Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1904
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 385494
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
File 1 of 2
Found at i:1460 original size:21 final size:21
Alignment explanation
Indices: 1427--1471 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1417 TTGCAAGTTG
*
1427 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1449 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
1469 AAA
1 AAA
1472 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:3274 original size:15 final size:15
Alignment explanation
Indices: 3254--3284 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3244 TAAAAATGTC
*
3254 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
3269 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
3284 C
1 C
3285 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:5385 original size:13 final size:13
Alignment explanation
Indices: 5367--5405 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
5357 ACATTTTTCT
5367 TTGTATCGATACA
1 TTGTATCGATACA
5380 TTGTATCGATACA
1 TTGTATCGATACA
5393 TTGTATCGATACA
1 TTGTATCGATACA
5406 GGGTGATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:7978 original size:13 final size:13
Alignment explanation
Indices: 7960--7985 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7950 TACAGCAAGT
7960 ATGTATCGATACA
1 ATGTATCGATACA
7973 ATGTATCGATACA
1 ATGTATCGATACA
7986 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:11027 original size:4 final size:4
Alignment explanation
Indices: 11020--11062 Score: 50
Period size: 4 Copynumber: 10.5 Consensus size: 4
11010 AAAAAAAAAG
* * *
11020 AACA AACA AACA AAAA AACAA AAAA AACA AACA AAAA AACA AA
1 AACA AACA AACA AACA AAC-A AACA AACA AACA AACA AACA AA
11063 AGCAAAAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
4 29 0.91
5 3 0.09
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (4 bp):
AACA
Found at i:11032 original size:21 final size:21
Alignment explanation
Indices: 11008--11063 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
10998 GGCGTCCTCC
*
11008 ACAAAAAAA-AAGAACAAACAA
1 ACAAAAAAACAA-AAAAAACAA
11029 ACAAAAAAACAAAAAAAACAA
1 ACAAAAAAACAAAAAAAACAA
11050 ACAAAAAAACAAAA
1 ACAAAAAAACAAAA
11064 GCAAAAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
21 31 0.94
22 2 0.06
ACGTcount: A:0.84, C:0.14, G:0.02, T:0.00
Consensus pattern (21 bp):
ACAAAAAAACAAAAAAAACAA
Found at i:11040 original size:29 final size:27
Alignment explanation
Indices: 11008--11075 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 27
10998 GGCGTCCTCC
11008 ACAAAAAAAAAGAACAAACAAACAAAAAA
1 ACAAAAAAAAAGAACAAA-AAA-AAAAAA
*
11037 ACAAAAAAAACA-AACAAAAAAACAAAA
1 ACAAAAAAAA-AGAACAAAAAAAAAAAA
*
11064 GCAAAAAAAAAG
1 ACAAAAAAAAAG
11076 GGGTCCGGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
26 1 0.03
27 14 0.40
28 3 0.09
29 16 0.46
30 1 0.03
ACGTcount: A:0.82, C:0.13, G:0.04, T:0.00
Consensus pattern (27 bp):
ACAAAAAAAAAGAACAAAAAAAAAAAA
Found at i:12558 original size:28 final size:28
Alignment explanation
Indices: 12507--12639 Score: 160
Period size: 28 Copynumber: 4.7 Consensus size: 28
12497 CATTCCTCAC
*
