATATTGGCACTTTGGTTTCTTAAGAAAG
325 AGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAG
* * * * *
1269145 GC-TTTTTCCCAGCCAATTTTTGTAAATTCTAAATTTGTGTCTCAAATTAGCCAAACAAGGATTC
390 GCTTTTTTCCCA-CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTC
*
1269209 TAGTATTAATATTCATTCATTTT
454 TAGTATTAATCTTCATTCATTTT
* * ** * * * * *
1269232 GTGATT-CGGTACTATAAGTACATTCTCTTCATTAGGGTAAATGATGTTTATGATTTTGTTTTGC
1 ATGATTAC-GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * * * * * * * * *
1269296 ATGGAAATATTTTCTTTACCATATTTTTCTTAAAATCAAAGTACATCTCTTAAATAGGACAAACA
65 GTGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
* *
1269361 TCAATTCTCATAATAGTCTCCATTCTTTTCTGGATTGGGAACCAAAAACACATTCCCTTCATTAG
130 TCGATTCTCATAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAG
*
1269426 GATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
195 GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
* * * *
1269491 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATGCACATACTTTTCTCCATTCTTTTCACGATT
260 CAAAGTTCGTCTCTTAAATAAGACAAACATGAATACACATACTATTCCCCATTCTTTTCACGATT
* * *
1269556 AGGCACCCTAAACTTAGTCTTCTCTTTAGGATACACGATATTGGTGCTTTGTTTTCTTAAGAAAG
325 AGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAG
*
1269621 GCTTTTTTACCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGCCAAACAAGGATTC
390 GCTTTTTT-CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTC
*
1269686 TAGTATTTATCTTCATTCATTTT
454 TAGTATTAATCTTCATTCATTTT
* * * *
1269709 ATGATTACGTACTATAAACACATTCTCCTCATTAGGATAAGTGATATTGATAATTTTCTTTTTCG
1 ATGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCG
* *
1269774 TGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCTTTAAA-AAGACAAACAT
66 TGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
* ** * * * * * *
1269838 CAATTCTGGTAACAATCTCCATTCTTTTCAGGATTAGGAACCTAAAACACATTCCCTTCGTTAAG
131 CGATTCTCATAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGG
* * * ** *
1269903 ATACATGACATTGATGCTTTGGGGTCACAAGAAAAG-TTTTCTTTGCACCACTTTTGTTAGAATC
196 ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC
1269967 AAAGTT
261 AAAGTT
1269973 TACCTTTTCT
Statistics
Matches: 635, Mismatches: 99, Indels: 13
0.85 0.13 0.02
Matches are distributed among these distances:
473 1 0.00
474 50 0.08
475 69 0.11
476 339 0.53
477 171 0.27
478 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (476 bp):
ATGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCG
TGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
CGATTCTCATAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGG
ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC
AAAGTTCGTCTCTTAAATAAGACAAACATGAATACACATACTATTCCCCATTCTTTTCACGATTA
GGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGG
CTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTA
GTATTAATCTTCATTCATTTT
Found at i:1271099 original size:159 final size:159
Alignment explanation
Indices: 1270298--1274412 Score: 630
Period size: 159 Copynumber: 26.0 Consensus size: 159
1270288 ATTCCCTTCT
* * *
1270298 TTAGGATACATGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCCATCGTTTTTGATA
1 TTAGGATACATGATATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCCACCATTTTTGATA
* * * * * ** * *
1270363 -AGGTCAAAGTTTTTCTTTTAAATAAGACAAACATGAATA-ATCATAGTAATCCCCATTCATTTA
66 GA-ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACA-AATACTCTTCCCCATTCTTTTC
*
1270426 AGGATTAGGTACCATAAACATAGTCTTCTCA
129 AGGATTAGGCACCATAAACATAGTCTTCTCA
* * * * *
1270457 -TAGGGATACACGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTCCACTATTTTTGAT
1 TTA-GGATACATGATATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCCACCATTTTTGAT
* *
1270521 TGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCA
65 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAAATACTCTTCCCCATTCTTTTCA
* * * * *
1270586 CGATTAGCCACAATAAACTTTGTCTTCTCA
130 GGATTAGGCACCATAAACATAGTCTTCTCA
* * * * * ** *
1270616 TTATGATACACGATATTGGTGCTTTAGTTTCTTAGGAAAGGCTTTT-TTTCCCACCAATTTTTG-
1 TTAGGATACATGATATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTT-CCACC-ATTTTTGA
* * * * * * * * * * **
1270679 T-GAAGTCTAAGTTCATG-C-CTTAAATGAGCCAAATAAGGATTCTAGTA-TTTATCTTCATTCA
64 TAGAA-TCAAAGTT--TGTCTCTTAAATAAGACAAACATGAATACAAATACTCT-TCCCCATTC-
* * * ** * * *
1270740 TTTTGA-GATTACGCACTATAAACGCATTCTCCTCG
124 TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* * ** * * ** * * * * ***
1270775 TTAGGATAAATGATATTGATGATTTTCTTTTGTGTGGAAATG-TTTTCTATGCC-CTATTGTACT
1 TTAGGATACATGATATTGATGCTTTGGTGTCG-CAGGAAAAGCTTTTCT-TTCCACCATTTTTGA
* * ** * ** * * * *
1270838 TAAAATCATAGTTCATCCCTTAAATAAGACAAGGATTGATTCTCGTAATAGTC-T--CCATTCTT
64 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAAT-AC-AAATACTCTTCCCCATTCTT
* * * * *
1270900 TTCAGGATTGGGAACC-TAAAACACATTC-TCTTCG
126 TTCAGGATTAGGCACCAT-AAACATAGTCTTC-TCA
* * * * *
1270934 TTAGGATACTTGACATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATA
1 TTAGGATACATGATATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCCACCATTTTTGATA
* * *
1270999 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAAATACTCTTCCCTAGTCTTTTCAT
66 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAAATACTCTTCCCCATTCTTTTCAG
* *
1271064 AATTAGGCACCATAAACTTAGTCTTCTCA
131 GATTAGGCACCATAAACATAGTCTTCTCA
** * * ** * * *
1271093 TTAGGATACACAATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTT-TTCCCACCAATTTTTGA-
1 TTAGGATACATGATATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCCACC-ATTTTTGAT
* * * * * * * * * * ** ** *
1271156 A-AAGTCTAAGTTCGTGC-CTCAAATGAGCCAAACAAGGATTCTAGTACTAATCTTCATTCATTT
65 AGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATACAAATACTCTTCCCCATTCTTTT
* * * * *
1271219 C-GTGATTACGCACTACAAAC-TCATTCTCCTC-
128 CAG-GATTAGGCACCATAAACAT-AGTCTTCTCA
* * ** * * * * * * *
1271250 TCTAGGATAAATGATATTGATGATTTTCTTTTGC-GTGGAAATCTTTTC--TACGCC-TTATTTT
1 T-TAGGATACATGATATTGATGCTTTGGTGTCGCAG-GAAAAGCTTTTCTTTCCACCATT-TTTG
* * * * * * * *
1271311 ACTTAAAATCAAAGTTTATC-CTTTAAATAAGACAAGCATCGATTCTCGTAATAGTC-T--CTAT
63 A--TAGAATCAAAGTTTGTCTC-TTAAATAAGACAAACAT-GAAT-AC-AAATACTCTTCCCCAT
* * * * * *
1271372 TCCTTTT-AGGATTGGGAATC-TAAAACACATTC-TCTTCC
122 T-CTTTTCAGGATTAGGCACCAT-AAACATAGTCTTC-TCA
* * * * * * *
1271410 TTAGGATAGATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCGTTCTATCATTTTTGATA
1 TTAGGATACATGATATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCCACCATTTTTGATA
* * ** * ** * **
1271475 GAGTCAATGTTCATCTCTTAAGTAAGACAAACATGAATACTTATAGTAATCCCCATTCTTTT-AT
66 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAAATACTCTTCCCCATTCTTTTCA-
** *
1271539 GGATTAGAAACCATAAACATAGTGTTCTCA
130 GGATTAGGCACCATAAACATAGTCTTCTCA
* * * * * *
1271569 TTATGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTT-TTCCCTACAAATTTTT-C
1 TTAGGATACATGATATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCC-AC-CATTTTTGA
* * * * * * * ** ** **
1271631 TA-AAGTCTAAGTTCATG-C-CTCAAATGAGACAAACGT-AGATTCTAGTGTTAATCATCATTCA
64 TAGAA-TCAAAGTT--TGTCTCTTAAATAAGACAAACATGA-ATACAAATACTCTTCCCCATTC-
* * * * * *
1271692 TTTT--GTGATTAGCCACTATGAACACA-TTTTCCTTA
124 TTTTCAG-GATTAGGCACCATAAACATAGTCTT-CTCA
* * ** * * *
1271727 TTAGGATAAATGATATTGATGATTTTCTTTTGT-GCA--AAAATCTTTTCTTTGCC-CTATTTTC
1 TTAGGATACATGATATTGATG--CTT-TGGTGTCGCAGGAAAAGCTTTTCTTT-CCACCATTTTT
** * * * * * * *
1271788 CTTAAAATCAAAGTTTATCCCCTAAATAAGACAAGCATTGACT-CTTGCAATAGC-C-T--CCAT
62 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATAC---AAATA-CTCTTCCCCAT
* * * * * * *
1271848 TCTTTTCATGATTGGGAACCAAAAACACATTC-ACTTCA
122 TCTTTTCAGGATTAGGCACCATAAACATAGTCTTC-TCA
* * * * * *
1271886 TTAGGACACTTGACATTGATGCTTTGGTGCTAC-TA-GAAAAGCTTTTCTTAT-CAACGTTTTTG
1 TTAGGATACATGATATTGATGCTTTGGTG-T-CGCAGGAAAAGCTTTTCTT-TCCACCATTTTTG
* ** * *** *
1271948 ATAGAATCGAAGTTCATCTCTTAAATAAGACAAATATGAA-ACTTTTACTATTCCCCATTCTTTT
63 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAAATACTCTTCCCCATTCTTTT
* * *
1272012 CATGATTAGGCACCATAAACTTAGTCTTCACA
128 CAGGATTAGGCACCATAAACATAGTCTTCTCA
* * * * ** * * *
1272044 TTAGGATACACGATATTGGTACTTTGGTTTCTTAAGAAAGGC-TTT-TTTCCTACCAATTTT-AG
1 TTAGGATACATGATATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCC-ACCATTTTTGA-
* * * * * * * * * *
1272106 TA-AAGTCTAAGTTCGTAC-CTCAATTGAGCCAAACAAGGATTCAGTAATAATCTT---CATTCA
64 TAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATACA--AATACTCTTCCCCATTC-
** * * * *
1272166 TTTT--GTGATTACACACTATAAACACACTCTCCTCA
124 TTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCA
* * ** * * * * * *
1272201 TTAGGATAAATGATATTGATGATTTTCTTTTGC-GTGGAAATCTTTTCTATGCC-CAATTTTATG
1 TTAGGATACATGATATTGATGCTTTGGTGTCGCAG-GAAAAGCTTTTCT-TTCCACCATTTT-TG
** * ** * * ** ** * *
1272264 CA-A-AATCAAAGTTCATCACTTAAATAAGACAAGGATCAATTCTCATAAC-AGTCTCCACTCTT
63 -ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAAAT-ACTCTTCCCCATTCTT
* * * * *
1272326 ATCAGGACT-GGCAACC-TAAAACACATTC-CCTTCA
126 TTCAGGATTAGGC-ACCAT-AAACATAGTCTTC-TCA
* * * ** * * *
1272360 TTAGGATACAAGACATTGATCCTTTGGCATCGCAGGAAATGCTTTTCTTTCCATCGTTTTTGATA
1 TTAGGATACATGATATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCCACCATTTTTGATA
* * * * * ** * **
1272425 GAGTCAATGTTCGTCCCTTAAATAAGACAAACTTGAATACTCATAGTAATCCCCATTCTTTT-AT
66 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAAATACTCTTCCCCATTCTTTTCA-
* *
1272489 GGATTAGGAACCATAAACATAGTCTTCTCT
130 GGATTAGGCACCATAAACATAGTCTTCTCA
* * * * * * * *
1272519 TTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGC-TTT-TTCCCTACAAATTTTT-C
1 TTAGGATACATGATATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCC-AC-CATTTTTGA
* * * * * * * ** *** **
1272581 TA-AAGTCTAAGTTTGTGC-CTCAAATGAGACAAACATGGATTCTAGTGTTGAACTTCATTCATT
64 TAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATACAAATACTCTTCCCCATTC-TT
* * * * * *
1272644 TT--GTGATTAGCCACTATGAACACATTCTCCTCA
126 TTCAG-GATTAGGCACCATAAACATAGTCTTCTCA
* * ** * * * * *
1272677 TTAGGATAAATGATATTGATGATTTTCTTTTGC-GTGGAAATCTTTTCTTTGC-CC--------T
1 TTAGGATACATGATATTGATGCTTTGGTGTCGCAG-GAAAAGCTTTTCTTTCCACCATTTTTGAT
* * * * * * * *
1272732 ---ATCAAAGTTTATCCCTTAAATAAGACAAGCATCGACTTTCACAATA---GTCCCTATACATT
65 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GA-ATACA-AATACTCTTCCCCATTC-TT
* * * * * *
1272791 TT-AGGATTGGGAACCAAAAACACATTCTAT-TCG
126 TTCAGGATTAGGCACCATAAACATAGTCT-TCTCA
* * *
1272824 TTAGGATACTTGACATT-ATGCTTTGGTG-CTGCTA-GAAAAGCTTTTCTTTCCACCGTTTTTGA
1 TTAGGATACATGATATTGATGCTTTGGTGTC-GC-AGGAAAAGCTTTTCTTTCCACCATTTTTGA
** ** * *
1272886 TAGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATT-TTCGT
64 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAAATACTCTTCCCCATTCTT-TT
* * * *
1272950 CATGATTAGGCACCATAAACTTTGTCTTCTCT
128 CAGGATTAGGCACCATAAACATAGTCTTCTCA
* * ** * ** * *
1272982 TTAGGATACACGATATT-AGTGCTTTGGTTTCTTAAGAATGGCCTTT-TTCCCACCAATTTTTG-
1 TTAGGATACATGATATTGA-TGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCCACC-ATTTTTGA
* * * * * * * * * * *
1273044 TA-AAGTCTAAGTTCATG-C-CTCAAATGAGCCAAGCAAGGATTCTAGTAACAATATT---CATT
64 TAGAA-TCAAAGTT--TGTCTCTTAAATAAGACAAACATGAATAC-A--AATACTCTTCCCCATT
* * * * * * *
1273103 CATTTCATGATTATGCACTATAAACACATTCTCCTCA
123 CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* * * ** * * * * * *
1273140 CTAGGATAAATGATATTGATGATTTTCTTTTGC-GTGAAAATCTTTTC-TACGC-CC-TATTTAA
1 TTAGGATACATGATATTGATGCTTTGGTGTCGCAG-GAAAAGCTTTTCTTTC-CACCATTTTTGA
* * ** * * * * *
1273201 CTTAAAACCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTC-T--CCATTC
64 --TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAAT-ACA-AATACTCTTCCCCATTC
* * * *
1273263 TTTTCAAGATT-GGGAGCCAAAAACATATTC-TCTTCA
124 TTTTCAGGATTAGGCA-CCATAAACATAGTCTTC-TCA
* * *
1273299 TTAGGATACTTGACATTGATGCTTTGGTG-CTGCTA-GAAAAGCTTTTCTTTCCACCGTTTTTGA
1 TTAGGATACATGATATTGATGCTTTGGTGTC-GC-AGGAAAAGCTTTTCTTTCCACCATTTTTGA
* ** * ** * * *
1273362 TGGAATCAAAGTTCATCTCTTAAAAAAGACAAACATGAATACTCATACTATTCCCTATACTTTTC
64 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAAATACTCTTCCCCATTCTTTTC
* * * * *
1273427 ATGATTAGGCACCATTAACTTTGTCTTCTCC
129 AGGATTAGGCACCATAAACATAGTCTTCTCA
* * * * ** * * * *
1273458 TTAGGATACACGATATTGGTGCTATGGTTTCTTAAGAAAGGGTTTT-TTCCCACCAATTTTTG-T
1 TTAGGATACATGATATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCCACC-ATTTTTGAT
* * * * * * * * * * **
1273521 A-AAGTCTAAGTTCGTGC-CTCAAATAAGCCAAACAAGGATTCTAGTA-TTTATCTTCATTCATT
65 AGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATACAAATACTCT-TCCCCATTC-TT
* * * *
1273583 TT--GTGATTACGCACTC-TAAACACATTCTCCTCA
126 TTCAG-GATTAGGCAC-CATAAACATAGTCTTCTCA
* * * * ** * * * * *
1273616 TTAGGATAAATTATACTGATGATTTTCTTTTGCGTGGAAATG-TTTT-TTAAGCC-CCA-TTTTG
1 TTAGGATACATGATATTGATGCTTTGGTGTCGC-AGGAAAAGCTTTTCTT--TCCACCATTTTTG
* * * ** * * * * * * * * *
1273677 CTTAAAATCATTA-TTCATCCCTTAAATCAGAAAAAGATCGATTCTCGTAACAATC-T--CCATT
63 -ATAGAATCA-AAGTTTGTCTCTTAAATAAGACAAACAT-GAAT-AC-AAATACTCTTCCCCATT
* * * * *
1273738 CTTTTCAGGATT-GGGAACATAAAACACATTC-CCTTCA
123 CTTTTCAGGATTAGGCACCAT-AAACATAGTCTTC-TCA
* * * * *
1273775 TTAGGATACTTGACATTGATGCTTTGGTGCTAC-TA-GAAAAGCTTTTCTTTTCACCGTTTTTGA
1 TTAGGATACATGATATTGATGCTTTGGTG-T-CGCAGGAAAAGCTTTTCTTTCCACCATTTTTGA
* *
1273838 TAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAATACATATACTCTTCCCCATTCTTTTC
64 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAAATACTCTTCCCCATTCTTTTC
* *
1273903 ACGATTAGGCACCATAAACTTAGTCTTCTCA
129 AGGATTAGGCACCATAAACATAGTCTTCTCA
* * * * ** * * *
1273934 TTAGGATACAAGATATTGGTGCTTTGCTTTCTTAAGAAAGGCTTTT-TTCCCACCAATTTTTG-T
1 TTAGGATACATGATATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCCACC-ATTTTTGAT
* * * * * * * * *
1273997 A-AAGTCTAAGTTCGTAC-CTTAAATGAGCCAAACAAGGATTCTAGTAATAATCTT---CATTCA
65 AGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATAC-A--AATACTCTTCCCCATTCT
* * * * * *
1274057 TTTCATGATTACGCACAATAAACACATTCTCCTCA
125 TTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* * * ** * * * * * * *
1274092 TTAGGATAAATGATTTTGATGATTTTCTTTGGC-GTGGAAATCTTTGCTATGC-CC-TATTTTGC
1 TTAGGATACATGATATTGATGCTTTGGTGTCGCAG-GAAAAGCTTTTCTTTCCACCAT-TTTTG-
* * * * * * * * *
1274154 TTAAAATCAAAGTTCT-ACCCTTAAA-AAGACAAGCATCAATTCTAGTAACAATCTT---CATTC
63 ATAGAATCAAAGTT-TGTCTCTTAAATAAGACAAACATGAATAC-A--AATACTCTTCCCCATTC
* * * * *
1274214 TTTTCAAGATTGGGAACC-TAAAACATATTCCTT-TCC
124 TTTTCAGGATTAGGCACCAT-AAACATAGT-CTTCTCA
** * * *
1274250 TTAGGATA-ATGGCATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCACCTTTTTTGATA
1 TTAGGATACATGATATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCCACCATTTTTGATA
* * * * * *
1274314 -AGGTCAAAGTTTGTCTTTTAAAAAAGACAAACATGAATA-ATCATAGTAATT-CCCATTCTTTT
66 GA-ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACA-AATACT-CTTCCCCATTCTTTT
* * * *
1274376 CTGTATTAGGTACCATAAACACAGTCTTCTCA
128 CAGGATTAGGCACCATAAACATAGTCTTCTCA
1274408 TTAGG
1 TTAGG
1274413 TGATGACAAC
Statistics
Matches: 2791, Mismatches: 880, Indels: 571
0.66 0.21 0.13
Matches are distributed among these distances:
146 24 0.01
147 69 0.02
148 3 0.00
149 3 0.00
150 3 0.00
154 1 0.00
155 13 0.00
156 52 0.02
157 198 0.07
158 956 0.34
159 1287 0.46
160 118 0.04
161 46 0.02
162 16 0.01
163 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (159 bp):
TTAGGATACATGATATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCCACCATTTTTGATA
GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAAATACTCTTCCCCATTCTTTTCAG
GATTAGGCACCATAAACATAGTCTTCTCA
Found at i:1271364 original size:476 final size:476
Alignment explanation
Indices: 1270471--1274412 Score: 4986
Period size: 476 Copynumber: 8.3 Consensus size: 476
1270461 GATACACGAT
* * ** * *
1270471 ATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTCCACTATTTTTGATTGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGT
* * * * *
1270536 CTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCACGATTAGCCACAATA
66 CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCACCATA
* * * *
1270601 AACTTTGTCTTCTCATTATGATACACGATATTGGTGCTTTAGTTTCTTAGGAAAGGCTTTTTTTC
131 AACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGC-TTTTTTC
* * * * *
1270666 CCACCAATTTTTGTGAAGTCTAAGTTCATGCCTTAAATGAGCCAAATAAGGATTCTAGTATTTAT
195 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAAT
* * *
1270731 CTTCATTCATTTTGAGATTACGCACTATAAACGCATTCTCCTCGTTAGGATAAATGATATTGATG
260 CTTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * * *
1270796 ATTTTCTTTTGTGTGGAAATGTTTTCTATGCCCTATTGTACTTAAAATCATAGTTCATCCCTTAA
325 ATTTTCTTTTGCGTGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAA
* *
1270861 ATAAGACAAGGATTGATTCTCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACAT
390 ATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACAT
*
1270926 TCTCTTCGTTAGGATACTTGAC
455 TCTCTTCATTAGGATACTTGAC
* *
1270948 ATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGT
** * * * *
1271013 CTCTTAAATAAGACAAACATGAATACAAATACTCTTCCCTAGTCTTTTCATAATTAGGCACCATA
66 CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCACCATA
*
1271078 AACTTAGTCTTCTCATTAGGATACACAATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCC
131 AACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCC
* *
1271143 CACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTACTAATC
196 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAATC
* * *
1271208 TTCATTCATTTCGTGATTACGCACTACAAACTCATTCTCCTC-TCTAGGATAAATGATATTGATG
261 TTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCAT-TAGGATAAATGATATTGATG
* * * *
1271272 ATTTTCTTTTGCGTGGAAATCTTTTCTACGCCTTATTTTACTTAAAATCAAAGTTTATCCTTTAA
325 ATTTTCTTTTGCGTGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAA
* *
1271337 ATAAGACAAGCATCGATTCTCGTAATAGTCTCTATTCCTTTT-AGGATTGGGAATCTAAAACACA
390 ATAAGACAAGCATCGATTCTCGTAATAGTCTCCATT-CTTTTCAGGATTGGGAACCTAAAACACA
* **
1271401 TTCTCTTCCTTAGGATAGATGAC
454 TTCTCTTCATTAGGATACTTGAC
* * * * * * * *
1271424 ATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCGTTCTATCATTTTTGATAGAGTCAATGTTCAT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGT
* * * * **
1271489 CTCTTAAGTAAGACAAACATGAATACTTATAGTAATCCCCATTCTTTT-ATGGATTAGAAACCAT
66 CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAT-GATTAGGCACCAT
* * * * * ** *
1271553 AAACATAGTGTTCTCATTATGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTTTTC
130 AAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTC
* * * * * *
1271617 CCTACAAATTTTTCTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACGTA-GATTCTAGTGTTA
195 CC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAAC-AAGGATTCTAGTATTA
* * * *
1271681 ATCATCATTCATTTTGTGATTA-GCCACTATGAACACATTTTCCTTATTAGGATAAATGATATTG
258 ATCTTCATTCATTTTGTGATTACG-CACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
* *** * * * *
1271745 ATGATTTTCTTTTGTGCAAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCC
322 ATGATTTTCTTTTGCGTGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCT
* * * * * * *
1271810 TAAATAAGACAAGCATTGACTCTTGCAATAGCCTCCATTCTTTTCATGATTGGGAACCAAAAACA
387 TAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACA
* *
1271875 CATTCACTTCATTAGGACACTTGAC
452 CATTCTCTTCATTAGGATACTTGAC
* * * *
1271900 ATTGATGCTTTGGTG-CTACTAGAAAAGCTTTTCTTAT-CAACGTTTTTGATAGAATCGAAGTTC
1 ATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTT-TCCACCGTTTTTGATAGAATCAAAGTTC
* * **
1271963 ATCTCTTAAATAAGACAAATATGAA-ACTTTTACTATTCCCCATTCTTTTCATGATTAGGCACCA
64 GTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCACCA
* *
1272027 TAAACTTAGTCTTCACATTAGGATACACGATATTGGTACTTTGGTTTCTTAAGAAAGGCTTTTTT
129 TAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTT
* * * * *
1272092 CCTACCAATTTTAGTAAAGTCTAAGTTCGTACCTCAATTGAGCCAAACAAGGATTC-AGTAATAA
194 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAA
* *
1272156 TCTTCATTCATTTTGTGATTACACACTATAAACACACTCTCCTCATTAGGATAAATGATATTGAT
259 TCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * *
1272221 GATTTTCTTTTGCGTGGAAATCTTTTCTATGCCCAATTTTA-TGCAAAATCAAAGTTCATCACTT
324 GATTTTCTTTTGCGTGGAAATCTTTTCTATGCCCTATTTTACT-TAAAATCAAAGTTCATCCCTT
* * * * * * * *
1272285 AAATAAGACAAGGATCAATTCTCATAACAGTCTCCACTCTTATCAGGACTGGCAACCTAAAACAC
388 AAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACAC
* **
1272350 ATTCCCTTCATTAGGATACAAGAC
453 ATTCTCTTCATTAGGATACTTGAC
* ** * * * * *
1272374 ATTGATCCTTTGGCATCGCAGGAAATGCTTTTCTTTCCATCGTTTTTGATAGAGTCAATGTTCGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGT
* * * * *
1272439 CCCTTAAATAAGACAAACTTGAATACTCATAGTAATCCCCATTCTTTT-ATGGATTAGGAACCAT
66 CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAT-GATTAGGCACCAT
* * * **
1272503 AAACATAGTCTTCTCTTTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGC-TTTTTC
130 AAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTC
* * * * * *
1272567 CCTACAAATTTTTCTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGTTGA
195 CC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATT-A
*
1272632 A-CTTCATTCATTTTGTGATTA-GCCACTATGAACACATTCTCCTCATTAGGATAAATGATATTG
258 ATCTTCATTCATTTTGTGATTACG-CACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
* *
1272695 ATGATTTTCTTTTGCGTGGAAATCTTTTCTTTG-CC-------C-T---ATCAAAGTTTATCCCT
322 ATGATTTTCTTTTGCGTGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCT
** * *
1272748 TAAATAAGACAAGCATCGACTT-TCACAATAGTC-CCTATACATTTT-AGGATTGGGAACCAAAA
387 TAAATAAGACAAGCATCGA-TTCTCGTAATAGTCTCC-ATTC-TTTTCAGGATTGGGAACCTAAA
* *
1272810 ACACATTCTATTCGTTAGGATACTTGAC
449 ACACATTCTCTTCATTAGGATACTTGAC
* *
1272838 ATT-ATGCTTTGGTG-CTGCTAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCA
1 ATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCG
*
1272901 TCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATT-TTCGTCATGATTAGGCACCA
65 TCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTT-TTCATGATTAGGCACCA
* * * * *
1272965 TAAACTTTGTCTTCTCTTTAGGATACACGATATTAGTGCTTTGGTTTCTTAAGAATGGCCTTTTT
129 TAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTT
* * **
1273030 CCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAGCAAGGATTCTAGTAACAA
194 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAA
* ** * *
1273095 TATTCATTCATTTCATGATTATGCACTATAAACACATTCTCCTCACTAGGATAAATGATATTGAT
259 TCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * * *
1273160 GATTTTCTTTTGCGTGAAAATCTTTTCTACGCCCTATTTAACTTAAAACCAAAGTTCATCCCTTA
324 GATTTTCTTTTGCGTGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTA
* * * * *
1273225 AATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAGCCAAAAACATA
389 AATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACA
1273290 TTCTCTTCATTAGGATACTTGAC
454 TTCTCTTCATTAGGATACTTGAC
* * *
1273313 ATTGATGCTTTGGTG-CTGCTAGAAAAGCTTTTCTTTCCACCGTTTTTGATGGAATCAAAGTTCA
1 ATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCG
* * *
1273377 TCTCTTAAAAAAGACAAACATGAATACTCATACTATTCCCTATACTTTTCATGATTAGGCACCAT
65 TCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCACCAT
* * * * *
1273442 TAACTTTGTCTTCTCCTTAGGATACACGATATTGGTGCTATGGTTTCTTAAGAAAGGGTTTTTTC
130 AAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTC
* *
1273507 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGCCAAACAAGGATTCTAGTATTTAT
195 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAAT
* * *
1273572 CTTCATTCATTTTGTGATTACGCACTCTAAACACATTCTCCTCATTAGGATAAATTATACTGATG
260 CTTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * * * * *
1273637 ATTTTCTTTTGCGTGGAAATGTTTTTTAAGCCCCATTTTGCTTAAAATCATTA-TTCATCCCTTA
325 ATTTTCTTTTGCGTGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCA-AAGTTCATCCCTTA
* * * * *
1273701 AATCAGAAAAAG-ATCGATTCTCGTAACAATCTCCATTCTTTTCAGGATTGGGAACATAAAACAC
389 AATAAG-ACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACAC
*
1273765 ATTCCCTTCATTAGGATACTTGAC
453 ATTCTCTTCATTAGGATACTTGAC
* * *
1273789 ATTGATGCTTTGGTG-CTACTAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTCG
1 ATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCG
* *
1273853 TCTCTTAAATAAGACAAACATGAATACAT-ATACTCTTCCCCATTCTTTTCACGATTAGGCACCA
65 TCTCTTAAATAAGACAAACATGAATAC-TCATACTATTCCCCATTCTTTTCATGATTAGGCACCA
* *
1273917 TAAACTTAGTCTTCTCATTAGGATACAAGATATTGGTGCTTTGCTTTCTTAAGAAAGGCTTTTTT
129 TAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTT
* * *
1273982 CCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTTAAATGAGCCAAACAAGGATTCTAGTAATAA
194 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAA
** * *
1274047 TCTTCATTCATTTCATGATTACGCACAATAAACACATTCTCCTCATTAGGATAAATGATTTTGAT
259 TCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * *
1274112 GATTTTCTTTGGCGTGGAAATCTTTGCTATGCCCTATTTTGCTTAAAATCAAAGTTC-TACCCTT
324 GATTTTCTTTTGCGTGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCAT-CCCTT
* * * * * * *
1274176 AAA-AAGACAAGCATCAATTCTAGTAACAATCTTCATTCTTTTCAAGATTGGGAACCTAAAACAT
388 AAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACAC
* * *
1274240 ATTC-CTTTCCTTAGGATA-ATGGC
453 ATTCTC-TTCATTAGGATACTTGAC
* * * *
1274263 ATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCACCTTTTTTGATA-AGGTCAAAGTTTG
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGA-ATCAAAGTTCG
* * * * *
1274327 TCTTTTAAAAAAGACAAACATGAATAATCATAGTAATT-CCCATTCTTTTC-TGTATTAGGTACC
65 TCTCTTAAATAAGACAAACATGAATACTCATACT-ATTCCCCATTCTTTTCATG-ATTAGGCACC
**
1274390 ATAAACACAGTCTTCTCATTAGG
128 ATAAACTTAGTCTTCTCATTAGG
1274413 TGATGACAAC
Statistics
Matches: 2998, Mismatches: 405, Indels: 127
0.85 0.11 0.04
Matches are distributed among these distances:
462 5 0.00
463 289 0.10
464 95 0.03
465 5 0.00
471 1 0.00
472 1 0.00
473 5 0.00
474 401 0.13
475 429 0.14
476 1580 0.53
477 187 0.06
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (476 bp):
ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGT
CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCACCATA
AACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCC
CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAATC
TTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
TTTTCTTTTGCGTGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAA
TAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATT
CTCTTCATTAGGATACTTGAC
Found at i:1275472 original size:24 final size:23
Alignment explanation
Indices: 1275441--1275517 Score: 74
Period size: 24 Copynumber: 3.5 Consensus size: 23
1275431 AAAAGAAAGA
1275441 AGAGATAGGAGGGATGATGGGAGG
1 AGAGATAGGAGGGATGAT-GGAGG
* *
1275465 AGAGATAGGA---AAGAT--AGT
1 AGAGATAGGAGGGATGATGGAGG
*
1275483 AGAGATAGGAAGGATGATAGGAGG
1 AGAGATAGGAGGGATGAT-GGAGG
1275507 AGAGATAGGAG
1 AGAGATAGGAG
1275518 AGATAATAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
18 12 0.29
21 8 0.19
24 22 0.52
ACGTcount: A:0.42, C:0.00, G:0.45, T:0.13
Consensus pattern (23 bp):
AGAGATAGGAGGGATGATGGAGG
Found at i:1275490 original size:42 final size:42
Alignment explanation
Indices: 1275432--1275550 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
1275422 TAGCCCTCAA
* * *
1275432 AAAGAAAGAAGAGATAGGAGGGATGATGGGAGGAGAGATAGG
1 AAAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
*
1275474 AAAGATAGTAGAGATAGGAAGGATGATAGGAGGAGAGATAGG
1 AAAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
* * * *
1275516 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AAAGATAGTAGAGATAGGAGGGATGATAGGAGGAG
1275551 GAGAGAAGAA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.45, C:0.01, G:0.44, T:0.11
Consensus pattern (42 bp):
AAAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
Found at i:1275513 original size:12 final size:12
Alignment explanation
Indices: 1275441--1275517 Score: 53
Period size: 12 Copynumber: 6.9 Consensus size: 12
1275431 AAAAGAAAGA
1275441 AGAGATAGGAGG
1 AGAGATAGGAGG
*
1275453 -GATGATGGGAGG
1 AGA-GATAGGAGG
1275465 AGAGATAGGA--
1 AGAGATAGGAGG
*
1275475 A-AGAT---AGT
1 AGAGATAGGAGG
1275483 AGAGATAGGAAGG
1 AGAGATAGG-AGG
*
1275496 A-TGATAGGAGG
1 AGAGATAGGAGG
1275507 AGAGATAGGAG
1 AGAGATAGGAG
1275518 AGATAATAGA
Statistics
Matches: 50, Mismatches: 5, Indels: 20
0.67 0.07 0.27
Matches are distributed among these distances:
6 1 0.02
8 1 0.02
9 8 0.16
10 1 0.02
11 6 0.12
12 28 0.56
13 5 0.10
ACGTcount: A:0.42, C:0.00, G:0.45, T:0.13
Consensus pattern (12 bp):
AGAGATAGGAGG
Found at i:1275518 original size:9 final size:9
Alignment explanation
Indices: 1275462--1275522 Score: 50
Period size: 9 Copynumber: 6.1 Consensus size: 9
1275452 GGATGATGGG
1275462 AGGAGAGAT
1 AGGAGAGAT
*
1275471 AGGAAAGAT
1 AGGAGAGAT
*
1275480 AGTAGAGAT
1 AGGAGAGAT
1275489 AGGAAGGATGAT
1 AGG-A-GA-GAT
1275501 AGGAGGAGAGAT
1 ---AGGAGAGAT
1275513 AGGAGAGAT
1 AGGAGAGAT
1275522 A
1 A
1275523 ATAGAGAGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
9 27 0.64
10 1 0.02
11 2 0.05
12 6 0.14
13 2 0.05
14 1 0.02
15 3 0.07
ACGTcount: A:0.46, C:0.00, G:0.41, T:0.13
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:1282196 original size:159 final size:159
Alignment explanation
Indices: 1281947--1282310 Score: 434
Period size: 159 Copynumber: 2.3 Consensus size: 159
1281937 ATTCCCTTCC
* * *
1281947 TTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATA
1 TTAGGATATACGATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACTATTTTTGATA
* * * *
1282012 AGGTCGAAGTTTGTCTTTTAAATAAGACAAACACGAATA-ATCATAGTAATCCCCATTCTTTTAT
66 AGATCGAAGTTTGTCTTTTAAATAAGACAAACACGAATACA-CATACTAATCCCCATTCCTTT-C
* *
1282076 G-TATTAGGTACCATAAACATTA-TCTTCTCA
129 GCGATTAGGCACCATAAAC-TTACTCTTCTCA
* ** *
1282106 TTAGGATATACGATATTGATGCTTTGGTGTCGTAAGAAATGCTTTTCTTTCCTTTGTTTTTGATG
1 TTAGGATATACGATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACTATTTTTGAT-
* **
1282171 AA-ATC-AGAGTTTGT-TTCTTAAATAAGACAAACAGGAATACACATACTCTTCCCCATTCCTTT
65 AAGATCGA-AGTTTGTCTT-TTAAATAAGACAAACACGAATACACATACTAATCCCCATTCCTTT
1282233 CGCGATTAGGCACCATAAACTTACTCTTCTCA
128 CGCGATTAGGCACCATAAACTTACTCTTCTCA
* * * * * *
1282265 TTAGGATACACGATACTGGTGCATTGGTTTCGTAAGAAAGGCTTTT
1 TTAGGATATACGATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTT
1282311 TTCCCACCAA
Statistics
Matches: 177, Mismatches: 22, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
158 7 0.04
159 167 0.94
160 3 0.02
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.37
Consensus pattern (159 bp):
TTAGGATATACGATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACTATTTTTGATA
AGATCGAAGTTTGTCTTTTAAATAAGACAAACACGAATACACATACTAATCCCCATTCCTTTCGC
GATTAGGCACCATAAACTTACTCTTCTCA
Found at i:1282797 original size:476 final size:476
Alignment explanation
Indices: 1282103--1284825 Score: 3417
Period size: 476 Copynumber: 5.7 Consensus size: 476
1282093 CATTATCTTC
* * * ****
1282103 TCATTAGGATA-TACGATATTGATGCTTTGGTGTCGTAAGAAATGCTTTTCTTTCCTTTGTTTTT
1 TCATTAGGATACT-TGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * * * *
1282167 GAT-GAAATCAGAGTTTGTTTCTTAAATAAGACAAACAGGAATACACATACTCTTCCCCATTCCT
65 GATAG-AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTT
* * * * *
1282231 TTCGCGATTAGGCACCATAAACTTACTCTTCTCATTAGGATACACGATACTGGTGCATTGGTTTC
129 TTCACGATTAGGCACCATAAACTTAGTCTTCTCAATAGGATACACGATATTGGTGCTTTGGTTTC
* * * * * *
1282296 GTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAATGTCTATGTTCGTGCTTCAAATGAGCCAAAC
194 TTAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* * *
1282361 GAGGATTCTAGTATTAATCTTCATTCATTTTGTGATTCA-GCGCTATAAACACATTCTCCTCATT