12507 CCTTCAAAAGCCCACAAGTTAGTGGCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCAA
*** * *
12535 CCTTCAAAAGCTTGCAGGTCAGTGGCAT
1 CCTTCAAAAGCCCACAAGTCAGTGGCAA
* *
12563 CTTTTTC-AAAGCCCACAAGTTAGTGGCAA
1 C--CTTCAAAAGCCCACAAGTCAGTGGCAA
12592 CCTTCAAAAGCCCACAAGTCAGTGGCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCAA
*
12620 CCTTTAAAAGCCCACAAGTC
1 CCTTCAAAAGCCCACAAGTC
12640 CATGGTATCT
Statistics
Matches: 86, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
27 3 0.03
28 63 0.73
29 17 0.20
30 3 0.03
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (28 bp):
CCTTCAAAAGCCCACAAGTCAGTGGCAA
Found at i:12598 original size:57 final size:56
Alignment explanation
Indices: 12507--12638 Score: 183
Period size: 57 Copynumber: 2.3 Consensus size: 56
12497 CATTCCTCAC
* *** * *
12507 CCTTCAAAAGCCCACAAGTTAGTGGCAACCTTCAAAAGCTTGCAGGTCAGTGGCAT
1 CCTTTAAAAGCCCACAAGTTAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCAA
* *
12563 CTTTTTCAAAGCCCACAAGTTAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCAA
1 C-CTTTAAAAGCCCACAAGTTAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCAA
12620 CCTTTAAAAGCCCACAAGT
1 CCTTTAAAAGCCCACAAGT
12639 CCATGGTATC
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
56 17 0.26
57 48 0.74
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (56 bp):
CCTTTAAAAGCCCACAAGTTAGTGGCAACCTTCAAAAGCCCACAAGTCAGTGGCAA
Found at i:12687 original size:27 final size:27
Alignment explanation
Indices: 12654--12875 Score: 120
Period size: 27 Copynumber: 7.2 Consensus size: 27
12644 GTATCTTTTT
12654 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
12681 CCTTTTAACTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
12708 CTTTTTTCTTTTCAAAGGCCACAACTCCGTGGCACAC
1 C------CTTTT--AAGTCCACAACTCCGTGG--CAC
* *
12745 TTTTCCTTTTAAGCCCACAACTCTGTGGCAC
1 ----CCTTTTAAGTCCACAACTCCGTGGCAC
*
12776 TTTTTTTTCCTTTTAAGTCCATAACTCCGTGGCAC
1 --------CCTTTTAAGTCCACAACTCCGTGGCAC
*
12811 CCTTTTAAGTCCACAACTTCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
** *
12838 CTTTTCTTTTTAAGTCCATGACTCTGTGGCAC
1 C----C-TTTTAAGTCCACAACTCCGTGGCAC
12870 CCTTTT
1 CCTTTT
12876 CCCTTTTAAG
Statistics
Matches: 158, Mismatches: 14, Indels: 46
0.72 0.06 0.21
Matches are distributed among these distances:
27 57 0.36
28 1 0.01
31 4 0.03
32 22 0.14
33 21 0.13
35 49 0.31
37 3 0.02
41 1 0.01
ACGTcount: A:0.19, C:0.32, G:0.13, T:0.36
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:12730 original size:35 final size:34
Alignment explanation
Indices: 12682--12911 Score: 160
Period size: 35 Copynumber: 7.0 Consensus size: 34
12672 CCGTGGCACC
12682 CTTTTAA-CTCCACAACTCCGTGGCAC-CTTTTTT
1 CTTTTAAGC-CCACAACTCCGTGGCACACTTTTTT
* *
12715 CTTTTCAAAGGCCACAACTCCGTGGCACAC-TTTTC
1 CTTTT--AAGCCCACAACTCCGTGGCACACTTTTTT
* **
12750 CTTTTAAGCCCACAACTCTGTGGCACTTTTTTTT
1 CTTTTAAGCCCACAACTCCGTGGCACACTTTTTT
* *
12784 CCTTTTAAGTCCATAACTCCGTGGCAC-C------
1 -CTTTTAAGCCCACAACTCCGTGGCACACTTTTTT
* * *
12812 CTTTTAAGTCCACAACTTCGTGGCAC-CTTTTCT
1 CTTTTAAGCCCACAACTCCGTGGCACACTTTTTT
* ** * * **
12845 -TTTTAAGTCCATGACTCTGTGGCACCCTTTTCC
1 CTTTTAAGCCCACAACTCCGTGGCACACTTTTTT
* *
12878 CTTTTAAGCCCACACCTCCGTGGCATCCCTTTTT
1 CTTTTAAGCCCACAACTCCGTGGCA-CACTTTTT
12912 CCTGTAAGCC
Statistics
Matches: 158, Mismatches: 24, Indels: 28