259 AAGGATTCAAGTATTAATCTTCATTCATTTTGTGATT-AGGCACTATAAACACATTCTCCTCATT
* * * * * *
1282425 AGAATAACTTATATTGATGATTTTCTTTTGCGTGGAAATATTTTCTATGCCCTATTTTACTTAAA
323 AGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTATGTCCTATTTTCCTTAAA
* * * *
1282490 ATCAATGTTCACCCCTTAAATAAGACAAGGATCGATTGTCGTAACAGTCTCCATTCTTTTGAAGA
388 ATCAATGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTCAGGA
1282555 TTGGGAACCTAAAACACATTCCCT
453 TTGGGAACCTAAAACACATTCCCT
* *
1282579 TCATTAGGGTACTTGACATTAATGCTTTGGTGTCGT-AGAAAAAGCTTTTCTTTCCACCATTTTT
1 TCATTAGGATACTTGACATTGATGCTTTGGTGTCGTAAG-AAAAGCTTTTCTTTCCACCATTTTT
*
1282643 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAT-ATACTCTTCCCCATTCTT
65 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-TCATACTATTCCCCATTCTT
* *
1282707 TTCACGATTAGGCACCATAAACTTAGTCTTCTCAATACGATACACGATATTGGTGCTTTGGATTC
129 TTCACGATTAGGCACCATAAACTTAGTCTTCTCAATAGGATACACGATATTGGTGCTTTGGTTTC
** * * * *
1282772 TTAAGAAAACCATTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATAAGACAGAC
194 TTAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* * * * * * *
1282837 ATGGATTCCAGTATTGATCTTTATTCATTTTGTGATTAGGCACTATGAACACA-TCCCCTACACT
259 AAGGATTCAAGTATTAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-CATT
* *
1282901 AGGATAAATGATATTGATGATTTTCTTTTGCATGGCAAA-CTTTTCTTTGTCCTATTTTCCTTAA
323 AGGATAAATGATATTGATGATTTTCTTTTGCGTGG-AAATCTTTTCTATGTCCTATTTTCCTTAA
* * * **
1282965 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGACTCTCGTAATGGTCTCCATTCTTTTCAGG
387 AATCAATGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTCAGG
* *
1283030 ATTGGGAACCAAAAACACATTCTCT
452 ATTGGGAACCTAAAACACATTCCCT
* *
1283055 TCATTAGGATACTTGACATTGATGCTTTGGT-ACTGCT-AGAAAAGCCTTTT-TTTCCACCGTTT
1 TCATTAGGATACTTGACATTGATGCTTTGGTGTC-G-TAAGAAAAG-CTTTTCTTTCCACCATTT
* * ** *
1283117 TTGATAGAATCAAAGTTCGACTCTTAAATAAGATGAACATGAATACTCATACTATTCCTCATTCT
63 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCT
** * ** *
1283182 TTTCTTGATTAGGCACCATAAACTTAGTCTTCACCTTAAGATACACGATATTGGTGCTTTGGTTT
128 TTTCACGATTAGGCACCATAAACTTAGTCTTCTCAATAGGATACACGATATTGGTGCTTTGGTTT
* * * * *
1283247 TTTAAGAAAGGCTTTTTTCCCTCCAATTTTTGTAAACTCTAAGTTCGTGCCTCAAATGAGCCAAA
193 CTTAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
* * * * * *
1283312 CAAGGATTCAAGAATTTATCTTCTTTCATTTTGTAATTATGCACTATAAACACATTCTCCTCGTT
258 CAAGGATTCAAGTATTAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
* * * * *
1283377 AGGATAAATAATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTACGTCATATTTTGCATAAA
323 AGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTATGTCCTATTTTCCTTAAA
* * *
1283442 ATCAATTTTCATCCCTTAAACAAGACATGGATCGATTCTCGTAACAGTCTCCATTCTTTTCAGGA
388 ATCAATGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTCAGGA
*
1283507 TTGGGAACCTAAAACACATTCCTT
453 TTGGGAACCTAAAACACATTCCCT
* * * *
1283531 TCATTAGGGTACTTGACATTAATGCTTTGGTGTCGCAAGAAAAGTTTTTCTTTCCACCATTTTTG
1 TCATTAGGATACTTGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCATTTTTG
*
1283596 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAT-ATACTCTTCCCCATTCTTT
66 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-TCATACTATTCCCCATTCTTT
* **
1283660 TCACGATTACGCACCATAAACTTAGTCTTCTCAATACAATACACGATATTGGTGCTTT-GTATTC
130 TCACGATTAGGCACCATAAACTTAGTCTTCTCAATAGGATACACGATATTGGTGCTTTGGT-TTC
** *
1283724 TTAAGAAAACCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAAC
194 TTAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* * * * * * * * *
1283789 ATGGATTCCAGTATTGATATTTATTCATTTTGTGATTAGGCACTCTGAACACATCCT-CTACACT
259 AAGGATTCAAGTATTAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-CATT
* *
1283853 AGGATAAATGATCTTGATGATTTTCTTTTGCGTGGTAAA-CTTTTCTTTGTCCTATTTTCCTTAA
323 AGGATAAATGATATTGATGATTTTCTTTTGCGTGG-AAATCTTTTCTATGTCCTATTTTCCTTAA
* * * * **
1283917 AAGCAAAGTTCATCCCTTAAATAAGACAAGCATCGACTCTCGTAATGGTCTCCATTCTTTTCAGG
387 AATCAATGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTCAGG
* *
1283982 ATTGGGAACCAAAAACACATTCTCT
452 ATTGGGAACCTAAAACACATTCCCT
** *
1284007 TCATTAGGATACTTGACATTGATGCTTTGGTG-CTGCT-AGAAAAGCCCTTCTTTCCACCGTTTT
1 TCATTAGGATACTTGACATTGATGCTTTGGTGTC-G-TAAGAAAAGCTTTTCTTTCCACCATTTT
* * ** *
1284070 TGATAGAATCAAAGTTCGACTCTTAAATAAGGTAAACATGAATACTCATACTATTCCTCATTC-T
64 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTT
** * * **
1284134 TTCTTGATTAGGCACCATAAACCTAGTCTTCGCCTTAGGATACACGATATTGGTGCTTTGGTTTC
129 TTCACGATTAGGCACCATAAACTTAGTCTTCTCAATAGGATACACGATATTGGTGCTTTGGTTTC
* * *
1284199 TTAAGAAAGGCTTTTTT-TCCCTCAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAA
194 TTAAGAAAGGCTTTTTTCTCAC-C-AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA
* * *
1284263 ACAAGGATTCAAGTATTTATCTTCTTTCATTTTGTGATTATGCACTATAAACACATTCTCCTCAT
257 ACAAGGATTCAAGTATTAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAT
* * *
1284328 TAGAATAAATAATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTATG-CCATATTTTGCTTA
322 TAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTATGTCC-TATTTTCCTTA
* *
1284392 AAATCAATGTTCATCCCTTAAACAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTTAG
386 AAATCAATGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTCAG
*
1284457 GATTTGGAACCTAAAACACATTCCCT
451 GATTGGGAACCTAAAACACATTCCCT
* * * * *
1284483 TCATTAGGATACTTGACATTGATGCTTTGGTGTGGCAAGAAAGGCTTTTCTTTTCGCCATTTTTG
1 TCATTAGGATACTTGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * *
1284548 ATAGAATCAAATTTTGCCTCTTAAATAAGACAAATATGAATACTCATACTAATT-CCCATTCTTT
66 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT-ATTCCCCATTCTTT
* * ** * * * *
1284612 TCGA-GATTAGGCACTACAAACGCAGTCTTCTC-ATAAGGATGCATGATATTGATTCTTTGGTTT
130 TC-ACGATTAGGCACCATAAACTTAGTCTTCTCAAT-AGGATACACGATATTGGTGCTTTGGTTT
** * * * *
1284675 -TGCT-AGAAAGGC-TTTCCCTCTACCAATTTTTGTAAAGTTTATGTTTGTGCCTTAAATGAGAC
193 CT--TAAGAAAGGCTTTTTTCTC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
* * * * *
1284737 AAACAAGGATTCTAGTATTAATCTTCATTCATTTTGTGATTCGGCACTATGAACATATTCTCATC
255 AAACAAGGATTCAAGTATTAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC
*
1284802 GTTAGGATAAATGATATTGATGAT
320 ATTAGGATAAATGATATTGATGAT
1284826 AGTCTCCATT
Statistics
Matches: 1927, Mismatches: 281, Indels: 78
0.84 0.12 0.03
Matches are distributed among these distances:
474 3 0.00
475 98 0.05
476 1734 0.90
477 90 0.05
478 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.37
Consensus pattern (476 bp):
TCATTAGGATACTTGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCATTTTTG
ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTT
CACGATTAGGCACCATAAACTTAGTCTTCTCAATAGGATACACGATATTGGTGCTTTGGTTTCTT
AAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAA
GGATTCAAGTATTAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
ATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTATGTCCTATTTTCCTTAAAATC
AATGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTCAGGATTG
GGAACCTAAAACACATTCCCT
Found at i:1283778 original size:952 final size:950
Alignment explanation
Indices: 1282186--1284825 Score: 4103
Period size: 952 Copynumber: 2.8 Consensus size: 950
1282176 AGAGTTTGTT
* * * * * **
1282186 TCTTAAATAAGACAAACAGGAATACACATACTCTTCCCCATTCCTTTCGCGATTAGGCACCATAA
1 TCTTAAATAAGATAAACATGAATACTCATACTATTCCTCATT-CTTTCTTGATTAGGCACCATAA
* * * * * *
1282251 ACTTACTCTTCTCATTAGGATACACGATACTGGTGCATTGGTTTCGTAAGAAAGGCTTTTTTCCC
65 ACTTAGTCTTCACCTTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCC
* * * * * * *
1282316 ACCAATTTTTGTAATGTCTATGTTCGTGCTTCAAATGAGCCAAACGAGGATTCTAGTATTAATCT
130 TCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCAAGTATTTATCT
* * * *
1282381 TCATTCATTTTGTGATTCA-GCGCTATAAACACATTCTCCTCATTAGAATAACTTATATTGATGA
195 TCTTTCATTTTGTGATT-ATGCACTATAAACACATTCTCCTCATTAGAATAAATAATATTGATGA
* * * *
1282445 TTTTCTTTTGCGTGGAAATATTTTCTATGCCCTATTTTACTTAAAATCAATGTTCACCCCTTAAA
259 TTTTCTTTTGCGTGGAAATCTTTTCTATGCCATATTTTGCTTAAAATCAATGTTCATCCCTTAAA
* * * *
1282510 TAAGACAAGGATCGATTGTCGTAACAGTCTCCATTCTTTTGAAGATTGGGAACCTAAAACACATT
324 CAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATT
*
1282575 CCCTTCATTAGGGTACTTGACATTAATGCTTTGGTGTCG-TAGAAAAAGCTTTTCTTTCCACCAT
389 CCCTTCATTAGGGTACTTGACATTAATGCTTTGGTGTCGCAAG-AAAAGCTTTTCTTTCCACCAT
1282639 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACATATACTCTTCCCCATT
453 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACATATACTCTTCCCCATT
* *
1282704 CTTTTCACGATTAGGCACCATAAACTTAGTCTTCTCAATACGATACACGATATTGGTGCTTTGGA
518 CTTTTCACGATTAGGCACCATAAACTTAGTCTTCTCAATACAATACACGATATTGGTGCTTTGTA
*
1282769 TTCTTAAGAAAACCATTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATAAGACA
583 TTCTTAAGAAAACC-TTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACA
* *
1282834 GACATGGATTCCAGTATTGATCTTTATTCATTTTGTGATTAGGCACTATGAACACATCCCCTACA
647 AACATGGATTCCAGTATTGATCTTTATTCATTTTGTGATTAGGCACTATGAACACATCCTCTACA
1282899 CTAGGATAAATGATATTGATGATTTTCTTTTGCATGGCAAACTTTTCTTTGTCCTATTTTCCTTA
712 CTAGGATAAATGATATTGATGATTTTCTTTTGCATGGCAAACTTTTCTTTGTCCTATTTTCCTTA
*
1282964 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGACTCTCGTAATGGTCTCCATTCTTTTCAG
777 AAAGCAAAGTTCATCCCTTAAATAAGACAAGCATCGACTCTCGTAATGGTCTCCATTCTTTTCAG
1283029 GATTGGGAACCAAAAACACATTCTCTTCATTAGGATACTTGACATTGATGCTTTGGTACTGCTAG
842 GATTGGGAACCAAAAACACATTCTCTTCATTAGGATACTTGACATTGATGCTTTGGTACTGCTAG
* *
1283094 AAAAGCCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTCGAC
907 AAAAGCCCTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGAC
*
1283138 TCTTAAATAAGATGAACATGAATACTCATACTATTCCTCATTCTTTTCTTGATTAGGCACCATAA
1 TCTTAAATAAGATAAACATGAATACTCATACTATTCCTCATTC-TTTCTTGATTAGGCACCATAA
* *
1283203 ACTTAGTCTTCACCTTAAGATACACGATATTGGTGCTTTGGTTTTTTAAGAAAGGCTTTTTTCCC
65 ACTTAGTCTTCACCTTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCC
* *
1283268 TCCAATTTTTGTAAACTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCAAGAATTTATCT
130 TCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCAAGTATTTATCT
* * *
1283333 TCTTTCATTTTGTAATTATGCACTATAAACACATTCTCCTCGTTAGGATAAATAATATTGATGAT
195 TCTTTCATTTTGTGATTATGCACTATAAACACATTCTCCTCATTAGAATAAATAATATTGATGAT
* * * *
1283398 TTTCTTTTGCGTGGAAATCTTTTCTACGTCATATTTTGCATAAAATCAATTTTCATCCCTTAAAC
260 TTTCTTTTGCGTGGAAATCTTTTCTATGCCATATTTTGCTTAAAATCAATGTTCATCCCTTAAAC
*
1283463 AAGACATGGATCGATTCTCGTAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTC
325 AAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTC
* *
1283528 CTTTCATTAGGGTACTTGACATTAATGCTTTGGTGTCGCAAGAAAAGTTTTTCTTTCCACCATTT
390 CCTTCATTAGGGTACTTGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
1283593 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACATATACTCTTCCCCATTCT
455 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACATATACTCTTCCCCATTCT
*
1283658 TTTCACGATTACGCACCATAAACTTAGTCTTCTCAATACAATACACGATATTGGTGCTTTGTATT
520 TTTCACGATTAGGCACCATAAACTTAGTCTTCTCAATACAATACACGATATTGGTGCTTTGTATT
1283723 CTTAAGAAAACCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAA
585 CTTAAGAAAACC-TTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAA
* *
1283788 CATGGATTCCAGTATTGATATTTATTCATTTTGTGATTAGGCACTCTGAACACATCCTCTACACT
649 CATGGATTCCAGTATTGATCTTTATTCATTTTGTGATTAGGCACTATGAACACATCCTCTACACT
* * *
1283853 AGGATAAATGATCTTGATGATTTTCTTTTGCGTGGTAAACTTTTCTTTGTCCTATTTTCCTTAAA
714 AGGATAAATGATATTGATGATTTTCTTTTGCATGGCAAACTTTTCTTTGTCCTATTTTCCTTAAA
1283918 AGCAAAGTTCATCCCTTAAATAAGACAAGCATCGACTCTCGTAATGGTCTCCATTCTTTTCAGGA
779 AGCAAAGTTCATCCCTTAAATAAGACAAGCATCGACTCTCGTAATGGTCTCCATTCTTTTCAGGA
*
1283983 TTGGGAACCAAAAACACATTCTCTTCATTAGGATACTTGACATTGATGCTTTGGTGCTGCTAGAA
844 TTGGGAACCAAAAACACATTCTCTTCATTAGGATACTTGACATTGATGCTTTGGTACTGCTAGAA
1284048 AAGCCCTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGAC
909 AAGCCCTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGAC
*
1284090 TCTTAAATAAGGTAAACATGAATACTCATACTATTCCTCATTCTTTCTTGATTAGGCACCATAAA
1 TCTTAAATAAGATAAACATGAATACTCATACTATTCCTCATTCTTTCTTGATTAGGCACCATAAA
* *
1284155 CCTAGTCTTCGCCTTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTTCCC
66 CTTAGTCTTCACCTTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGC-TTTTTTCCC
* *
1284220 TCAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCAAGTATTTATCT
130 TCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCAAGTATTTATCT
1284285 TCTTTCATTTTGTGATTATGCACTATAAACACATTCTCCTCATTAGAATAAATAATATTGATGAT
195 TCTTTCATTTTGTGATTATGCACTATAAACACATTCTCCTCATTAGAATAAATAATATTGATGAT
1284350 TTTCTTTTGCGTGGAAATCTTTTCTATGCCATATTTTGCTTAAAATCAATGTTCATCCCTTAAAC
260 TTTCTTTTGCGTGGAAATCTTTTCTATGCCATATTTTGCTTAAAATCAATGTTCATCCCTTAAAC
* *
1284415 AAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTTAGGATTTGGAACCTAAAACACATTC
325 AAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTC
* * * * * *
1284480 CCTTCATTAGGATACTTGACATTGATGCTTTGGTGTGGCAAGAAAGGCTTTTCTTTTCGCCATTT
390 CCTTCATTAGGGTACTTGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * * *
1284545 TTGATAGAATCAAATTTTGCCTCTTAAATAAGACAAATATGAATAC-TCATACTAATT-CCCATT
455 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAT-ATACT-CTTCCCCATT
* * ** * * * *
1284608 CTTTTCGA-GATTAGGCACTACAAACGCAGTCTTCTC-ATA-AGGATGCATGATATTGATTCTTT
518 CTTTTC-ACGATTAGGCACCATAAACTTAGTCTTCTCAATACA--ATACACGATATTGGTGCTTT
* ** ** * * * * *
1284670 GGTTTTGC-T-AGAAAGGCTTTCCCTCTACCAATTTTTGTAAAGTTTATGTTTGTGCCTTAAATG
580 -GTATT-CTTAAGAAAACCTTTTTCTC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATA
* * * * * * *
1284733 AGACAAACAAGGATTCTAGTATTAATCTTCATTCATTTTGTGATTCGGCACTATGAACATATTCT
642 AGACAAACATGGATTCCAGTATTGATCTTTATTCATTTTGTGATTAGGCACTATGAACACATCCT
**
1284798 C-ATCGTTAGGATAAATGATATTGATGAT
707 CTA-CACTAGGATAAATGATATTGATGAT
1284826 AGTCTCCATT
Statistics
Matches: 1548, Mismatches: 127, Indels: 26
0.91 0.07 0.02
Matches are distributed among these distances:
950 1 0.00
951 86 0.06
952 1450 0.94
953 10 0.01
954 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.37
Consensus pattern (950 bp):
TCTTAAATAAGATAAACATGAATACTCATACTATTCCTCATTCTTTCTTGATTAGGCACCATAAA
CTTAGTCTTCACCTTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCT
CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCAAGTATTTATCTT
CTTTCATTTTGTGATTATGCACTATAAACACATTCTCCTCATTAGAATAAATAATATTGATGATT
TTCTTTTGCGTGGAAATCTTTTCTATGCCATATTTTGCTTAAAATCAATGTTCATCCCTTAAACA
AGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTCAGGATTGGGAACCTAAAACACATTCC
CTTCATTAGGGTACTTGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACATATACTCTTCCCCATTCTT
TTCACGATTAGGCACCATAAACTTAGTCTTCTCAATACAATACACGATATTGGTGCTTTGTATTC
TTAAGAAAACCTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACA
TGGATTCCAGTATTGATCTTTATTCATTTTGTGATTAGGCACTATGAACACATCCTCTACACTAG
GATAAATGATATTGATGATTTTCTTTTGCATGGCAAACTTTTCTTTGTCCTATTTTCCTTAAAAG
CAAAGTTCATCCCTTAAATAAGACAAGCATCGACTCTCGTAATGGTCTCCATTCTTTTCAGGATT
GGGAACCAAAAACACATTCTCTTCATTAGGATACTTGACATTGATGCTTTGGTACTGCTAGAAAA
GCCCTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGAC
Found at i:1285157 original size:388 final size:387
Alignment explanation
Indices: 1284439--1285209 Score: 1256
Period size: 388 Copynumber: 2.0 Consensus size: 387
1284429 TTCTCGTAAC
* * * ** *
1284439 AGTCTCCATTCTTTTTAGGATTTGGAACCTAAAACACATTCCCTTCATTAGGATACTTGACATTG
1 AGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACAGTG
* * * *
1284504 ATGCTTTGGTGTGGCAAGAAAGGCTTTTCTTTTCGCCATTTTTGATAGAATCAAATTTTGCCTCT
66 ATGCTTTGGTGTCGCAAGAAAGGCTTTTCTTTTCACCATTTTTGAAAGAATCAAAGTTTGCCTCT
*
1284569 TAAATAAGACAAATATGAATACTCATACTAATTCCCATTCTTTTCGAGATTAGGCACTACAAACG
131 TAAATAAGACAAATATGAATACTCATACTAATTCCCATTCTTTTCGAGATTAGGCACCACAAACG
* *
1284634 CAGTCTTCTCATAAGGATGCATGATATTGATTCTTTGGTTTTGCTAGAAAGGCTTTCCCTCTACC
196 CAGTCTTCTCATAAGGATGCACGATATTGATTCTTTGGTTTTGCTAGAAAGGCTTTCCCCCTACC
* * * *
1284699 AATTTTTGTAAAGTTTATGTTTGTGCCTTAAATGAGACAAACAAGGATTCTAGTATTAATCTTCA
261 AATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGACAAACAAGGATTCTAGTATTAATCTTCA
*
1284764 TTCATTTTGTGATTCGGCACTATGAACATATTCTCATCGTTAGGATAAATGATATTGATGAT
326 TTCATTTTGTGATTAGGCACTATGAACATATTCTCATCGTTAGGATAAATGATATTGATGAT
*
1284826 AGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACACGACAGTG
1 AGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACAGTG
*
1284891 ATGCTTTGGTGTCGCAAGAAAGGCTTTTCTTTTTCACCATTTTTTTAAAGAA-CAAAGTTTGCCT
66 ATGCTTTGGTGTCGCAAGAAAGGCTTTTC-TTTTCACCA-TTTTTGAAAGAATCAAAGTTTGCCT
* * * *
1284955 CTTAAATAAGACAAATATTAATAGTCATACTAATTGCCATTCTTTTCGAGATTAGGCACCATAAA
129 CTTAAATAAGACAAATATGAATACTCATACTAATTCCCATTCTTTTCGAGATTAGGCACCACAAA
*
1285020 TGCAGTCTTCTCATAAGGATGCACGATATTGATTCTTTGGTTTTGCTAGAAAGGCTTTCCCCCTA
194 CGCAGTCTTCTCATAAGGATGCACGATATTGATTCTTTGGTTTTGCTAGAAAGGCTTTCCCCCTA
* *
1285085 CCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTT
259 CCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGACAAACAAGGATTCTAGTATTAATCTT
* *
1285150 TATTCATTTTGTGATTAGGCACTATGAACATATTCTCCTCGTTAGGATAAATGATATTGA
324 CATTCATTTTGTGATTAGGCACTATGAACATATTCTCATCGTTAGGATAAATGATATTGA
1285210 GGATTTTTTT
Statistics
Matches: 353, Mismatches: 29, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
387 86 0.24
388 257 0.73
389 10 0.03
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (387 bp):
AGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACAGTG
ATGCTTTGGTGTCGCAAGAAAGGCTTTTCTTTTCACCATTTTTGAAAGAATCAAAGTTTGCCTCT
TAAATAAGACAAATATGAATACTCATACTAATTCCCATTCTTTTCGAGATTAGGCACCACAAACG
CAGTCTTCTCATAAGGATGCACGATATTGATTCTTTGGTTTTGCTAGAAAGGCTTTCCCCCTACC
AATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGACAAACAAGGATTCTAGTATTAATCTTCA
TTCATTTTGTGATTAGGCACTATGAACATATTCTCATCGTTAGGATAAATGATATTGATGAT
Found at i:1285629 original size:863 final size:861
Alignment explanation
Indices: 1283964--1285686 Score: 2261
Period size: 863 Copynumber: 2.0 Consensus size: 861
1283954 TCTCGTAATG
* ** *
1283964 GTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCTCTTCATTAGGATACTTGACATTGA
1 GTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACAGTGA
* *
1284029 TGCTTTGGTGCTGCTAGAAAAGCCCTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGACTCTT
66 TGCTTTGGTGCTGCAAGAAAAGCCCTTCTTTCCACCGTTTTTGAAAGAATCAAAGTTCGACTCTT
** **
1284094 AAATAAGGTAAACATGAATACTCATACTATTCCTCATTCTTTCTTGATTAGGCACCATAAACCTA
131 AAATAAGACAAACATGAATACTCATACTATTCCTCATTCTTTCGAGATTAGGCACCATAAACCTA
* * * **
1284159 GTCTTCGCCTTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTTCCCTCAA
196 GTCTTCGCATAAGGATACACGATATTGATGCTTTGGTTTCTTAAGAAAGGC-TTTTCCCCCTCAA
*
1284224 ATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCAAGTATTTATCTTCTT
260 ATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCAAGTATTGATCTTCTT
* *
1284289 TCATTTTGTGATTATGCACTATAAACACATTCTCCTCATTAGAATAAATAATATTGATGATTTTC
325 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGAATAAATAATATTGAGGATTTTC
* * *
1284354 TTTTGCGTGGAAATCTTTTCTATGCCATATTTTGCTTAAAATCAATGTTCATCCCTTAAACAAGA
390 TTTTACGTGGAAATCTTTTCTATGCCATATTTTCCTTAAAATCAAAGTTCATCCCTTAAACAAGA
* ** * * *
1284419 CAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTTAGGATTTGGAACCTAAAACACATTCCCTT
455 CAAGCATCGATTCTCAAAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTT
* * *
1284484 CATTAGGATACTTGACATTGATGCTTTGGTGTGGCAAGAAAGGCTTTTCTTTTCGCCATTTTTGA
520 CATTAGGATACTTGACATTGATGCTTTGGTGTGGCAAGAAAAGCTTTTCTTTCCACCATTTTTGA
* * ** *
1284549 TAGAATCAAATTTTGCCTCTTAAATAAGACAAATATGAATACTCATACTAATTCCCATTCTTTTC
585 TAAAATCAAAGTTCACCTCTTAAATAAGACAAACATGAATACTCATACTAATTCCCATTCTTTTC
* * *
1284614 GAGATTAGGCACTACAAACGCAGTCTTCTCATAAGGATGCATGATATTGATTCTTTGGTTTTGCT
650 GAGATTAGGCACTACAAACGCAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTT-CT
* * * ** *
1284679 AGAAAGGCTTTCCCTCTACCAATTTTTGTAAAGTTTATGTTTGTGCCTTAAATGAGACAAACAAG
714 AGAAAGGCTTTCCCTCGACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAAG
* ** * * *
1284744 GATTCTAGTATTAATCTTCATTCATTTTGTGATTCGGCACTATGAACATATTCTCATCGTTAGGA
779 GATTCTAGTATTAATCTTCATTCATTTTGTAATTAAGCACTATAAACACATTCTCATCATTAGGA
1284809 TAAATGATATTGATGATA
844 TAAATGATATTGATGATA
*
1284827 GTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACACGACAGTGA
1 GTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACAGTGA
* ** * * * * *
1284892 TGCTTTGGTG-TCGCAAGAAAGGCTTTTCTTTTTCACCATTTTTTTAAAGAA-CAAAGTTTGCCT
66 TGCTTTGGTGCT-GCAAGAAAAGCCCTTC-TTTCCACC-GTTTTTGAAAGAATCAAAGTTCGACT
* * * *
1284955 CTTAAATAAGACAAATATTAATAGTCATACTAATTGC-CATTCTTTTCGAGATTAGGCACCATAA
128 CTTAAATAAGACAAACATGAATACTCATACT-ATTCCTCATTC-TTTCGAGATTAGGCACCATAA
* * * *
1285019 ATGC-AGTCTTCTCATAAGGATGCACGATATTGATTCTTTGGTTT-TGCT-AGAAAGGC-TTTCC
191 A-CCTAGTCTTCGCATAAGGATACACGATATTGATGCTTTGGTTTCT--TAAGAAAGGCTTTTCC
* * *
1285080 CCCTACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGCCAAACAAGGATTCTAGTATTG
253 CCCT-CAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCAAGTATTG
* * * * *
1285145 ATCTT-TATTCATTTTGTGATTAGGCACTATGAACATATTCTCCTCGTTAGGATAAATGATATTG
317 ATCTTCT-TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGAATAAATAATATTG
* * *
1285209 AGGATTTT-TTTTACGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTT
381 AGGATTTTCTTTTACGTGGAAATCTTTTCTATGCCATATTTTCCTTAAAATCAAAGTTCATCCCT
* *
1285273 TAAATAAGACAAGCATCGATTCTCAAAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACA
446 TAAACAAGACAAGCATCGATTCTCAAAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACA
* * *
1285338 CATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGCT-TCTAGAAAAGCTTTTGTTTCCA
511 CATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTG-TGGCAAGAAAAGCTTTTCTTTCCA
* * * * **
1285402 TCGTTTTTGATAAAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCAT-GTTGTTGC
575 CCATTTTTGATAAAATCAAAGTTCACCTCTTAAATAAGACAAACATGAATACTCATACTAATT-C
* ** *
1285466 CCATTCTTTTC-ATGATTAGGCACTATAAACTTAGTCTTCTCACT-AGGATACACGATATTGGTG
639 CCATTCTTTTCGA-GATTAGGCACTACAAACGCAGTCTTCTCA-TAAGGATACACGATATTGATG
** *
1285529 CTTTGGTTTAT-TAAGAAAGGCTTT-TTTCCGACCTATTTTTGTAAAGTCTAAGTTCATGCCTCA
702 CTTTGGTTT-TCT-AGAAAGGCTTTCCCT-CGACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * *
1285592 ATTGAGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTAATTAAGCACTATAAACACA
764 AATGAGACAAACAAGGATTCTAGTATTAATCTTCATTCATTTTGTAATTAAGCACTATAAACACA
* *
1285657 TTCTCCTCATTAGGATAAATGATGTTGATG
829 TTCTCATCATTAGGATAAATGATATTGATG
1285687 TTTTTTTTTT
Statistics
Matches: 742, Mismatches: 101, Indels: 34
0.85 0.12 0.04
Matches are distributed among these distances:
862 7 0.01
863 486 0.65
864 171 0.23
865 76 0.10
866 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.37
Consensus pattern (861 bp):
GTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACAGTGA
TGCTTTGGTGCTGCAAGAAAAGCCCTTCTTTCCACCGTTTTTGAAAGAATCAAAGTTCGACTCTT
AAATAAGACAAACATGAATACTCATACTATTCCTCATTCTTTCGAGATTAGGCACCATAAACCTA
GTCTTCGCATAAGGATACACGATATTGATGCTTTGGTTTCTTAAGAAAGGCTTTTCCCCCTCAAA
TTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCAAGTATTGATCTTCTTT
CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGAATAAATAATATTGAGGATTTTCT
TTTACGTGGAAATCTTTTCTATGCCATATTTTCCTTAAAATCAAAGTTCATCCCTTAAACAAGAC
AAGCATCGATTCTCAAAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTC
ATTAGGATACTTGACATTGATGCTTTGGTGTGGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
AAAATCAAAGTTCACCTCTTAAATAAGACAAACATGAATACTCATACTAATTCCCATTCTTTTCG
AGATTAGGCACTACAAACGCAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTCTAG
AAAGGCTTTCCCTCGACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAAGGA
TTCTAGTATTAATCTTCATTCATTTTGTAATTAAGCACTATAAACACATTCTCATCATTAGGATA
AATGATATTGATGATA
Found at i:1286028 original size:477 final size:475
Alignment explanation
Indices: 1284824--1286950 Score: 2571
Period size: 477 Copynumber: 4.5 Consensus size: 475
1284814 GATATTGATG
* * *
1284824 ATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACACGACAG
1 ATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACAT
* * * * *
1284889 TGATGCTTTGGTGTCGCAAGAAAGGCTTTTCTTTTTCACCATTTTTTTAAAGAA-CAAAGTTTGC
66 TGATGCTTTGGTGTCGTAAGAAAAGC-TTT-TTTTTC-CCA-TTTTTGATAGAATCAAAGTTTGT
* * * * *
1284953 CTCTTAAATAAGACAAATATTAATAGTCATACTAATT-GCCATTCTTTTCGA-GATTAGGCACCA
127 CTCTTAAATAAGACAAACATGAATACTCATACT-CTTCCCCATTCTTTTC-ACGATTAGGCACCA
* * * * *
1285016 TAAA-TGCAGTCTTCTCATAAGGATGCACGATATT-GATTCTTTGGTTT-TGCT-AGAAAGGC-T
190 TAAACT-TAGTCTTCTCATTAGGATACATGATATTGGA-GCTTTGGTTTCT--TAAGAAAGGCTT
** *
1285076 TTCCCCCTACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGCCAAACAAGGATTCTAGT
251 TTTTCCC-ACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCTAGT
* * * * * * *
1285141 ATTGATCTTTATTCATTTTGTGATTAGGCACTATGAACATATTCTCCTCGTTAGGAT-AAATGAT
315 ATTTATCTTCATTCATTTTGTAATTACGCACTATAAACACATTCTCCTCATTAGGATAAAATGAT
* * *
1285205 ATTGAGGA-TTTTTTTTACGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
380 ATTGATGATTTTTTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * *
1285269 CCTTTAAATAAGACAAGCATCGATTCTCAAA
445 CCCTTAAATAAGACAAACATCGATTCTCATA
**
1285300 ATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACTTGACAT
1 ATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACAT
* * * **
1285365 TGATGCTTTGGTGCTTC-T-AGAAAAGCTTTTGTTTCCATCGTTTTTGATAAAATCAAAGTTCAT
66 TGATGCTTTGGTG--TCGTAAGAAAAGCTTTTTTTTCC--CATTTTTGATAGAATCAAAGTTTGT
** * * * *
1285428 CTCTTAAATAAGACAAACATGAATACTCATGTTGTTGCCCATTCTTTTCATGATTAGGCACTATA
127 CTCTTAAATAAGACAAACATGAATACTCATACTCTTCCCCATTCTTTTCACGATTAGGCACCATA
* * * *
1285493 AACTTAGTCTTCTCACTAGGATACACGATATTGGTGCTTTGGTTTATTAAGAAAGGCTTTTTTCC
192 AACTTAGTCTTCTCATTAGGATACATGATATTGGAGCTTTGGTTTCTTAAGAAAGGCTTTTTTCC
* * *
1285558 GACCTATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGAGCCAAACAAGGATTCTAGTATTTATC
257 CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCTAGTATTTATC
* *
1285623 TTCATTCATTTTGTAATTAAGCACTATAAACACATTCTCCTCATTAGGAT-AAATGATGTTGATG
322 TTCATTCATTTTGTAATTACGCACTATAAACACATTCTCCTCATTAGGATAAAATGATATTGATG
* * * * * *
1285687 TTTTTTTTTTTTGCATGAAAATCTTTTCCTTGCCATATTTTCCTTAAAATCAACGTACATCCCTT
387 --ATTTTTTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
* *
1285752 AAATAACACAAACATTGATTCTCATA
450 AAATAAGACAAACATCGATTCTCATA
* * * * *
1285778 ATAGTCTCCATTCTTTTCTGGATTTGGAACCAAAAACATATTGCCTTCACTAGGATACAAGACAT
1 ATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACAT
*
1285843 TGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCGCCATTTTTGATAGAATTAAAGTTTGTCTC
66 TGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTC-CCATTTTTGATAGAATCAAAGTTTGTCTC
* * *
1285908 TTAAATATGGCAAACATGAATACACATACTCTTCCCCATTCTTTTCACGATTAGGCACCATAAAC
130 TTAAATAAGACAAACATGAATACTCATACTCTTCCCCATTCTTTTCACGATTAGGCACCATAAAC
1285973 TTAGTCTTCTCATTAGGATACATGATATTGGAGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCAC
195 TTAGTCTTCTCATTAGGATACATGATATTGGAGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCAC
* * * * *
1286038 CAATTTTTTTAAAGTCTAAGTTCATGCCACTAATAAGCCAAACAAGGATTCTAGTTTTTATCTTC
260 CAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCTAGTATTTATCTTC
* * * **
1286103 ATTCATTTTGTGATTACGCACTATAAACACATTCTCCTTATTAGG-TGAAATGATGCTGATGATT
325 ATTCATTTTGTAATTACGCACTATAAACACATTCTCCTCATTAGGATAAAATGATATTGATGATT
* * *
1286167 TTTTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAATCAAAGTCCATCTCTT-AATA
390 TTTTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
*
1286230 AGA-AAAGCATTGATTCTTC-TA
455 AGACAAA-CATCGATTC-TCATA
*
1286251 ATAGTCACCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATA-AATGACA
1 ATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAA-GACA
* ** * * *
1286315 TTGATGCTTCGGTGTCACAAGAAAAGCTCTTTTTTCCATTATTTTTTTATAGAATCAAAGTTTGC
65 TTGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCC--CA-TTTTTGATAGAATCAAAGTTTG-
** * * *
1286380 CTCTCAAAAATAAGACAAACATGAATACAT-ATACTCTTCCCCATTCTTTCCCCGATTAGGGACC
126 -TCTCTTAAATAAGACAAACATGAATAC-TCATACTCTTCCCCATTCTTTTCACGATTAGGCACC
* * * *
1286444 ACAAACTTAGTCTTCTCATTAGGATACATGATATTGGTGCTTTGGTTTCTTAAAAAAAAGCTTTT
189 ATAAACTTAGTCTTCTCATTAGGATACATGATATTGGAGCTTTGGTTTCTT-AAGAAAGGCTTTT
* * *
1286509 TTCCCACCAATTTTTGTAAAGTCTAAGCTCGTGCCTCAAATGAGCCAAACAAGGATTTTAGTATT
253 TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCTAGTATT
* *
1286574 TATCTT-ATTCATTTTG-AGATTTCGCACTATAAACACATTCTCCTCATTGGGATAAAAT-ATAT
318 TATCTTCATTCATTTTGTA-ATTACGCACTATAAACACATTCTCCTCATTAGGATAAAATGATAT
* * *
1286636 TGATGATTTTATTTTGCGTGGAAAA-CTTTTCTTTGTCCTATTTTTCTTAAAATCAAAGTTCATC
382 TGATGATTTTTTTTTGCGT-GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * *
1286700 CCTTTAATAAGACAAGCATCGACTCTCGTA
446 CCTTAAATAAGACAAACATCGATTCTCATA
* * *
1286730 ATGGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCTCTTCATTAGGATACATGACAT
1 ATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACAT
* * * * * *
1286795 TGATGCTTTGGTG-CTGCT-AGAAAAGCCATTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGA
66 TGATGCTTTGGTGTC-G-TAAGAAAAG-CTTTTTTTTC-CCATTTTTGATAGAATCAAAGTTTGT
* * ** **
1286858 CTCTTAAATAAGACAAACATGCATACTCATACTGTTCCCCATTCTCGTCTTGATTAGGCACCATA
127 CTCTTAAATAAGACAAACATGAATACTCATACTCTTCCCCATTCTTTTCACGATTAGGCACCATA
* *
1286923 AACTTAGTCTTCACCTTAGGATAC-TGAT
192 AACTTAGTCTTCTCATTAGGATACATGAT
1286951 GAAAACCAAG
Statistics
Matches: 1428, Mismatches: 181, Indels: 85
0.84 0.11 0.05
Matches are distributed among these distances:
472 6 0.00
473 105 0.07
474 37 0.03
475 285 0.20
476 166 0.12
477 437 0.31
478 287 0.20
479 95 0.07
480 9 0.01
481 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (475 bp):
ATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACAT
TGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCCCATTTTTGATAGAATCAAAGTTTGTCTCT
TAAATAAGACAAACATGAATACTCATACTCTTCCCCATTCTTTTCACGATTAGGCACCATAAACT
TAGTCTTCTCATTAGGATACATGATATTGGAGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACC
AATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAGGATTCTAGTATTTATCTTCA
TTCATTTTGTAATTACGCACTATAAACACATTCTCCTCATTAGGATAAAATGATATTGATGATTT
TTTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
GACAAACATCGATTCTCATA
Found at i:1286687 original size:952 final size:948
Alignment explanation
Indices: 1284824--1286950 Score: 2734
Period size: 952 Copynumber: 2.2 Consensus size: 948
1284814 GATATTGATG
* * *
1284824 ATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACACGACAG
1 ATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATT-CCTTCATTAGGATACAAGACAT
* * * * *
1284889 TGATGCTTTGGTGTCGCAAGAAAGGCTTTTCTTTTTCACCATTTTTTTAAAGAA-CAAAGTTTGC
65 TGATGCTTTGGTGTCGTAAGAAAAGC-TTT-TTTTTCACCA-TTTTTGATAGAATCAAAGTTTGA
* * * *
1284953 CTCTTAAATAAGACAAATATTAATAGTCATACTAATT-GCCATTCTTTTCGAGATTAGGCACCAT
127 CTCTTAAATAAGACAAACATGAATACTCATACT-ATTCCCCATTCTTTTC-AGATTAGGCACCAT
* * * * *
1285017 AAA-TGCAGTCTTCTCATAAGGATGCACGATATTGATTCTTTGGTTTTGCTAGAAAGGCTTTCCC
190 AAACT-TAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTT-CTAGAAAGGCTTTCCC
* * *
1285081 CCTACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGA
253 CCTACCAATTTTTGTAAAGTCTAAGTTCATGCCACAAATAAGCCAAACAAGGATTCTAGTATTGA
* * * * * *
1285146 TCTTTATTCATTTTGTGATTAGGCACTATGAACATATTCTCCTCGTTAGGATAAATGATATTGAG
318 TCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGAG
*
1285211 GATTTTTTTTACGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAA
383 GATTTTTTTTACGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTCCATCCTTTAA
* *
1285276 ATAAGACAAGCATCGATTCTCAAAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACAT
448 ATAAGAAAAGCATCGATTCTCAAAATAGTCACCATTCTTTTCAGGATTGGGAACCAAAAACACAT
** * * * *
1285341 TCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGCTTCTAGAAAAGCTTTTGTTTCCATCGT
513 TCCCTTCATTAGGATAAATGACATTGATGCTTCGGTGCTACAAGAAAAGCTTTTGTTTCCATAGT
** ** * *
1285406 TTTTGATAAAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCATGTTGTTGCCCATT
578 TTTTGATAAAATCAAAGTTCATCTCAAAAATAAGACAAACATGAATACTCATACTCTTCCCCATT
* * * *
1285471 CTTTTCATGATTAGGCACTATAAACTTAGTCTTCTCACTAGGATACACGATATTGGTGCTTTGGT
643 CTTTCCACGATTAGGCACCACAAACTTAGTCTTCTCACTAGGATACACGATATTGGTGCTTTGGT
* * * * * *
1285536 TTATTAAGAAAGGCTTTTTTCCGACCTATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGAGCCA
708 TTATTAAAAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGCTCATGCCTCAAATGAGCCA
1285601 AACAAGGATTCTAGTATTTATCTTCATTCATTTTGTAATTAAGCACTATAAACACATTCTCCTCA
773 AACAAGGATTCTAGTATTTATCTTCATTCATTTTGTAATTAAGCACTATAAACACATTCTCCTCA
* * *
1285666 TTAGGATAAATGATGTTGATGTTTTTTTTTTTTGCATGAAAATCTTTTCCTTGCCATATTTTCCT
838 TTAGGATAAATGATATTGATG-TATTTTATTTTGCATGAAAATCTTTTCCTTGCCATATTTTCCT
* * *
1285731 TAAAATCAACGTACATCCCTTAAATAACACAAACATTGATTCTCATA
902 TAAAATCAAAGTACATCCCTTAAATAACACAAACATCGACTCTCATA
* * * *
1285778 ATAGTCTCCATTCTTTTCTGGATTTGGAACCAAAAACATATTGCCTTCACTAGGATACAAGACAT
1 ATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATT-CCTTCATTAGGATACAAGACAT
* * *
1285843 TGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCGCCATTTTTGATAGAATTAAAGTTTGTCTC
65 TGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCACCATTTTTGATAGAATCAAAGTTTGACTC
* * * *
1285908 TTAAATATGGCAAACATGAATACACATACTCTTCCCCATTCTTTTCACGATTAGGCACCATAAAC
130 TTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCA-GATTAGGCACCATAAAC
**
1285973 TTAGTCTTCTCATTAGGATACATGATATTGGA-GCTTTGG-TTTCTTAAGAAAGGCTTTTTTCCC
194 TTAGTCTTCTCATTAGGATACATGATATT-GATGCTTTGGTTTTC-T-AGAAAGGC-TTTCCCCC
* * * *
1286036 -ACCAATTTTTTTAAAGTCTAAGTTCATGCCACTAATAAGCCAAACAAGGATTCTAGTTTTTATC
255 TACCAATTTTTGTAAAGTCTAAGTTCATGCCACAAATAAGCCAAACAAGGATTCTAGTATTGATC
* * *
1286100 TTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTTATTAGG-TGAAATGATGCTGATG
320 TTCATTCATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGAT-AAATGATACTGAGG
*
1286164 ATTTTTTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAATCAAAGTCCAT-CTCTT-
384 A-TTTTTTTTACGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTCCATCCT-TTA
* *
1286226 AATAAGAAAAGCATTGATTCTTC-TAATAGTCACCATTCTTTTCAGGATTGGGAACCAAAAACAC
447 AATAAGAAAAGCATCGATTC-TCAAAATAGTCACCATTCTTTTCAGGATTGGGAACCAAAAACAC
1286290 ATTCCCTTCATTAGGATAAATGACATTGATGCTTCGGTG-TCACAAGAAAAGCTCTTT-TTTCCA
511 ATTCCCTTCATTAGGATAAATGACATTGATGCTTCGGTGCT-ACAAGAAAAGCT-TTTGTTTCCA
* * * *
1286353 TTATTTTTTTATAGAATCAAAGTTTGCCTCTCAAAAATAAGACAAACATGAATACAT-ATACTCT
574 -TAGTTTTTGATAAAATCAAAG-TT-CATCTCAAAAATAAGACAAACATGAATAC-TCATACTCT
* * * *
1286417 TCCCCATTCTTTCCCCGATTAGGGACCACAAACTTAGTCTTCTCATTAGGATACATGATATTGGT
635 TCCCCATTCTTTCCACGATTAGGCACCACAAACTTAGTCTTCTCACTAGGATACACGATATTGGT
* *
1286482 GCTTTGGTTTCTTAAAAAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGCTCGTGCCTCA
700 GCTTTGGTTTATT-AAAAAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGCTCATGCCTCA
* **
1286547 AATGAGCCAAACAAGGATTTTAGTATTTATCTT-ATTCATTTTG-AGATTTCGCACTATAAACAC
764 AATGAGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTA-ATTAAGCACTATAAACAC
* * *
1286610 ATTCTCCTCATTGGGATAAAAT-ATATTGATG-ATTTTATTTTGCGTGGAAAA-CTTTTCTTTGT
828 ATTCTCCTCATTAGGAT-AAATGATATTGATGTATTTTATTTTGCAT-GAAAATCTTTTCCTTG-
* * * * * *
1286672 CC-TATTTTTCTTAAAATCAAAGTTCATCCCTTTAATAAGACAAGCATCGACTCTCGTA
890 CCATATTTTCCTTAAAATCAAAGTACATCCCTTAAATAACACAAACATCGACTCTCATA
* *
1286730 ATGGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCTCTTCATTAGGATACATGACAT
1 ATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTC-CTTCATTAGGATACAAGACAT
* * * * *
1286795 TGATGCTTTGGTG-CTGCT-AGAAAAGCCATTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGA
65 TGATGCTTTGGTGTC-G-TAAGAAAAG-CTTTTTTTTCACCATTTTTGATAGAATCAAAGTTTGA
* * ** *
1286858 CTCTTAAATAAGACAAACATGCATACTCATACTGTTCCCCATTCTCGTCTTGATTAGGCACCATA
127 CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTC-AGATTAGGCACCATA
* *
1286923 AACTTAGTCTTCACCTTAGGATAC-TGAT
191 AACTTAGTCTTCTCATTAGGATACATGAT
1286951 GAAAACCAAG
Statistics
Matches: 1019, Mismatches: 126, Indels: 58
0.85 0.10 0.05
Matches are distributed among these distances:
950 2 0.00
951 131 0.13
952 406 0.40
953 170 0.17
954 229 0.22
955 81 0.08
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (948 bp):
ATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCTTCATTAGGATACAAGACATT
GATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCACCATTTTTGATAGAATCAAAGTTTGACTCT
TAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAGATTAGGCACCATAAACTT
AGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTTCTAGAAAGGCTTTCCCCCTACCAA
TTTTTGTAAAGTCTAAGTTCATGCCACAAATAAGCCAAACAAGGATTCTAGTATTGATCTTCATT
CATTTTGTGATTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGAGGATTTTTT
TTACGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTCCATCCTTTAAATAAGAAA
AGCATCGATTCTCAAAATAGTCACCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCA
TTAGGATAAATGACATTGATGCTTCGGTGCTACAAGAAAAGCTTTTGTTTCCATAGTTTTTGATA
AAATCAAAGTTCATCTCAAAAATAAGACAAACATGAATACTCATACTCTTCCCCATTCTTTCCAC
GATTAGGCACCACAAACTTAGTCTTCTCACTAGGATACACGATATTGGTGCTTTGGTTTATTAAA
AAAAGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGCTCATGCCTCAAATGAGCCAAACAAGGA
TTCTAGTATTTATCTTCATTCATTTTGTAATTAAGCACTATAAACACATTCTCCTCATTAGGATA
AATGATATTGATGTATTTTATTTTGCATGAAAATCTTTTCCTTGCCATATTTTCCTTAAAATCAA
AGTACATCCCTTAAATAACACAAACATCGACTCTCATA
Found at i:1288621 original size:41 final size:42
Alignment explanation
Indices: 1288561--1288678 Score: 184
Period size: 41 Copynumber: 2.8 Consensus size: 42
1288551 TAGCCCTCAA
* *
1288561 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACA-G
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1288602 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1288644 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1288679 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
41 37 0.53
42 33 0.47
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1288663 original size:42 final size:41
Alignment explanation
Indices: 1288570--1288678 Score: 182
Period size: 42 Copynumber: 2.6 Consensus size: 41
1288560 AAGAGAAAGA
*
1288570 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGAGAGATAGT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGAGAGATAAT
*
1288611 AGAGATAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACA-GAGAGATAAT
*
1288653 AGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGAGAGGAGGGATGATAGGAGGAG
1288679 GAGAGAAGAA
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
41 30 0.48
42 33 0.52
ACGTcount: A:0.41, C:0.03, G:0.47, T:0.09
Consensus pattern (41 bp):
AGAGAGAGGAGGGATGATAGGAGGAGAGACAGAGAGATAAT
Found at i:1300666 original size:20 final size:20
Alignment explanation
Indices: 1300635--1300681 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 20
1300625 TGGCAATTGG
* *
1300635 AAAAAGAAAAAACAAAACAAA
1 AAAAAGGAAAAAGAAAA-AAA
1300656 AAAAAGGAAAAAGAAAAAAA
1 AAAAAGGAAAAAGAAAAAAA
1300676 AAAAAG
1 AAAAAG
1300682 TTTCAATGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.85, C:0.04, G:0.11, T:0.00
Consensus pattern (20 bp):
AAAAAGGAAAAAGAAAAAAA
Found at i:1305291 original size:476 final size:476
Alignment explanation
Indices: 1304391--1309647 Score: 6400
Period size: 475 Copynumber: 11.1 Consensus size: 476
1304381 GTTGTCATCA
* *
1304391 GATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCTCCAATTTTTGAAAAGTC
1 GATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
* *
1304456 TAAGTTTGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTTATCTTCTTTCATTTTGTGATTA
66 TAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATTA
* * *
1304521 TGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTACGTGGAAAT
131 CGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAAT
* * * * *
1304586 CTTTTCTATGCCAC-ATTTTGCTTAAAATCAATGTTCATCCCTTAAAAAAGACAAGGATCGATTC
196 CTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * * * * * *
1304650 TCGCAACAATCTCCATTCTTTTTAGGATTGAGAACCTAAAACCCATTCCCTTCATTAGGATACTT
260 TCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACTT
* * * **
1304715 GACCTTGATGCTTTGGTGCCACAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTT
325 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT
* * * * * *
1304780 CGTCTCTTAAATAAGACACACACGAATACTCATACTATTCCCCCTTATTTTCATGATTATGCACC
390 TGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCACC
* *
1304845 ATAAACTTAGTCTTCACCTTAG
455 ATAAACTTAGTCTTCTCATTAG
* *
1304867 GATACATGATATTGGGGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
1 GATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
* * *
1304932 TAAGTTTGTGCCTTAAATGAGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGAGATTA
66 TAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATTA
* * * **
1304997 CGCACTATAAACACATTCTCCTCATTAGGTTAAATGATATTAATGATTTTATTTCACGTGGAAAT
131 CGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAAT
* * *
1305062 CTTTTCTTTGCCCTATTTTCCTTAAAATAAAAGTTCATCCCTTAAATAACA-ATAGCATCAATTC
196 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA-AGCATCGATTC
* *
1305126 GT-GTAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTTATTAGGATACA
260 -TCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACT
* * * * * *
1305190 CGATAGTGATGCTTTGGTGTCACAAGAAAGGCTTTTCTTTACACCATTTTTGATAGAATCAAAGT
324 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
* * * *
1305255 TTGCCTCTTAAATAAGACAAATATGAATAGTCATACTAATT-CCTATTCTTTTCGA-GATTAGGC
389 TTGTCTCTTAAATAAGACAAACATGAATACTCATACT-ATTCCCCATTCTTTTC-ATGATTAGGC
* * * *
1305318 ACCATAAACGTAGTCTTATTATAAG
452 ACCATAAACTTAGTCTTCTCATTAG
* * * * * ** *
1305343 GTTGCACAATATTGATTCTTTGGTTT-TGCT-AGAAAGGC-TTTCCCCCTACCAATTTTTGTTAA
1 GATACACGATATTGGTGCTTTGGTTTCT--TAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAA
* * ** * *
1305405 GTCTAAGTTTGTGCCTTAAATGAGATAGACAAGGATTCTAGTATTAATCTTCATTCATTTTGTGA
63 GTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGA
* * * ** *
1305470 TT-CGGCACTATGAACATATTCTCATTGTTAGGATAAATGATATCGATGA-TTTCTTTTGCGTGG
128 TTAC-GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGG
* **
1305533 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATAAAAGTTCATCCCTTAAATAAGATTAGCATCGA
192 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
* * *
1305598 TTCTCGTAATAGTATCCATTCTTTTCCGGATTGGGAACCAAAAACACATTCCCTTCAATAGGATA
257 TTCTCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATA
* * * * *
1305663 CATGACAATGATGCTTTGGTGTTGCAAGAAAGGCTTTTCTTTTCACCATTTTTGATAGAATCAAA
322 CTTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAA
* * * *
1305728 GTTTGCCTCTTAAATAAGACAAATATTAATAGTCATACTAATT-CCCATTCTTTTCGA-GATTAG
387 GTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT-ATTCCCCATTCTTTTC-ATGATTAG
* *
1305791 GCACCATAAA-TGCAGTCTTCTCATAAG
450 GCACCATAAACT-TAGTCTTCTCATTAG
* * * * **
1305818 GATGCACTATATTGATTCTTTGGTTT-TGCT-AGAAAGGC-TTTCCCCCTACCAATTTTTGTAAA
1 GATACACGATATTGGTGCTTTGGTTTCT--TAAGAAAGGCTTTTTTCCC-ACCAATTTTTGTAAA
* * *
1305880 GTCTAAGTTTGTGCCTTAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGA
63 GTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGA
* * * * * *
1305945 TTAGGCACTATGAATATATTCTCCTCGTTAGGATAAATGATATTGAGGA-TTTCTTTTGCGTGGA
128 TTACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGA
*
1306009 AATCTTTTCTTTGCCCTAATTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
193 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
**
1306074 TCTCAAAATAGTCTCCATTCTTTTCAGGATTGGGAA-CATAAAACACATTCCCTTCATTAGGATA
258 TCTCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCA-AAAACACATTCCCTTCATTAGGATA
* * *
1306138 CTTGACATTGATGCTTTGGTG-CTGCTAGAAAAGCTTTTCTTTGCATCATTTTTGATAGAATCAA
322 CTTGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
***
1306202 AGTTCACCTCTTAAATAAGACAAACATGAATACTCA-ATCTATTCCCCATTCTTTTCATGATTAG
386 AGTTTGTCTCTTAAATAAGACAAACATGAATACTCATA-CTATTCCCCATTCTTTTCATGATTAG
*
1306266 GCACCATAAAGTTAGTCTTCTCATTAG
450 GCACCATAAACTTAGTCTTCTCATTAG
1306293 GATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
1 GATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
* * *
1306358 TAAGTTCGTGCCTTAAATAAGCCAAACAAGGATTCTAGTATTAATCTTCATTCATTTTGTGATT-
66 TAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATTA
** * * * *
1306422 CGGCACTCCAAGA-ACATTCTCCTCATTAGGATAAATGATGTTGATAATTTT-TTTTGCATGAAA
131 C-GCACTATAA-ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAA
* * * * *
1306485 ATCTTTTCTTTGCCATATTTTCCTTAAAATCAAAGTACATCCCTGAAATAATACAAACATCGATT
194 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* *** * * * * *
1306550 CTCATAATAGTCTCCATTCTTTTTTTGATTGGGAACCAAAAGCACGTTCCCTTCACTATGATACA
259 CTCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACT
* * * *
1306615 AGACATTGATGCTTTGGTGTCGTAAGAAAAGCATTT-TTTCTACCATTTTTGATAGAATCAAAGT
324 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
* * * * * * *
1306679 TTGTTTCTTAAATAAGGCAAACATGAATACACATACTCTTTCCCATTCTTTTCACGGTTAGGCAC
389 TTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCAC
*
1306744 CATAAACTTAGTCTTCTCTTTAG
454 CATAAACTTAGTCTTCTCATTAG
* *
1306767 GATACACGATATTGGTGCTTTGCTTTCTTAAGAAAGACTTTTTTACCCACCAATTTTTGTAAAGT
1 GATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTT-CCCACCAATTTTTGTAAAGT
*
1306832 CTAAG-TCTGTGCCTCAAATGAGCCAAACAGGGATTCTAGTATTTATCTTCATTCATTTTGTGAT
65 CTAAGTTC-GTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGAT
** *
1306896 TACGCACCGTAAACACATTCTCCTCATTAGGATAAATGGTATTGATGATTTTCTTTTGCGTGGAA
129 TACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAA
* * * * * *
1306961 ATATTTTCTATGCCATATTTTACTTAATATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATT
194 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* * * * ** * ** ** * *
1307026 CTAGTAATAGTCTCCATTCTTTTAATGA-AGGGAACTTAAAACACGTTCGATTTTTTAGGAAACA
259 CTCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACT
* * * * *
1307090 TGACATTGATGCTTTGGTATCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTTATAGAGTCAAAGT
324 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
* * * * * * *
1307155 TTGTCTCCTAAATAAGACAAACATGAATACACATACTCTTTCCCATTATTTCCATGATTAGGGAC
389 TTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCAC
* * *
1307220 TACAAACATAGTCTTCTCATTAG
454 CATAAACTTAGTCTTCTCATTAG
* *
1307243 GATATACGATATTGGTGCTATGGTTTCTTACA-AAAGGCTTTTTTCCCACCAATTTTTGTAAAGT
1 GATACACGATATTGGTGCTTTGGTTTCTTA-AGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGT
* * * *
1307307 CTAAGTTCGTGCCTCAAATGAGGCAAACAAGGATTTTAGTATTTATCCTCATTCATTTTGAGATT
65 CTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATT
*
1307372 ACGTACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAA
130 ACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAA
* * * * *
1307437 TCTTTTCTTTGCCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAATACGAAAAGGATCAATTC
195 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * * * *
1307502 TTGTAACAGTCTCCATTATTTTCAGGATTGGGATCCTAAAACACATTCCCTTCATTAGGATACTT
260 TCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACTT
* * * **
1307567 GACATTGATGCTTTGGTGTTGCAAGAAATGCTTTTCTTTCTACCGCTTTTGATAGAATCAAAGTT
325 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT
* * * * *
1307632 TGTCCCTTAAATAAGACAGACATGAATACACATACTCTTCCCCATTCTTTTCATGGTTAGGCACC
390 TGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCACC
* *
1307697 ATAAACTTAGTCTTGTCTTTAG
455 ATAAACTTAGTCTTCTCATTAG
* * *
1307719 GATACACGATATTAGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCAACCAATATTTGTAAAGTC
1 GATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
* * * * * *
1307784 TAAGTTCGTGCCTCAAATGAGCCAAATAAGGATTCTAGAAATAATCTTCATTTATTTCGTGATTA
66 TAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATTA
* *
1307849 CGCA-T-T------ATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCGTGAAAAT
131 CGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAAT
* * * *
1307906 CTTTTATTTGCCCTATTTTCCTTAAAATCAATGTTTATCCCTTAAATAAGATAAGCATCGATTCT
196 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* * * *
1307971 CTTAATAGTCTCCATTTGTTTTACA--ATTGGGAACCAAAAACACATTCACTTCATTAGGATACA
261 CGTAATAGTCTCCA-TTCTTTT-CAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACT
** * * * *** *
1308034 CAATATTGATGCTTTGGTGTCGTAAGAAAGGCTTTTCTTTTTGCCATTTTCGATAGAATCAAAGT
324 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
* * * * * *
1308099 TTGCCTTTTAAATCAGACAAATATGAATAGTCATACTAATT-TCCATTCTTTTCGA-GATTAGGC
389 TTGTCTCTTAAATAAGACAAACATGAATACTCATACT-ATTCCCCATTCTTTTC-ATGATTAGGC
* *
1308162 ACCATCAA-TGCT-GTCTTCTCATAAG
452 ACCATAAACT--TAGTCTTCTCATTAG
* * * * *** *
1308187 GATGCACGATATTGATTCTTTGGTTTGC-T-AGAAAGCCTTTCCCCCCACCAATTTTTGTCAAGT
1 GATACACGATATTGGTGCTTTGGTTT-CTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGT
* *
1308250 CTAAGTTCGTGCCTCAAATGAGCCAAAC-AGGAATTCTAGTATTGATCTTCATTCATATTGTGAT
65 CTAAGTTCGTGCCTCAAATGAGCCAAACAAGG-ATTCTAGTATTTATCTTCATTCATTTTGTGAT
* * * * * *
1308314 TAGGCACTATGAACATAGTCT-CTCCGTTAGGATAAATGATGTTGATGA-TTTCTTTTGCGTGGA
129 TACGCACTATAAACACATTCTCCT-CATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGA
* *
1308377 AATCTTTTCTTCGCCCTATTTTCCTTAAAATAAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
193 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
* * * *
1308442 TCTTGAAATAGTCTCTATTCTTTTCAGGATTGGGAACCAAAAACACAATCCCTTCATTAGGATAC
258 TCTCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAC
* * * *
1308507 TTGACATTGATGCTTTGGTG-CTGCTAGAAAAGCTTTTCTTTCTATCGTTTTTGATAGAATCAAA
323 TTGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAA
* * ** ** *
1308571 GCTTGTCTCTTAAATAAGACAAACATGGATACTCACGCTATTCCCTGTTCTTTACATGATTAGGC
387 GTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGC
* * *
1308636 ACCAAAAACTTAGTTTTCTTATTAG
452 ACCATAAACTTAGTCTTCTCATTAG
* * *
1308661 GATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTCTTTTCCCACAAATTTTTGTAAAATC
1 GATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
** *
1308726 TAAGTTCGTGCCTCAAATGAATCAAACAAGGATTCTAGTA-TTAGTCTTCTTTCATTTTGTGATT
66 TAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTTA-TCTTCATTCATTTTGTGATT
** * * * * *
1308790 -CGGCACTCCAAGCACATTCT-CTCATTAGGATAAATGATGTTGATGATTTTTTTTTGCATGAAA
130 AC-GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAA
* * * *
1308853 ATCTTTTCTTTGCCCTATTTTCCGTAAAATCAAAGTACATCCCTTAAATAACACAAACATCGATT
194 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* * ** * *
1308918 CTCATAATAGTATCCATTCTTTTTTGGATTGGGAACCAAAAACACATTCCTTTCACTAGGATA-T
259 CTCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACT
* *
1308982 AGGACATTGATGCTTTGGTGTCGCAAGAAAAGC-ATT-TTTCCACCATTTTTGATAGAATCAAAG
324 -TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
* * * * *
1309045 TTTGTCTCTTAAATAAGGCAAACATGAATACACATACTCTTCCCCATTCTTTTCACGATTTGGCA
388 TTTGTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCA
* *
1309110 CCATAAACTTAGTCCTCTCTTTAG
453 CCATAAACTTAGTCTTCTCATTAG
** *
1309134 GATACACGATATTGGTGCTTTACTTTATTAAGAAAGGCTTTTTTACCCACCAATTTTTGTAAAGT
1 GATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTT-CCCACCAATTTTTGTAAAGT
*
1309199 CTAAGTTTGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATT
65 CTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATT
* * *
1309264 ACGCACCATAAACACATTCTCCTTATTAGGATATATGATATTGATGATTTTCTTTTGCGTGGAAA
130 ACGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAA
* * * ** *
1309329 TATTTTCTATGCCATATTTTATTTAAAATCAAAGTTCATCCCTTAAATCAGACAAGCATCGATTC
195 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * ** ** *
1309394 TCGTAATAATCTCCATTCTTTTTAGGA-T-----------ACACATTCTATTTTTTAGGATACAT
260 TCGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACTT
* * * ** *
1309447 GACAATGATGCTTTGGTATCGCAAAAAAAGCTTTTCTTTCCATTATTTTTGATAGAGTCAAAGTT
325 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT
* * * * *
1309512 TGTCT-TCTAAATAAGACAAACATGAATACACATACTCTT-CCCATTCTTGTCACGATTAGGCCC
390 TGTCTCT-TAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCAC
* *
1309575 CAAAAACTTAGTCTTCTTATTAG
454 CATAAACTTAGTCTTCTCATTAG
* * *
1309598 GATACACAATATTAGAGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACC
1 GATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACC
1309648 TAAGCCAAAT
Statistics
Matches: 4141, Mismatches: 562, Indels: 169
0.85 0.12 0.03
Matches are distributed among these distances:
463 51 0.01
464 81 0.02
465 62 0.01
466 3 0.00
467 86 0.02
468 293 0.07
469 12 0.00
470 2 0.00
472 2 0.00
473 149 0.04
474 530 0.13
475 1791 0.43
476 1072 0.26
477 7 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (476 bp):
GATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
TAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATTA
CGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAAT
CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
CGTAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACTTG
ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
GTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCACCA
TAAACTTAGTCTTCTCATTAG
Found at i:1305383 original size:159 final size:157
Alignment explanation
Indices: 1305177--1306334 Score: 384
Period size: 158 Copynumber: 7.3 Consensus size: 157
1305167 CACATTCCCT
* * * ** *
1305177 TTATTAGGATACACGATAGTGATGCTTTGGTGTCACAAGAAAGGCTTTTCTTTACACCATTTTTG
1 TTATAAGGATACACGATATTGATGCTTTGGTTTTGCTAGAAAGGCTTTTCTTTAC-CCATTTTTG
*
1305242 ATAGAATCAAAGTTTGCCTCTTAAATAAGACAAATATGAATAGTCATACTAATTCCTATTCTTTT
65 ATAGAATCAAAGTTTGCC-CTTAAATAAGACAAACATGAATAGTCATACTAATTCCTATTCTTTT
**
1305307 CGAGATTAGGCACCATAAACGTAGTCTTA
129 CGAGATTAGGCACCATAAACACAGTCTTA
* * * * * ** *
1305336 TTATAAGGTTGCACAATATTGATTCTTTGGTTTTGCTAGAAAGGCTTTCCCCCTACCAATTTTTG
1 TTATAAGGATACACGATATTGATGCTTTGGTTTTGCTAGAAAGGCTTT-TCTTTACCCATTTTTG
* * * * * * * * * * *
1305401 TTA-AGTCTAAGTTTGTGCCTTAAATGAGATAGACAAGGAT--TCTAGTATTAA-TCTTCATTCA
65 ATAGAATCAAAGTTTG-CCCTTAAATAAGACAAACATGAATAGTC-A-TACTAATTCCT-ATTC-
* * * * * * *
1305462 TTTT-GTGATTCGGCACTATGAACATATTCTCA
125 TTTTCGAGATTAGGCACCATAAACACAGTCTTA
* * * * * * * * * * *
1305494 TTGTTAGGATAAATGATATCGATGATTT-CTTTTGCGTGGAAA-TCTTTTCTTTGCCCTATTTTC
1 TTATAAGGATACACGATATTGATGCTTTGGTTTTGC-TAGAAAGGCTTTTCTTTACCC-ATTTTT
** * * ** * ** * * *
1305557 CTTAAAATAAAAGTTCAT-CCCTTAAATAAGATTAGCATCG-ATTCTCGTAATAGTATCC-ATTC
64 GATAGAATCAAAGTT--TGCCCTTAAATAAGACAAACAT-GAATAGTCATACTAAT-TCCTATTC
* * * *
1305619 TTTTCCG-GATTGGGAACCAAAAACACATTCCCTTCA
125 TTTT-CGAGATTAGGCACCATAAACACAGT--CTT-A
* * * * * *
1305655 --AT-AGGATACATGACAATGATGCTTTGGTGTTGCAAGAAAGGCTTTTCTTTTCACCATTTTTG
1 TTATAAGGATACACGATATTGATGCTTTGGTTTTGCTAGAAAGGCTTTTCTTTAC-CCATTTTTG
* * *
1305717 ATAGAATCAAAGTTTGCCTCTTAAATAAGACAAATATTAATAGTCATACTAATTCCCATTCTTTT
65 ATAGAATCAAAGTTTGCC-CTTAAATAAGACAAACATGAATAGTCATACTAATTCCTATTCTTTT
** *
1305782 CGAGATTAGGCACCATAAATGCAGTCTTC
129 CGAGATTAGGCACCATAAACACAGTCTTA
* * * * * ** *
1305811 TCATAAGGATGCACTATATTGATTCTTTGGTTTTGCTAGAAAGGCTTTCCCCCTACCAATTTTTG
1 TTATAAGGATACACGATATTGATGCTTTGGTTTTGCTAGAAAGGCTTT-TCTTTACCCATTTTTG
* * * * * * * * *
1305876 -TA-AAGTCTAAGTTTGTGCCTTAAATGAGCCAAACAAGGAT--TC-TAGTATTGATCTTCATTC
65 ATAGAA-TCAAAGTTTG-CCCTTAAATAAGACAAACATGAATAGTCATACTAAT--TCCT-ATTC
* * * * * * **
1305936 ATTTT-GTGATTAGGCACTATGAATATATTCTCC
125 -TTTTCGAGATTAGGCACCATAAACACAGTCTTA
** * * * * * * * * * * *
1305969 TCGTTAGGATAAATGATATTGAGGATTT-CTTTTGCGTGGAAA-TCTTTTCTTTGCCCTAATTTC
1 TTATAAGGATACACGATATTGATGCTTTGGTTTTGC-TAGAAAGGCTTTTCTTTACCC-ATTTTT
** * * ** * * *
1306032 CTTAAAATCAAAGTTCAT-CCCTTAAATAAGACAAGCATCG-ATTCTCAAAATAGTCTCC-ATTC
64 GATAGAATCAAAGTT--TGCCCTTAAATAAGACAAACAT-GAATAGTCATACTAAT-TCCTATTC
* * * *
1306094 TTTTC-AGGATT-GGGAACATAAAACACATTCCCT-
125 TTTTCGA-GATTAGGCACCAT-AAACACAGT-CTTA
* * ** * ** * * *
1306127 TCATTAGGATACTTGACATTGATGCTTTGGTGCTGCTAGAAAAGCTTTTCTTTGCATCATTTTTG
1 TTATAAGGATACACGATATTGATGCTTTGGTTTTGCTAGAAAGGCTTTTCTTTAC-CCATTTTTG
** * *
1306192 ATAGAATCAAAGTTCACCTCTTAAATAAGACAAACATGAATACTCA-ATCT-ATTCCCCATTCTT
65 ATAGAATCAAAGTTTGCC-CTTAAATAAGACAAACATGAATAGTCATA-CTAATT-CCTATTCTT
*** *
1306255 TTC-ATGATTAGGCACCATAAAGTTAGTCTTC
127 TTCGA-GATTAGGCACCATAAACACAGTCTTA
* * *
1306286 TCATTAGGATACACGATATTGGTGCTTTGG-TTT-CTTAAGAAAGGCTTTT
1 TTATAAGGATACACGATATTGATGCTTTGGTTTTGC-T-AGAAAGGCTTTT
1306335 TTCCCACCAA
Statistics
Matches: 717, Mismatches: 216, Indels: 132
0.67 0.20 0.12
Matches are distributed among these distances:
155 5 0.01
156 12 0.02
157 59 0.08
158 311 0.43
159 297 0.41
160 28 0.04
161 5 0.01
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (157 bp):
TTATAAGGATACACGATATTGATGCTTTGGTTTTGCTAGAAAGGCTTTTCTTTACCCATTTTTGA
TAGAATCAAAGTTTGCCCTTAAATAAGACAAACATGAATAGTCATACTAATTCCTATTCTTTTCG
AGATTAGGCACCATAAACACAGTCTTA
Found at i:1309428 original size:18 final size:19
Alignment explanation
Indices: 1309407--1309445 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
1309397 TAATAATCTC
1309407 CATTC-TTTTTAGGATACA
1 CATTCTTTTTTAGGATACA
1309425 CATTCTATTTTTTAGGATACA
1 CATTC--TTTTTTAGGATACA
1309446 TGACAATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.28
21 13 0.72
ACGTcount: A:0.28, C:0.15, G:0.10, T:0.46
Consensus pattern (19 bp):
CATTCTTTTTTAGGATACA
Found at i:1310544 original size:476 final size:475
Alignment explanation
Indices: 1309650--1314838 Score: 6360
Period size: 475 Copynumber: 10.9 Consensus size: 475
1309640 TTCCCACCTA
* *
1309650 AGCCAAATAAGGATTCTAGTTTTTATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCT
1 AGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCT
* ** ** * *
1309715 CCTTATTAGGCGAAATGATGCTGATGATTTTTTTTTTGCGTGGAAATCTTTTCTTGGCCCTATTT
66 CCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTT
* * *
1309780 TCCTTAAAATC-AAGTTTCATCTCTT-AATAAGACAAGCATCGATTCTTC-TAATAGTCACCATT
130 TACTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAGCATCGATTC-TCGTAATAGTCTCCATT
* ** * ***
1309842 CTTTTCATGATTCAGAACC-AAAACCACATTCCCTTCATTAGTATAAAAGACATTGATGCTTTGG
193 CTTTTCAGGATTGGGAACCTAAAA-CACATTCCCTTCATTAGGATACTTGACATTGATGCTTTGG
* * * * * * *
1309906 TGTCACAAGAAAAGCTTTTTTTTTCACTGTTTTTTATAAAATCAAAGTTTGCCTCTTAAATAAGA
257 TGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * * * *
1309971 CAAACATGAATACACATACTCTTCCCCATTCTTTCCACGATTAGGGAACACAAACTTAGTCTTCT
322 CAAACATGAATACACATACTATTCCCCATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTCT
* * *
1310036 CATTAGGATACACGATATTGGTGCTATGGTTTCTTAAAAAAGGCTTTTTTCCCACTAATTTTTGT
387 C-TTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGT
*
1310101 AAAGTCTAAGTTCGTACCTCAAATG
451 AAAGTCTAAGTTCGTGCCTCAAATG
*
1310126 AGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGAGATTACGCACTATAAACACATTCT
1 AGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCT
* *
1310191 CCTCATTTGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
66 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
* * * *
1310256 ACTTAAAAGCAAAGTTCATCCCTTAAATACGAAAAAG-ATCGATTCTCGTAACAGTCTCCATTCT
131 ACTTAAAATCAAAGTTCATCCCTTAAATAAG-ACAAGCATCGATTCTCGTAATAGTCTCCATTCT
1310320 TTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGT
195 TTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGT
* * * * * *
1310385 TGCAAGAAAAGCTTTTCTTTCTACCATTTTTGATAGAATCAAAGTTTATCTCCTAAATAAGACAG
260 CGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * *
1310450 ACATGAATACACAAACTCTTCCCCATTCTTTTCACGATTAGGCACCATAAACTTAGTCTTCTCTT
325 ACATGAATACACATACTATTCCCCATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTCTCTT
* ** *
1310515 CAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACAAATAATTATAAA
390 -AGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAA
*
1310580 GTCAAAGTTCGTGCCTCAAATG
454 GTCTAAGTTCGTGCCTCAAATG
* * * * * * * *
1310602 AGCCAGACAAGGATTTTAGAAATAATCTTCATTTACTTCGTGATTACGCA-T-T------ATTCT
1 AGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCT
* * * * *
1310659 CCTCATTAGGGTAAATGATACTGATGATTTTATTTTGCGTGAAAATCTTTTCTTTACCCTATTTT
66 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
* * * * * * *
1310724 CCTTAAAATAAAAGTTTATCCCTTAAATAAGACAAGAATCGATTCTCTTAATATTCTCCATTCGT
131 ACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTT
*** *
1310789 TTCAGGATTGGGAACC-AAAACACATTCCCTTCATTAGGATACACAATATTGATGCTTTGGTGTC
196 TTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGTC
* * * * *
1310853 GTAAGAAAGGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAA
261 GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* ** * *
1310918 TATGAATAGTCATACTAATT-CCCATTCTTTTCGA-GATTAGGCACCATAAACGTAGTTTTCTCA
326 CATGAATACACATACT-ATTCCCCATTCTTTTC-ATGATTAGGCACCATAAACTTAGTCTTCTC-
* * * ** * **** *
1310981 TAAGGATGCACGATTTTAATTCTTTGGTTT-TGCT-AGAAAGGCTTCCCCCCCCCCAAATTTTTG
388 TTAGGATACACGATATTGGTGCTTTGGTTTCT--TAAGAAAGGCTTTTTTCCCACC-AATTTTTG
*
1311044 TCAAGTCTAAGTTCGTGCCTCAAATG
450 TAAAGTCTAAGTTCGTGCCTCAAATG
* * * * * *
1311070 AGCCAAAAAAGGA---T--TATTGATCTTCATTCATATTGTGATTAGGCACTATGAACATATTCT
1 AGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCT
* ** * * * *
1311130 CCACAACACGATAAATGGTATTGATGATTTT-TTTTGCGTGGAAATCTTTTCTTTGCACTATTCT
66 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
* * *
1311194 CCTTAAAATAAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGAAATAGTCTCCATTCTT
131 ACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTT
* * *
1311259 TTCAGGATTGTGAACCAAAAACACATTCTCTTCATTAGGATACTTGACATTGATGCTTTGGTG-C
196 TTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGTC
* * * * **
1311323 TGCTACAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCGAAGTTCATCTCTTAAATAAGACAA
261 -GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* *
1311388 ATATGAATACCCATACTATTCCCCATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTCTCAT
325 ACATGAATACACATACTATTCCCCATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTCTC-T
* * * *
1311453 TGGGATACACGATATTGGTGCATTGGTTTCTTAAGAAAGGCTTTTTTCCAACCAATTTTTGTAAG
389 TAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAA
1311518 GTCTATA-TTCGTGCCTCAAATG
454 GTCTA-AGTTCGTGCCTCAAATG
* *
1311540 AGCCAAACAAGGATTCTAGTGTTTATCTTCATTCATTTTGAGATTACGCACTATAAACACATTCT
1 AGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCT
* * * *
1311605 CCTCTTTAGGATAACTTATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTATGCCCTATTTT
66 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
* * * * *
1311670 ACTTAAAATCAATGTTCATTCCTTAAATAAGACAATG-TTCGATCCTCATAATAGTCTCCATTCT
131 ACTTAAAATCAAAGTTCATCCCTTAAATAAGACAA-GCATCGATTCTCGTAATAGTCTCCATTCT
* *
1311734 TTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGGTACTTGACATAGATGCTTTGGTGT
195 TTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGT
* * *
1311799 CGCAAGAAAAGCTTTTCTTTCCACTGTTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAAACAA
260 CGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * *
1311864 ACATGAATACATATACTCTTCCCCATTCTTCTCACGATTAGGCACCATAAACTTAGTCTTCTTAT
325 ACATGAATACACATACTATTCCCCATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTC-TCT
* * * * * * * *
1311929 TAGCACACATGATATTGGTGCTTT-GTTTCCTAAGAAAGGTTTTTTTCTCACCAATTATGGTAAA
389 TAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAA
1311993 GTCTAAGTTCGTGCCTCAAATG
454 GTCTAAGTTCGTGCCTCAAATG
* * * * * * *
1312015 AGACAAA-AATGGATTCCAGTAGTGATCTTCATTTATTTTGTGATTAGGCACTATGAACACATTC
1 AGCCAAACAA-GGATTCTAGTATTTATCTTCATTCATTTTGTGATTACGCACTATAAACACATTC
* * * *
1312079 TGCTCTTTAGCATAAATGATATTGATGATTTTCTTTTGCGTGGAAAACTTTTCTTTG-CCTA-TT
65 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTT
* * *
1312142 TACCTTAAAATTAAAGTTCATCCCTTAAATTAGACAAGCATCGATTCTCGTAATAGTCTCCAGTC
130 TA-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTC
*
1312207 TTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGT-
194 TTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTG
* *
1312271 T-GCCAA-AAAAGCTTTTCATTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
259 TCG-CAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * *
1312334 AAACATGAATACTCATACTAGTCCCCATTCTTTTCGTGATTAAGCACCATAAACTTAGTCTTCTT
323 AAACATGAATACACATACTATTCCCCATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTC-T
* *
1312399 ATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTCTCCTACCAATTTTTGT
387 CTTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTT-TCCCACCAATTTTTGT
* *
1312464 AAAGTCTAAGTTCATGCCTCAAATA
451 AAAGTCTAAGTTCGTGCCTCAAATG
* * **
1312489 AGCCAAACAAGGATTCTAGTATTAATCTTCATTTATTTTGTGATT-CGGTGCTATAAACACATTC
1 AGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATTAC-GCACTATAAACACATTC
* * * * * *
1312553 TCTTCATTAGGATAACTTATATTGATGATTTTTTTTTGCGTGAAAATCTTTTCTATGCCCTATTT
65 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTT
* ** * * *
1312618 TTCTTAAAATCATTGTTCATCTCTTAAATAAGACAAGGAT-GATTCTCGTAACAGTCTCCATTCT
130 TACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCT
* * *
1312682 TTTTAGGATTAGGAACCTAAAACACATTCCCTTCATTAGGGTACTTGACATTGATGCTTTGGTGT
195 TTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGT
* * *
1312747 CACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAA
260 CGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * **
1312812 ACATGAATACATATACTCTTCCCCATTCTTTTCACAATTAGGCACCATAAACTTAGTCTTCTCAT
325 ACATGAATACACATACTATTCCCCATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTCTC-T
* * * *
1312877 TAGGATACACGATATTGGTGCTATGGATTCTTAAGAAAAGCTTTTTTCTCACCAATTTTTGTAAA
389 TAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAA
1312942 GTCTAAGTTCGTGCCTCAAATG
454 GTCTAAGTTCGTGCCTCAAATG
* * * * * * * * * * * *
1312964 AGACAAACATGGATTCCAATGTTGATATTTATTAATTTTGTGATTAGGCACTATGAACACATCCT
1 AGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCT
* * * *
1313029 TCTCATTAGGATAAATGATATTGATGATTTTATTTTGCGTGGAAAACTTTTCTTTGTCCTATTTT
66 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
* * * * *
1313094 CCTTAAAATCAATGTTCATCCTTTAAATAAGACAAGCATCGACTCTCGTAATGGTCTCCATTCTT
131 ACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTT
* * *
1313159 TTCCGGATTGGGAACCAAAAACACATTCTCTTCATTAGGATACTTGACATTGATGCTTTGGTG-C
196 TTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGTC
* * ** * * * * *
1313223 TGCTAGAAATGCCCCTT-TTTCCATCGTTTTTGATAGAATTAAAGTTCGACTCTTAAATAA-AAA
261 -GCAAGAAAAG-CTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * *
1313286 AAGCATGAATACTCATACTATTCCCCATTCTTTTCTTGATTAGGCACCACAAACTTAGTCTTCAC
324 AA-CATGAATACACATACTATTCCCCATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTC-T
* * * * *
1313351 CGTAGGATACATGATATTGGTACTTTGGTTTCTTAAGAAAGGCTTTTTTTCCTCCAA-TTTTGTA
387 CTTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTA
* * * *
1313415 AAGTTTAAGTCCGTACGTCAAATG
452 AAGTCTAAGTTCGTGCCTCAAATG
* * *
1313439 AGCCAAACAAGGATTCTAGTATTTATCTTCTTTCATTTTGTGATTATGCACTATAAACACATTTT
1 AGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCT
* * * * *
1313504 CCTTATTAGGATAAAT-ATTATTGATGATTTTCTTTTGCGCGAAAATCTTTTCTATGCCATATTT
66 CCTCATTAGGATAAATGA-TATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTT
* * * * * * *
1313568 TGCTTAAAATCAATGTTCATTCCTTAAAAAAGACAAGGATCGATTCTCGTAACAGTCTCTATTCT
130 TACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCT
* * *
1313633 TTTCAGGATTAGGAACCTAAAAC-CTATTTCCTTCATTAGGATACTTGACATTGATGCTTTGATG
195 TTTCAGGATTGGGAACCTAAAACAC-ATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTG
* * * * *
1313697 TCACAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATTAAAGTTCGTCTATTAAATAAGACA
259 TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
** * * *
1313762 AACATGAATATTCATACTATTCCACATTCTTTTCATGATTAGGCACCATAACCTTAGTCTTCACC
324 AACATGAATACACATACTATTCCCCATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTC-TC
*
1313827 TTAGGATACATG--ATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTTCCCACCAATTTTTGTA
388 TTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGC-TTTTTTCCCACCAATTTTTGTA
* *
1313890 TAGTCTAAGTTCATGCCTCAAATG
452 AAGTCTAAGTTCGTGCCTCAAATG
* *
1313914 AGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGAGATTACGCACTATAAATACATTCT
1 AGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCT
* * * ** * *
1313979 CCTCATTAGCATAAATGATATTGATGATTTTGTTTTGCGTGGAAATCTTTTGTACGTCTTATTTT
66 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
** * *
1314044 ACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGACCCTCATAACAGTCTCCATTCTT
131 ACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTT
* * * * *
1314109 TTCAAGATTGGGAACCAAAAACACATTCTCTTCATTAAGATACTTGACATTGATGCCTTGGTG-C
196 TTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGTC
* **
1314173 TGCTAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCATCTCTTAAATAAGACAA
261 -GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * * *
1314238 ACATGAATACTCATACTATTTCCCAATCTTCTCATGATTAGGCACCATAAAATTTGTCTTCTCCT
325 ACATGAATACACATACTATTCCCCATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTCT-CT
* * *
1314303 TAGGATACATGATATTGGTGCTTTGCTTTCTTAAGAAAGGCTTTTTTCCAACCAATTTTTGTAAA
389 TAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAA
* *
1314368 GTCTAAATTCGTGCCTCCAATG
454 GTCTAAGTTCGTGCCTCAAATG
* * * ** * * * * *
1314390 AGCCAAGCAAGGATTCCAGTATTAATCTTCATTCATTTCATCATTACGCCCAATAAATACATTAT
1 AGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCT
* * *
1314455 CCTCATTAGTATAAATGATATTGATGATTTTCTTTTGCAT-GAAATGCTTTT-TTATGTCCTATT
66 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAAT-CTTTTCTT-TGCCCTATT
* * *
1314518 TTACTTAAAATCAAAGTTCATCCCTTAAA-AAGACAAGCATCGATTCTAGTAACAGTCTCTATTC
129 TTACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTC
* * *
1314582 TTTTCAGGATTGGGAACCTAAAACACTTTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTG
194 TTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTG
* * * * *
1314647 TCGCAAGAAAAGCTTTTCTTTCTACCATTTTTTATA-AGGTCAAAGTTTGTCTTTTAAATAAGAC
259 TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGA-ATCAAAGTTTGTCTCTTAAATAAGAC
* * * * *
1314711 AAACATGAATA-ATCATAGTAATCCCCATTCTTTT-ATGTATTAGGTACCACAAACATAGTCTTC
323 AAACATGAATACA-CATACTATTCCCCATTCTTTTCATG-ATTAGGCACCATAAACTTAGTCTTC
* * * * ** * *
1314774 TCAATAGGATATACGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC-ATTTTT
386 TC-TTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTT-TTCCCACCAATTTTT
1314838 G
449 G
1314839 ATAGAATCAA
Statistics
Matches: 4053, Mismatches: 581, Indels: 159
0.85 0.12 0.03
Matches are distributed among these distances:
463 23 0.01
464 1 0.00
465 2 0.00
466 1 0.00
467 191 0.05
468 174 0.04
470 151 0.04
471 214 0.05
472 134 0.03
473 56 0.01
474 359 0.09
475 1468 0.36
476 1237 0.31
477 42 0.01
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (475 bp):
AGCCAAACAAGGATTCTAGTATTTATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCT
CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
ACTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTT
TTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGTC
GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
CATGAATACACATACTATTCCCCATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTCTCTTA
GGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGT
CTAAGTTCGTGCCTCAAATG
Found at i:1315369 original size:631 final size:634
Alignment explanation
Indices: 1314177--1315453 Score: 1662
Period size: 631 Copynumber: 2.0 Consensus size: 634
1314167 TGGTGCTGCT
*
1314177 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACAT
1 AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACAT
* * * * * * *
1314242 GAATACTCATACTATTTCCCAATCTTCTCATGATTAGGCACCATAAAATTTGTCTTCTCCTTAGG
66 GAAGACACATACTATTCCCCAATCTTCTCACGATTAAGCACCATAAAATTAGTCTTCTCATTAGG
* * * *
1314307 ATACATGATATTGGTGCTTTGCTTTCTTAAGAAAGGCTTTTTTCCAACCAATTTTTGTAAAGTCT
131 ATACACGATATTGGTGCTTTGCATTCTTAAGAAAGGCTTTTTTCCAACCAAATTTTATAAAGTCT
* * * *
1314372 AAATTCGTGCCTCCAATGAGCCAAGCAAGGATTCCAGTATTAATCTTCATTCATTTCATCATTAC
196 AAATTCGTCCCACCAATGAGACAAACAAGGATTCCAGTATTAATCTTCATTCATTTCATCATTAC
* * * * *
1314437 GCCCAATAAATACATTATCCTCATTAGTATAAATGATATTGATGATTTTCTTTTGCATGAAATGC
261 GCACAATAAACACATTATCCTCATTAGGATAAATGATATTAATGATTTTCTTTTGCATGAAATGA
*
1314502 TTTTTTATGTCCTATTTTACTTAAAATCAAAGTTCATCCCTTAAAAAGACAAGCATCGATTCTAG
326 TTTTTTATGTCCTACTTTACTTAAAATCAAAGTTCATCCCTTAAAAAGACAAGCATCGATTCTAG
* * * * * *
1314567 TAACAGTCTCTATTCTTTTCAGGATTGGGAACCTAAAACACTTTCCCTTCGTTAGGATACATGAC
391 TAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATAAC
** * * **
1314632 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACCATTTTTTATAAGGTCAAAGTTTGT
456 ATTGATGCACTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTATAAGATCAAAGTTCAT
* * * *
1314697 CTTTTAAATAAGACAAACATGAATAATCATAGTAATCCCCATTCTTTT-ATGTATTAGGTACCAC
521 CTCTTAAATAAGACAAACATGAATAAGCATAGCAATCCCCATTCTTTTCATG-ATTAGGCACCAC
*
1314761 AAACATAGTCTTCTCAATAGGATATACGATATTGATGCTTTGGTGTCACA
585 AAACATAGTCTTCTCAATAGGATACACGATATTGATGCTTTGGTGTCACA
**
1314811 AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
1 AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACAT
* * * * *
1314876 GAAGACACATACTCTTCCCCATTCTTTTCGCGATTAAGCACCATAAACTTAGTCTTCTCATTAGG
66 GAAGACACATACTATTCCCCAATCTTCTCACGATTAAGCACCATAAAATTAGTCTTCTCATTAGG
* *
1314941 ATGCACGATATTGGTGCTTTGGATTCTTAAGAAAGGCTTTTTTCTC-ACCAAATTTTATAAAGTC
131 ATACACGATATTGGTGCTTTGCATTCTTAAGAAAGGCTTTTTTC-CAACCAAATTTTATAAAGTC
* * * * ** *
1315005 TAAGTTCGTCCCACGAATGAGACAAACATGGATTCTAGTATTAATCTTCATTCATTTTGTGATTA
195 TAAATTCGTCCCACCAATGAGACAAACAAGGATTCCAGTATTAATCTTCATTCATTTCATCATTA
* * * *
1315070 GGCACTATGAACACA-T-T-CTCATTAGGATAAATGATATTAATGATTTTCTTTTGCGTTGAAAT
260 CGCACAATAAACACATTATCCTCATTAGGATAAATGATATTAATGATTTTCTTTTGC-ATGAAAT
* * *
1315132 -ATTTTCTT-TG-CCTTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAGTCAAGCATCGATT
324 GATTTT-TTATGTCC-TACTTTACTTAAAATCAAAGTTCATCCCTTAAAAAGACAAGCATCGATT
*
1315194 CTCA-TAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAC
387 CT-AGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAC
* * * * * *
1315258 CTAATATTGATGCACTGGTGCTAC-TAA-AAAAGCTTTTTTTTCCACCGTTTTTTAT-AGAATCC
451 ATAACATTGATGCACTGGTG-T-CGCAAGAAAAGCTTTTCTTTCCACCATTTTTTATAAG-ATCA
*
1315320 AAGTTCATCTCTTAAATAAGACAAACATGAATACGCAT-GCAATTCCCCATTCTTTTCATGATTA
513 AAGTTCATCTCTTAAATAAGACAAACATGAATAAGCATAGCAA-TCCCCATTCTTTTCATGATTA
* ** * * * **
1315384 GGCACCATAAATTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTA
577 GGCACCACAAACATAGTCTTCTCAATAGGATACACGATATTGATGCTTTGGTGTCACA
*
1315442 AGAAAGGCTTTT
1 AGAAAAGCTTTT
1315454 TTCTCCCAAA
Statistics
Matches: 554, Mismatches: 79, Indels: 23
0.84 0.12 0.04
Matches are distributed among these distances:
630 7 0.01
631 293 0.53
632 16 0.03
633 2 0.00
634 235 0.42
635 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (634 bp):
AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACAT
GAAGACACATACTATTCCCCAATCTTCTCACGATTAAGCACCATAAAATTAGTCTTCTCATTAGG
ATACACGATATTGGTGCTTTGCATTCTTAAGAAAGGCTTTTTTCCAACCAAATTTTATAAAGTCT
AAATTCGTCCCACCAATGAGACAAACAAGGATTCCAGTATTAATCTTCATTCATTTCATCATTAC
GCACAATAAACACATTATCCTCATTAGGATAAATGATATTAATGATTTTCTTTTGCATGAAATGA
TTTTTTATGTCCTACTTTACTTAAAATCAAAGTTCATCCCTTAAAAAGACAAGCATCGATTCTAG
TAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATAAC
ATTGATGCACTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTATAAGATCAAAGTTCAT
CTCTTAAATAAGACAAACATGAATAAGCATAGCAATCCCCATTCTTTTCATGATTAGGCACCACA
AACATAGTCTTCTCAATAGGATACACGATATTGATGCTTTGGTGTCACA
Found at i:1315454 original size:159 final size:157
Alignment explanation
Indices: 1309893--1315944 Score: 745
Period size: 159 Copynumber: 38.3 Consensus size: 157
1309883 TATAAAAGAC
* ** * ** * *
1309893 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTTTTTTCACTGTTTTTTATAAAATCAAAGTTTGC
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCCACCATTTTTTAT-AAATCAAAGTTCGT
* ** * * * * *
1309958 CTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTCCACGATTAGGGAACACA
65 CTCTTAAATAAGACAAACATGAATACGCAT-CAATTCCCCATTCTTTTCATGATTAGGCACCATA
*
1310023 AACTTAGTCTTCTCATTAGGATACACGAT
129 AACATAGTCTTCTCATTAGGATACACGAT
* * * * * * *
1310052 ATTGGTGCTATGGTTTCTTAA-AAAAGGC-TTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCG
1 ATTGATGCTTTGGTTTCTTAAGAAAA-GCTTTTTTTTCCACCATTTTTTATAAA-TCAAAGTTCG
* * * * * * * ** ** * *
1310115 TAC-CTCAAATGAGCCAAACAAGGATTCTAGTATTTA-TCTTCATTCATTTTGA-GATTACGCAC
64 T-CTCTTAAATAAGACAAACATGAATAC--GCATCAATTCCCCATTC-TTTTCATGATTAGGCAC
* * * * * * *
1310177 TATAAACACATTCTCCTCATTTGGATAAATGAT
125 CATAAACATAGTCTTCTCATTAGGATACACGAT
* ** * * * * * * *
1310210 ATTGATGATTTTCTTT-TGCATGGAAATCTTTTCTTTGCC-CTATTTTACTTA-AAAGCAAAGTT
1 ATTGATGCTTTGGTTTCT-TAAGAAAAGCTTTT-TTTTCCACCATTTT--TTATAAATCAAAGTT
* * * * * * * * * * * * * *
1310272 CATCCCTTAAATACGAAAAAGATCG-ATTCTCGTAACAGTCTCCATTCTTTTCAGGATTGGGAAC
62 CGTCTCTTAAATAAGACAAACAT-GAATACGCATCA-ATTCCCCATTCTTTTCATGATTAGGCAC
* * * ** *
1310336 C-TAAAACACATTC-CCTTCATTAGGATACTTGAC
125 CAT-AAACATAGTCTTC-TCATTAGGATACACGAT
* * * *
1310369 ATTGATGCTTTGGTGTTGC--AAGAAAAGCTTTTCTTTCTACCATTTTTGATAGAATCAAAGTTT
1 ATTGATGCTTTGGT-TT-CTTAAGAAAAGCTTTTTTTTCCACCATTTTTTATA-AATCAAAGTTC
* * * * * ** *
1310432 ATCTCCTAAATAAGACAGACATGAATACACAAACTCTTCCCCATTCTTTTCACGATTAGGCACCA
63 GTCTCTTAAATAAGACAAACATGAATACGC-ATCAATTCCCCATTCTTTTCATGATTAGGCACCA
*
1310497 TAAACTTAGTCTTCTC-TTCAGGATACACGAT
127 TAAACATAGTCTTCTCATT-AGGATACACGAT
* * * * * **
1310528 ATTGGTGCTTTGGTTTCTTAAGAAAGGC-TTTTTTCCCACAAATAATTATAAAGTCAAAGTTCGT
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCCACCATTTTTTATAAA-TCAAAGTTCGT
* * * * * * * ** * *
1310592 GC-CTCAAATGAGCCAGACAAGGATTTTA-GAAAT-AA-TCTTCATT-TACTTCGTGATTA--C-
65 -CTCTTAAATAAGACAAAC-ATGA--ATACG-CATCAATTCCCCATTCT-TTTCATGATTAGGCA
* * * * * *
1310649 GCAT-----TATTCTCCTCATTAGGGTAAATGAT
124 CCATAAACATAGTCTTCTCATTAGGATACACGAT
* * ** * * * * *
1310678 ACTGATGATTTTATTTTGCGT--GAAAATCTTTTCTTTACC-CTATTTTCCTTA-AAATAAAAGT
1 ATTGATG-CTTTGGTTT-CTTAAGAAAAGCTTTT-TTTTCCACCATTTT--TTATAAATCAAAGT
** * * * * * * * * * *
1310739 TTATCCCTTAAATAAGACAAGA-ATCG-ATTCTCTTAATATTCTCCATTCGTTTCAGGATTGGGA
61 TCGTCTCTTAAATAAGACAA-ACAT-GAATACGCATCA-ATTCCCCATTCTTTTCATGATTAGGC
* * * *
1310802 ACCA-AAACACATTC-CCTTCATTAGGATACACAAT
123 ACCATAAACATAGTCTTC-TCATTAGGATACACGAT
* * * * *
1310836 ATTGATGCTTTGGTGTCGTAAGAAAGGCTTTTCTTTT-CACCATTTTTGATAGAATCAAAGTTTG
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTT-TTTTCCACCATTTTTTATA-AATCAAAGTTCG
* *
1310900 CCTCTTAAATAAGACAAATATGAATA-GTCATACTAATT-CCCATTCTTTTCGA-GATTAGGCAC
64 TCTCTTAAATAAGACAAACATGAATACG-CAT-C-AATTCCCCATTCTTTTC-ATGATTAGGCAC
* * * *
1310962 CATAAACGTAGTTTTCTCATAAGGATGCACGAT
125 CATAAACATAGTCTTCTCATTAGGATACACGAT
* * * * ***** * * * * *
1310995 TTTAATTCTTTGGTTT-TGCT-AGAAAGGC-TTCCCCCCCCCCAAATTTTTGTCAAGTCTAAGTT
1 ATTGATGCTTTGGTTTCT--TAAGAAAAGCTTTTTTTTCCACC-ATTTTTTAT-AAATCAAAGTT
* * * * * * * * *
1311057 CGTGC-CTCAAATGAGCCAAAAAAGGATTATTG-ATC--TT---CATTCATATT-GTGATTAGGC
62 CGT-CTCTTAAATAAGAC-AAACATGAATA-CGCATCAATTCCCCATTC-TTTTCATGATTAGGC
* * * * * ** * * * *
1311114 ACTATGAACATATTCTCCACAACACGATAAATGGT
123 ACCATAAACATAGTCTTCTCATTAGGATACACGAT
* ** * * * * * * * *
1311149 ATTGATGATTTTTTTTGCGT--GGAAATCTTTTCTTTGCACTATTCTCCTTA-AAATAAAAGTTC
1 ATTGATGCTTTGGTTT-CTTAAGAAAAGCTTTTTTTTCCACCATT-T-TTTATAAATCAAAGTTC
* * * * * * * *
1311211 ATCCCTTAAATAAGACAAGCATCG-ATTCTCGA--AATAGTCTCCATTCTTTTCAGGATT-GTGA
63 GTCTCTTAAATAAGACAAACAT-GAATACGC-ATCAAT--TCCCCATTCTTTTCATGATTAG-GC
* * * ** *
1311272 ACCAAAAACACATTC-TCTTCATTAGGATACTTGAC
123 ACCATAAACATAGTCTTC-TCATTAGGATACACGAT
* * * * * * *
1311307 ATTGATGCTTTGG-TGCTGCT-ACAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATCGAAGTTC
1 ATTGATGCTTTGGTTTCT--TAAGAAAAGCTTTTTTTTCCACCATTTTTTATA-AATCAAAGTTC
* * * *
1311370 ATCTCTTAAATAAGACAAATATGAATACCCATACTATTCCCCATTCTTTTCATGATTAGGCACCA
63 GTCTCTTAAATAAGACAAACATGAATACGCAT-CAATTCCCCATTCTTTTCATGATTAGGCACCA
* *
1311435 TAAACTTAGTCTTCTCATTGGGATACACGAT
127 TAAACATAGTCTTCTCATTAGGATACACGAT
* * * * * * *
1311466 ATTGGTGCATTGGTTTCTTAAGAAAGGC--TTTTTTCCAACCAATTTTTGTAAGGTCTATA-TTC
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCC-ACCATTTTTTATAA-ATC-AAAGTTC
* * * * * * * *** ** * *
1311528 GTGC-CTCAAATGAGCCAAACAAGGATTC-TAGTGTTTATCTTCATTCATTTTGA-GATTACGCA
63 GT-CTCTTAAATAAGACAAACATGAATACGCA-TCAAT-TCCCCATTC-TTTTCATGATTAGGCA
* * * * * *
1311590 CTATAAACACATTCTCCTCTTTAGGATA-ACTTAT
124 CCATAAACATAGTCTTCTCATTAGGATACAC-GAT
* ** * * * * * * *
1311624 ATTGATGATTTTCTTTTGCGT--GGAAATCTTTTCTATGCC-CTATTTTACTTA-AAATCAATGT
1 ATTGATG-CTTTGGTTT-CTTAAGAAAAGCTTTT-TTTTCCACCATTTT--TTATAAATCAAAGT
* *** * * * * *
1311685 TCAT-TCCTTAAATAAGACAATGTTCG-ATCCTCAT-AATAGTCTCCATTCTTTTCAGGATTGGG
61 TCGTCT-CTTAAATAAGACAAACAT-GAATACGCATCAAT--TCCCCATTCTTTTCATGATTAGG
* * * * * ** *
1311747 AACC-TAAAACACATTC-CCTTCATTAGGGTACTTGAC
122 CACCAT-AAACATAGTCTTC-TCATTAGGATACACGAT
* * ** * ** ** *
1311783 ATAGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTCGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCCACCATTTTTTATA-AATCAAAGTTCGT
* ** ** * *
1311848 CTCTTAAATAAAACAAACATGAATACATATACTCTTCCCCATTCTTCTCACGATTAGGCACCATA
65 CTCTTAAATAAGACAAACATGAATACGCAT-CAATTCCCCATTCTTTTCATGATTAGGCACCATA
* * * * *
1311913 AACTTAGTCTTCTTATTAGCACACATGAT
129 AACATAGTCTTCTCATTAGGATACACGAT
* * * * * ** *
1311942 ATTGGTGCTTT-GTTTCCTAAG-AAAG-GTTTTTTTCTCACCAATTATGGTAAAGTCTAAGTTCG
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTC-CACCATTTTTTATAAA-TCAAAGTTCG
* * * * * * ** **
1312004 TGC-CTCAAATGAGACAAAAATGGATTC-CAGT-AGTGATCTTCATT-TATTTTGTGATTAGGCA
64 T-CTCTTAAATAAGACAAACATGAATACGCA-TCAAT--TCCCCATTCT-TTTCATGATTAGGCA
* * * * * * * * *
1312065 CTATGAACACATTCTGCTCTTTAGCATAAATGAT
124 CCATAAACATAGTCTTCTCATTAGGATACACGAT
* ** * * * * * * *
1312099 ATTGATGATTTTCTTTTGCGT-GGAAAA-CTTTTCTTTGC-CTATTTACCTTA-AAATTAAAGTT
1 ATTGATG-CTTTGGTTT-CTTAAGAAAAGCTTTTTTTTCCACCATTT--TTTATAAATCAAAGTT
* * * * * * * * * * * *
1312160 CATCCCTTAAATTAGACAAGCATCG-ATTCTCGT-AATAGTCTCCAGTCTTTTCAGGATTGGGAA
62 CGTCTCTTAAATAAGACAAACAT-GAATACGCATCAAT--TCCCCATTCTTTTCATGATTAGGCA
* * * * ** *
1312223 CCAAAAACACATTC-CCTTCATTAGGATACTTGAC
124 CCATAAACATAGTCTTC-TCATTAGGATACACGAT
* * ** * *
1312257 ATTGATGCTTTGGTTGC-CAA-AAAAGCTTTTCATTCCACCATTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCCACCATTTTTTATA-AATCAAAGTTCGT
* * * * *
1312320 CTCTTAAATAAGACAAACATGAATACTCATACTAGTCCCCATTCTTTTCGTGATTAAGCACCATA
65 CTCTTAAATAAGACAAACATGAATACGCAT-CAATTCCCCATTCTTTTCATGATTAGGCACCATA
* *
1312385 AACTTAGTCTTCTTATTAGGATACACGAT
129 AACATAGTCTTCTCATTAGGATACACGAT
* * * * * * *
1312414 ATTGGTGCTTTGGTTTCTTAAGAAAGGC-TTTTTCTCCTACCAATTTTTGTAAAGTCTAAGTTCA
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCC-ACCATTTTTTATAAA-TCAAAGTTCG
* * * * * * * ** ** * **
1312478 TGC-CTCAAATAAGCCAAACAAGGATTCTAGTATTAA-TCTTCATT-TATTTTGTGATTCGGTGC
64 T-CTCTTAAATAAGACAAACATGAATAC--GCATCAATTCCCCATTCT-TTTCATGATTAGGCAC
* * * *
1312540 TATAAACACATTC-TCTTCATTAGGATA-ACTTAT
125 CATAAACATAGTCTTC-TCATTAGGATACAC-GAT
* * ** * * * * **
1312573 ATTGATGATTT--TTTTTTGCGTGAAAATCTTTTCTATGCC-CTATTTTTCT-TAAAATCATTGT
1 ATTGATGCTTTGGTTTCTT--AAGAAAAGCTTTT-TTTTCCACCATTTTT-TAT-AAATCAAAGT
* ** * * * * * * * * *
1312634 TCATCTCTTAAATAAGACAAGGATG-ATTCTCGTAACAGTCTCCATTCTTTTTAGGATTAGGAAC
61 TCGTCTCTTAAATAAGACAAACATGAATACGCATCA-ATTCCCCATTCTTTTCATGATTAGGCAC
* * * * ** *
1312698 C-TAAAACACATTC-CCTTCATTAGGGTACTTGAC
125 CAT-AAACATAGTCTTC-TCATTAGGATACACGAT
* ** * * *
1312731 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCCACCATTTTTTATA-AATCAAAGTTCGT
* ** ** **
1312796 CTCTTAAATAAGAAAAACATGAATACATATACTCTTCCCCATTCTTTTCACAATTAGGCACCATA
65 CTCTTAAATAAGACAAACATGAATACGCAT-CAATTCCCCATTCTTTTCATGATTAGGCACCATA
*
1312861 AACTTAGTCTTCTCATTAGGATACACGAT
129 AACATAGTCTTCTCATTAGGATACACGAT
* * * * * * *
1312890 ATTGGTGCTATGGATTCTTAAGAAAAGCTTTTTTCT-CACCAATTTTTGTAAAGTCTAAGTTCGT
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCCACCATTTTTTATAAA-TCAAAGTTCGT
* * * * * * * *
1312954 GC-CTCAAATGAGACAAACATGGATTC-CAATGTTGATATT---TATTAATTTT-GTGATTAGGC
65 -CTCTTAAATAAGACAAACATGAATACGC-A---TCA-ATTCCCCATT-CTTTTCATGATTAGGC
* * * * *
1313013 ACTATGAACACA-TCCTTCTCATTAGGATAAATGAT
123 ACCATAAACATAGT-CTTCTCATTAGGATACACGAT
* ** * * * *
1313048 ATTGATGATTTTATTTTGCGT-GGAAAA-CTTTTCTTTGT-C-CTATTTTCCTTA-AAATCAATG
1 ATTGATG-CTTTGGTTT-CTTAAGAAAAGCTTTT-TTT-TCCACCATTTT--TTATAAATCAAAG
* * * * * * ** *
1313108 TTCATC-CTTTAAATAAGACAAGCATCGACT-CTCGT-AATGGTCTCCATTCTTTTCCGGATTGG
60 TTCGTCTC-TTAAATAAGACAAACAT-GAATACGCATCAAT--TCCCCATTCTTTTCATGATTAG
* * * * ** *
1313170 GAACCAAAAACACATTC-TCTTCATTAGGATACTTGAC
121 GCACCATAAACATAGTCTTC-TCATTAGGATACACGAT
* * *** * * * *
1313207 ATTGATGCTTTGG-TGCTGCT-AGAAATGCCCCTTTTTCCATCGTTTTTGATAGAATTAAAGTTC
1 ATTGATGCTTTGGTTTCT--TAAGAAAAGCTTTTTTTTCCACCATTTTTTATA-AATCAAAGTTC
* * * * *
1313270 GACTCTTAAATAA-AAAAAGCATGAATACTCATACTATTCCCCATTCTTTTCTTGATTAGGCACC
63 GTCTCTTAAATAAGACAAA-CATGAATACGCAT-CAATTCCCCATTCTTTTCATGATTAGGCACC
* * * ** *
1313334 ACAAACTTAGTCTTCACCGTAGGATACATGAT
126 ATAAACATAGTCTTCTCATTAGGATACACGAT
* * * * * * ** *
1313366 ATTGGTACTTTGGTTTCTTAAGAAAGGC-TTTTTTTCCTCCAATTTTGTA-AAGTTTAAGTCCGT
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCCACC-ATTTTTTATAAATCAAAGTTCGT
* * * * * * ** ** * * *
1313429 ACGTC--AAATGAGCCAAACAAGGATTCTAGTATTTA-TCTTCTTTCATTTT-GTGATTATGCAC
65 -C-TCTTAAATAAGACAAACATGAATAC--GCATCAATTCCCCATTC-TTTTCATGATTAGGCAC
* * * * **
1313490 TATAAACACA-TTTTCCTTATTAGGATA-AATATT
125 CATAAACATAGTCTT-CTCATTAGGATACACGA-T
* ** *** * * * * *
1313523 ATTGATGATTTTCTTT-TGCGCGAAAATCTTTTCTATGCCA-TATTTTGCTTA-AAATCAATGTT
1 ATTGATGCTTTGGTTTCT-TAAGAAAAGCTTTT-TTTTCCACCATTTT--TTATAAATCAAAGTT
* * ** * * * * * * * * *
1313585 CAT-TCCTTAAAAAAGACAAGGATCG-ATTCTCGTAACAGTCTCTATTCTTTTCAGGATTAGGAA
62 CGTCT-CTTAAATAAGACAAACAT-GAATACGCATCA-ATTCCCCATTCTTTTCATGATTAGGCA
* ** *
1313648 CC-TAAAACCTA-T-TTCCTTCATTAGGATACTTGAC
124 CCAT-AAACATAGTCTT-C-TCATTAGGATACACGAT
* * ** * ** * *
1313682 ATTGATGCTTTGATGTCACAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATTAAAGTTCGT
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCCACCATTTTTTATA-AATCAAAGTTCGT
* ** * *
1313747 CTATTAAATAAGACAAACATGAATATTCATACTATTCCACATTCTTTTCATGATTAGGCACCATA
65 CTCTTAAATAAGACAAACATGAATACGCAT-CAATTCCCCATTCTTTTCATGATTAGGCACCATA
* * * * *
1313812 ACCTTAGTCTTCACCTTAGGATACATG--
129 AACATAGTCTTCTCATTAGGATACACGAT
* * * * * *
1313839 ATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTTCCCACCAATTTTTGTAT-AGTCTAAGTTCA
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCCACC-ATTTTT-TATAAATCAAAGTTCG
* * * * * * * ** ** * *
1313903 TGC-CTCAAATGAGCCAAACAAGGATTCTAGTATTTA-TCTTCATTCATTTTGA-GATTACGCAC
64 T-CTCTTAAATAAGACAAACATGAATAC--GCATCAATTCCCCATTC-TTTTCATGATTAGGCAC
* * * * * * * *
1313965 TATAAATACATTCTCCTCATTAGCATAAATGAT
125 CATAAACATAGTCTTCTCATTAGGATACACGAT
* * * * * * * ** *
1313998 ATTGATGATTTTGTTTTGCGT--GGAAATC-TTTTGTACGTCTTATTTTACTTA-AAATCAAAGT
1 ATTGATG-CTTTGGTTT-CTTAAGAAAAGCTTTTTTTTCCAC-CATTTT--TTATAAATCAAAGT
* * * ** * * * * * * *
1314059 TCATCCCTTAAATAAGACAAGCATCG-ACCCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAA
61 TCGTCTCTTAAATAAGACAAACAT-GAATACGCATCA-ATTCCCCATTCTTTTCATGATTAGGCA
* * * * ** *
1314123 CCAAAAACACATTC-TCTTCATTAAGATACTTGAC
124 CCATAAACATAGTCTTC-TCATTAGGATACACGAT
* * * * *
1314157 ATTGATGCCTTGG-TGCTGCT-AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTC
1 ATTGATGCTTTGGTTTCT--TAAGAAAAGCTTTTTTTTCCACCATTTTTTATA-AATCAAAGTTC
* * * * * *
1314220 ATCTCTTAAATAAGACAAACATGAATACTCATACTATTTCCCAATCTTCTCATGATTAGGCACCA
63 GTCTCTTAAATAAGACAAACATGAATACGCAT-CAATTCCCCATTCTTTTCATGATTAGGCACCA
* * *
1314285 TAAA-ATTTGTCTTCTCCTTAGGATACATGAT
127 TAAACA-TAGTCTTCTCATTAGGATACACGAT
* * * * *
1314316 ATTGGTGCTTTGCTTTCTTAAGAAAGGC--TTTTTTCCAACCAATTTTTGTAAAGTCTAAA-TTC
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCC-ACCATTTTTTATAAA-TC-AAAGTTC
** * * * * * * * * ** * * *
1314378 GTGC-CTCCAATGAGCCAAGCAAGGATTCCAGTATTAA-TCTTCATTCATTTCATCATTACGC-C
63 GT-CTCTTAAATAAGACAAAC-ATGAATAC-GCATCAATTCCCCATTCTTTTCATGATTAGGCAC
* * * * * * * *
1314440 CAATAAATACATTATCCTCATTAGTATAAATGAT
125 C-ATAAACATAGTCTTCTCATTAGGATACACGAT
* ** * * * *
1314474 ATTGATGATTTTCTTT-TGCATGAAATGCTTTTTTATGT-C-CTATTTTACTTA-AAATCAAAGT
1 ATTGATGCTTTGGTTTCT-TAAGAAAAGCTTTTTT-T-TCCACCATTTT--TTATAAATCAAAGT
* * * * * * * * * * * *
1314535 TCATCCCTTAAA-AAGACAAGCATCG-ATTC-TAGTAACAGTCTCTATTCTTTTCAGGATTGGGA
61 TCGTCTCTTAAATAAGACAAACAT-GAATACGCA-TCA-ATTCCCCATTCTTTTCATGATTAGGC
* * * * *
1314597 ACC-TAAAACACT-TTC-CCTTCGTTAGGATACATGAC
123 ACCAT-AAACA-TAGTCTTC-TCATTAGGATACACGAT
* ** * * * *
1314632 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACCATTTTTTATAAGGTCAAAGTTTGT
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCCACCATTTTTTATAA-ATCAAAGTTCGT
* ** * *
1314697 CTTTTAAATAAGACAAACATGAATAATCAT-AGTAATCCCCATTCTTTT-ATGTATTAGGTACCA
65 CTCTTAAATAAGACAAACATGAATACGCATCA--ATTCCCCATTCTTTTCATG-ATTAGGCACCA
* * *
1314760 CAAACATAGTCTTCTCAATAGGATATACGAT
127 TAAACATAGTCTTCTCATTAGGATACACGAT
* ** * * *
1314791 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCCACCATTTTTTATA-AATCAAAGTTCGT
* * ** ** *
1314856 CTCTTAAATAAGACAAACATGAAGACACATACTCTTCCCCATTCTTTTCGCGATTAAGCACCATA
65 CTCTTAAATAAGACAAACATGAATACGCAT-CAATTCCCCATTCTTTTCATGATTAGGCACCATA
* *
1314921 AACTTAGTCTTCTCATTAGGATGCACGAT
129 AACATAGTCTTCTCATTAGGATACACGAT
* * * * ** *
1314950 ATTGGTGCTTTGGATTCTTAAGAAAGGCTTTTTTCT-CACCAAATTTTATAAAGTCTAAGTTCGT
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCCACCATTTTTTATAAA-TCAAAGTTCGT
* *** * * * * * ** * *
1315014 CCCACGAATGAGACAAACATGGATTCTAGTATTAA-TCTTCATTCATTTT-GTGATTAGGCACTA
65 CTCTTAAATAAGACAAACATGAATAC--GCATCAATTCCCCATTC-TTTTCATGATTAGGCACCA
* * * *
1315077 TGAACACA---TTCTCATTAGGATAAATGAT
127 TAAACATAGTCTTCTCATTAGGATACACGAT
* * ** * *
1315105 ATTAATGATTTTCTTTTGCGTT--GAAATA--TTTTCTTTGCCTTA-C-TTTCCTTA-AAATCAA
1 ATTGATG-CTTTGGTTT-C-TTAAGAAA-AGCTTTT-TTTTCC--ACCATTT-TTTATAAATCAA
* * * * * * * * *
1315163 AGTTCATCCCTTAAAT-AGTCAAGCATCG-ATTCTCAT-AATAGTCTCCATTCTTTTCAAGATTG
58 AGTTCGTCTCTTAAATAAGACAAACAT-GAATACGCATCAAT--TCCCCATTCTTTTCATGATTA
* * * * * *
1315225 GGAACCAAAAACACATTC-CCTTCATTAGGATAC-CTAAT
120 GGCACCATAAACATAGTCTTC-TCATTAGGATACAC-GAT
** * * *
1315263 ATTGATGCACTGG-TGCTACTAA-AAAAGCTTTTTTTTCCACCGTTTTTTATAGAATCCAAGTTC
1 ATTGATGCTTTGGTTTCT--TAAGAAAAGCTTTTTTTTCCACCATTTTTTATA-AATCAAAGTTC
*
1315326 ATCTCTTAAATAAGACAAACATGAATACGCATGCAATTCCCCATTCTTTTCATGATTAGGCACCA
63 GTCTCTTAAATAAGACAAACATGAATACGCAT-CAATTCCCCATTCTTTTCATGATTAGGCACCA
**
1315391 TAAATTTAGTCTTCTCATTAGGATACACGAT
127 TAAACATAGTCTTCTCATTAGGATACACGAT
* * * ** * * *
1315422 ATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCTCCCAAAATTTTGTA-AAGTCTAAGTTCGT
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTT-TTCCACCATTTTTTATAAATCAAAGTTCGT
* * * * * * * * * ** **
1315486 AC-CTCAAATGAGCCAAACAAGGATTC-TATTATTAATCTTCATT-TATTTTGTGATTCA-GCAC
65 -CTCTTAAATAAGACAAACATGAATACGCATCA--ATTCCCCATTCT-TTTCATGATT-AGGCAC
* * * * * * * *
1315547 TACAAGCACATTCTCCTCATTAGGATAAATGAT
125 CATAAACATAGTCTTCTCATTAGGATACACGAT
* ** * * * * *
1315580 GTTGATAATTT--TTTTTTGCATGAAAATCTTTTCTTTGCC-CGATTTTCCTTA-AAATCAAAGT
1 ATTGATGCTTTGGTTTCTT--AAGAAAAGCTTTT-TTTTCCACCATTTT--TTATAAATCAAAGT
* * * * * * * * * * * *
1315641 ACATCCCTTAAATAAGACATACATCAATTCTCAT-AATAGTCTCCATTCCTTTC-TGGAATGGGA
61 TCGTCTCTTAAATAAGACAAACATGAATACGCATCAAT--TCCCCATTCTTTTCAT-GATTAGGC
* * * * *
1315704 ACCA-AAAGCACA-T-TTCCTTCATTAAGATGCAAGAC
123 ACCATAAA-CATAGTCTT-C-TCATTAGGATACACGAT
* * ** * * * *
1315739 ATTTATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTC-TTTTTGATAGAGTCAAAGTTTG
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCCAC-CATTTTTTATA-AATCAAAGTTCG
* * ** * *
1315803 TCTCTTAAATAAGACAAACATGAATACACAAACTCTTCCCCATTATTTTCAAGATTAGGCACCAT
64 TCTCTTAAATAAGACAAACATGAATACGC-ATCAATTCCCCATTCTTTTCATGATTAGGCACCAT
*
1315868 AAACTTAGTCTTCTCATTAGGATACACGAT
128 AAACATAGTCTTCTCATTAGGATACACGAT
* * * * *
1315898 ATTGGTGCTTTGGATTCTTAAGAAAGGCTTTTTTCT-CACCAATTTTT
1 ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCCACCATTTTTT
1315945 GTAATGTCTA
Statistics
Matches: 4074, Mismatches: 1381, Indels: 877
0.64 0.22 0.14
Matches are distributed among these distances:
148 2 0.00
149 1 0.00
150 30 0.01
151 47 0.01
152 18 0.00
153 33 0.01
154 60 0.01
155 82 0.02
156 91 0.02
157 483 0.12
158 1215 0.30
159 1815 0.45
160 154 0.04
161 41 0.01
162 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (157 bp):
ATTGATGCTTTGGTTTCTTAAGAAAAGCTTTTTTTTCCACCATTTTTTATAAATCAAAGTTCGTC
TCTTAAATAAGACAAACATGAATACGCATCAATTCCCCATTCTTTTCATGATTAGGCACCATAAA
CATAGTCTTCTCATTAGGATACACGAT
Found at i:1315885 original size:476 final size:474
Alignment explanation
Indices: 1314791--1318282 Score: 4139
Period size: 476 Copynumber: 7.4 Consensus size: 474
1314781 GATATACGAT
*
1314791 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* ** *
1314856 CTCTTAAATAAGACAAACATGAAGACACATACTCTTCCCCATTCTTTTCGCGATTAAGCACCATA
66 CTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCATGATTAGGCACCATA
* *
1314921 AACTTAGTCTTCTCATTAGGATGCACGATATTGGTGCTTTGGATTCTTAAGAAAGGCTTTTTTCT
131 AACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCT
* * * * * * *
1314986 CACCAAATTTTATAAAGTCTAAGTTCGTCCCACGAATGAGACAAACATGGATTCTAGTATTAATC
196 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAATC
* *
1315051 TTCATTCATTTTGTGATTAGGCACTATGAACACA-T-T-CTCATTAGGATAAATGATATTAATGA
261 TTCATTTATTTTGTGATTAGGCACTA-GAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * *
1315113 TTTTCTTTTGCGTTG-AAATATTTTCTTTGCCTTACTTTCCTTAAAATCAAAGTTCATCCCTTAA
325 TTTTCTTTTGCG-TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
* *
1315177 AT-AGTCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAT
389 ATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAGGATTGGGAACC-AAAACACAT
* * * *
1315241 TCCCTTCATTAGGATACCTAAT
453 TTCCTTCATTAGGATACTTGAC
** * * * * * *
1315263 ATTGATGCACTGGTGCTAC-TAA-AAAAGCTTTTTTTTCCACCGTTTTTTATAGAATCCAAGTTC
1 ATTGATGCTTTGGTG-T-CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * * **
1315326 ATCTCTTAAATAAGACAAACATGAATACGCATGCAATTCCCCATTCTTTTCATGATTAGGCACCA
64 GTCTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCATGATTAGGCACCA
*
1315391 TAAATTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTT
129 TAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTT
* * *
1315456 CTC-CCAAAATTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGCCAAACAAGGATTCTATTATTA
194 CTCACC-AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTA
* *
1315520 ATCTTCATTTATTTTGTGATTCA-GCACTACAAGCACATTCTCCTCATTAGGATAAATGATGTTG
258 ATCTTCATTTATTTTGTGATT-AGGCACTAGAA-CACATTCTCCTCATTAGGATAAATGATATTG
* * * * *
1315584 ATAATTTTTTTTTGCATGAAAATCTTTTCTTTGCCCGATTTTCCTTAAAATCAAAGTACATCCCT
321 ATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* * * *
1315649 TAAATAAGACATA-CATCAATTCTCATAATAGTCTCCATTCCTTTCTGGAATGGGAACCAAAAGC
386 TAAATAAGACA-AGCATCGATTCTCATAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAA-C
* * **
1315713 ACATTTCCTTCATTAAGATGCAAGAC
449 ACATTTCCTTCATTAGGATACTTGAC
* *
1315739 ATTTATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTC-TTTTTGATAGAGTCAAAGTTTG
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTTTGATAGAATCAAAGTTTG
* * *
1315803 TCTCTTAAATAAGACAAACATGAATACACAAACTCTTCCCCATTATTTTCAAGATTAGGCACCAT
65 TCTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCATGATTAGGCACCAT
*
1315868 AAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGATTCTTAAGAAAGGCTTTTTTC
130 AAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTC
*
1315933 TCACCAATTTTTGTAATGTCTAAGTT--TG-------T----C---C-A-G--TC-----TTAAT
195 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAAT
* * * *
1315973 CTTCATTCATTTTGTGATTAGGCACTGTGAACACATTCTCCTTATTGGGATAAATGATATT-AGT
260 CTTCATTTATTTTGTGATTAGGCACT-AGAACACATTCTCCTCATTAGGATAAATGATATTGA-T
*
1316037 GATTTTCTTTTACGTAGAAAA-CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
323 GATTTTCTTTTGCGT-GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
* * * * * * *
1316101 AAATAAGACAGGCTTTGACTCTCATAATGGTCTCCATTCTATTCAGGATTGGGGACCAAAAACAC
387 AAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAGGATTGGGAACC-AAAACAC
*
1316166 A-TTCTCTTCATTTGGATACTTGAC
451 ATTTC-CTTCATTAGGATACTTGAC
** * ** *
1316190 ATTGATGCTTTGGTG-CTGTTAGAAAAGCTTTTCATTCCACTGTTTTTTATAGAATCAAAGTTTG
1 ATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* ** * *
1316254 TCTCTTAAATAAGACAAACATGAATACTCATACTAGTCCCCATTCTTTTCGTGATTAAGCACCAT
65 TCTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCATGATTAGGCACCAT
1316319 AAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTC
130 AAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTC
* * *
1316384 -CTACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCATAGAAGGATTCTAGTATTAA
195 TC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAA
* ** * * * *
1316448 TCTTCATTTATTTTGTGATTCGGTGCTATAAACACATTCTCCTCAATAGGATAACTTATATTGAT
259 TCTTCATTTATTTTGTGATTAGGCACTA-GAACACATTCTCCTCATTAGGATAAATGATATTGAT
* *
1316513 GATTTTCTTTTGCGTGAAAATCTTTTCTATGCCCTATTTTCCTTAAAATCAATGTTCATCCCTTA
323 GATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
* * * *
1316578 AATAAGACAAGGAT-GATTCTCGTAACAGTCTCCATTCTTTTCAGGATTAGGAACCGAAAACACA
388 AATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAGGATTGGGAACC-AAAACACA
* *
1316642 TTCCCTTCATTAGGGTACTTGAC
452 TTTCCTTCATTAGGATACTTGAC
* *
1316665 ATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* * **
1316730 CTCTTAAATAAGAAAAACATGAATACATATACTCTTCCCCATTCTTTTCACAATTAGGCACCATA
66 CTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCATGATTAGGCACCATA
* * *
1316795 AACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTATGGATTCTTAAGAAAAGCTTTTTTCT
131 AACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCT
* * * * * * * *
1316860 CACCAATTTTTGTAAATTCTAAGTTGGTGCCTCAAATGAGACAAACATGGATTCCAATGTTGATC
196 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAATC
* * *
1316925 TTTATTCT-TTTTGTGATTAGGCACTATGAACACATCCTTCTCATTAGGATAAATGATATTGATG
261 TTCATT-TATTTTGTGATTAGGCACTA-GAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * * *
1316989 ATTTTATTTTGCGTGGAAAA-CTTTTCTTTGTCCTATTTTTCTTAAAATCAATGTTCATCCCTTA
324 ATTTTCTTTTGCGT-GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
* * *
1317053 AATAAGACAAGCATCGACTCTCGTAATGGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACA
388 AATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAGGATTGGGAACC-AAAACACA
1317118 -TTCTCTTCATTAGGATACTTGAC
452 TTTC-CTTCATTAGGATACTTGAC
* * ** **
1317141 ATTGATGCTTTGGTG-CTGCTAGAAATGCCCTTCTTTCCACCATTTTTGATAGAATCAAAGTTCC
1 ATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* * * * * *
1317205 ACTCTCAAATAAAACAAACATGAATACTCATACTATTCACCATTCTTTTCATGATTAGGCACCAT
65 TCTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCATGATTAGGCACCAT
* * * *
1317270 AAACTTAGTCTTCACCTTAGGATACATGATATTGGTGTTTTGGTTTCTTAAGAAAGGCTTTTTTC
130 AAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTC
* * * * *
1317335 TCTCCAATTTTTTTAAAGTCTAAGTTCGTGCCTCAAATAAGCCAAACAAGCATTCTAGTATTTAT
195 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAAT
* * * * *
1317400 CTTC-TTTCATTTTGTGGTTATGCACTATAAACACATTCTCCCCATTAGGATAAATAATATTGAT
260 CTTCATTT-ATTTTGTGATTAGGCACTA-GAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * * *
1317464 GATTTTCTTTTGCGTGAAAATCTTTTCTATGCCATATTTTGCTTAAAATCAATGTTCATCCCTTG
323 GATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT-
* * * * * *
1317529 AAA-AAGAAAAGGATTGATTCTCGTAATAGTCTCC-TGTCTTTTGAGGATTGGGAACCTAAAACC
387 AAATAAGACAAGCATCGATTCTCATAATAGTCTCCAT-TCTTTTCAGGATTGGGAACC-AAAACA
*
1317592 CATTCCCTTCATTAGGATACTTGAC
450 CATTTCCTTCATTAGGATACTTGAC
* * * * * *
1317617 ATTAATTCCTTGGTGTCACAAGAAAAGCTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* * *
1317682 CTCTTAAGTAAGACAAACATGAATACATATACTCTTCCCCATTCTTTTCACGATTAGGCACCATA
66 CTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCATGATTAGGCACCATA
* * * *
1317747 AACTTAGTCCTT-TCGTTAGGATACATGATATTGGTGCTTTAGTTTCTTAAAAAAGGCTTTTTTC
131 AACTTAGT-CTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTC
* * * * * *
1317811 CCACCAATTTTTGTGAAGTTTAAGTTCATGCCTCAAATGAGCCAAACAAGGATACTAGTAATAAT
195 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAAT
* * * * ** * * * *
1317876 GTTTATTCATGTCATCATTACGCACATTA-AATACATTCTCCTCATTAGGATAAATGATGTTGAT
260 CTTCATTTATTTTGTGATTAGGCAC--TAGAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * *
1317940 GATTTTCTTTTGCGTGAAAAGT-TTTTCTATGCCATATTTTTCTTAAAATCAAAGTTCATCCCTT
323 GATTTTCTTTTGCGTGAAAA-TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
* * * *
1318004 AAA-AAGACAAGCATCGATTCT-AGAAATAGTCTCTATTCTATTCGGGATTGGGAACCTAAAACA
387 AAATAAGACAAGCATCGATTCTCA-TAATAGTCTCCATTCTTTTCAGGATTGGGAACC-AAAACA
*
1318067 C-TTTCCCTTCATTAGGATACATGAC
450 CATTT-CCTTCATTAGGATACTTGAC
* * * * *
1318092 ATTGACGCTTTGGTGTTGCAAGGAAAGCTTTTCTTTCCACCATTTTTGATA-AGGTCAAAGTTTA
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGA-ATCAAAGTTTG
* * ** * * * *
1318156 TCTTTTAAATAAGACAAACATGAATA-ATCATAGTAATCCCCATTCTATT-ATGTATTACGTACA
65 TCTCTTAAATAAGACAAACATGAATACA-CATACTCTTCCCCATTCTTTTCATG-ATTAGGCACC
* * * * * * * ** *
1318219 ACAAACATAGTCTTCTCATTAGGATATACAATATTGATTCTTTGGTGTCACAAGAAAAGCTTTT
128 ATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTT
1318283 CTTTCCACTG
Statistics
Matches: 2579, Mismatches: 360, Indels: 159
0.83 0.12 0.05
Matches are distributed among these distances:
450 7 0.00
451 369 0.14
452 11 0.00
453 2 0.00
456 2 0.00
458 1 0.00
459 1 0.00
460 2 0.00
463 1 0.00
464 1 0.00
467 1 0.00
468 1 0.00
469 1 0.00
471 6 0.00
472 251 0.10
473 5 0.00
474 16 0.01
475 719 0.28
476 1163 0.45
477 17 0.01
478 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (474 bp):
ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
CTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCTTTTCATGATTAGGCACCATA
AACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCT
CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTAATC
TTCATTTATTTTGTGATTAGGCACTAGAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
TTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
AAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAACACATTTC
CTTCATTAGGATACTTGAC
Found at i:1316373 original size:159 final size:158
Alignment explanation
Indices: 1316052--1323182 Score: 1998
Period size: 159 Copynumber: 45.0 Consensus size: 158
1316042 TCTTTTACGT
* * **
1316052 AGAAAA-CTTTTCTTTGCC-CTATTTTCCTTA-AAATCAAAGTTCATCCCTTAAATAAGACAGGC
1 AGAAAAGCTTTTCTTT-CCACTATTTT--TTATAAATCAAAGTTCGTCTCTTAAATAAGACAAAC
* * * * * * * * *
1316114 TTTG-ACTCTCATAATGGTCTCCATTCTATTCAG-GATTGGGGACCAAAAACACATTC-TCTTCA
63 -ATGAATTCTCATACTAGTCTCCATTCTTTTC-GTGATTAGGCACCATAAACATATTCTTC-TCA
* * * * *
1316176 TTTGGATACTTGACATTGATGCTTTGG-TGCTGTT
125 TTAGGATACATGATATTGATGCTTTGGTTTCT-TA
* * *
1316210 AGAAAAGCTTTTCATTCCACTGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
1 AGAAAAGCTTTTCTTTCCACTATTTTTTATA-AATCAAAGTTCGTCTCTTAAATAAGACAAACAT
* * * * *
1316275 GAATACTCATACTAGTCCCCATTCTTTTCGTGATTAAGCACCATAAACTTAGTCTTCTCATTAGG
65 GAATTCTCATACTAGTCTCCATTCTTTTCGTGATTAGGCACCATAAACATATTCTTCTCATTAGG
* *
1316340 ATACACGATATTGGTGCTTTGGTTTCTTA
130 ATACATGATATTGATGCTTTGGTTTCTTA
* * * * * * * * * * *
1316369 AGAAAGGC-TTT-TTTCCTACCAATTTTTGTAAAGTCTAAGTTCATGC-CTCAAATGAGCCATAG
1 AGAAAAGCTTTTCTTTCC-ACTATTTTTTATAAA-TCAAAGTTCGT-CTCTTAAATAAGACAAAC
* * * * * * * ** * * * *
1316431 AAGGATTCT-AGTATTAATCTTCATT-TATTTTGTGATTCGGTGCTATAAACACATTCTCCTCAA
63 ATGAATTCTCA-TACTAGTCTCCATTCT-TTTCGTGATTAGGCACCATAAACATATTCTTCTCAT
* * ** *
1316494 TAGGATA-ACTTATATTGATGATTTTCTTTTGCGT-
126 TAGGATACA-TGATATTGATG-CTTTGGTTT-CTTA
* * * * * **
1316528 -GAAAATCTTTTCTATGCC-CTATTTTCCTTA-AAATCAATGTTCATCCCTTAAATAAGACAAGG
1 AGAAAAGCTTTTCT-TTCCACTATTTT--TTATAAATCAAAGTTCGTCTCTTAAATAAGACAAAC
* * * *
1316590 ATG-ATTCTCGTAAC-AGTCTCCATTCTTTTCAG-GATTAGGAACCGA-AAACACATTC-CCTTC
63 ATGAATTCTCAT-ACTAGTCTCCATTCTTTTC-GTGATTAGGCACC-ATAAACATATTCTTC-TC
* * * * * **
1316650 ATTAGGGTACTTGACATTGATACTTTGGTGTCACA
124 ATTAGGATACATGATATTGATGCTTTGGTTTCTTA
* * * *
1316685 AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACAT
1 AGAAAAGCTTTTCTTTCCACTATTTTTTATA-AATCAAAGTTCGTCTCTTAAATAAGACAAACAT
* ** * *** * *
1316750 GAATACAT-ATACTCTTCCCCATTCTTTTCACAATTAGGCACCATAAACTTAGTCTTCTCATTAG
65 GAATTC-TCATACTAGTCTCCATTCTTTTCGTGATTAGGCACCATAAACATATTCTTCTCATTAG
* * * *
1316814 GATACACGATATTGGTGCTATGGATTCTTA
129 GATACATGATATTGATGCTTTGGTTTCTTA
* * * * * * *
1316844 AGAAAAGC-TTT-TTTCTCACCAATTTTTGTAAATTCTAAGTTGGTGC-CTCAAATGAGACAAAC
1 AGAAAAGCTTTTCTTTC-CACTATTTTTTATAAA-TCAAAGTTCGT-CTCTTAAATAAGACAAAC
* * * ** * * * * *
1316906 ATGGATTC-CA-ATGTTGATCTTTATTCTTTTTGTGATTAGGCACTATGAACACATCCTTCTCAT
63 ATGAATTCTCATA-CTAG-TCTCCATTCTTTTCGTGATTAGGCACCATAAACATATTCTTCTCAT
* * ** *
1316969 TAGGATAAATGATATTGATGATTTTATTTTGCGT-
126 TAGGATACATGATATTGATG-CTTTGGTTT-CTTA
* * * * * *
1317003 GGAAAA-CTTTTCTTTGTC-CTATTTTTCT-TAAAATCAATGTTCATCCCTTAAATAAGACAAGC
1 AGAAAAGCTTTTCTTT-CCACTATTTTT-TAT-AAATCAAAGTTCGTCTCTTAAATAAGACAAAC
* * * * * * * *
1317065 ATCG-ACTCTCGTAATGGTCTCCATTCTTTTCAG-GATTGGGAACCAAAAACACATTC-TCTTCA
63 AT-GAATTCTCATACTAGTCTCCATTCTTTTC-GTGATTAGGCACCATAAACATATTCTTC-TCA
* * *
1317127 TTAGGATACTTGACATTGATGCTTTGG-TGCTGCT-
125 TTAGGATACATGATATTGATGCTTTGGTTTCT--TA
* ** * * ** * *
1317161 AGAAATGCCCTTCTTTCCACCATTTTTGATAGAATCAAAGTTCCACTCTCAAATAAAACAAACAT
1 AGAAAAGCTTTTCTTTCCACTATTTTTTATA-AATCAAAGTTCGTCTCTTAAATAAGACAAACAT
* * * * * * * *
1317226 GAATACTCATACTATTCACCATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTCACCTTAGG
65 GAATTCTCATACTAGTCTCCATTCTTTTCGTGATTAGGCACCATAAACATATTCTTCTCATTAGG
* *
1317291 ATACATGATATTGGTGTTTTGGTTTCTTA
130 ATACATGATATTGATGCTTTGGTTTCTTA
* * * * *
1317320 AGAAAGGCTTTT-TTCTCTC-CAATTTTTT-TAAAGTCTAAGTTCGTGC-CTCAAATAAGCCAAA
1 AGAAAAGCTTTTCTT-TC-CACTATTTTTTATAAA-TCAAAGTTCGT-CTCTTAAATAAGACAAA
* * * * * * * * * * *
1317381 CAAGCATTCT-AGTATTTA-TCTTCTTTCATTTT-GTGGTTATGCACTATAAACACATTCTCCCC
62 CATGAATTCTCA-TA-CTAGTCTCCATTC-TTTTCGTGATTAGGCACCATAAACATATTCTTCTC
* * * ** *
1317443 ATTAGGATAAATAATATTGATGATTTTCTTTTGCGT-
124 ATTAGGATACATGATATTGATG-CTTTGGTTT-CTTA
* * * * *
1317479 -GAAAATCTTTTCTATGCCA-TATTTTGCTTA-AAATCAATGTTCATCCCTTGAAA-AAGA-AAA
1 AGAAAAGCTTTTCT-TTCCACTATTTT--TTATAAATCAAAGTTCGTCTCTT-AAATAAGACAAA
* * * * * * ** *
1317539 GGATTG-ATTCTCGTAATAGTCTCC-TGTCTTTT-GAGGATTGGGAACC-TAAAACCCATTC-CC
62 -CA-TGAATTCTCATACTAGTCTCCAT-TCTTTTCG-TGATTAGGCACCAT-AAACATATTCTTC
* * * * * * **
1317599 TTCATTAGGATACTTGACATTAATTCCTTGGTGTCACA
122 -TCATTAGGATACATGATATTGATGCTTTGGTTTCTTA
* ** * * *
1317637 AGAAAAGCTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAGTAAGACAAACAT
1 AGAAAAGCTTTTCTTTCCACTATTTTTTATA-AATCAAAGTTCGTCTCTTAAATAAGACAAACAT
* ** * ** * * *
1317702 GAATACAT-ATACTCTTCCCCATTCTTTTCACGATTAGGCACCATAAACTTAGTCCTT-TCGTTA
65 GAATTC-TCATACTAGTCTCCATTCTTTTCGTGATTAGGCACCATAAACATA-TTCTTCTCATTA
* *
1317765 GGATACATGATATTGGTGCTTTAGTTTCTTA
128 GGATACATGATATTGATGCTTTGGTTTCTTA
* * * * * ** * * * *
1317796 A-AAAAGGCTTTT-TTCCCACCAATTTTTGTGAAGTTTAAGTTCATGC-CTCAAATGAGCCAAAC
1 AGAAAA-GCTTTTCTTTCCACTATTTTTTAT-AAATCAAAGTTCGT-CTCTTAAATAAGACAAAC
* * * * * * ** * * * * * * * *
1317858 AAGGATACT-AGTAATAATGTTTATTCATGTCATCATTACGCA-CATTAAATACATTCTCCTCAT
63 ATGAATTCTCA-TACTAGTCTCCATTCTTTTCGTGATTAGGCACCA-TAAACATATTCTTCTCAT
* * * ** *
1317921 TAGGATAAATGATGTTGATGATTTTCTTTTGCGT-
126 TAGGATACATGATATTGATG-CTTTGGTTT-CTTA
* * * * *
1317955 -GAAAAGTTTTTCTATGCCA-TATTTTTCT-TAAAATCAAAGTTCATCCCTTAAA-AAGACAAGC
1 AGAAAAGCTTTTCT-TTCCACTATTTTT-TAT-AAATCAAAGTTCGTCTCTTAAATAAGACAAAC
* * * * * * * *
1318016 ATCG-ATTCT-AGAAATAGTCTCTATTCTATTCGGGATTGGGAACC-TAAAACACT-TTC-CCTT
63 AT-GAATTCTCA-TACTAGTCTCCATTCTTTTCGTGATTAGGCACCAT-AAACA-TATTCTTC-T
* *
1318076 CATTAGGATACATGACATTGACGCTTTGGTGTTGC--A
123 CATTAGGATACATGATATTGATGCTTTGGT-TT-CTTA
* * * * ** *
1318112 AGGAAAGCTTTTCTTTCCACCATTTTTGATAAGGTCAAAGTTTATCTTTTAAATAAGACAAACAT
1 AGAAAAGCTTTTCTTTCCACTATTTTTTATAA-ATCAAAGTTCGTCTCTTAAATAAGACAAACAT
** * * * * * * * *
1318177 GAATAATCATAGTAATCCCCATTCTATTAT-GT-ATTACGTACAACAAACATAGTCTTCTCATTA
65 GAATTCTCATACTAGTCTCCATTCT-TT-TCGTGATTAGGCACCATAAACATATTCTTCTCATTA
* ** * * **
1318240 GGATATACAATATTGATTCTTTGGTGTCACA
128 GGATACATGATATTGATGCTTTGGTTTCTTA
* * *
1318271 AGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAA-TT-GTCTCTTAAATAAGACAAACTT
1 AGAAAAGCTTTTCTTTCCACTATTTTTTATA-AATCAAAGTTCGTCTCTTAAATAAGACAAACAT
* * * ** * * * * * * *
1318334 GAATACACATGCTCTTCCCCATTCTTTTCATTATTAGCCGCCATAAACTTAGTT-ATCTCATTAG
65 GAATTCTCATACTAGTCTCCATTCTTTTCGTGATTAGGCACCATAAACATA-TTCTTCTCATTAG
* *
1318398 GATACATGATATTGGTGCTTTGGTTTCTGA
129 GATACATGATATTGATGCTTTGGTTTCTTA
* * * * * * * *
1318428 AGAAAAGCTTTT-TTCCCACTTATTTTTGTA-AAGTCTAAGTTCATGTCTCAAATGAGCCAAACA
1 AGAAAAGCTTTTCTTTCCAC-TATTTTT-TATAAATCAAAGTTCGTCTCTTAAATAAGACAAACA
* * ** * * * * * * * * *
1318491 AGGATTCTGGTATTAATCTTCATTCATTTT-GTCATTCGGCACTATAAGCACATTCTCCTCATTA
64 TGAATTCTCATACTAGTCTCCATTC-TTTTCGTGATTAGGCACCATAAACATATTCTTCTCATTA
* * * * *
1318555 GGATAAATGATGTTGATGATTT-TTTTTTTGCA
128 GGATACATGATATTGATGCTTTGGTTTCTT--A
* * * * * *
1318587 TGGAAATCTTTTCTTTGCC-CTATTTTCCTTA-AAATCAAAGTACATCCCTTAAATAAGACAAAC
1 AGAAAAGCTTTTCTTT-CCACTATTTT--TTATAAATCAAAGTTCGTCTCTTAAATAAGACAAAC
* * * * *
1318650 ATCAATTCTCATAATAGTCTCTATTCTTTTC-TAGATTAGG-AGCCAAAAACACATTC-TCTTCA
63 ATGAATTCTCATACTAGTCTCCATTCTTTTCGT-GATTAGGCA-CCATAAACATATTCTTC-TCA
* * *
1318712 TTGGGATACAAGACATTGATGCTTTGGTGTTGC--A
125 TTAGGATACATGATATTGATGCTTTGGT-TT-CTTA
* * ** * *
1318746 AGACAACCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGCCTCTTAAATAAGACAAACAT
1 AGAAAAGCTTTTCTTTCCACTATTTTTTATA-AATCAAAGTTCGTCTCTTAAATAAGACAAACAT
* * * ** * ** * * *
1318811 GAATACACAAACTCTTCCCCATTCTTTTCACGATTAGGCACCATAAACTTAGTCTTCTCTTTAGG
65 GAATTCTCATACTAGTCTCCATTCTTTTCGTGATTAGGCACCATAAACATATTCTTCTCATTAGG
* *
1318876 ATACACGATATTGGTGCTTTGGTTTCTTA
130 ATACATGATATTGATGCTTTGGTTTCTTA
* ** * * * * * * ** *
1318905 AGAAAGGCTTTT-TCCCCACCAATTTTTGTAAAGTCCAAGTTCATGC-CTCAAATGTGCCAAACA
1 AGAAAAGCTTTTCTTTCCACTATTTTTTATAAA-TCAAAGTTCGT-CTCTTAAATAAGACAAACA
* * * * * ** * * * *
1318968 AGGATTCT-AGTAATAATCTTCATTCATTTT-GAAATTACGTACTATAAACATATTCTCCTCATT
64 TGAATTCTCA-TACTAGTCTCCATTC-TTTTCGTGATTAGGCACCATAAACATATTCTTCTCATT
* * ** *
1319031 AGGATAAATGATATTGATGATTTTCTTTTGCGT-
127 AGGATACATGATATTGATG-CTTTGGTTT-CTTA
* ** * * *
1319064 -GACATTCTTTTCAATGCC-CTATTTTACTTTACTTAAAATCAAAGTTCATC-CTTTAAA-AAGA
1 AGAAAAGCTTTTC-TTTCCACTA-TTT--TTTA--T-AAATCAAAGTTCGTCTC-TTAAATAAGA
* * * ** * *
1319125 CAAGCATCAATTCT-AGTGA-TAATCTCCATTCTTTTCAAGATT-GGGAGCC-TAAAACACATTC
58 CAAACATGAATTCTCA-T-ACTAGTCTCCATTCTTTTCGTGATTAGGCA-CCAT-AAACATATT-
* * **
1319186 CTT-TCATTAGGATACATGACATTGATGCTTTGGTGTCACA
118 CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCTTA
* ** * * *
1319226 AGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACAT
1 AGAAAAGCTTTTCTTTCCACTATTTTTTATA-AATCAAAGTTCGTCTCTTAAATAAGACAAACAT
* * ** * * ** * * *
1319291 GAATACACATACTCTTCCCCATTCGTTTCACGATTAGGCACCATAAACTTAGTCTTTTCATTAGG
65 GAATTCTCATACTAGTCTCCATTCTTTTCGTGATTAGGCACCATAAACATATTCTTCTCATTAGG
*
1319356 ATACATGATATTGGTGCTTTGGTTTCTTA
130 ATACATGATATTGATGCTTTGGTTTCTTA
* * * * * * *
1319385 AGAAAGGCTTTT-TCT-CACCAATTTTTGTA-AAATCTAAGTTCATGC-CTTAAATGAGACAAGC
1 AGAAAAGCTTTTCTTTCCA-CTATTTTT-TATAAATCAAAGTTCGT-CTCTTAAATAAGACAAAC
* * * * * * * *
1319446 ATGGATTC-CAGTA-TTGATCTTCATTCATTTT-GTGATTAGGTACTATGAACATATTCTCCTCG
63 ATGAATTCTCA-TACTAG-TCTCCATTC-TTTTCGTGATTAGGCACCATAAACATATTCTTCTCA
* * * **
1319508 TTAGGATAAATGATATTGACGATTCTCTTTTGCTT-
125 TTAGGATACATGATATTGATGCTT-TGGTTT-CTTA
* * * * * *
1319543 -GGAAATCTTTTCTTCTCCCCTATTTTCCTTA-AAATCAAAGTTCATCCCTTAAATAAGAGAAAC
1 AGAAAAGCTTTTCTT-TCCACTATTTT--TTATAAATCAAAGTTCGTCTCTTAAATAAGACAAAC
* * * * * * * *
1319606 A-GAGATTCTCATAGTAGTCTCCAGTCTTTTC-TGGATTGGGAAGCAAAAACACATTC-CCTTCA
63 ATGA-ATTCTCATACTAGTCTCCATTCTTTTCGT-GATTAGGCACCATAAACATATTCTTC-TCA
* * * * * *
1319668 TTAGGATACAAGAGAGACATTGATGCTATGATATCGTA
125 TTAGGATAC---A-TGATATTGATGCTTTGGTTTCTTA
* *
1319706 AGAAAAGCTTTTCTTTCCA-TCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
1 AGAAAAGCTTTTCTTTCCACT-ATTTTTTATA-AATCAAAGTTCGTCTCTTAAATAAGACAAACA
* * * ** * * * *
1319770 TGAATACACATGCTCTTCCCCATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAG
64 TGAATTCTCATACTAGTCTCCATTCTTTTCGTGATTAGGCACCATAAACATATTCTTCTCATTAG
* *
1319835 GATACACGATATTGGTGCTTTGGTTTCTTA
129 GATACATGATATTGATGCTTTGGTTTCTTA
* ** * * * ** ** *
1319865 AGAAAGGCTTTT-TCCCCACCAATTTTTTTTAAAGTCCAAGTTTATGC-CACAAATGAG-CTAAA
1 AGAAAAGCTTTTCTTTCCA-CTATTTTTTATAAA-TCAAAGTTCGT-CTCTTAAATAAGAC-AAA
* * * * * ** * *
1319927 CA-AAGATTCT-AGTAATAATCTTCAATCATTTT-GTGATTACACACTATAAACATATTCTCCTC
62 CATGA-ATTCTCA-TACTAGTCTCCATTC-TTTTCGTGATTAGGCACCATAAACATATTCTTCTC
* * * *
1319989 CTTAGGATAAATAATATTGATGATTT--TCTT-TTA
124 ATTAGGATACATGATATTGATGCTTTGGT-TTCTTA
* * * * * * *
1320022 GGTGAAAATCTTTTCAATGCC-TTATTTTACTTA-AAATCAAAGTTCATCCCTTAAA-AAGACAA
1 --AGAAAAGCTTTTC-TTTCCACTATTTT--TTATAAATCAAAGTTCGTCTCTTAAATAAGACAA
* ** * * * * * *
1320084 GCACCAATTCT-AGTAAC-AATCTCCATTCTTTTTAG-GATTGGGAACC-TAAAACACATTC-CC
61 ACATGAATTCTCA-T-ACTAGTCTCCATTC-TTTTCGTGATTAGGCACCAT-AAACATATTCTTC
* * * **
1320144 TTCGTTAGGATACATGACATTGATGCTTTGGTGTCGCA
122 -TCATTAGGATACATGATATTGATGCTTTGGTTTCTTA
* * * * *
1320182 AGAAAAGCTTTTTTTTCTACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
1 AGAAAAGCTTTTCTTTCCACTATTTTTTATA-AATCAAAGTTCGTCTCTTAAATAAGACAAACAT
* * ** * * * * *
1320247 GAATACACATACTCTTCCCCAATCTTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGG
65 GAATTCTCATACTAGTCTCCATTCTTTTCGTGATTAGGCACCATAAACATATTCTTCTCATTAGG
* * *
1320312 ATACACGACATTGGTGCTTTGGTTTCTTA
130 ATACATGATATTGATGCTTTGGTTTCTTA
* * * * * ** * * * *
1320341 AGAAAGGATTTT-TTCCCACCAATTTTTGCAAAGTCTAAGTTCGTGC-CTCAAATTAGCCAAACA
1 AGAAAAGCTTTTCTTTCCACTATTTTTTATAAA-TCAAAGTTCGT-CTCTTAAATAAGACAAACA
* * * * * * * * * * * *
1320404 AGGATT-TTAGAAATAATCTTCATTCATTTCGTTATTATGCACTATAAACATATTCTCCTCATTA
64 TGAATTCTCA-TACTAGTCTCCATTCTTTTCGTGATTAGGCACCATAAACATATTCTTCTCATTA
* * *
1320468 GGATAAATGATATTGATGATTT--TATCTTGCA
128 GGATACATGATATTGATGCTTTGGTTTCTT--A
* * * *
1320499 TAG-AAATCTTTTCTTTGCC-CTATTTTCCTT-TAAATCAAAGTTCATCCCTCAAATAAGACAAA
1 -AGAAAAGCTTTTCTTT-CCACTATTTT--TTATAAATCAAAGTTCGTCTCTTAAATAAGACAAA
* * * * * *
1320561 CATCG-ATTCTCATAATAGTCTCCATTCTTTTCAG-GATTTGGAACCAAAAACAAATTC-CCTTC
62 CAT-GAATTCTCATACTAGTCTCCATTCTTTTC-GTGATTAGGCACCATAAACATATTCTTC-TC
* * ** * ** *
1320623 ATTCGAATAGTTAACGTTGATGCTTTGG-TGCTGCT-
124 ATTAGGATACATGATATTGATGCTTTGGTTTCT--TA
* * *
1320658 AGAAAAGCTTTTCTTTCCACCT-TTTTTGATAAAGTCAAAGTTCATCTCTTAAATAAGACAAGCA
1 AGAAAAGCTTTTCTTTCCA-CTATTTTTTATAAA-TCAAAGTTCGTCTCTTAAATAAGACAAACA
* * * * * * * *
1320722 TGAATACTCAAACTATTCCCCATTCTTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAC
64 TGAATTCTCATACTAGTCTCCATTCTTTTCGTGATTAGGCACCATAAACATATTCTTCTCATTAG
*
1320787 GATACATGATATTGGTGCTTTGGTTTCTTA
129 GATACATGATATTGATGCTTTGGTTTCTTA
* * * * * *
1320817 AGAAAGGC-TTT-TTTCTCACCAATTTTTGCA-AAATCTAAGTTCGTGC-CTCAAATGAGACAAA
1 AGAAAAGCTTTTCTTTC-CA-CTATTTTT-TATAAATCAAAGTTCGT-CTCTTAAATAAGACAAA
* * * ** * *
1320878 CAT-AGATTCT-AGTATTGAAAT-T-CATTCATTTT-GTGATTAGGCACAACGAACACATTCTCC
62 CATGA-ATTCTCA-TACT--AGTCTCCATTC-TTTTCGTGATTAGGCACCATAAACATATTCTTC
* * * ** *
1320938 TCCTTAGGATAAATGATATTGATGATTTTCTTT-TGCA
122 TCATTAGGATACATGATATTGATGCTTTGGTTTCT-TA
* * * * * * *
1320975 TGGAAATCATTTCTTTGCC-CTATTTTCCTTA-AAATCAAAGTTCATCCCTTAAATAAGACAAGC
1 AGAAAAGCTTTTCTTT-CCACTATTTT--TTATAAATCAAAGTTCGTCTCTTAAATAAGACAAAC
* * * * * *
1321038 ATCG-ATTCACAAAATAGTCTCCATTCTTTTCAG-GATTAGGAACCAAAAACACATTCCTT-TCA
63 AT-GAATTCTCATACTAGTCTCCATTCTTTTC-GTGATTAGGCACCATAAACATATT-CTTCTCA
* * * * **
1321100 TTAAGATACACGACATTGATGCTTTGGTGTCACA
125 TTAGGATACATGATATTGATGCTTTGGTTTCTTA
* * *
1321134 AGAAAAGCTTTTCTTTCCA-TCGTTTTTTATAGAGTCAAAGTT--TGTC--AAATAAGACAAACA
1 AGAAAAGCTTTTCTTTCCACT-ATTTTTTATA-AATCAAAGTTCGTCTCTTAAATAAGACAAACA
* * * * * * *
1321194 TGAATACTCATAGTAATCTGCATTCTTTT-ATGGATTAGGTACCATAAACATAGTCTTCTCATTA
64 TGAATTCTCATACTAGTCTCCATTCTTTTCGT-GATTAGGCACCATAAACATATTCTTCTCATTA
* * * * **
1321258 GGATAGACGATATTAAAGCTTTGGTTTCACA
128 GGATACATGATATTGATGCTTTGGTTTCTTA
** * * * * * * * * * *
1321289 AGAATGGCTTTTTCCCTACCA-AATTTTGTA-AAGTCTAAGTTTGGGC-CTCAAATGAGACAAAC
1 AGAAAAGC-TTTT-CTTTCCACTATTTTTTATAAATCAAAG-TTCGTCTCTTAAATAAGACAAAC
* * * * * * * *
1321351 ATGGATTCT-AGTAAT-GATCTTCATTCATTTT-GTG---AGGCACTATAAGCACATTCTCCTTA
63 ATGAATTCTCA-TACTAG-TCTCCATTC-TTTTCGTGATTAGGCACCATAAACATATTCTTCTCA
* * ** *
1321410 TTAGGATAAATGATACTGATAATTT--TTT-TGCA
125 TTAGGATACATGATATTGATGCTTTGGTTTCT-TA
* * * * ** *
1321442 TGGAAATCTTTTCTTTGCC-CTATGATCTTTA-AAATCAAAGTTTATCCCTTAAATAAGACAAGA
1 AGAAAAGCTTTTCTTT-CCACTAT--TTTTTATAAATCAAAGTTCGTCTCTTAAATAAGACAA-A
* * * ** * * * * *
1321505 -ATCAATTCTCGTAATAGTC-CCTATTCTTTTCAAGATTGGGAACCAAAAACACATTC-CCTTCA
62 CATGAATTCTCATACTAGTCTCC-ATTCTTTTCGTGATTAGGCACCATAAACATATTCTTC-TCA
* * * * * **
1321567 TTAGGATACACGATATTTATCCCTTGGTGTCGCA
125 TTAGGATACATGATATTGATGCTTTGGTTTCTTA
* * * * **
1321601 AGAAAAGCTTTTCTTTTCA-TCCTTTTTGATAGAATCAAAGTTTGTCGT-TTAAATAAGAC--GT
1 AGAAAAGCTTTTCTTTCCACT-ATTTTTTATA-AATCAAAGTTCGTC-TCTTAAATAAGACAAAC
* ** * * * * *
1321662 ATAAATAGTCATACTTA-TCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTTATA
63 ATGAATTCTCATAC-TAGTCTCCATTCTTTTCGTGATTAGGCACCATAAACATATTCTTCTCATT
* * * *
1321726 AGGATGCACGATATTGATGCTTTGGTTTTGTTT
127 AGGATACATGATATTGATGCTTTGG-TTTCTTA
* * * * * * * *
1321759 A-AAAGGC-TTTC-TTCTCACCAATTTTTGTAAAGTCTAAGTCCGTGC-CTCAAATGAG-CTAAA
1 AGAAAAGCTTTTCTTTC-CACTATTTTTTATAAA-TCAAAGTTCGT-CTCTTAAATAAGAC-AAA
** * * * * ** * * *
1321819 CATGGCTTCTCGTA-TTGATCTTCATTCATTTT-TTGATTAGGCACTGTAAACACATTCTCCTCT
62 CATGAATTCTCATACTAG-TCTCCATTC-TTTTCGTGATTAGGCACCATAAACATATTCTTCTCA
* * * *
1321882 TTAGGATAAATGATATTG-TTCATTTTGTTT-TGCA
125 TTAGGATACATGATATTGATGC-TTTGGTTTCT-TA
* * * * * * * * * *
1321916 TGGAAATCTTTT-TTATGC-CTTTTTTTTCTTAAAATTAAAGTTCGTCCCTTAAATAAGATAAGC
1 AGAAAAGCTTTTCTT-TCCACTATTTTTT-AT-AAATCAAAGTTCGTCTCTTAAATAAGACAAAC
* ** *
1321979 ATCG-ATTCTCATAAC-AGTCTCCATTCTTCTCAG-GATTAGAAACC-TAAAACACATTCCCTTC
63 AT-GAATTCTCAT-ACTAGTCTCCATTCTTTTC-GTGATTAGGCACCAT-AAACATATT--CTTC
* * * *
1322040 T--TTAGGATACATGACATTGATGCTTTGGAGTT-ATG
122 TCATTAGGATACATGATATTGATGCTTTGG-TTTCTTA
** * * * * ** * * * *
1322075 AGAAAAGCTTTTCTTTCCACCGTTTATGATAGAGTCAAACTTTATCTCTTAAAAAAGTCAAGCAC
1 AGAAAAGCTTTTCTTTCCACTATTTTTTATA-AATCAAAGTTCGTCTCTTAAATAAGACAAACAT
* * * * * * * ** *
1322140 GAATGCTCATAGTAATC-CCTTTTCTTTT-ATGGGTTAGGTACCATAAATGTAGTCTTCTCATTA
65 GAATTCTCATACTAGTCTCC-ATTCTTTTCGT-GATTAGGCACCATAAACATATTCTTCTCATTA
* **
1322203 GGATACACGATATTGATGCTTTGGTTTCGCA
128 GGATACATGATATTGATGCTTTGGTTTCTTA
* * * * * * * * *
1322234 AGAAAGGCTTTTCCCTACCA--ATTTTTGTA-AAGTCTAAGCTCATGC-CTCAAATGAGACAAAC
1 AGAAAAGCTTTT-CTTTCCACTATTTTT-TATAAATCAAAGTTCGT-CTCTTAAATAAGACAAAC
** * * * * * *
1322295 ATGGTTTCT-AGTA-TTGATCTTCATTCATGTT-GTGATTAGGCACTATAAGCATATTCTCCTCA
63 ATGAATTCTCA-TACTAG-TCTCCATTC-TTTTCGTGATTAGGCACCATAAACATATTCTTCTCA
* * * ** *
1322357 -TAGGATAAATGATAATGATGATTTTCTTT-TGCA
125 TTAGGATACATGATATTGATGCTTTGGTTTCT-TA
* ** * ** * * *
1322390 AGGAATTCCTTTCTTTGCC-CTATTTTCCTTA-AAATCAAAGTTTATCCCCTAAATAAGACAAGC
1 AGAAAAGCTTTTCTTT-CCACTATTTT--TTATAAATCAAAGTTCGTCTCTTAAATAAGACAAAC
** * * *
1322453 ATCG-ATTCTCATAAC-AGTCTCCATTCTTTTCACGATTAGGAACC-TAAAACACATTCCT-TCA
63 AT-GAATTCTCAT-ACTAGTCTCCATTCTTTTCGTGATTAGGCACCAT-AAACATATTCTTCTCA
* * *
1322514 TTAGGATACTTGACATTGATGCTTTGGTGTT-GTA
125 TTAGGATACATGATATTGATGCTTTGGT-TTCTTA
** * * * *
1322548 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAGTAAAAGTTTTGTCTCTTAAATAAGACAAACA
1 AGAAAAGCTTTTCTTTCCACTATTTTTTATA-AATCAAAG-TTCGTCTCTTAAATAAGACAAACA
* * * * * * *
1322613 TGAATACTCATAGTAATCCCCATTCTTTT-ATGGATTAGGTACCATAAACATAGTCTTCTCATTA
64 TGAATTCTCATACTAGTCTCCATTCTTTTCGT-GATTAGGCACCATAAACATATTCTTCTCATTA
* **
1322677 GGATACACGATATTGATGCTTTGGTTTCACA
128 GGATACATGATATTGATGCTTTGGTTTCTTA
* * ** * * * * *
1322708 AGAAAGGCTTTT-TTTCCCTACCAAATTTTGTAAAGTCTAAGTTCTTGC-CTCAAATGAGACAAA
1 AGAAAAGCTTTTCTTT-CC-ACTATTTTTTATAAA-TCAAAGTTCGT-CTCTTAAATAAGACAAA
* * * * * * * *
1322771 CAT-AGGTTCT-AGTAAT-GATCTTCATTCATTTT-GTGTTTAGGCACTATAAGCACATTCTCCT
62 CATGA-ATTCTCA-TACTAG-TCTCCATTC-TTTTCGTGATTAGGCACCATAAACATATTCTTCT
* * * * ** ** *
1322832 TAGTAGGATAAATAATATTGATAATTTTTTTTTGCGT-
123 CATTAGGATACATGATATTGAT-GCTTTGGTTT-CTTA
* * * * * * * * *
1322869 GGAAATA-TTTTTCGTGCC-CT-TTTTTTCTTAAAATTAAAGTTCATCCCTTAAATAAGACAAGC
1 AGAAA-AGCTTTTCTTTCCACTATTTTTT-AT-AAATCAAAGTTCGTCTCTTAAATAAGACAAAC
* * * *
1322931 ATTG-ATTCTCATAATAGTCTCCATTCTTTTTAG-GATTAGGAACC-TCAAACACATTCCCTTC-
63 A-TGAATTCTCATACTAGTCTCCATTC-TTTTCGTGATTAGGCACCAT-AAACATATT--CTTCT
* * *
1322992 C-TTAGGATACATGACATTGATGCTTTCGTGTT-ATA
123 CATTAGGATACATGATATTGATGCTTTGGT-TTCTTA
** * * * *
1323027 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAGTCAACA-TTTGTCTCTTAAATATGACAAACA
1 AGAAAAGCTTTTCTTTCCACTATTTTTTATA-AATCAA-AGTTCGTCTCTTAAATAAGACAAACA
* * * * * ** *
1323091 TGAATACTCATAGTAATC-CCCTTTTTTTTATAGATTCA-GTACCATAAACATAGTT-TTCTCAT
64 TGAATTCTCATACTAGTCTCCATTCTTTTCGT-GATT-AGGCACCATAAACATA-TTCTTCTCAT
* * * *
1323153 TACGATGCACGATATTGATGCTTTAGTTTC
126 TAGGATACATGATATTGATGCTTTGGTTTC
1323183 GCAAGAAAGG
Statistics
Matches: 4989, Mismatches: 1499, Indels: 969
0.67 0.20 0.13
Matches are distributed among these distances:
151 2 0.00
152 8 0.00
153 16 0.00
154 52 0.01
155 138 0.03
156 110 0.02
157 491 0.10
158 1435 0.29
159 2003 0.40
160 433 0.09
161 67 0.01
162 29 0.01
163 159 0.03
164 43 0.01
165 3 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (158 bp):
AGAAAAGCTTTTCTTTCCACTATTTTTTATAAATCAAAGTTCGTCTCTTAAATAAGACAAACATG
AATTCTCATACTAGTCTCCATTCTTTTCGTGATTAGGCACCATAAACATATTCTTCTCATTAGGA
TACATGATATTGATGCTTTGGTTTCTTA
Found at i:1318013 original size:951 final size:948
Alignment explanation
Indices: 1316002--1318282 Score: 3094
Period size: 951 Copynumber: 2.4 Consensus size: 948
1315992 AGGCACTGTG
* * *
1316002 AACACATTCTCCTTATTGGGATAAATGATATT-AGTGATTTTCTTTTACGTAGAAAACTTTTCTT
1 AACACATTCTCCTCATTAGGATAAATGATATTGA-TGATTTTCTTTTGCGTAGAAAACTTTTCTT
* * * * *
1316066 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAGGCTTTGACTCTCATAATGG
65 TG-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGACTCTCGTAATGG
* *
1316131 TCTCCATTCTATTCAGGATTGGGGACCAAAAACACATTCTCTTCATTTGGATACTTGACATTGAT
129 TCTCCATTCTATTCAGGATTGGGAACCAAAAACACATTCTCTTCATTAGGATACTTGACATTGAT
* * ** * **
1316196 GCTTTGGTGCTGTTAGAAAAGCTTTTCATTCCACTGTTTTTTATAGAATCAAAGTTTGTCTCTTA
194 GCTTTGGTGCTGCTAG-AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG-TTCACTCTTA
* *
1316261 AATAAGACAAACATGAATACTCATACTAGTCCCCATTCTTTTCGTGATTAAGCACCATAAACTTA
257 AATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTTA
*
1316326 GTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCTACCAA
322 GTCTTCACATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCTACCAA
* * * *
1316391 TTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCATAGAAGGATTCTAGTATTAATCTTCATT
387 TTTTTGTAAAGTCTAAGTTCATGCCTCAAATAAGCCAAACAAGCATTCTAGTATTAATCTTCATT
* ** * * *
1316456 TATTTTGTGATTCGGTGCTATAAACACATTCTCCTCAATAGGATAACTTATATTGATGATTTTCT
452 TATTTTGTGATTAGGCACTATAAACACATTCTCCCCAATAGGATAAATAATATTGATGATTTTCT
* *
1316521 TTTGCGTGAAAATCTTTTCTATGCCCTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGAC
517 TTTGCGTGAAAATCTTTTCTATGCCATATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGAA
1316586 AAGGATGATTCTCGTAACAGTCTCCATTCTTTTCAGGATTAGGAACCGAAAACACATTCCCTTCA
582 AAGGATGATTCTCGTAACAGTCTCCATTCTTTTCAGGATTAGGAACCGAAAACACATTCCCTTCA
* * *
1316651 TTAGGGTACTTGACATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
647 TTAGGATACTTGACATTAATACCTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
1316716 GAATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAATACATATACTCTTCCCCATTCTTTTCAC
712 GAATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAATACATATACTCTTCCCCATTCTTTTCAC
*
1316781 AATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTATGGATTCTTAAG
777 AATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTATAGATTCTTAAG
* ** *
1316846 AAAAGCTTTTTTCTCACCAATTTTTGTAAATTCTAAGTTGGTGCCTCAAATGAGACAAACATGGA
842 AAAAGCTTTTTTCCCACCAATTTTTGTAAATTCTAAGTTCATGCCTCAAATGAGACAAACAAGGA
* ** * * * ** * * *
1316911 TTCCAATGTTGATCTTTATTCTTTTTGTGATTAGGCACTATG
907 TACCAATAATAATCTTTATTCATGTCATCATTACGCACTATA
* * * *
1316953 AACACATCCTTCTCATTAGGATAAATGATATTGATGATTTTATTTTGCGTGGAAAACTTTTCTTT
1 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTAGAAAACTTTTCTTT
*
1317018 GTCCTATTTTTCTTAAAATCAATGTTCATCCCTTAAATAAGACAAGCATCGACTCTCGTAATGGT
66 G-CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGACTCTCGTAATGGT
*
1317083 CTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCTCTTCATTAGGATACTTGACATTGATG
130 CTCCATTCTATTCAGGATTGGGAACCAAAAACACATTCTCTTCATTAGGATACTTGACATTGATG
** *
1317148 CTTTGGTGCTGCTAGAAATGCCCTTCTTTCCACCATTTTTGATAGAATCAAAGTTCCACTCTCAA
195 CTTTGGTGCTGCTAGAAA-GCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT-CACTCTTAA
* * * *
1317213 ATAAAACAAACATGAATACTCATACTATTCACCATTCTTTTCATGATTAGGCACCATAAACTTAG
258 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTTAG
* * *
1317278 TCTTCACCTTAGGATACATGATATTGGTGTTTTGGTTTCTTAAGAAAGGCTTTTTTCTCT-CCAA
323 TCTTCACATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTC-CTACCAA
* * *
1317342 TTTTTTTAAAGTCTAAGTTCGTGCCTCAAATAAGCCAAACAAGCATTCTAGTATTTATCTTC-TT
387 TTTTTGTAAAGTCTAAGTTCATGCCTCAAATAAGCCAAACAAGCATTCTAGTATTAATCTTCATT
* * *
1317406 TCATTTTGTGGTTATGCACTATAAACACATTCTCCCCATTAGGATAAATAATATTGATGATTTTC
452 T-ATTTTGTGATTAGGCACTATAAACACATTCTCCCCAATAGGATAAATAATATTGATGATTTTC
*
1317471 TTTTGCGTGAAAATCTTTTCTATGCCATATTTTGCTTAAAATCAATGTTCATCCCTTGAAA-AAG
516 TTTTGCGTGAAAATCTTTTCTATGCCATATTTTCCTTAAAATCAATGTTCATCCCTT-AAATAAG
* * * * *
1317535 AAAAGGATTGATTCTCGTAATAGTCTCC-TGTCTTTTGAGGATTGGGAACCTAAAACCCATTCCC
580 AAAAGGA-TGATTCTCGTAACAGTCTCCAT-TCTTTTCAGGATTAGGAACCGAAAACACATTCCC
* * *
1317599 TTCATTAGGATACTTGACATTAATTCCTTGGTGTCACAAGAAAAGCTTTTTTTTCCACCGTTTTT
643 TTCATTAGGATACTTGACATTAATACCTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTT
* *
1317664 GATAGAATCAAAGTTTGTCTCTTAAGTAAGACAAACATGAATACATATACTCTTCCCCATTCTTT
708 GATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACATGAATACATATACTCTTCCCCATTCTTT
* * * * *
1317729 TCACGATTAGGCACCATAAACTTAGTCCTT-TCGTTAGGATACATGATATTGGTGCTTTAGTTTC
773 TCACAATTAGGCACCATAAACTTAGT-CTTCTCATTAGGATACACGATATTGGTGCTATAGATTC
* *
1317793 TTAA-AAAAGGCTTTTTTCCCACCAATTTTTGTGAAGTT-TAAGTTCATGCCTCAAATGAGCCAA
837 TTAAGAAAA-GCTTTTTTCCCACCAATTTTTGT-AAATTCTAAGTTCATGCCTCAAATGAGACAA
* * *
1317856 ACAAGGATACTAGTAATAATGTTTATTCATGTCATCATTACGCAC-ATTA
900 ACAAGGATACCAATAATAATCTTTATTCATGTCATCATTACGCACTA-TA
* * * *
1317905 AATACATTCTCCTCATTAGGATAAATGATGTTGATGATTTTCTTTTGCGT-GAAAAGTTTTTCTA
1 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTAGAAAA-CTTTTCTT
* * * *
1317969 TGCCATATTTTTCTTAAAATCAAAGTTCATCCCTTAAA-AAGACAAGCATCGATTCTAGAAATAG
65 TGCC-TATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGACTCTCGTAATGG
* * * * * * *
1318033 TCTCTATTCTATTCGGGATTGGGAACCTAAAACACTTTCCCTTCATTAGGATACATGACATTGAC
129 TCTCCATTCTATTCAGGATTGGGAACCAAAAACACATTCTCTTCATTAGGATACTTGACATTGAT
* * * * *
1318098 GCTTTGGTGTTGCAAGGAAAGCTTTTCTTTCCACCATTTTTGATA-AGGTCAAAGTTTATCTTTT
194 GCTTTGGTGCTGCTA-GAAAGCTTTTCTTTCCACCATTTTTGATAGA-ATCAAAGTTCA-CTCTT
* * * * * * * *
1318162 AAATAAGACAAACATGAATAATCATAGTAATCCCCATTCTATT-ATGTATTACGTACAACAAACA
256 AAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCATG-ATTAAGCACCATAAACT
* * * * * * ** *
1318226 TAGTCTTCTCATTAGGATATACAATATTGATTCTTTGGTGTCACAAGAAAAGCTTTT
320 TAGTCTTCACATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTT
1318283 CTTTCCACTG
Statistics
Matches: 1167, Mismatches: 145, Indels: 36
0.87 0.11 0.03
Matches are distributed among these distances:
950 13 0.01
951 747 0.64
952 400 0.34
953 7 0.01
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (948 bp):
AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTAGAAAACTTTTCTTT
GCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGACTCTCGTAATGGTC
TCCATTCTATTCAGGATTGGGAACCAAAAACACATTCTCTTCATTAGGATACTTGACATTGATGC
TTTGGTGCTGCTAGAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTCACTCTTAAATA
AGACAAACATGAATACTCATACTAATCCCCATTCTTTTCATGATTAAGCACCATAAACTTAGTCT
TCACATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCTACCAATTTT
TGTAAAGTCTAAGTTCATGCCTCAAATAAGCCAAACAAGCATTCTAGTATTAATCTTCATTTATT
TTGTGATTAGGCACTATAAACACATTCTCCCCAATAGGATAAATAATATTGATGATTTTCTTTTG
CGTGAAAATCTTTTCTATGCCATATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGAAAAGG
ATGATTCTCGTAACAGTCTCCATTCTTTTCAGGATTAGGAACCGAAAACACATTCCCTTCATTAG
GATACTTGACATTAATACCTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
CAAAGTTTGTCTCTTAAATAAGAAAAACATGAATACATATACTCTTCCCCATTCTTTTCACAATT
AGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTATAGATTCTTAAGAAAA
GCTTTTTTCCCACCAATTTTTGTAAATTCTAAGTTCATGCCTCAAATGAGACAAACAAGGATACC
AATAATAATCTTTATTCATGTCATCATTACGCACTATA
Found at i:1320289 original size:476 final size:476
Alignment explanation
Indices: 1318251--1323294 Score: 6033
Period size: 476 Copynumber: 10.6 Consensus size: 476
1318241 GATATACAAT
* * *
1318251 ATTGATTCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAA--TTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * * * * *
1318314 CTCTTAAATAAGACAAACTTGAATACACATGCTCTTCCCCATTCTTTTCATTATTAGCCGCCATA
66 CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCACCATA
* * * *
1318379 AACTTAGT-TATCTCATTAGGATACATGATATTGGTGCTTTGGTTTCTGAAGAAAAGCTTTTTTC
131 AACTTAGTCT-TCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTCC
** * * * * *
1318443 CCACTTATTTTTGTAAAGTCTAAGTTCATGTCTCAAATGAGCCAAACAAGGATTCTGGTATTAAT
195 CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTATTGAT
* * * *
1318508 CTTCATTCATTTTGTCATTCGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATGTTGATG
260 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* *
1318573 ATTTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTACATCCCTTA
325 A-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
* * *
1318638 AATAAGACAAACATCAATTCTCATAATAGTCTCTATTCTTTTCTA-GATTAGGAGCCAAAAACAC
389 AATAAGACAAGCATCAATTCTCATAATAGTCTCCATTCTTTTC-AGGATTAGGAACCAAAAACAC
* * *
1318702 ATTCTCTTCATTGGGATACAAGAC
453 ATTCCCTTCATTAGGATACATGAC
* * * * *
1318726 ATTGATGCTTTGGTGTTGCAAGACAACCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGC
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * *
1318791 CTCTTAAATAAGACAAACATGAATACACAAACTCTTCCCCATTCTTTTCACGATTAGGCACCATA
66 CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCACCATA
*
1318856 AACTTAGTCTTCTCTTTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTCCC
131 AACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTCCC
* * * * * *
1318921 CACCAATTTTTGTAAAGTCCAAGTTCATGCCTCAAATGTGCCAAACAAGGATTCTAGTAATAATC
196 CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTATTGATC
** * * *
1318986 TTCATTCATTTTGAAATTACGTACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGA
261 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * **
1319051 TTTTCTTTTGCGT-GACATTCTTTTCAATGCCCTATTTTACTTTACTTAAAATCAAAGTTCATCC
326 TTTTCTTTTGCATGGA-AATCTTTTCTTTGCCCTATTTT-C----CTTAAAATCAAAGTTCATCC
* * * * * * *
1319115 TTTAAA-AAGACAAGCATCAATTCT-AGTGATAATCTCCATTCTTTTCAAGATTGGGAGCCTAAA
385 CTTAAATAAGACAAGCATCAATTCTCA-TAATAGTCTCCATTCTTTTCAGGATTAGGAACCAAAA
*
1319178 ACACATTCCTTTCATTAGGATACATGAC
449 ACACATTCCCTTCATTAGGATACATGAC
* *
1319206 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * * *
1319271 CACTTAAATAAGACAAACATGAATACACATACTCTTCCCCATTCGTTTCACGATTAGGCACCATA
66 CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCACCATA
* * *
1319336 AACTTAGTCTTTTCATTAGGATACATGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTT-CT
131 AACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTCCC
* * * *
1319400 CACCAATTTTTGTAAAATCTAAGTTCATGCCTTAAATGAGACAAGCATGGATTCCAGTATTGATC
196 CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTATTGATC
* * * * *
1319465 TTCATTCATTTTGTGATTAGGTACTATGAACATATTCTCCTCGTTAGGATAAATGATATTGACGA
261 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * *
1319530 TTCTCTTTTGCTTGGAAATCTTTTCTTCTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
326 TTTTCTTTTGCATGGAAATCTTTTCTT-TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
* * * * * * * *
1319595 ATAAGAGAAACA-GAGATTCTCATAGTAGTCTCCAGTCTTTTCTGGATTGGGAAGCAAAAACACA
390 ATAAGACAAGCATCA-ATTCTCATAATAGTCTCCATTCTTTTCAGGATTAGGAACCAAAAACACA
*
1319659 TTCCCTTCATTAGGATACAAGAGAGAC
454 TTCCCTTCATTAGGATAC---A-TGAC
* * * * * *
1319686 ATTGATGCTATGATATCGTAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * *
1319751 CTCTTAAATAAGACAAACATGAATACACATGCTCTTCCCCATTCTTTTCATGATTAGGCACCATA
66 CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCACCATA
1319816 AACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTCCC
131 AACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTCCC
* * * * ** * *
1319881 CACCAATTTTTTTTAAAGTCCAAGTTTATGCCACAAATGAG-CTAAACAAAGATTCTAGTAATAA
196 CACCAA-TTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGAC-AAACATGGATTCTAGTATTGA
* ** * * *
1319945 TCTTCAATCATTTTGTGATTACACACTATAAACATATTCTCCTCCTTAGGATAAATAATATTGAT
259 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * ** * *
1320010 GATTTTCTTTTAG-GTGAAAATCTTTTCAATGCCTTATTTTACTTAAAATCAAAGTTCATCCCTT
324 GATTTTCTTTT-GCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
* * * * * *
1320074 AAA-AAGACAAGCACCAATTCT-AGTAACAATCTCCATTCTTTTTAGGATTGGGAACCTAAAACA
388 AAATAAGACAAGCATCAATTCTCA-TAATAGTCTCCATTCTTTTCAGGATTAGGAACCAAAAACA
*
1320137 CATTCCCTTCGTTAGGATACATGAC
452 CATTCCCTTCATTAGGATACATGAC
* * *
1320162 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCTACCATTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * *
1320227 CTCTTAAATAAGACAAACATGAATACACATACTCTTCCCCAATCTTTTCATGATTAGGCACCATA
66 CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCACCATA
* * *
1320292 AACTTAGTCTTCTCATTAGGATACACGACATTGGTGCTTTGGTTTCTTAAGAAAGGATTTTTTCC
131 AACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTCCC
* * * * * * * * *
1320357 CACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAATTAGCCAAACAAGGATTTTAGAAATAATC
196 CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTATTGATC
* * * *
1320422 TTCATTCATTTCGTTATTATGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGA
261 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * * * *
1320487 TTTTATCTTGCATAGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATCCCTCAAA
326 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * * *
1320552 TAAGACAAACATCGATTCTCATAATAGTCTCCATTCTTTTCAGGATTTGGAACCAAAAACAAATT
391 TAAGACAAGCATCAATTCTCATAATAGTCTCCATTCTTTTCAGGATTAGGAACCAAAAACACATT
* * ** *
1320617 CCCTTCATTCGAATAGTTAAC
456 CCCTTCATTAGGATACATGAC
* * * *
1320638 GTTGATGCTTTGGTG-CTGCTAGAAAAGCTTTTCTTTCCACCTTTTTTGATA-AAGTCAAAGTTC
1 ATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAA-TCAAAGTTT
* * *
1320701 ATCTCTTAAATAAGACAAGCATGAATACTCAAACTATTCCCCATTCTTTTCATGATTAGGCACCA
64 GTCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCACCA
* * *
1320766 TAAACTTAGTCTTCTCATTACGATACATGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTT
129 TAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTC
* * * * *
1320831 CTCACCAATTTTTGCAAAATCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTATTGA
194 CCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTATTGA
** * ** *
1320896 AATTCATTCATTTTGTGATTAGGCACAACGAACACATTCTCCTCCTTAGGATAAATGATATTGAT
259 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
*
1320961 GATTTTCTTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
324 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
* * *
1321026 AATAAGACAAGCATCGATTCACAAAATAGTCTCCATTCTTTTCAGGATTAGGAACCAAAAACACA
389 AATAAGACAAGCATCAATTCTCATAATAGTCTCCATTCTTTTCAGGATTAGGAACCAAAAACACA
* * *
1321091 TTCCTTTCATTAAGATACACGAC
454 TTCCCTTCATTAGGATACATGAC
* * * *
1321114 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCGTTTTTTATAGAGTCAAAGTTTG-
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * ** *
1321178 -TC--AAATAAGACAAACATGAATACTCATAGTAATCTGCATTCTTTT-ATGGATTAGGTACCAT
66 CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAT-GATTAGGCACCAT
* * *** ** *
1321239 AAACATAGTCTTCTCATTAGGATAGACGATATTAAAGCTTTGGTTTCACAAGAATGGCTTTTTCC
130 AAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTCC
* * *** *
1321304 CTACCAAATTTTGTAAAGTCTAAGTTTGGGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
195 CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTATTGAT
* * *
1321369 CTTCATTCATTTTGTG---AGGCACTATAAGCACATTCTCCTTATTAGGATAAATGATACTGAT-
260 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* ** * *
1321430 AATTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATGATCTTTAAAATCAAAGTTTATCCCTTAA
325 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
* * * *
1321494 ATAAGACAAGAATCAATTCTCGTAATAGTC-CCTATTCTTTTCAAGATTGGGAACCAAAAACACA
390 ATAAGACAAGCATCAATTCTCATAATAGTCTCC-ATTCTTTTCAGGATTAGGAACCAAAAACACA
* *
1321558 TTCCCTTCATTAGGATACACGAT
454 TTCCCTTCATTAGGATACATGAC
* * * *
1321581 ATTTATCCCTTGGTGTCGCAAGAAAAGCTTTTCTTTTCATCC-TTTTTGATAGAATCAAAGTTTG
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-CCGTTTTTGATAGAATCAAAGTTTG
** * * **
1321645 TCGT-TTAAATAAGAC--GTATAAATAGTCATACT-TATCCCCATTCTTTTCGGGATTAGGCACC
65 TC-TCTTAAATAAGACAAACATGAATACTCATACTAT-TCCCCATTCTTTTCATGATTAGGCACC
* * * * * * *
1321706 ATAAACATAGTCTTCTTATAAGGATGCACGATATTGATGCTTTGGTTTTGTTTA-AAAGGCTTTC
128 ATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGG-TTTCTTAAGAAAGGCTTT-
* * * * *
1321770 TT-CTCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAATGAG-CTAAACATGGCTTCTCGTA
191 TTCCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGAC-AAACATGGATTCTAGTA
* * *
1321833 TTGATCTTCATTCATTTTTTGATTAGGCACTGTAAACACATTCTCCTCTTTAGGATAAATGATAT
255 TTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
* * * * * * * *
1321898 TGTTCATTTTGTTTTGCATGGAAATCTTTT-TTATGCCTTTTTTTTCTTAAAATTAAAGTTCGTC
320 TGATGATTTTCTTTTGCATGGAAATCTTTTCTT-TGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * * * *
1321962 CCTTAAATAAGATAAGCATCGATTCTCATAACAGTCTCCATTCTTCTCAGGATTAGAAACCTAAA
384 CCTTAAATAAGACAAGCATCAATTCTCATAATAGTCTCCATTCTTTTCAGGATTAGGAACCAAAA
*
1322027 ACACATTCCCTTCTTTAGGATACATGAC
449 ACACATTCCCTTCATTAGGATACATGAC
* **** * * * *
1322055 ATTGATGCTTTGGAGTTATGAGAAAAGCTTTTCTTTCCACCGTTTATGATAGAGTCAAACTTTAT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * * * * * ** * *
1322120 CTCTTAAAAAAGTCAAGCACGAATGCTCATAGTAATCCCTTTTCTTTT-ATGGGTTAGGTACCAT
66 CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAT-GATTAGGCACCAT
* **
1322184 AAA-TGTAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTC
130 AAACT-TAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTC
* * *
1322247 CCTACCAATTTTTGTAAAGTCTAAGCTCATGCCTCAAATGAGACAAACATGGTTTCTAGTATTGA
194 CCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTATTGA
* * * *
1322312 TCTTCATTCATGTTGTGATTAGGCACTATAAGCATATTCTCCTCA-TAGGATAAATGATAATGAT
259 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * * * *
1322376 GATTTTCTTTTGCAAGGAATTCCTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCCTA
324 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
* * * *
1322441 AATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCACGATTAGGAACCTAAAACACA
389 AATAAGACAAGCATCAATTCTCATAATAGTCTCCATTCTTTTCAGGATTAGGAACCAAAAACACA
*
1322506 TT-CCTTCATTAGGATACTTGAC
454 TTCCCTTCATTAGGATACATGAC
* * * *
1322528 ATTGATGCTTTGGTGTTGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAGTAAAAGTTTTG
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG-TTTG
* * *
1322593 TCTCTTAAATAAGACAAACATGAATACTCATAGTAATCCCCATTCTTTT-ATGGATTAGGTACCA
65 TCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAT-GATTAGGCACCA
* * **
1322657 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTT
129 TAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGC--TTTT
* * * *
1322722 TCCCTACCAAATTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATAGG-TTCTAGTAA
192 TCCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT-GGATTCTAGTAT
* * * * *
1322786 TGATCTTCATTCATTTTGTGTTTAGGCACTATAAGCACATTCTCCTTAGTAGGATAAATAATATT
256 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
* * * * * * * *
1322851 GATAATTTTTTTTTGCGTGGAAATATTTT-TCGTGCCCTTTTTTTCTTAAAATTAAAGTTCATCC
321 GATGATTTTCTTTTGCATGGAAATCTTTTCT-TTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
** * **
1322915 CTTAAATAAGACAAGCATTGATTCTCATAATAGTCTCCATTCTTTTTAGGATTAGGAACCTCAAA
385 CTTAAATAAGACAAGCATCAATTCTCATAATAGTCTCCATTCTTTTCAGGATTAGGAACCAAAAA
*
1322980 CACATTCCCTTCCTTAGGATACATGAC
450 CACATTCCCTTCATTAGGATACATGAC
* *** *
1323007 ATTGATGCTTTCGTGTTATAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAGTCAACA-TTTG
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA-AGTTTG
* * * * * *
1323071 TCTCTTAAATATGACAAACATGAATACTCATAGTAATCCCC-TTTTTTTTATAGATTCA-GTACC
65 TCTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCAT-GATT-AGGCACC
* * * * * * **
1323134 ATAAACATAGTTTTCTCATTACGATGCACGATATTGATGCTTTAGTTTCGCAAGAAAGG-TTTTT
128 ATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTT
* ** *
1323198 CCCTACCAATTTTTGTAAAGTCTAAGCCCATGCCTCAAATGAGACAAACATGGTTTCTAGTATTG
193 CCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTATTG
*
1323263 ATCTTCACTCATTTTGTGATTAGGCACTATAA
258 ATCTTCATTCATTTTGTGATTAGGCACTATAA
1323295 TGATGAGAAC
Statistics
Matches: 3958, Mismatches: 533, Indels: 156
0.85 0.11 0.03
Matches are distributed among these distances:
466 2 0.00
467 182 0.05
468 6 0.00
469 188 0.05
470 7 0.00
471 11 0.00
472 212 0.05
473 81 0.02
474 429 0.11
475 438 0.11
476 899 0.23
477 350 0.09
478 241 0.06
479 213 0.05
480 508 0.13
481 68 0.02
482 122 0.03
483 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (476 bp):
ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
CTCTTAAATAAGACAAACATGAATACTCATACTATTCCCCATTCTTTTCATGATTAGGCACCATA
AACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTCCC
CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTATTGATC
TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
TAAGACAAGCATCAATTCTCATAATAGTCTCCATTCTTTTCAGGATTAGGAACCAAAAACACATT
CCCTTCATTAGGATACATGAC
Found at i:1324950 original size:9 final size:9
Alignment explanation
Indices: 1324936--1324996 Score: 50
Period size: 9 Copynumber: 6.1 Consensus size: 9
1324926 GGATGATATG
1324936 AGGAGAGAT
1 AGGAGAGAT
1324945 AGGAGAGAT
1 AGGAGAGAT
*
1324954 AGTAGAGAT
1 AGGAGAGAT
*
1324963 AGAAGGGATGAT
1 AG--GAGA-GAT
1324975 AGAAGAGGAGAT
1 AG--GA-GAGAT
1324987 AGGAGAGAT
1 AGGAGAGAT
1324996 A
1 A
1324997 ATAGAGAGAG
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
9 25 0.57
10 2 0.05
11 2 0.05
12 13 0.30
13 2 0.05
ACGTcount: A:0.46, C:0.00, G:0.41, T:0.13
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:1324971 original size:42 final size:41
Alignment explanation
Indices: 1324919--1325024 Score: 149
Period size: 42 Copynumber: 2.5 Consensus size: 41
1324909 GAAAAGAAAA
*
1324919 ATAGGAGGGATGATATGAGGAGAGATAGGAGAGATAGTAGAG
1 ATAGGAGGGATGATA-GAGGAGAGATAGGAGAGATAATAGAG
* *
1324961 ATAGAAGGGATGATAGAAGAGGAGATAGGAGAGATAATAGAG
1 ATAGGAGGGATGATAGAGGA-GAGATAGGAGAGATAATAGAG
*
1325003 AGAGGAGGGATGATAGGAGGAG
1 ATAGGAGGGATGATA-GAGGAG
1325025 GAGAGAAGAA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
41 4 0.07
42 48 0.86
43 4 0.07
ACGTcount: A:0.42, C:0.00, G:0.43, T:0.14
Consensus pattern (41 bp):
ATAGGAGGGATGATAGAGGAGAGATAGGAGAGATAATAGAG
Found at i:1325000 original size:24 final size:25
Alignment explanation
Indices: 1324958--1325009 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
1324948 AGAGATAGTA
* *
1324958 GAGATAGAAGGGATGATAGA-AGAG
1 GAGATAGAAGAGATAATAGAGAGAG
*
1324982 GAGATAGGAGAGATAATAGAGAGAG
1 GAGATAGAAGAGATAATAGAGAGAG
1325007 GAG
1 GAG
1325010 GGATGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.46, C:0.00, G:0.42, T:0.12
Consensus pattern (25 bp):
GAGATAGAAGAGATAATAGAGAGAG
Found at i:1325008 original size:18 final size:18
Alignment explanation
Indices: 1324982--1325030 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
1324972 GATAGAAGAG
*
1324982 GAGATAGGAGAGATAATA
1 GAGAGAGGAGAGATAATA
* *
1325000 GAGAGAGGAGGGATGATA
1 GAGAGAGGAGAGATAATA
1325018 G-GAGGAGGAGAGA
1 GAGA-GAGGAGAGA
1325031 AGAAGATGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 2 0.08
18 24 0.92
ACGTcount: A:0.43, C:0.00, G:0.47, T:0.10
Consensus pattern (18 bp):
GAGAGAGGAGAGATAATA
Found at i:1325017 original size:21 final size:21
Alignment explanation
Indices: 1324921--1325017 Score: 53
Period size: 21 Copynumber: 4.6 Consensus size: 21
1324911 AAAGAAAAAT
1324921 AGGAGGGATGAT-AT-GAGGAG
1 AGGAGGGATGATAATAGA-GAG
* * *
1324941 AGATAGGAGA-GATAGTAGAGAT
1 AG-GAGG-GATGATAATAGAGAG
*
1324963 AGAAGGGATGATAGA-AGAG-G
1 AGGAGGGATGATA-ATAGAGAG
*
1324983 AGATAGGAGA-GATAATAGAGAG
1 AG-GAGG-GATGATAATAGAGAG
1325005 AGGAGGGATGATA
1 AGGAGGGATGATA
1325018 GGAGGAGGAG
Statistics
Matches: 58, Mismatches: 8, Indels: 21
0.67 0.09 0.24
Matches are distributed among these distances:
20 9 0.16
21 35 0.60
22 12 0.21
23 2 0.03
ACGTcount: A:0.43, C:0.00, G:0.42, T:0.14
Consensus pattern (21 bp):
AGGAGGGATGATAATAGAGAG
Found at i:1331401 original size:158 final size:157
Alignment explanation
Indices: 1331165--1333801 Score: 840
Period size: 159 Copynumber: 16.6 Consensus size: 157
1331155 AAGTTTGTCT
* * * * * * * *
1331165 CTTAAATAAGACAAACATGAATACTCA-TAGTAATC-CCTATTCTTTTATGGATTAAGAACCATA
1 CTTAAATAAGACAAACATGGATTCT-AGTAATGATCTCC-ATTCTTTTGT-GATTAGGCACTATA
* * * * *
1331228 AACATAGTCTT-CTCATTAGGATACATGATATTAATGCTTTGGTTTCGTAAGAAAGGCTTTTTCC
63 AACACA-TTTTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTCC
*
1331292 CTACCAGTTTTTGTAAAATCTAAGTTCATGC
127 CTACCAGTTTTTGTAAAATCAAAGTTCATGC
* * *
1331323 CTTAAATTAGACAAACATGGATTCTAGTAATGATCTTCACTCATTTTGTGATTAGGCACTATAAA
1 CTTAAATAAGACAAACATGGATTCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTATAAA
* * ** * * **
1331388 CACATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC--GTATAAATC-TTTTCTA
65 CACATTTTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAG-A-AAAGCTTTTTCCC
* ** * *
1331450 TGCCTTA-TTTTACCTAAAATCAAGGTTCA-CC
128 TACC--AGTTTT-TGTAAAATCAAAGTTCATGC
* * * * ** * *
1331481 CTTTAAATAAGACAAGCATCGATTCTCGTAA-CAGTCTCCATTCTTTTCAGCATTGGGAACCTA-
1 C-TTAAATAAGACAAACATGGATTCTAGTAATGA-TCTCCATTCTTTTGTG-ATTAGGCA-CTAT
* * * * * *
1331544 AAACACA-TTCCCTTCATTAGGATACATGACATTCATGATTTGGTGTCACAAGAAAAGC-TTTT-
62 AAACACATTTTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTC
* ** *
1331606 CTTTTCATCGTTTTTGATAGAATCAAAGTT--TGC
126 CCTACCA--GTTTTTG-TAAAATCAAAGTTCATGC
** *
1331639 CTTTTAAATAAGACAAACAT--A-AATAGTCACACTAATCTCCATTCTTTTCAG-GATTAGGCAC
1 C--TTAAATAAGACAAACATGGATTCTAGT-A-A-TGATCTCCATTCTTTT--GTGATTAGGCAC
* ** * * * * * * ** *
1331700 CATAAACGTAGTCTT-CTCATAAGGATGCATGATAATGATGGTTTGGTTTTGCTGGAAAGGCTTT
59 TATAAACACA-TTTTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTT
* * * * **
1331764 CTTCTC-ACCAATTTTTGTAAAGTCTAAGTTTGTGC
123 -TTCCCTACCAGTTTTTGTAAAATCAAAGTTCATGC
* ** * * * * * * *
1331799 CTTAAATGAGTTAAACATGGATTCTACTATTGATCTTCATTCAATTTT-TGAGTAGACACTGTGA
1 CTTAAATAAGACAAACATGGATTCTAGTAATGATCTCCATTC--TTTTGTGATTAGGCACTATAA
* * * ** * * * *
1331863 ACACATTCTCCTCATTAGGATATATGATATTGATGATTTTCTTTTGCATGGAAATCGTTTATTTG
64 ACACATTTTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCA-AGAAA-AGCTT-TTT-
*
1331928 CCCT---A-TTTTCCT-TAAAATCAAAGTTCATCC
125 CCCTACCAGTTTT--TGTAAAATCAAAGTTCATGC
* * * * *** * * * *
1331958 CTTAAA-AAGACAAGCATCGATTCTCGTAAT-AGTCTCCATTCTGATCAAGATTGGGAACCAAAA
1 CTTAAATAAGACAAACATGGATTCTAGTAATGA-TCTCCATTCT-TTTGTGATTAGGCACTATAA
* * * * ** * * *
1332021 ATACA-TTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGCCACTAGAAAAGCTTTTCTTT
64 ACACATTTTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTT-TTC
* *
1332085 CC-ACC-GTTTTTGATAGAATCAAAGTTCGT-C
126 CCTACCAGTTTTTG-TAAAATCAAAGTTCATGC
* * * * * * * *
1332115 TCTTAAAGAAGACAAACATGAATACTTA-TACT-AGTCCCCATTCTTTTCATAATTAGGCACCAT
1 -CTTAAATAAGACAAACATGGATTC-TAGTAATGA-TCTCCATTCTTTT-GTGATTAGGCACTAT
* * * **
1332178 -AA-AC-TTTGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGGTTCTTAAGAAAAGCTTTT
62 AAACACATTT-TC--CTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTT
* * * *
1332240 TTCCC-ACCAATTTTT-TAAAAGTCTATGTTCGTGC
123 TTCCCTACCAGTTTTTGTAAAA-TCAAAGTTCATGC
* * * * * *
1332274 CTCATATAAGACAAACATGGATTCTAGTGATGATCTTCATTTATTTTGTGATTAGGCACTATAAG
1 CTTAAATAAGACAAACATGGATTCTAGTAATGATCTCCA-TTCTTTTGTGATTAGGCACTATAAA
* * ** ** * * * * **
1332339 CACATTCTCCTCATTAGGATAAATGATATTGATAATTTTATTTTTGCATGTAAATC-TTTTCTTT
65 CACATTTTCCTCATTAGGATACATGATATTGAT-GCTTTGGTTTCGCAAGAAAAGCTTTTTCCCT
* *
1332403 GCCCTA-TTTTCCT-TAAAATCAAAGTTCATCC
129 -ACC-AGTTTT--TGTAAAATCAAAGTTCATGC
* * * * * ** * * * *
1332434 CTTAAATAAGACAAGA-ATCGATTCTCGAAAAT-AGTCCCCACTCTTTTCAAGATTGGGAACCAA
1 CTTAAATAAGACAA-ACATGGATTCTAG-TAATGA-TCTCCATTCTTTT-GTGATTAGGCACTAT
* * * *
1332497 AAACACA-TTCCCTTCATTAGGATACACGACATTTATGCTTTGGTGTT-GCAAGAAAAGC-TTTT
62 AAACACATTTTCC-TCATTAGGATACATGATATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTTT
* ** *
1332559 -CTTTTCATCGTTTTTTGATAGAATCAAAGTT--TGC
125 CCCTACCA--G-TTTTTG-TAAAATCAAAGTTCATGC
* ** * * * * *
1332593 CTCTAAAACAAGACAAACATAAATAGTC-A-TACTAATCCCCATTCTTTTCGGGATTAGGCACCA
1 CT-T-AAATAAGACAAACATGGAT--TCTAGTAATGATCTCCATTCTTTT-GTGATTAGGCACTA
** * * *
1332656 TAAACGTAGTCTT-CTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTT
61 TAAACACA-TTTTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTT
* * * *
1332719 CCCTACCAATTTTTGTAAAGTCTAAGCTCATGC
125 CCCTACCAGTTTTTGTAAAATCAAAGTTCATGC
* * * * *
1332752 CTCAAATGAGACAAACATGGTTTCTAGTATTGATCTTCATTCATTTTTGTGATTAGGCACTATAA
1 CTTAAATAAGACAAACATGGATTCTAGTAATGATCTCCATTC--TTTTGTGATTAGGCACTATAA
* * * * * ** * * ** *
1332817 GCACATTCTCTTCA-TAGGATAAATGATATTGATGATTTTCTTTTGCAAGGAATTC-TTTTCTCT
64 ACACATTTTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTCCCT
*
1332880 ACCCTA-TATTCCT-TAAAATCAAAGTTCAT-C
129 A-CC-AGT-TT-TTGTAAAATCAAAGTTCATGC
* * *
1332910 ACTTAAATAAGACAAGCATCGATTCTCA-T-A-GCAGTCTCCATTCTTTTCCG-GATTAGGAACC
1 -CTTAAATAAGACAAACATGGATTCT-AGTAATG-A-TCTCCATTCTTTT--GTGATTAGGCA-C
* * * * *
1332971 TA-AAACA-AATTCCCTTCATTAGGATACATGACATTGGTACTTTGGTGTT-GCAAGAAAAGCTT
59 TATAAACACATTTTCC-TCATTAGGATACATGATATTGATGCTTTGGT-TTCGCAAGAAAAGCTT
*** * * * **
1333033 TTTTTTTCCGCTGTTTTTGATAGAGCCAAAGTT--TGTC
122 TTTCCCTAC-CAGTTTTTG-TAAAATCAAAGTTCATG-C
* * * * * * * * *
1333070 TCTTAAATAAGGCAAACATGAATACTCA-TAGTAATCCCCATTCTTTTATGGATTAGGAACCATA
1 -CTTAAATAAGACAAACATGGATTCT-AGTAATGATCTCCATTCTTTTGT-GATTAGGCACTATA
* * * * * *
1333134 AATATAGTCTT-CTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCC
63 AACACA-TTTTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTCC
* * * **
1333198 CTACCAATTTTTGTAAAGTCTAAGTTTGTGC
127 CTACCAGTTTTTGTAAAATCAAAGTTCATGC
* * * * *
1333229 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCTCTATAAG
1 CTTAAATAAGACAAACATGGATTCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTATAAA
* * ** * * * * * ** *
1333294 CACATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGTATGGAAATCTTTTT-TTTG
65 CACATTTTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTCCCTA
* * *
1333358 CCCGATTTTCCT-TAAAATCAAACTTTAT-C
130 CCAG-TTTT--TGTAAAATCAAAGTTCATGC
* ** ** * ** * * *
1333387 CATTAAATAATACATGCATCAATTCTCA-TAA-CAGTC-CCTATTCTTTTCAAGATTGGGAACCA
1 C-TTAAATAAGACAAACATGGATTCT-AGTAATGA-TCTCC-ATTCTTTT-GTGATTAGGCACTA
* * * * * * * ** *
1333449 AAAACACA-TTCCCTTCTTTAGGATACTTAACATTGATGCTTTGGTGTCATAAGAAAAACTTTTC
61 TAAACACATTTTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTT-
* *
1333513 TTTCC-ACC-GTTTTTG-ACAGAGTCAAAGTT--TGTC
123 TTCCCTACCAGTTTTTGTA-A-AATCAAAGTTCATG-C
* * * * * * * * *
1333546 TCTTAAATAAGACAAACATGAATACTCA-TAGTAATCCCCTTTCTTTATG-GATTAGGAACCATT
1 -CTTAAATAAGACAAACATGGATTCT-AGTAATGATCTCCATTCTTT-TGTGATTAGGCACTATA
* * * * * * *
1333609 AACATAGTCTT-CTCATTAGGATACACGATATTAATGCTTTAGTTTCACAAGAAAGGC-TTTTCC
63 AACACA-TTTTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTCC
* * * * ** *
1333672 TTACCAATTTTTGTAAAGTCTAAGTTTGTGT
127 CTACCAGTTTTTGTAAAATCAAAGTTCATGC
* * * *
1333703 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAG
1 CTTAAATAAGACAAACATGGATTCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTATAAA
* * *
1333768 CACATTTTTCTCATTAGGATAAACGATATTGATG
65 CACATTTTCCTCATTAGGATACATGATATTGATG
1333802 ATTTTCTTTT
Statistics
Matches: 1791, Mismatches: 508, Indels: 361
0.67 0.19 0.14
Matches are distributed among these distances:
155 6 0.00
156 62 0.03
157 189 0.11
158 562 0.31
159 571 0.32
160 291 0.16
161 106 0.06
162 2 0.00
163 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (157 bp):
CTTAAATAAGACAAACATGGATTCTAGTAATGATCTCCATTCTTTTGTGATTAGGCACTATAAAC
ACATTTTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTCCCTAC
CAGTTTTTGTAAAATCAAAGTTCATGC
Found at i:1333125 original size:476 final size:478
Alignment explanation
Indices: 1330160--1334117 Score: 4859
Period size: 476 Copynumber: 8.3 Consensus size: 478
1330150 AAAACCTTTC
* * *
1330160 TTTT-CACCCTTTTTGATAGAGTCAAAGTTTGTCTCTTAAAAAAGACAAACATGAATAATCATAG
1 TTTTCCACCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAG
* * * * *
1330224 TAATCGCCATTCTTTTATGGACTTAGGTACCATAAACATGGTCTTCTCATTAAGATACACAATAT
66 TAATCCCCATTCTTTTATGGA-TTAGGAACCATAAACATAGTCTTCTCATTAGGATACACGATAT
* * * *
1330289 TGATGCTTTGGTTTCGTAAGAAAGGTTTTTTCCTTACCAATTTTTGTAAAGTCTAAGTTCATGCC
130 TGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCTACCAATTTTTGTAAAGTCTAAGTTCGTGCC
* *
1330354 TCAAATGAGACAAACATGGATTCTAGTAATGATTTTCATTCATTTTGTGATTAGGCACTAGAAGC
195 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGC
* * * * * *
1330419 ACATTCTCCTTAATAGGATAAATGATACTGATGTTTTTTTTTTTGCATGGAAAACTTTTCTTTGC
260 ACATTCTCCTCATTAGGATAAATGATATTGATG-ATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * * *
1330484 CCGATTTTCCTTAAAATCAAAGTTCAT-CCATTAAATGAGACATGCATCAATTCTCATAACAGTA
324 CCTATTTTCCTTAAAATCAAAGTTCATCCCATTAAATAAGACAAGCATCGATTCTCATAACAGT-
*
1330548 C-CCATGCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAC-TAGACATTGAT
388 CTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT-GACATTGAT
** * * *
1330611 GCTTTGGTGTCACTAGAAAATCTTTTC
452 GCTTTGGTGTTGCAAGAAAAGCTTTTT
* * ** ** * * *
1330638 TTTT-CACCGTTTTTTAGAGAAACAAAGTTCATCTCTTGAATAAGACAAATATGAATACTCATAC
1 TTTTCCACCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAG
* * * * * *
1330702 TATTCTCCATTCTTTTCA-CGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACATGATAT
66 TAATCCCCATTCTTTT-ATGGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACACGATAT
* * **
1330766 TGGTGCTTTGGTTTCCCAAGAAAGGCTTTTTCCC-ACCAATTTTTGTAAAGTCTAAGTTCGCACC
130 TGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCTACCAATTTTTGTAAAGTCTAAGTTCGTGCC
* * * * * * *
1330830 TCAAATGAGCCAAACAAGGATTCTA-TCATTGATCTTCATTCATTTTGTGATTACGTAATATAAA
195 TCAAATGAGACAAACATGGATTCTAGT-AATGATCTTCATTCATTTTGTGATTAGGCACTATAAG
* * * * * *
1330894 CATATTCTCCTCATTAGGATAAATGATATTGATGGTTTTTTTTTTGCGTGAAAATCTTTTCTATG
259 CACATTCTCCTCATTAGGATAAATGATATTGAT-GATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * *
1330959 CCCTATTTTACTTAAAATCAAAATTCATCCC-TTAAATAAGACAAGCATCGATTCTCGTAACAGT
323 CCCTATTTTCCTTAAAATCAAAGTTCATCCCATTAAATAAGACAAGCATCGATTCTCATAACAGT
* * * *
1331023 CTCCATTCTTTTCAGGATTGGGAACCTAAAACAAATTCCCTTCATTCA-GATACATGAAATTGAT
388 CTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATT-AGGATACATGACATTGA-
** *
1331087 GCTTTGGCGCCGTTGATACTTTGGTGTTGCTGGAAAAGCTTTTC
451 -------------TG---CTTTGGTGTTGCAAGAAAAGCTTTTT
1331131 TTTT-CACCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAG
1 TTTTCCACCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAG
* * *
1331195 TAATCCCTATTCTTTTATGGATTAAGAACCATAAACATAGTCTTCTCATTAGGATACATGATATT
66 TAATCCCCATTCTTTTATGGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACACGATATT
* * * * *
1331260 AATGCTTTGGTTTCGTAAGAAAGGCTTTTTCCCTACCAGTTTTTGTAAAATCTAAGTTCATGCCT
131 GATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCTACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
* * * *
1331325 TAAATTAGACAAACATGGATTCTAGTAATGATCTTCACTCATTTTGTGATTAGGCACTATAAACA
196 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCA
* * ** * *
1331390 CATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTATAAATCTTTTCTATGCCT
261 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * *
1331455 TATTTTACC-TAAAATCAAGGTTCA-CCCTTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
326 TATTTT-CCTTAAAATCAAAGTTCATCCCATTAAATAAGACAAGCATCGATTCTCATAACAGTCT
* * *
1331518 CCATTCTTTTC-AGCATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTCATGA
390 CCATTCTTTTCAAG-ATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
** *
1331582 TTTGGTGTCACAAGAAAAGCTTTTC
454 TTTGGTGTTGCAAGAAAAGCTTTTT
* * * * * * * *
1331607 TTTT-CATCGTTTTTGATAGAATCAAAGTTTGCCTTTTAAATAAGACAAACATAAATAGTCACAC
1 TTTTCCACCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAG
* * * * * * *
1331671 TAATCTCCATTCTTTTCA-GGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAA
66 TAATCCCCATTCTTTT-ATGGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACACGATAT
* * ** * *
1331735 TGATGGTTTGGTTTTGCTGGAAAGGCTTTCTTCTC-ACCAATTTTTGTAAAGTCTAAGTTTGTGC
130 TGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTCCCTACCAATTTTTGTAAAGTCTAAGTTCGTGC
* ** * * * * *
1331799 CTTAAATGAGTTAAACATGGATTCTACTATTGATCTTCATTCAATTTT-TGAGTAGACACTGTGA
194 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC-ATTTTGTGATTAGGCACTAT-A
* * *
1331863 A-CACATTCTCCTCATTAGGATATATGATATTGATGATTTTCTTTTGCATGGAAATCGTTTATTT
257 AGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* *
1331927 GCCCTATTTTCCTTAAAATCAAAGTTCATCCC-TTAAA-AAGACAAGCATCGATTCTCGTAATAG
322 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCATTAAATAAGACAAGCATCGATTCTCATAACAG
** * *
1331990 TCTCCATTCTGATCAAGATTGGGAACCAAAAATACATTCCCTTCATTAGGATACTTGACATTGAT
387 TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
*** *
1332055 GCTTTGGTGCCACTAGAAAAGC-TTTT
452 GCTTTGGTGTTGCAAGAAAAGCTTTTT
* * * * * *
1332081 CTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTTAAAGAAGACAAACATGAATACTTATAC
1 TTTTCCACCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAG
* * * * *
1332146 TAGTCCCCATTCTTTTCAT-AATTAGGCACCATAAACTTTGTCTTCTCATTAGGATACACGATAT
66 TAATCCCCATTCTTTT-ATGGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACACGATAT
* * ** * *
1332210 TGGTGCTTTGGGTTCTTAAGAAAAGCTTTTTTCCC-ACCAATTTTT-TAAAAGTCTATGTTCGTG
130 TGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTCCCTACCAATTTTTGT-AAAGTCTAAGTTCGTG
* * * *
1332273 CCTCATATAAGACAAACATGGATTCTAGTGATGATCTTCATTTATTTTGTGATTAGGCACTATAA
193 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * *
1332338 GCACATTCTCCTCATTAGGATAAATGATATTGATAATTTTATTTTTGCATGTAAATCTTTTCTTT
258 GCACATTCTCCTCATTAGGATAAATGATATTGATGATTTT-CTTTTGCATGGAAATCTTTTCTTT
* * *
1332403 GCCCTATTTTCCTTAAAATCAAAGTTCATCCC-TTAAATAAGACAAGAATCGATTCTCGAAAATA
322 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCATTAAATAAGACAAGCATCGATTCTC-ATAACA
* * * *
1332467 GTCCCCACTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTTA
386 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
*
1332532 TGCTTTGGTGTTGCAAGAAAAGCTTTTC
451 TGCTTTGGTGTTGCAAGAAAAGCTTTTT
* * * * * * *
1332560 TTTT-CATCGTTTTTTGATAGAATCAAAGTTTGCCTCTAAAACAAGACAAACATAAATAGTCATA
1 TTTTCCACCG-TTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATA
* ** * *
1332624 CTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGATACACGATAT
65 GTAATCCCCATTCTTTTATGGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACACGATAT
* *
1332689 TGATGCTTTGGTTTCGCAAGAAAGGC-TTTTCCCTACCAATTTTTGTAAAGTCTAAGCTCATGCC
130 TGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCTACCAATTTTTGTAAAGTCTAAGTTCGTGCC
* *
1332753 TCAAATGAGACAAACATGGTTTCTAGTATTGATCTTCATTCATTTTTGTGATTAGGCACTATAAG
195 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA-TTTTGTGATTAGGCACTATAAG
* * * * *
1332818 CACATTCTCTTCA-TAGGATAAATGATATTGATGATTTTCTTTTGCAAGGAATTCTTTTCTCTAC
259 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * *
1332882 CCTATATTCCTTAAAATCAAAGTTCATCAC-TTAAATAAGACAAGCATCGATTCTCATAGCAGTC
324 CCTATTTTCCTTAAAATCAAAGTTCATCCCATTAAATAAGACAAGCATCGATTCTCATAACAGTC
** * * * * *
1332946 TCCATTCTTTTCCGGATTAGGAACCTAAAACAAATTCCCTTCATTAGGATACATGACATTGGTAC
389 TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
1333011 TTTGGTGTTGCAAGAAAAGCTTTTT
454 TTTGGTGTTGCAAGAAAAGCTTTTT
* * * *
1333036 TTTTCCGCTGTTTTTGATAGAGCCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATAG
1 TTTTCCACCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAG
*
1333101 TAATCCCCATTCTTTTATGGATTAGGAACCATAAATATAGTCTTCTCATTAGGATACACGATATT
66 TAATCCCCATTCTTTTATGGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACACGATATT
* *
1333166 GATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCCTACCAATTTTTGTAAAGTCTAAGTTTGTGCCT
131 GATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCTACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
*
1333231 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCTCTATAAGCA
196 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCA
* * *
1333296 CATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGTATGGAAATCTTTTTTTTGCCC
261 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * * * *
1333361 GATTTTCCTTAAAATCAAACTTTAT-CCATTAAATAATACATGCATCAATTCTCATAACAGTC-C
326 TATTTTCCTTAAAATCAAAGTTCATCCCATTAAATAAGACAAGCATCGATTCTCATAACAGTCTC
* * *
1333424 CTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATACTTAACATTGATGCT
391 C-ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
*** *
1333489 TTGGTGTCATAAGAAAAAC-TTTT
455 TTGGTGTTGCAAGAAAAGCTTTTT
* *
1333512 CTTTCCACCGTTTTTGACAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAG
1 TTTTCCACCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAG
* *
1333577 TAATCCCCTTTC-TTTATGGATTAGGAACCATTAACATAGTCTTCTCATTAGGATACACGATATT
66 TAATCCCCATTCTTTTATGGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACACGATATT
* * * * * *
1333641 AATGCTTTAGTTTCACAAGAAAGGC-TTTTCCTTACCAATTTTTGTAAAGTCTAAGTTTGTGTCT
131 GATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCTACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
1333705 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCA
196 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCA
* * * * * * *
1333770 CATTTTTCTCATTAGGATAAACGATATTGATGATTTTCTTTTGTATTGAAATCTTTTCCTTGCTC
261 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * * * *
1333835 GATTTTCCTTCAAATCAAAGTTCAT-CCATTAAACAAGACATGCATCAATTCTCATAACAGTCCC
326 TATTTTCCTTAAAATCAAAGTTCATCCCATTAAATAAGACAAGCATCGATTCTCATAACAGTCTC
* * * * *
1333899 CATTTTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAAGATACTTGACATTAATGCTT
391 CATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* *
1333964 TAGT-TTCGTAAGAAAAGC-TTTT
456 TGGTGTT-GCAAGAAAAGCTTTTT
* * *
1333986 CTTTCCACCGTTTTTGATAGAGTCAAAGTTT-TCTCTTAAATAAGACAAACATGAATACTTATGG
1 TTTTCCACCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAG
* * *
1334050 TAAGT-GCCATTCTTTTATGGATTA-GATACCATAAACATGGTCTTCTCGTTAGGATACAC-AGT
66 TAA-TCCCCATTCTTTTATGGATTAGGA-ACCATAAACATAGTCTTCTCATTAGGATACACGA-T
1334112 ATTGAT
128 ATTGAT
1334118 TCTAGTAATG
Statistics
Matches: 3023, Mismatches: 393, Indels: 132
0.85 0.11 0.04
Matches are distributed among these distances:
473 43 0.01
474 382 0.13
475 409 0.14
476 939 0.31
477 426 0.14
478 237 0.08
479 170 0.06
490 2 0.00
492 6 0.00
493 298 0.10
494 110 0.04
495 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (478 bp):
TTTTCCACCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAG
TAATCCCCATTCTTTTATGGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACACGATATT
GATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCTACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCA
CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
TATTTTCCTTAAAATCAAAGTTCATCCCATTAAATAAGACAAGCATCGATTCTCATAACAGTCTC
CATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
TGGTGTTGCAAGAAAAGCTTTTT
Found at i:1334929 original size:867 final size:865
Alignment explanation
Indices: 1333248--1334954 Score: 2313
Period size: 867 Copynumber: 2.0 Consensus size: 865
1333238 GACAAACATG
* * * *
1333248 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCTCTATAAGCACATTTTCCTCATTAGGA
1 GATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAGCACATTCTCCTCAATAGGA
* * ** *
1333313 TAAATGATATTGATGATTTTCTTTTGTATGGAAATCTTTTTTTTGCCCGATTTTCCTTAAAATCA
66 TAAATGATATTGATGATTTTCTTTTGCATGGAAAACTTTGCTTTGCCCAATTTTCCTTAAAATCA
* * * * *
1333378 AACTTTATCCATTAAATAATACATGCATCAATTCTCATAACAGTCCCTATTCTTTTCAAGATTGG
131 AACTTCATCCATTAAATAAGACAAGCATCAATTCTCATAACAGACCCTATTCTTTTCAAGATTAG
*
1333443 GAACCAAAAACACATTCCCTTCTTTAGGATACTTAACATTGATGCTTTGGTGTCATAAGAAAAAC
196 GAACCAAAAACACATTCCCTTCTTTAGGATACTTAACATTGACGC-TTGGTGTCAT-AGAAAAAC
*
1333508 TTTTCTTTCCACCGTTTTTGACAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
259 TTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
* * * *
1333573 ATAGTAATCCCCTTTCTTTATGGATTAGGAACCATTAACATAGTCTTCTCATTAGGATACACGAT
324 ATACTAATCCCCCTTCTTTATCGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACACGAT
* * * *
1333638 ATTAATGCTTTAGTTTCACAAGAAAGGCTTTTCCTTACCAATTTTTGTAAAGTCTAAGTTTGTGT
389 ATTAATGCTTTAGTTTCACAAGAAAGGCTTTTCCTCACCAATTTTAGTAAAGTCTAAGTTCGTGC
*
1333703 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAG
454 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGCCACTATAAG
* * *
1333768 CACATTTTTCTCATTAGGATAAACGATATTGATGATTTTCTTTTGTATTGAAATCTTTTCCTTGC
519 CACATTCTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCCTTGC
* * * *
1333833 TCGATTTTCCTTCAAATCAAAGTTCATCCATTAAACAAGACATGCATCAATTCTCATAACAGTCC
584 TCGATTTTCCTTAAAATCAAAGTTCATCCATCAAACAAGACAAGAATCAATTCTCATAACAGTCC
* * *
1333898 CCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAAGATACTTGACATTAATGCT
649 CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAAGATACATGACATTAATGCT
* ** * * *
1333963 TTAGTTTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAGTCAAAGTTTTCTCTTAAATA
714 TTAGTGTCACAAGAAAAGCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTCCTCTTAAATA
** * ** *
1334028 AGACAAACATGAATACTTATGGTAAGTGCCATTC-TTTTATGGATTAGATACCATAAACATGGTC
779 AGACAAACAAAAATACTCATACTAAGTGCCATTCTTTTTA-GGATTAGACACCATAAACATGGTC
1334092 TTCTCGTTAGGATACACAGTATT
843 TTCTCGTTAGGATACACAGTATT
* *
1334115 GATTCTAGTAATGATTTTCATTCATTTTATGGTTAGGCACTATAAGCACATTCTCCGT-AATAGG
1 GATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAGCACATTCTCC-TCAATAGG
*
1334179 ATAAATGATATTGATGATTTTCTTTTGCATGTAAAACTTTGCTTTGCCCAATTTTCCTTAAAATC
65 ATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTTTGCTTTGCCCAATTTTCCTTAAAATC
* * * * *
1334244 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGACTCC-ATTCTTTTCAAGATT
130 AAACTTCATCCATTAAATAAGACAAGCATCAATTCTCATAACAGAC-CCTATTCTTTTCAAGATT
* * * *
1334308 AGGAACCAAAAACACATTCCCTT-TATTCGGATCCTTGACATTGACGC-TGGTGTCGCT-GAAAA
194 AGGAACCAAAAACACATTCCCTTCT-TTAGGATACTTAACATTGACGCTTGGTGTC-ATAGAAAA
*
1334370 AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
257 A-CTTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* ** *
1334435 CTCATACTATTCCCCCTTCTTT-TCACGATTAGGCCCCATAAACTTAGTCTTCTCATTAGGATAC
321 CTCATACTAATCCCCCTTCTTTAT--CGATTAGGAACCATAAACATAGTCTTCTCATTAGGATAC
* ** * ***
1334499 ATGATATTGGTGCTTTGGTTTGTTAAGAAAGGCTTTTTTCC-CACCAATTTTAGTAAAGTCTAAG
384 ACGATATTAATGCTTTAGTTTCACAAGAAAGGC--TTTTCCTCACCAATTTTAGTAAAGTCTAAG
*
1334563 TTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGCCA
447 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGCCA
* *
1334628 CTATAAGCACGTTCTCCTCATTAGGATGAAA-GATATTGATGATTCTT-TTTTGCA-TGGAATCT
512 CTATAAGCACATTCTCCTCATTAGGAT-AAACGATATTGATGATT-TTCTTTTGCATTGAAATCT
* ** * * * * **
1334690 TTTCTTTGCTTTATTTTCCTTAAAATCAAAGTTCATCCCTCAAATAAGGCAAGAATTAATTCTTG
575 TTTCCTTGCTCGATTTTCCTTAAAATCAAAGTTCATCCATCAAACAAGACAAGAATCAATTCTCA
* * *
1334755 TAACAGTCCCCATTCTTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGGC
640 TAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAAGATACATGAC
* * *
1334820 ATTCATGCTTTGGTGTCACAAGAAAAGCATTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGC
705 ATTAATGCTTTAGTGTCACAAGAAAAGCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT-C
* * * * * * * *
1334885 CTGTTAAATTAGATAGACAAAAATAGTCATACT-ATTCTCCATTCTTTTTAGGATTAGGCACCAT
769 CTCTTAAATAAGACAAACAAAAATACTCATACTAAGT-GCCATTCTTTTTAGGATTAGACACCAT
1334949 AAACAT
833 AAACAT
1334955 AATCGTCTCA
Statistics
Matches: 729, Mismatches: 97, Indels: 28
0.85 0.11 0.03
Matches are distributed among these distances:
864 7 0.01
865 87 0.12
866 237 0.33
867 379 0.52
868 19 0.03
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (865 bp):
GATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAGCACATTCTCCTCAATAGGA
TAAATGATATTGATGATTTTCTTTTGCATGGAAAACTTTGCTTTGCCCAATTTTCCTTAAAATCA
AACTTCATCCATTAAATAAGACAAGCATCAATTCTCATAACAGACCCTATTCTTTTCAAGATTAG
GAACCAAAAACACATTCCCTTCTTTAGGATACTTAACATTGACGCTTGGTGTCATAGAAAAACTT
TTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
ACTAATCCCCCTTCTTTATCGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACACGATAT
TAATGCTTTAGTTTCACAAGAAAGGCTTTTCCTCACCAATTTTAGTAAAGTCTAAGTTCGTGCCT
CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGCCACTATAAGCA
CATTCTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCCTTGCTC
GATTTTCCTTAAAATCAAAGTTCATCCATCAAACAAGACAAGAATCAATTCTCATAACAGTCCCC
ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAAGATACATGACATTAATGCTTT
AGTGTCACAAGAAAAGCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTCCTCTTAAATAAG
ACAAACAAAAATACTCATACTAAGTGCCATTCTTTTTAGGATTAGACACCATAAACATGGTCTTC
TCGTTAGGATACACAGTATT
Found at i:1335978 original size:475 final size:474
Alignment explanation
Indices: 1334115--1338874 Score: 5590
Period size: 475 Copynumber: 10.1 Consensus size: 474
1334105 ACACAGTATT
* * * *
1334115 GATTCTAGTAATGATTTTCATTCATTTTATGGTTAGGCACTATAAGCACATTCTCCGT-AATAGG
1 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA-CACATTCTCC-TCATTAGG
* * * * *
1334179 ATAAATGATATTGATGATTTTCTTTTGCATGTAAAACTTTGCTTTGCCCAATTTTCCTTAAAATC
64 ATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * *
1334244 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGACTCCATTCTTTTCAAGATTA
129 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTG
* * * * * *
1334309 GGAACCAAAAACACATTCCCTTTATTCGGATCCTTGACATTGACGC--TGGTGTCGC-TGAAAAA
194 GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG-AAAA
* *
1334371 GCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC
258 GCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAG
* * * *
1334436 TCATACTATTCCCCCTTCTTTTCACGATTAGGCCCCATAAACTTAGTCTTCTCATTAGGATACAT
323 TCATACTATTCCCCATTC-TTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACAC
* *
1334501 GATATTGGTGCTTTGGTTTGTTAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTAAGTTC
387 GATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* *
1334566 GTGCCTCAAATGAGACAAACGTG
452 GTGCATCAAATGAGACAAACATG
* *
1334589 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGCCACTATAAGCACGTTCTCCTCATTAGGA
1 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA-CACATTCTCCTCATTAGGA
* **
1334654 TGAAA-GATATTGATGATTCTTTTTTGCATGG-AATCTTTTCTTTGCTTTATTTTCCTTAAAATC
65 T-AAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * ** * *
1334717 AAAGTTCATCCCTCAAATAAGGCAAGAATTAATTCTTGTAACAGTCCCCATTCTTTTCAAGATTG
129 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTG
* * * *
1334782 GGAACCTAAAACACATTCCCTTCATTAGGATACATGGCATTCATGCTTTGGTGTCACAAGAAAAG
194 GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * * * * * * *
1334847 CATTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGCCTGTTAAATTAGATAGACAAAAATAGT
259 CTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGT
* * * * * * * *
1334912 CATACTATTCTCCATTCTTTTTAGGATTAGGCACCATAAACATAATCGTCTCATAAGGATGCACG
324 CATACTATTCCCCATTC-TTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACG
** *
1334977 ATATTAATGCTTTGGTTTCTT-AGAAAGGC-TTTTTCTCCACCAATTTTGGTAAAGTCTAAGTTC
388 ATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTC-CCACCAATTTTTGTAAAGTCTAAGTTC
* *
1335040 GTGCATCAAATGAGCCAAACAAG
452 GTGCATCAAATGAGACAAACATG
* * * * *
1335063 GATTCTAGTATTGATCTTCAATCATTTTTTGATTAGGCACTGTGAACACATTCTTCTCATTAGGA
1 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGGA
* * *
1335128 TAAATGATATTGATGA-TTTTTTTTGCGTGGAAATCTTTTCTTTTCCCTATTTTCCTTAGAATCA
65 TAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * * * * **
1335192 AAGTTAATCCCTTAAA-AAGAAAAGCATCGATCCCCATAATAGTCTCCATTCTAATCAAGATTGG
130 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
* * * * * *
1335256 GAACCAAAAATACATTCCTTTCATTAGGATACTTAACATTGATGCTTTGGGGT--C-------GT
195 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* ** * * * *
1335312 TTTTCTTTACACTTTTTTTGATAGAATTAAAGTTCGTCTCTTAAATAAGACAAACACGAATA-CC
260 TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTC
* *
1335376 TATACTATTCCCTATTCCTTTCATGATTAGGCACCATAAACTTAGTCTTCTTATTAGGATACACG
325 -ATACTATTCCCCATT-CTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACG
* * *
1335441 ATATTGGTGCTTTGGTTTCTTAAGAAAGGCGTTTTTCCCACTAATTTTTGAAAAGTCTAAGTTCG
388 ATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
*
1335506 TGCCTCAAATGAGACAAACATG
453 TGCATCAAATGAGACAAACATG
* *
1335528 GATTCTAGTAATGATCTTCATTCATTATGTGATTAGGCACTATAAGCACATTCCCCTCATTAGGA
1 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA-CACATTCTCCTCATTAGGA
** *
1335593 TAAATGACGTTGTTGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
65 TAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
** * * *
1335658 AAGTTCATCCCTTAAATAAGACAAAAATCAATTCTCGTAACATTCCCCATTCTTTTCAAGATTGG
130 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
* **
1335723 GAAACAAAAACACATTCCCTTCATTAGGATACAACACATTGATGCTTTGGTGTCGCAA-AAACAG
195 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA-AG
** * * *
1335787 CTTTTCTTTCCACAATTTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACAAGAGTAGA
259 CTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGT
* * * * *
1335852 CATACTCTTCCCCATTCATTCATGATTTGGCACCATAAACTTAGCCTTCTCATTAGGATAAACGA
324 CATACTATTCCCCATTCTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGA
* * * * *
1335917 TATTAGTGCTTTGGTTTTTTAAGAAAGGCTTTTTTCCCACCAATTTTTTTAAAGCCTAAGTTCAT
389 TATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT
* * * *
1335982 GCATAAAAAGAGCCAAACAAG
454 GCATCAAATGAGACAAACATG
* * * * * * *
1336003 GATTCTAGTATTGATCTTCATTCATTTTGTGATTACGTAATATAAAAACATTCTCGTCAATAGGA
1 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGGA
* * *
1336068 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCA
65 TAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * * *
1336133 AAGTTCATCCCCTAAACAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCCTTTT-AGGATTT
130 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT-CTTTTCAAGATTG
*
1336197 GGAACC-----TACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
194 GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * * * *
1336257 CTTTTCTTTCCACTGTTTTTGATAGAATTAAAGTTCGTCTCTTAAATAAGACAAACACGAATACT
259 CTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGT
*
1336322 CATATTATTCCCCATTCCTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACG
324 CATACTATTCCCCATT-CTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACG
* **
1336387 ATATTGGTGCTTTGGTTTCTTAAGAAAGG-TGTTTTTCCCACTAATTTTTAAAAAGTCTAAGTTC
388 ATATTGGTGCTTTGGTTTCTTAAGAAAGGCT-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
*
1336451 GTGCCTCAAATGAGACAAACATG
452 GTGCATCAAATGAGACAAACATG
* *
1336474 GATTCTAGTAATGATCTTCATTCATTATGTGATTAGGCACTATAAGCACATTCCCCTCATTAGGA
1 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA-CACATTCTCCTCATTAGGA
* * *
1336539 TAAATGACATTGTTGATTTTTTTTTTGCATGGAAATCTTTTCTTTTCCCTATTTTCCTTAAAATC
65 TAAATGATATTGATGA-TTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* ** * * *
1336604 AAAGTTCA-CACCTAAAATAAGACAAAAATCAATTCTCGTAACATTCCCCATTCTTTTCAAGATT
129 AAAGTTCATC-CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT
* * * ** ** *
1336668 AGAAAACAAAAACACATTCCCTTCATTAGGATACAACACATTGATGCTTTGGTGGT-ATAAAAAA
193 GGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT-GTCGCAAGAAA
** * *
1336732 AGCTTTTCTTTCCA-CAATTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAATAAGAGTA
257 AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATA
* * * * *
1336796 GACATACTCTTCCCCATTCTTTCATGATTAGGCACCATAAGCTTAGCCTTCTCATTAGGATAAAC
322 GTCATACTATTCCCCATTCTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACAC
* * * *
1336861 GATATTGGTGCTTTGGTTT-TCTAAGAAAGGCTTTTTTCTCACCTATTTTTTTAAAGCCTAAGTT
387 GATATTGGTGCTTTGGTTTCT-TAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTT
* * * * *
1336925 CATGCATAAAAAGAGCCAAACAAG
451 CGTGCATCAAATGAGACAAACATG
* * * * * * *
1336949 GATTCTAG-AATTGATCTTCATTCATTTTGTGATTACGTAATGTAAAAACATTCTCGTCAATAGG
1 GATTCTAGTAA-TGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGG
* * * *
1337013 ATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTATGCCCTATTTTACTTAAAATC
64 ATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * *
1337078 AAAGTTCATCCCTTAAACAAGACAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAGGATTT
129 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTG
* * * *
1337143 AGAATCTAAAACAAATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
194 GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * * * *
1337208 CTTTTCTCTCCATCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
259 CTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGT
* * * * * * *
1337273 CATAGTAATCCCCATTCTTTTATGGATTAGGAACCATAAACATAGTCTACTCATTAGGATACATG
324 CATACTATTCCCCATTCTTTCAT-GATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACG
* * ** * *
1337338 ATATTGATGCTTTGGTTT-TGCAAGAAAGGC-TTTTTCCTTGCAAATTTTTGTAAAGTCTTAGTT
388 ATATTGGTGCTTTGGTTTCT-TAAGAAAGGCTTTTTTCC-CACCAATTTTTGTAAAGTCTAAGTT
1337401 --TGCACCTCAAATGAGACAAACATG
451 CGTGCA--TCAAATGAGACAAACATG
* * * *
1337425 GATTCTAGTATTGATCTTCATTCATTTTGGGATTAGGCATTACGAACACATTCTCCTCATTAGGA
1 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA-TAACACATTCTCCTCATTAGGA
* *
1337490 TAAATGATATTGATGATTTTCTTTTATG--TGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAAT
65 TAAATGATATTGATGATTTT-TTTT-TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * *
1337553 CAAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAGGATT
128 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT
* * * * *
1337618 AGGAACCAAAAACACGTTCCCTTCATTAGGATACTTGACATCGATGCTTTGGTG-CTGCTAGAAA
193 GGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAA
* * *
1337682 AG-ATTTCTTTCCATCGTTTTTGATAGAATCAAAGTTCT-TCTCTTAAATAAGACAAACATGAAT
257 AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTT-TGTCTCTTAAATAAGACAAACAAGAAT
*
1337745 -GCTCATACTATT-CCCATTTTTTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGAT
321 AG-TCATACTATTCCCCA--TTCTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGAT
* * * * *
1337808 ACATGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCTCACTAATTCTTGTAAAGTCTTA
383 ACACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAA
*
1337873 GTTCGTACATCAAATGAGACAAACATG
448 GTTCGTGCATCAAATGAGACAAACATG
* * * *
1337900 AATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATGAACACATTCTCTTTATTAGGA
1 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCATTAGGA
* *
1337965 TAAATGATATTGATGATTTTTTTTTTG--TGGAAATCTTTCCTTTG-CCTCATTTCCCTTAAAAT
65 TAAATGATATTGATGA-TTTTTTTTTGCATGGAAATCTTTTCTTTGCCCT-ATTTTCCTTAAAAT
* * * * * * * * * *
1338027 CAAAGTTCATCCTTTAAAAAAGATAAGCATCAATTCTCATTATAGTCTCCATTCTTTTTAGGAAT
128 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT
* * ** * * *
1338092 GGGAACCAAAAGCACTTTCCCTTCATTAGGATACACAACATTGATACTTTGGGGTCGCAAGAAAG
193 GGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
* * * ** * * *
1338157 GCTTTTCTTTTCACCATCTTTGATAGAATCAAAGTTTACCTTTTAAATAGGACAAACATGAATAG
258 GCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAG
* * * * ** ** * *
1338222 TCAGACTAATCCCCATTCTTTTCAAGATTAGGTACCATAAACACAGTCTTCTCAAAAGGATCCAT
323 TCATACTATTCCCCATTC-TTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACAC
* * *
1338287 GATATTGATGCTTTGGTTT-TGCTAA-AAAGGCTTTCTTCCTACCAATTTTTGTAAAGTCTAAGT
387 GATATTGGTGCTTTGGTTTCT--TAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGT
** * * * *
1338350 TAATGCCTCAAATAAGCCAAATAAT-
450 TCGTGCATCAAATGAGACAAA-CATG
* * * *
1338375 GATTCTAG---T-ATCTTCATTCATTTTGTGATT----AC-GTAATATATTCTCGTCATTAGGAT
1 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAACACATTCTCCTCATTAGGAT
* * * *
1338431 AAATGATATTGATGATTTTCTTTTGCATAGAAATCTTTTCTATGCCCTATTTTACTTAAAATCAA
66 AAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * * *
1338496 GGTTCA-CCCTTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCACTCTTTTTAGGATTGG
131 AGTTCATCCC-TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
* * *
1338560 GAACCTAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTTGCAAGAAAAGC
195 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * ** * * ** **
1338625 TTTTCTCTACACCACTTATGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACAAGTGTACAC
260 TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTC
** * * *
1338690 ATACTCCTCCCCATTCTTTCACGATTAGGCACCATAAACTTAGCCTTCTCATTAGGATAAACGAT
325 ATACTATTCCCCATTCTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGAT
* *
1338755 ATTGGTGCTTTGCTTGCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTG
390 ATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTG
* * *
1338820 CATCAAATGAGCCAAATAAG
455 CATCAAATGAGACAAACATG
* *
1338840 GATTGTAGTATTGATCTTCATTCATTTTGTGATTA
1 GATTCTAGTAATGATCTTCATTCATTTTGTGATTA
1338875 TGTAATATAA
Statistics
Matches: 3628, Mismatches: 569, Indels: 182
0.83 0.13 0.04
Matches are distributed among these distances:
463 1 0.00
464 136 0.04
465 268 0.07
466 265 0.07
467 87 0.02
468 1 0.00
469 22 0.01
470 120 0.03
471 215 0.06
472 95 0.03
473 226 0.06
474 554 0.15
475 1094 0.30
476 475 0.13
477 65 0.02
478 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (474 bp):
GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAACACATTCTCCTCATTAGGAT
AAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
TTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCA
TACTATTCCCCATTCTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATA
TTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGC
ATCAAATGAGACAAACATG
Found at i:1336519 original size:946 final size:943
Alignment explanation
Indices: 1334115--1338897 Score: 5818
Period size: 946 Copynumber: 5.1 Consensus size: 943
1334105 ACACAGTATT
* * * * * **
1334115 GATTCTAGTAATGATTTTCATTCATTTTATGGTTAGGCACTATAAGCACATTCTCCGT-AATAGG
1 GATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCAATATAAAAACATTCT-CGTCAATAGG
* * * *
1334179 ATAAATGATATTGATGATTTTCTTTTGCATGTAAAACTTTGCTTTGCCCAATTTTCCTTAAAATC
65 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * *
1334244 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGACTCCATTCTTTTCAAGATTA
130 AAAGTTCATCCCTTAAACAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTT-AGGATTG
* * * * * * *
1334309 GGAACCAAAAACACATTCCCTTTATTCGGATCCTTGACATTGACGC--TGGTGTCGC-TGAAAAA
194 GGAACC----ATACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG-AAAA
*
1334371 GCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC
254 GCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC
* * * *
1334436 TCATACTATTCCCCCTTCTTTTCACGATTAGGCCCCATAAACTTAGTCTTCTCATTAGGATACAT
319 TCATACTATTCCCCATTCCTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACAT
*
1334501 GATATTGGTGCTTTGGTTTGTTAAGAAAGGCTTTTTTCCCACCAATTTTAGTAAAGTCTAAGTTC
384 GATATTGGTGCTTTGGTTT-TTAAGAAAGG-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* *
1334566 GTGCCTCAAATGAGACAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGCCACTA
447 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* *
1334631 TAAGCACGTTCTCCTCATTAGGATGAAA-GATATTGATGATTCTTTTTTGCATGG-AATCTTTTC
512 TAAGCACATTCTCCTCATTAGGAT-AAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTC
** * * * *
1334694 TTTGCTTTATTTTCCTTAAAATCAAAGTTCATCCCTCAAATAAGGCAAGAATTAATTCTTGTAAC
576 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATCAATTCTCGTAAC
* * *
1334759 AGTCCCCATTCTTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGGCATTC
641 AGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * * ** * *
1334824 ATGCTTTGGTGTCACAAGAAAAGCATTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGCCTGT
706 ATGCTTTGGTGTCGCAA-AAAAGCTTTTCTTTCCACAATTTTTGATAGAATCAAAGTTTGTCTCT
* * * * * * * * * * *
1334889 TAAATTAGATAGACAAAAATAGTCATACTATTCTCCATTCTTTTTAGGATTAGGCACCATAAACA
770 TAAATAAGACAAACAAGAGTAGACATACTCTTCCCCATTC-TTTCATGATTAGGCACCATAAACT
** * * ** **
1334954 TAATCGTCTCATAAGGATGCACGATATTAATGCTTTGGTTTCTT-AGAAAGGC-TTTTTCTCCAC
834 TAGCCTTCTCATTAGGATAAACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTC-CCAC
*
1335017 CAATTTTGGTAAAGTCTAAGTTCGTGCATCAAATGAGCCAAACAAG
898 CAATTTTTGTAAAGTCTAAGTTCGTGCATCAAATGAGCCAAACAAG
* * * * * * *
1335063 GATTCTAGTATTGATCTTCAATCATTTTTTGATTAGGCACTGTGAACACATTCTTC-TCATTAGG
1 GATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCAATATAAAAACATTC-TCGTCAATAGG
* * *
1335127 ATAAATGATATTGATGATTTT-TTTTGCGTGGAAATCTTTTCTTTTCCCTATTTTCCTTAGAATC
65 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * * * *
1335191 AAAGTTAATCCCTTAAA-AAGAAAAGCATCGATCCCCATAATAGTCTCCATTCTAATCAAGATTG
130 AAAGTTCATCCCTTAAACAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCT-TTTAGGATTG
* * * *
1335255 GGAACCAAAAATACATTCCTTTCATTAGGATACTTAACATTGATGCTTTGGGGT--C-------G
194 GGAACC----ATACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * * * * *
1335311 TTTTTCTTTACACTTTTTTTGATAGAATTAAAGTTCGTCTCTTAAATAAGACAAACACGAATAC-
255 CTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* * *
1335375 CTATACTATTCCCTATTCCTTTCATGATTAGGCACCATAAACTTAGTCTTCTTATTAGGATACAC
320 C-ATACTATTCCCCATTCCTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACAT
* * *
1335440 GATATTGGTGCTTTGGTTTCTTAAGAAAGGCGTTTTTCCCACTAATTTTTGAAAAGTCTAAGTTC
384 GATATTGGTGCTTTGGTTT-TTAAGAAAGG-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
*
1335505 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTATGTGATTAGGCACTA
447 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* ** *
1335570 TAAGCACATTCCCCTCATTAGGATAAATGACGTTGTTGATTTTTTTTTGCATGGAAATCTTTTCT
512 TAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCT
*
1335635 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAAAATCAATTCTCGTAACA
577 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATCAATTCTCGTAACA
* * **
1335700 TTCCCCATTCTTTTCAAGATTGGGAAACAAAAACACATTCCCTTCATTAGGATACAACACATTGA
642 GTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
*
1335765 TGCTTTGGTGTCGCAAAAACAGCTTTTCTTTCCACAATTTTTGATAGAATCAAAGTTTTTCTCTT
707 TGCTTTGGTGTCGCAAAAA-AGCTTTTCTTTCCACAATTTTTGATAGAATCAAAGTTTGTCTCTT
* *
1335830 AAATAAGACAAACAAGAGTAGACATACTCTTCCCCATTCATTCATGATTTGGCACCATAAACTTA
771 AAATAAGACAAACAAGAGTAGACATACTCTTCCCCATTCTTTCATGATTAGGCACCATAAACTTA
* *
1335895 GCCTTCTCATTAGGATAAACGATATTAGTGCTTTGGTTTTTTAAGAAAGGCTTTTTTCCCACCAA
836 GCCTTCTCATTAGGATAAACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAA
* * * * *
1335960 TTTTTTTAAAGCCTAAGTTCATGCATAAAAAGAGCCAAACAAG
901 TTTTTGTAAAGTCTAAGTTCGTGCATCAAATGAGCCAAACAAG
* *
1336003 GATTCTAGTATTGATCTTCATTCATTTTGTGATTACGTAATATAAAAACATTCTCGTCAATAGGA
1 GATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCAATATAAAAACATTCTCGTCAATAGGA
* *
1336068 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCA
66 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * *
1336133 AAGTTCATCCCCTAAACAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCCTTTTAGGATTTG
131 AAGTTCATCCCTTAAACAAGACAAGCATCGATTCTCGTAATAGTCTCCATT-CTTTTAGGATTGG
1336198 GAACC-TACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
195 GAACCATACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* * * *
1336262 CTTTCCACTGTTTTTGATAGAATTAAAGTTCGTCTCTTAAATAAGACAAACACGAATACTCATAT
260 CTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAC
*
1336327 TATTCCCCATTCCTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATT
325 TATTCCCCATTCCTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACATGATATT
* **
1336392 GGTGCTTTGGTTTCTTAAGAAAGGTGTTTTTCCCACTAATTTTTAAAAAGTCTAAGTTCGTGCCT
390 GGTGCTTTGGTTT-TTAAGAAAGGT-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
*
1336457 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTATGTGATTAGGCACTATAAGCA
453 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCA
* * * *
1336522 CATTCCCCTCATTAGGATAAATGACATTGTTGATTTTTTTTTTGCATGGAAATCTTTTCTTTTCC
518 CATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTTTTTTGCATGGAAATCTTTTCTTTGCC
* * *
1336587 CTATTTTCCTTAAAATCAAAGTTCA-CACCTAAAATAAGACAAAAATCAATTCTCGTAACATTCC
582 CTATTTTCCTTAAAATCAAAGTTCATC-CCTTAAATAAGACAAGAATCAATTCTCGTAACAGTCC
* * * **
1336651 CCATTCTTTTCAAGATTAGAAAACAAAAACACATTCCCTTCATTAGGATACAACACATTGATGCT
646 CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
***
1336716 TTGGTGGTATAAAAAAAGCTTTTCTTTCCACAA-TTTTGATAGAATCAAAGTTTGTCTCTTAAAT
711 TTGGT-GTCGCAAAAAAGCTTTTCTTTCCACAATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* *
1336780 AAGACAAATAAGAGTAGACATACTCTTCCCCATTCTTTCATGATTAGGCACCATAAGCTTAGCCT
775 AAGACAAACAAGAGTAGACATACTCTTCCCCATTCTTTCATGATTAGGCACCATAAACTTAGCCT
* *
1336845 TCTCATTAGGATAAACGATATTGGTGCTTTGGTTT-TCTAAGAAAGGCTTTTTTCTCACCTATTT
840 TCTCATTAGGATAAACGATATTGGTGCTTTGGTTTCT-TAAGAAAGGCTTTTTTCCCACCAATTT
* * * * *
1336909 TTTTAAAGCCTAAGTTCATGCATAAAAAGAGCCAAACAAG
904 TTGTAAAGTCTAAGTTCGTGCATCAAATGAGCCAAACAAG
* * * *
1336949 GATTCTAGAATTGATCTTCATTCATTTTGTGATTACGTAATGTAAAAACATTCTCGTCAATAGGA
1 GATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCAATATAAAAACATTCTCGTCAATAGGA
* * *
1337014 TAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTATGCCCTATTTTACTTAAAATCA
66 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * **
1337079 AAGTTCATCCCTTAAACAAGACAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAGGATTTA
131 AAGTTCATCCCTTAAACAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTT-AGGATTGG
* *
1337144 GAATCTAAAACAAATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
195 GAA-C-CATAC--ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* *
1337209 TTTTCTCTCCA-TCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
256 TTTTCTTTCCACT-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* * * * * *
1337273 CATAGTAATCCCCATT-CTTTTATGGATTAGGAACCATAAACATAGTCTACTCATTAGGATACAT
320 CATACTATTCCCCATTCCTTTCAT-GATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACAT
* * * ** * * *
1337337 GATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCTTGCAAATTTTTGTAAAGTCTTAGTTT
384 GATATTGGTGCTTTGGTTTT-TAAGAAAGGTTTTTTCC-CACCAATTTTTGTAAAGTCTAAGTTC
** * * *
1337402 GCACCTCAAATGAGACAAACATGGATTCTAGTATTGATCTTCATTCATTTTGGGATTAGGCATTA
447 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* *
1337467 CGAA-CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTATG--TGAAAATCTTT
512 -TAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTT-TGCATGGAAATCTTT
* * * *
1337529 TCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTCGTA
574 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATCAATTCTCGTA
* * * * * *
1337594 ACAATCTCCATTCTTTTCAGGATTAGGAACCAAAAACACGTTCCCTTCATTAGGATACTTGACAT
639 ACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
* * * *
1337659 CGATGCTTTGGTG-CTGCTAGAAAAG-ATTTCTTTCCATC-GTTTTTGATAGAATCAAAGTTCT-
704 TGATGCTTTGGTGTC-GC-AAAAAAGCTTTTCTTTCCA-CAATTTTTGATAGAATCAAAGTT-TG
* * * * *
1337720 TCTCTTAAATAAGACAAACATGAAT-GCTCATACTATT-CCCATTTTTTTTCATGATTAGGCACC
765 TCTCTTAAATAAGACAAACAAGAGTAG-ACATACTCTTCCCCA--TTCTTTCATGATTAGGCACC
* * *
1337783 ATAAACTTAGTCTTCTCATTAGGATACATGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTT
827 ATAAACTTAGCCTTCTCATTAGGATAAACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTT
* * * * * * *
1337848 TCTCACTAATTCTTGTAAAGTCTTAGTTCGTACATCAAATGAGACAAACATG
892 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCATCAAATGAGCCAAACAAG
* * * * * * *
1337900 AATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATGAACACATTCTCTTTATTAGGA
1 GATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCAATATAAAAACATTCTCGTCAATAGGA
* * *
1337965 TAAATGATATTGATGATTTTTTTTTTG--TGGAAATCTTTCCTTTG-CCTCATTTCCCTTAAAAT
66 TAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT-ATTTTCCTTAAAAT
* * * * * * *
1338027 CAAAGTTCATCCTTTAAAAAAGATAAGCATCAATTCTCATTATAGTCTCCATTCTTTTTAGGAAT
129 CAAAGTTCATCCCTTAAACAAGACAAGCATCGATTCTCGTAATAGTCTCCATTC-TTTTAGGATT
* ** * * *
1338092 GGGAACCAAAAGCACTTTCCCTTCATTAGGATACACAACATTGATACTTTGGGGTCGCAAGAAAG
193 GGGAACC-ATA-CA--TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
* ** * ** * * *
1338157 GCTTTTCTTTTCACCATCTTTGATAGAATCAAAGTTTACCTTTTAAATAGGACAAACATGAATAG
254 GCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC
* * * * * ** ** *
1338222 TCAGACTAATCCCCATTCTTTTCAAGATTAGGTACCATAAACACAGTCTTCTCAAAAGGATCCAT
319 TCATACTATTCCCCATTCCTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACAT
* * *
1338287 GATATTGATGCTTTGGTTTTGCTAA-AAAGGCTTTCTTCCTACCAATTTTTGTAAAGTCTAAGTT
384 GATATTGGTGCTTTGGTTTT--TAAGAAAGG-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTT
** * * *
1338351 AATGCCTCAAATAAGCCAAATAAT-GATTCTAG---T-ATCTTCATTCATTTTGTGATT----AC
446 CGTGCCTCAAATGAGACAAA-CATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
* * * * * *
1338407 -GTAA-TATATTCTCGTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAATCTTTT
510 TATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTT
* * * * * *
1338470 CTATGCCCTATTTTACTTAAAATCAAGGTTCA-CCCTTTAAATAAGACAAGCATCGATTCTTGTA
575 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC-TTAAATAAGACAAGAATCAATTCTCGTA
* * * * *
1338534 ACAGTCTCCACTCTTTTTAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACAT
639 ACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACAT
* * * * * * *
1338599 TAATGCTTTGGTGTTGCAAGAAAAGCTTTTCTCTACACCACTTATGATAGAATCAAAGTTTGTCT
704 TGATGCTTTGGTGTCGCAA-AAAAGCTTTTCTTTCCACAATTTTTGATAGAATCAAAGTTTGTCT
* * * * *
1338664 CCTAAATAAGACAAACAAGTGTACACATACTCCTCCCCATTCTTTCACGATTAGGCACCATAAAC
768 CTTAAATAAGACAAACAAGAGTAGACATACTCTTCCCCATTCTTTCATGATTAGGCACCATAAAC
* *
1338729 TTAGCCTTCTCATTAGGATAAACGATATTGGTGCTTTGCTTGCTTAAGAAAGGCTTTTTTCCCAC
833 TTAGCCTTCTCATTAGGATAAACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCAC
*
1338794 CAATTTTTGTAAAGTCTAAGTTCGTGCATCAAATGAGCCAAATAAG
898 CAATTTTTGTAAAGTCTAAGTTCGTGCATCAAATGAGCCAAACAAG
* * *
1338840 GATTGTAGTATTGATCTTCATTCATTTTGTGATTATGTAATATAAAAACATTCTCGTC
1 GATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCAATATAAAAACATTCTCGTC
1338898 TGTAGACACC
Statistics
Matches: 3375, Mismatches: 385, Indels: 158
0.86 0.10 0.04
Matches are distributed among these distances:
937 39 0.01
938 6 0.00
939 348 0.10
940 686 0.20
941 113 0.03
942 45 0.01
943 2 0.00
945 6 0.00
946 761 0.23
947 233 0.07
948 85 0.03
949 26 0.01
950 504 0.15
951 507 0.15
952 14 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (943 bp):
GATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCAATATAAAAACATTCTCGTCAATAGGA
TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
AAGTTCATCCCTTAAACAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTAGGATTGGG
AACCATACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
ATTCCCCATTCCTTTCATGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACATGATATTG
GTGCTTTGGTTTTTAAGAAAGGTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACAT
TCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTAT
TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATCAATTCTCGTAACAGTCCCCATT
CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
GTCGCAAAAAAGCTTTTCTTTCCACAATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
AACAAGAGTAGACATACTCTTCCCCATTCTTTCATGATTAGGCACCATAAACTTAGCCTTCTCAT
TAGGATAAACGATATTGGTGCTTTGGTTTCTTAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAA
GTCTAAGTTCGTGCATCAAATGAGCCAAACAAG
Found at i:1337240 original size:159 final size:159
Alignment explanation
Indices: 1335650--1338680 Score: 556
Period size: 158 Copynumber: 19.2 Consensus size: 159
1335640 CTATTTTCCT
* ** * *
1335650 TAAAATCAAAGTTCATCCCTTAAATAAGACAAAAATCAATTCTCGTAACATTCCCCATTCTTTTC
1 TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATTGATTCTCGTAACAATCTCCATTCTTTT-
* * * * **
1335715 AAGATTGGGAAAC-AAAAACACATTC-CCTTCATTAGGATACAACACATTGATGCTTTGGTGTCG
65 AGGATTAGGAATCTACAAACACATTCTCC-TCATTAGGATACATGACATTGATGCTTTGGTGTCG
*
1335778 CAA-AAACAGCTTTTCTTTCCA-CAATTTTTGA
129 CAAGAAA-AGCTTTTCTCTCCATC-ATTTTTGA
* ** * * *** * ** * *
1335809 TAGAATCAAAGTTTTTCTCTTAAATAAGACAAACA-AGAGTAGACAT-ACTCTTCCCCATTCATT
1 TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATTGA-TTCTCGTAAC-AATCTCCATTCTTT
* * * * * * ** ** * * * * * *
1335872 CATGATTTGGCA-CCATAAACTTAGCCTTCTCATTAGGATAAACGATATT-AGTGCTTTGGTTTT
64 TAGGATTAGGAATCTACAAACACATTCTCCTCATTAGGATACATGACATTGA-TGCTTTGGTGTC
** * * * *
1335935 TTAAGAAAGGCTTTTTTC-CCACCAATTTTT-T
128 GCAAGAAAAGCTTTTCTCTCCATC-ATTTTTGA
** * * * ** * *** *
1335966 TAAAGCCTAAGTTCAT-GCATAAA-AAGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATT
1 TAAAATCAAAGTTCATCCCTTAAATAAGA--CAAACATTGATTCTCGTAACAATCTCCATTC-TT
* * * * * * * ** *
1336029 TT-GTGATTACGTAATATA-AAA-ACATTCTCGTCAATAGGATAAATGATATTGATGATTTTCTT
63 TTAG-GATTA-GGAATCTACAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTGGTG
* * * * * * ***
1336091 TTGCATGGAAATCTTTTCTATGCCCT-ATTTTACT
126 TCGCAAGAAAAGCTTTTCTCT-CCATCATTTTTGA
* * * *
1336125 TAAAATCAAAGTTCATCCCCTAAACAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCCTTTT
1 TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATTGATTCTCGTAACAATCTCCATT-CTTTT
* *
1336190 AGGATTTGGAA-C--C---TACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
65 AGGATTAGGAATCTACAAACACATTCTCC-TCATTAGGATACATGACATTGATGCTTTGGTGTCG
* *
1336248 CAAGAAAAGCTTTTCTTTCCA-CTGTTTTTGA
129 CAAGAAAAGCTTTTCTCTCCATC-ATTTTTGA
* * * * * * * ** * *
1336279 TAGAATTAAAGTTCGTCTCTTAAATAAGACAAACA-CGAATACTCATATTATTCCCCATTCCTTT
1 TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATTG-ATTCTCGTAACAATCTCCATT-CTTT
* * * * * ** * * * * * * *
1336343 CATGATTAGGCA-CCATAAACTTAGTCTTCTCATTAGGATACACGATATTGGTGCTTTGGTTTCT
64 TAGGATTAGGAATCTACAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* * * *
1336407 TAAG-AAAGGTGTTTTTC-CCACTAATTTTT-A
129 CAAGAAAAGCT-TTTCTCTCCA-TCATTTTTGA
* * * * * * * ** * *
1336437 -AAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC-ATT
1 TAAAA-TCAAAGTTCATCCCTTAAATAAGACAAACATTGATTCTCGTAACAATCTCCATTCTTTT
* * * * * * * ** *
1336500 ATGTGATTAGGCA-CTATAAGCACATTCCCCTCATTAGGATAAATGACATTGTTGATTTTTTTTT
65 A-G-GATTAGGAATCTACAAACACATTCTCCTCATTAGGATACATGACATTGATG-CTTTGGTGT
* * * * * * ***
1336564 TGCATGGAAATCTTTTCTTTTCCCT-ATTTTCCT
127 CGCAAGAAAAGCTTTTC-TCTCCATCATTTTTGA
* * ** * *
1336597 TAAAATCAAAGTTCA-CACCTAAAATAAGACAAAAATCAATTCTCGTAACATTCCCCATTCTTTT
1 TAAAATCAAAGTTCATC-CCTTAAATAAGACAAACATTGATTCTCGTAACAATCTCCATTCTTTT
* * * * **
1336661 CAAGATTAGAAAAC-AAAAACACATTC-CCTTCATTAGGATACAACACATTGATGCTTTGGTGGT
65 -AGGATTAGGAATCTACAAACACATTCTCC-TCATTAGGATACATGACATTGATGCTTTGGT-GT
** * * *
1336724 -ATAAAAAAAGCTTTTCTTTCCA-CAATTTTGA
127 CGCAAGAAAAGCTTTTCTCTCCATCATTTTTGA
* ** * * * *** * ** *
1336755 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAATA-AGAGTAGACAT-ACTCTTCCCCATTCTTT
1 TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATTGA-TTCTCGTAAC-AATCTCCATTCTTT
* * * * * * ** ** * * * * * *
1336818 CATGATTAGGCA-CCATAAGCTTAGCCTTCTCATTAGGATAAACGATATTGGTGCTTTGGTTTTC
64 TAGGATTAGGAATCTACAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTGG-TGTC
* * * * *
1336882 -TAAGAAAGGCTTTTTTCT-CACCTATTTTT-T
128 GCAAGAAAAGCTTTTCTCTCCATC-ATTTTTGA
** * * * ** * ** *
1336912 TAAAGCCTAAGTTCAT-GCATAAA-AAGAGCCAAACAAGGATTCTAG-AATTGATCTTCATTCAT
1 TAAAATCAAAGTTCATCCCTTAAATAAGA--CAAACATTGATTCTCGTAA-CAATCTCCATTC-T
* * * * * * * **
1336974 TTT-GTGATTACGTAATGTA-AAA-ACATTCTCGTCAATAGGATAAATGATATTGATGATTTTCT
62 TTTAG-GATTA-GGAATCTACAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTGGT
* * ** * * * * ***
1337036 TTTGCGTGGAAATCTTTTCTATGCCCT-ATTTTACT
125 GTCGCAAGAAAAGCTTTTCTCT-CCATCATTTTTGA
* * * *
1337071 TAAAATCAAAGTTCATCCCTTAAACAAGACAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTC
1 TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATTGATTCTCGTAACAATCTCCATTCTTTT-
*
1337136 AGGATTTA-GAATCTA-AAACAAATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
65 AGGA-TTAGGAATCTACAAACACATTCTCC-TCATTAGGATACATGACATTGATGCTTTGGTGTC
*
1337198 GCAAGAAAAGCTTTTCTCTCCATCGTTTTTGA
128 GCAAGAAAAGCTTTTCTCTCCATCATTTTTGA
* * ** * * * ** *
1337230 TAGAGTCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATACTCATAGTAATCCCCATTCTTTT
1 TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATTG-ATTCTCGTAACAATCTCCATTCTTTT
* * * * * * * *
1337294 ATGGATTAGGAA-CCATAAACATAGTCTACTCATTAGGATACATGATATTGATGCTTTGGTTTTG
65 A-GGATTAGGAATCTACAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* * *
1337358 CAAGAAAGGCTTTT-TCCTTGCA-AATTTTTG-
129 CAAGAAAAGCTTTTCT-C-TCCATCATTTTTGA
* ** * * * * *** *
1337388 TAAAGTCTTAGTT--TGCACCTCAAATGAGACAAACATGGATTCTAGTATTGATCTTCATTCATT
1 TAAAATCAAAGTTCAT-C-CCTTAAATAAGACAAACATTGATTCTCGTAACAATCTCCATTC-TT
* * * * * * ** * *
1337451 TTGGGATTAGGCAT-TACGAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTT
63 TTAGGATTAGGAATCTACAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTGGTGTC
**** * * * ***
1337515 ATGTGAAAATCTTTTCTTTGCC-TTATTTTCCT
128 GCAAGAAAAGCTTTTCTCT-CCATCATTTTTGA
* * *
1337547 TAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTC
1 TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATTGATTCTCGTAACAATCTCCATTCTTTT-
* * * * *
1337612 AGGATTAGGAA-CCAAAAACACGTTC-CCTTCATTAGGATACTTGACATCGATGCTTTGGTG-CT
65 AGGATTAGGAATCTACAAACACATTCTCC-TCATTAGGATACATGACATTGATGCTTTGGTGTC-
* * * *
1337674 GCTAGAAAAG-ATTTCTTTCCATCGTTTTTGA
128 GCAAGAAAAGCTTTTCTCTCCATCATTTTTGA
* * * * * * *
1337705 TAGAATCAAAGTTCTTCTCTTAAATAAGACAAACA-TGAATGCTCAT-ACTAT-TCCCATTTTTT
1 TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATTG-ATTCTCGTAACAATCT-CCA-TTCTT
* * * * ** * * * * *
1337767 TTCATGATTAGGCA-CCATAAACTTAGTCTTCTCATTAGGATACATGATATTGGTGCTTTGGTTT
63 TT-AGGATTAGGAATCTACAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTGGTGT
** * * * *
1337831 CTTAAGAAAGGCTTTTTTCT-CACTAATTCTTG-
127 CGCAAGAAAAGCTTTTCTCTCCA-TCATTTTTGA
* ** * * * * * * *** *
1337863 TAAAGTCTTAGTTCGTACATCAAATGAGACAAACA-TGAATTCTAGTATTGATCTTCATTCATTT
1 TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATTG-ATTCTCGTAACAATCTCCATTC-TTT
* ** * * * * * ** *
1337927 T-GTGATTAGGCA-CTATGAACACATTCTCTTTATTAGGATAAATGATATTGATGATTTTTTTTT
64 TAG-GATTAGGAATCTACAAACACATTCTCCTCATTAGGATACATGACATTGATG-CTTTGGTGT
* * * * * * ****
1337990 TG--TGGAAATCTTTCCTTTGCC-TCATTTCCCT
127 CGCAAGAAAAGCTTTTCTCT-CCATCATTTTTGA
* * * * ** * * * *
1338021 TAAAATCAAAGTTCATCCTTTAAAAAAGATAAGCATCAATTCTCATTATAGTCTCCATTCTTTTT
1 TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATTGATTCTCGTAACAATCTCCATTC-TTTT
* * * * ** * *
1338086 AGGAATGGGAA-CCA-AAAGCACTTTC-CCTTCATTAGGATACACAACATTGATACTTTGGGGTC
65 AGGATTAGGAATCTACAAA-CACATTCTCC-TCATTAGGATACATGACATTGATGCTTTGGTGTC
* * * * *
1338148 GCAAGAAAGGCTTTTCTTTTCACCATCTTTGA
128 GCAAGAAAAGCTTTTCTCTCCATCATTTTTGA
* * * * * * *
1338180 TAGAATCAAAGTTTA-CCTTTTAAATAGGACAAACA-TGA--ATAGTCAGACTAATCCCCATTCT
1 TAAAATCAAAGTTCATCC-CTTAAATAAGACAAACATTGATTCTCGT-A-AC-AATCTCCATTCT
* * * * * * ** * * *
1338241 TTTCAAGATTAGGTA-CCATAAACACAGTCTTCTCAAAAGGATCCATGATATTGATGCTTTGGTT
62 TTT-AGGATTAGGAATCTACAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTGGTG
* * *
1338305 TTGCTAA-AAAGGC-TTTCT-TCCTACCAATTTTTG-
126 TCGC-AAGAAAAGCTTTTCTCTCC-ATC-ATTTTTGA
* * * * * * * * * *
1338338 TAAAGTCTAAGTTAATGCCTCAAATAAGCCAAATAATGATTCTAGT----ATCTTCATTCATTTT
1 TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATTGATTCTCGTAACAATCTCCATTC-TTTT
* * * * * * * ** * *
1338399 --G--T--G-AT-TACGTAATATATTCTCGTCATTAGGATAAATGATATTGATGATTTTCTTTTG
65 AGGATTAGGAATCTAC-AAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* * * ***
1338456 CATAG-AAATCTTTTCTATGCCCT-ATTTTACT
129 CA-AGAAAAGCTTTTCTCT-CCATCATTTTTGA
* * * * * *
1338487 TAAAATCAAGGTTCA-CCCTTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCACTCTTTT
1 TAAAATCAAAGTTCATCCC-TTAAATAAGACAAACATTGATTCTCGTAACAATCTCCATTC-TTT
* * * *
1338551 TAGGATTGGGAACCTA-AAACACATTC-CCTTCATTAGGATACATGACATTAATGCTTTGGTGTT
64 TAGGATTAGGAATCTACAAACACATTCTCC-TCATTAGGATACATGACATTGATGCTTTGGTGTC
* * * *
1338614 GCAAGAAAAGCTTTTCTCTACACCACTTATGA
128 GCAAGAAAAGCTTTTCTCTCCATCATTTTTGA
* **
1338646 TAGAATCAAAGTTTGTCTCC-TAAATAAGACAAACA
1 TAAAATCAAAGTTCATC-CCTTAAATAAGACAAACA
1338681 AGTGTACACA
Statistics
Matches: 1997, Mismatches: 703, Indels: 344
0.66 0.23 0.11
Matches are distributed among these distances:
147 3 0.00
148 48 0.02
149 36 0.02
150 2 0.00
151 2 0.00
152 1 0.00
153 15 0.01
154 116 0.06
155 13 0.01
156 19 0.01
157 155 0.08
158 750 0.38
159 688 0.34
160 122 0.06
161 26 0.01
162 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (159 bp):
TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATTGATTCTCGTAACAATCTCCATTCTTTTA
GGATTAGGAATCTACAAACACATTCTCCTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
AGAAAAGCTTTTCTCTCCATCATTTTTGA
Found at i:1339745 original size:61 final size:62
Alignment explanation
Indices: 1339657--1339845 Score: 215
Period size: 61 Copynumber: 3.1 Consensus size: 62
1339647 AGCAAGACAT
* * *
1339657 CTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAGGAGCAAGATGCCTTT-TC
1 CTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCAATCCTCAAAGAGCAAGATG-CTTTCTC
* * * *
1339719 CTTTTAAAG-CCACACAAGTTGGTGGCAC-CTTCCAATTCTCAAAGAGCAGGATGCTTTCTC
1 CTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCAATCCTCAAAGAGCAAGATGCTTTCTC
* * * * * * *
1339779 CTTGCAAAGCCCACACAAGTTAGTGGCAC-TTCCCAATCCTCAAAGAGTAGGACGCTCTCTC
1 CTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCAATCCTCAAAGAGCAAGATGCTTTCTC
1339840 CTTTCA
1 CTTTCA
1339846 CCCTTTAGTC
Statistics
Matches: 108, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
59 4 0.04
60 28 0.26
61 68 0.63
62 8 0.07
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (62 bp):
CTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCAATCCTCAAAGAGCAAGATGCTTTCTC
Found at i:1339948 original size:62 final size:60
Alignment explanation
Indices: 1339847--1340092 Score: 273
Period size: 62 Copynumber: 4.0 Consensus size: 60
1339837 CTCCTTTCAC
* * * * *
1339847 CCTT-TAGTCTTCAAAGAGCAAAACACCCATTCCTTTTAAAAGCCCACACAAGTTGGTGGCA
1 CCTTCTAGTCCTCAAAGAGC-AGACGCCCTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCA
*
1339908 CCTTCTAGTCCTCAAAGAGCAGTACGCCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGAA
1 CCTTCTAGTCCTCAAAGAGCAG-ACGCCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
* * *
1339969 CTTTTCTAGTCCTCAAAGAGCAAGATGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
1 C-CTTCTAGTCCTCAAAGAGC-AGACGCCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * **
1340031 CCTTCCAGTCCACAAAGAGCAGGATG--CTTTCTCCTTGCAAAGCCCACACAAGTTGGTGGCA
1 CCTTCTAGTCCTCAAAGAGCA-GACGCCCTTT-T-CTTTTAAAGCCCACACAAGTTGGTGGCA
1340092 C
1 C
1340093 TTCCCAATCC
Statistics
Matches: 162, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
59 3 0.02
60 2 0.01
61 75 0.46
62 80 0.49
63 2 0.01
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (60 bp):
CCTTCTAGTCCTCAAAGAGCAGACGCCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:1340000 original size:61 final size:60
Alignment explanation
Indices: 1339879--1340092 Score: 279
Period size: 61 Copynumber: 3.5 Consensus size: 60
1339869 ACACCCATTC
*
1339879 CTTTTAAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGC-AGTACGCCCTTTT
1 CTTTT-AAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAAG-ATG-CCTTTT
* *
1339941 CTTTTAAAGCCCACACAAGTTGGTGGAACTTTTCTAGTCCTCAAAGAGCAAGATGCCTTTTT
1 CTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCTAGTCCTCAAAGAGCAAGATGCC-TTTT
* * *
1340003 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCACAAAGAGCAGGATG-CTTTCT
1 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAAGATGCCTTT-T
**
1340063 CCTTGCAAAGCCCACACAAGTTGGTGGCAC
1 -CTTTTAAAGCCCACACAAGTTGGTGGCAC
1340093 TTCCCAATCC
Statistics
Matches: 137, Mismatches: 10, Indels: 11
0.87 0.06 0.07
Matches are distributed among these distances:
59 3 0.02
60 2 0.01
61 73 0.53
62 57 0.42
63 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (60 bp):
CTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAAGATGCCTTTT
Found at i:1340066 original size:224 final size:216
Alignment explanation
Indices: 1339596--1340066 Score: 592
Period size: 224 Copynumber: 2.1 Consensus size: 216
1339586 TTTCACTTTT
* *
1339596 CAGTCCTCAAAAAGCAGGATGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAAGACATCTTT
1 CAGTCCTCAAAGAGCAGGATGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAACACATCTTT
* * * *
1339661 CAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAGGAGCAAGATGCCTTTTCCTTTTAA
66 AAAAGCCCACACAAGTTGGTGGCACTCTTCTAGTCCTCAAAGAGCAAGACGCCTTTTCCTTTTAA
* * *
1339726 AGCCACACAAGTTGGTGGCACCTTCCAATTCTCAAAGAGCAGGATGCTTTCTCCTTGCAAAGCCC
131 AGCCACACAAGTTGGTGGAACCTTCCAATCCTCAAAGAGCAAGATGCTTTCTCCTTGCAAAGCCC
1339791 ACACAAGTTAGTGGCACTTCC
196 ACACAAGTTAGTGGCACTTCC
* * * *
1339812 CAATCCTCAAAGAGTAGGACGCTCTCTCCTTTCACCCTTTAGTCTTCAAAGAGCAAAACACCCAT
1 CAGTCCTCAAAGAGCAGGATGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGC--AACA--CA-
1339877 TCCTTTTAAAAGCCCACACAAGTTGGTGGCAC-CTTCTAGTCCTCAAAGAGC-AGTACGCCCTTT
61 T-C-TTTAAAAGCCCACACAAGTTGGTGGCACTCTTCTAGTCCTCAAAGAGCAAG-ACG-CCTTT
* * * *
1339940 T-CTTTTAAAGCCCACACAAGTTGGTGGAACTTTTCTAGTCCTCAAAGAGCAAGATGCCTTT-TT
122 TCCTTTTAAAG-CCACACAAGTTGGTGGAAC-CTTCCAATCCTCAAAGAGCAAGATG-CTTTCTC
** *
1340003 CTTTTAAAGCCCACACAAGTTGGTGGCACCTT-C
184 CTTGCAAAGCCCACACAAGTTAGTGGCA-CTTCC
* *
1340036 CAGTCCACAAAGAGCAGGATGCTTTCTCCTT
1 CAGTCCTCAAAGAGCAGGATGCTCTCTCCTT
1340067 GCAAAGCCCA
Statistics
Matches: 217, Mismatches: 25, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
216 49 0.23
218 3 0.01
220 2 0.01
221 3 0.01
222 29 0.13
223 51 0.24
224 73 0.34
225 7 0.03
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (216 bp):
CAGTCCTCAAAGAGCAGGATGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAACACATCTTT
AAAAGCCCACACAAGTTGGTGGCACTCTTCTAGTCCTCAAAGAGCAAGACGCCTTTTCCTTTTAA
AGCCACACAAGTTGGTGGAACCTTCCAATCCTCAAAGAGCAAGATGCTTTCTCCTTGCAAAGCCC
ACACAAGTTAGTGGCACTTCC
Found at i:1340126 original size:61 final size:61
Alignment explanation
Indices: 1339885--1340127 Score: 186
Period size: 61 Copynumber: 4.0 Consensus size: 61
1339875 ATTCCTTTTA
* * * * * * **
1339885 AAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGTACGC-CCTTTTCTTTT
1 AAAGCCCACACAAGTTGGTGGCACCTTCCAATCCACAAAGAGCAGGACGCTCC-CTCCTTGC
* * * * * * * ** * **
1339946 AAAGCCCACACAAGTTGGTGGAACTTTTCTAGTCCTCAAAGAGCAAGATGC-CTTTTTCTTTT
1 AAAGCCCACACAAGTTGGTGGCAC-CTTCCAATCCACAAAGAGCAGGACGCTC-CCTCCTTGC
* * **
1340008 AAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCACAAAGAGCAGGATGCTTTCTCCTTGC
1 AAAGCCCACACAAGTTGGTGGCACCTTCCAATCCACAAAGAGCAGGACGCTCCCTCCTTGC
* * *
1340069 AAAGCCCACACAAGTTGGTGGCA-CTTCCCAATCCTCAACGAGTAGGACGCTCCCTCCTT
1 AAAGCCCACACAAGTTGGTGGCACCTT-CCAATCCACAAAGAGCAGGACGCTCCCTCCTT
1340128 TCACCCTGTA
Statistics
Matches: 155, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
60 3 0.02
61 98 0.63
62 54 0.35
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (61 bp):
AAAGCCCACACAAGTTGGTGGCACCTTCCAATCCACAAAGAGCAGGACGCTCCCTCCTTGC
Found at i:1340171 original size:285 final size:284
Alignment explanation
Indices: 1339656--1340377 Score: 1142
Period size: 285 Copynumber: 2.5 Consensus size: 284
1339646 GAGCAAGACA
* * *
1339656 TCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAGGAGCAAGATGCCTTTTCCT
1 TCTTTTAAAGCCCACACAAGTTGGTGGAACTTTTCTAGTCCTCAAAGAGCAAGATGCCTTTTCCT
* *
1339721 TTTAAAG-CCACACAAGTTGGTGGCACCTTCCAATTCTCAAAGAGCAGGATGCTTTCTCCTTGCA
66 TTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGATGCTTTCTCCTTGCA
* *
1339785 AAGCCCACACAAGTTAGTGGCACTTCCCAATCCTCAAAGAGTAGGACGCTCTCTCCTTTCACCCT
131 AAGCCCACACAAGTTGGTGGCACTTCCCAATCCTCAAAGAGTAGGACGCTCCCTCCTTTCACCCT
* *
1339850 TTAGTCTTCAAAGAGCAAAACACCCATTCCTTTTAAAAGCCCACACAAGTTGGTGGCACCTTCTA
196 GTAGTCTTCAAAGAGCAAAACACCCATTCCTTTTAAAAGCCCACACAAGTTGGTGACACCTTCTA
*
1339915 GTCCTCAAAGAGCAGTACGCCCTTT
261 GTCCTCAAAGAGCAGGACG-CCTTT
*
1339940 TCTTTTAAAGCCCACACAAGTTGGTGGAACTTTTCTAGTCCTCAAAGAGCAAGATGCCTTTTTCT
1 TCTTTTAAAGCCCACACAAGTTGGTGGAACTTTTCTAGTCCTCAAAGAGCAAGATGCCTTTTCCT
*
1340005 TTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCACAAAGAGCAGGATGCTTTCTCCTTGCA
66 TTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGATGCTTTCTCCTTGCA
*
1340070 AAGCCCACACAAGTTGGTGGCACTTCCCAATCCTCAACGAGTAGGACGCTCCCTCCTTTCACCCT
131 AAGCCCACACAAGTTGGTGGCACTTCCCAATCCTCAAAGAGTAGGACGCTCCCTCCTTTCACCCT
** ***** *
1340135 GTAGTCCTT-AAAGAGCAGGACGTTTTTTCCTTTTAAAAGCCCACACAAGTTGGTGACACGTTCT
196 GTAGT-CTTCAAAGAGCAAAACACCCATTCCTTTTAAAAGCCCACACAAGTTGGTGACACCTTCT
*
1340199 AGTCCTCAAAGAGCAGGATGCCTTT
260 AGTCCTCAAAGAGCAGGACGCCTTT
* * *
1340224 TCCTTTTAAAGCCCACACAAGTTGGTGGTACTTTTCTAGTCCCCAAAGAGCAGGATGCCTTTTCC
1 T-CTTTTAAAGCCCACACAAGTTGGTGGAACTTTTCTAGTCCTCAAAGAGCAAGATGCCTTTTCC
** *
1340289 TCGTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGATGCTTTCTCCTTGC
65 TTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGATGCTTTCTCCTTGC
*
1340354 AAAGCCCATACAAGTTGGTGGCAC
130 AAAGCCCACACAAGTTGGTGGCAC
1340378 CTGCTAGTCC
Statistics
Matches: 404, Mismatches: 31, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
284 74 0.18
285 327 0.81
286 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (284 bp):
TCTTTTAAAGCCCACACAAGTTGGTGGAACTTTTCTAGTCCTCAAAGAGCAAGATGCCTTTTCCT
TTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGATGCTTTCTCCTTGCA
AAGCCCACACAAGTTGGTGGCACTTCCCAATCCTCAAAGAGTAGGACGCTCCCTCCTTTCACCCT
GTAGTCTTCAAAGAGCAAAACACCCATTCCTTTTAAAAGCCCACACAAGTTGGTGACACCTTCTA
GTCCTCAAAGAGCAGGACGCCTTT
Found at i:1340358 original size:61 final size:61
Alignment explanation
Indices: 1340136--1340400 Score: 325
Period size: 61 Copynumber: 4.3 Consensus size: 61
1340126 TTTCACCCTG
* * ** * * *
1340136 TAGTCCTTAAAGAGCAGGACGTTTTTTCCTTTTAAAAGCCCACACAAGTTGGTGACACGTTC
1 TAGTCCTCAAAGAGCAGGATGCCTTTTCCTTGT-AAAGCCCACACAAGTTGGTGGCACCTTC
* * *
1340198 TAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGTACTTTTC
1 TAGTCCTCAAAGAGCAGGATGCCTTTTCCTTGTAAAGCCCACACAAGTTGGTGGCAC-CTTC
* *
1340260 TAGTCCCCAAAGAGCAGGATGCCTTTTCCTCGTAAAGCCCACACAAGTTGGTGGCACCTTC
1 TAGTCCTCAAAGAGCAGGATGCCTTTTCCTTGTAAAGCCCACACAAGTTGGTGGCACCTTC
* * * * *
1340321 CAGTCCTCAAAGAGTAGGATG-CTTTCTCCTTGCAAAGCCCATACAAGTTGGTGGCACCTGC
1 TAGTCCTCAAAGAGCAGGATGCCTTT-TCCTTGTAAAGCCCACACAAGTTGGTGGCACCTTC
* *
1340382 TAGTCCCCAAGGAGCAGGA
1 TAGTCCTCAAAGAGCAGGA
1340401 CCCATTTCAT
Statistics
Matches: 178, Mismatches: 23, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
60 4 0.02
61 89 0.50
62 85 0.48
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (61 bp):
TAGTCCTCAAAGAGCAGGATGCCTTTTCCTTGTAAAGCCCACACAAGTTGGTGGCACCTTC
Found at i:1340358 original size:123 final size:122
Alignment explanation
Indices: 1340170--1340400 Score: 338
Period size: 123 Copynumber: 1.9 Consensus size: 122
1340160 TTTCCTTTTA
* * **
1340170 AAAGCCCACACAAGTTGGTGACACGTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAG
1 AAAGCCCACACAAGTTGGTGACACCTTCCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTGCAAAG
* * *
1340235 CCCACACAAGTTGGTGGTACTTTTCTAGTCCCCAAAGAGCAGGATGCCTTTTCCTCGT
66 CCCACACAAGTTGGTGGCAC-CTGCTAGTCCCCAAAGAGCAGGATGCCTTTTCCTCGT
* *
1340293 AAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGATG-CTTTCTCCTTGCAAA
1 AAAGCCCACACAAGTTGGTGACACCTTCCAGTCCTCAAAGAGCAGGATGCCTTT-TCCTTGCAAA
* *
1340357 GCCCATACAAGTTGGTGGCACCTGCTAGTCCCCAAGGAGCAGGA
65 GCCCACACAAGTTGGTGGCACCTGCTAGTCCCCAAAGAGCAGGA
1340401 CCCATTTCAT
Statistics
Matches: 96, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
122 24 0.25
123 72 0.75
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (122 bp):
AAAGCCCACACAAGTTGGTGACACCTTCCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTGCAAAG
CCCACACAAGTTGGTGGCACCTGCTAGTCCCCAAAGAGCAGGATGCCTTTTCCTCGT
Found at i:1341109 original size:50 final size:49
Alignment explanation
Indices: 1341034--1341165 Score: 183
Period size: 49 Copynumber: 2.7 Consensus size: 49
1341024 TCACAATTTG
* * *
1341034 TATCGAAACATTGTTCACTGTATCGATACATTCTGGGTCTTACGCAGATA
1 TATCGATACATTGTTCAATGTATCGATACATTCTGGGT-TTACCCAGATA
* *
1341084 TATCGATACATTGTTCATTGTATCGATACATTCTGGGTTTACCCAGATG
1 TATCGATACATTGTTCAATGTATCGATACATTCTGGGTTTACCCAGATA
* * *
1341133 TATCAATACATTTTTCAATGTATCAATACATTC
1 TATCGATACATTGTTCAATGTATCGATACATTC
1341166 AGGCATTTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
49 38 0.51
50 36 0.49
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (49 bp):
TATCGATACATTGTTCAATGTATCGATACATTCTGGGTTTACCCAGATA
Found at i:1343567 original size:79 final size:81
Alignment explanation
Indices: 1343431--1343615 Score: 239
Period size: 79 Copynumber: 2.3 Consensus size: 81
1343421 ATTTTTCATC
** *
1343431 TCGGGGATACTCCAACTCCAATTATTTCACAATCGGGGATACTCCAACCCCAGTTTTATTTCCAA
1 TCGGGGATACTCCAAC-CCCGTTATTTCACAA-CGGGGATACTCCAACCCCAATTTTATTTCCAA
*
1343496 AACACCGATTTTTCACAA
64 AACACCAATTTTTCACAA
* *
1343514 TCGGGGATACTCCAACCCCGTTATTT-TCAA-GGGGATACTCCAACCCCAATTTTATTTCCAGAA
1 TCGGGGATACTCCAACCCCGTTATTTCACAACGGGGATACTCCAACCCCAATTTTATTTCCAAAA
* *
1343577 CACCAATTTTTCATAG
66 CACCAATTTTTCACAA
* *
1343593 TCAGGGGATACTTCAGCCCCGTT
1 TC-GGGGATACTCCAACCCCGTT
1343616 GTCATCCCTA
Statistics
Matches: 91, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
79 46 0.51
80 18 0.20
81 3 0.03
82 8 0.09
83 16 0.18
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.29
Consensus pattern (81 bp):
TCGGGGATACTCCAACCCCGTTATTTCACAACGGGGATACTCCAACCCCAATTTTATTTCCAAAA
CACCAATTTTTCACAA
Done.