0.75 0.11 0.13
Matches are distributed among these distances:
27 25 0.16
32 21 0.13
33 30 0.19
34 23 0.15
35 58 0.37
36 1 0.01
ACGTcount: A:0.18, C:0.33, G:0.13, T:0.37
Consensus pattern (34 bp):
CTTTTAAGCCCACAACTCCGTGGCACACTTTTTT
Found at i:12763 original size:68 final size:66
Alignment explanation
Indices: 12627--12926 Score: 250
Period size: 68 Copynumber: 4.7 Consensus size: 66
12617 CAACCTTTAA
* * * * * *
12627 AAGCCCACAAGTCCATGGTATCTTTTTCCTTTTAAGTCCACAACTCCGTGG--CAC----CCTTT
1 AAGCCCACAACTCCGTGGCACCTTTTTTCTTTTAAGTCCATAACTCCGTGGCACACTTTTCCTTT
12686 T
66 T
* *
12687 AA-CTCCACAACTCCGTGGCACCTTTTTTCTTTTCAAAGGCCACAACTCCGTGGCACACTTTTCC
1 AAGC-CCACAACTCCGTGGCACCTTTTTTCTTTT--AAGTCCATAACTCCGTGGCACACTTTTCC
12751 TTTT
63 TTTT
* *
12755 AAGCCCACAACTCTGTGGCACTTTTTTTTCCTTTTAAGTCCATAACTCCGTGG--CAC----CCT
1 AAGCCCACAACTCCGTGGCAC-CTTTTTT-CTTTTAAGTCCATAACTCCGTGGCACACTTTTCCT
12814 TTT
64 TTT
* * * * * *
12817 AAGTCCACAACTTCGTGGCACCTTTTCT-TTTTAAGTCCATGACTCTGTGGCACCCTTTTCCCTT
1 AAGCCCACAACTCCGTGGCACCTTTTTTCTTTTAAGTCCATAACTCCGTGGCACACTTTT-CCTT
12881 TT
65 TT
* * * * *
12883 AAGCCCACACCTCCGTGGCATCCCTTTTTCCTGTAAGCCCATAA
1 AAGCCCACAACTCCGTGGCA-CCTTTTTTCTTTTAAGTCCATAA
12927 GTTGATGGCA
Statistics
Matches: 192, Mismatches: 27, Indels: 34
0.76 0.11 0.13
Matches are distributed among these distances:
59 21 0.11
60 26 0.14
61 7 0.04
62 41 0.21
64 3 0.02
66 26 0.14
67 6 0.03
68 50 0.26
69 7 0.04
70 5 0.03
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.34
Consensus pattern (66 bp):
AAGCCCACAACTCCGTGGCACCTTTTTTCTTTTAAGTCCATAACTCCGTGGCACACTTTTCCTTT
T
Found at i:12867 original size:94 final size:95
Alignment explanation
Indices: 12726--12910 Score: 248
Period size: 94 Copynumber: 2.0 Consensus size: 95
12716 TTTTCAAAGG
** *
12726 CCACAACTCCGTGGCACACTTTTCCTTTTAAGCCCACAACTCTGTGGCACTTTTTTTTCCTTTTA
1 CCACAACTCCGTGGCACACTTTTCCTTTTAAGCCCACAACTCTGTGGCAC-CCTTTTCCCTTTTA
* *
12791 AGTCCATAACTCCGTGGCA-CCCTTTTAAGT
65 AGCCCACAACTCCGTGGCATCCCTTTTAAGT
* * * **
12821 CCACAACTTCGTGGCAC-CTTTTCTTTTTAAGTCCATGACTCTGTGGCACCCTTTTCCCTTTTAA
1 CCACAACTCCGTGGCACACTTTTCCTTTTAAGCCCACAACTCTGTGGCACCCTTTTCCCTTTTAA
*
12885 GCCCACACCTCCGTGGCATCCCTTTT
66 GCCCACAACTCCGTGGCATCCCTTTT
12911 TCCTGTAAGC
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
93 27 0.35
94 35 0.45
95 16 0.21
ACGTcount: A:0.18, C:0.34, G:0.13, T:0.36
Consensus pattern (95 bp):
CCACAACTCCGTGGCACACTTTTCCTTTTAAGCCCACAACTCTGTGGCACCCTTTTCCCTTTTAA
GCCCACAACTCCGTGGCATCCCTTTTAAGT
Found at i:12911 original size:130 final size:129
Alignment explanation
Indices: 12649--12911 Score: 368
Period size: 130 Copynumber: 2.0 Consensus size: 129
12639 CCATGGTATC
12649 TTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAACTCCACAACTCCGTGGCACCTTTTT
1 TTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAACTCCACAACTCCGTGGCACC-TTTT
* *
12714 TCTTTTCAAAGGCCACAACTCCGTGGCACACTTTTCCTTTTAAGCCCACAACTCTGTGGCACTTT
65 TCTTTTCAAAGGCCACAACTCCGTGGCACACTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTT
* * *
12779 TTTTTCCTTTTAAGTCCATAACTCCGTGGCACCCTTTTAAGTCCACAACTTCGTGGCACC-TTTT
1 TTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAACTCCACAACTCCGTGGCACCTTTTT
* * ** * * * *
12843 CTTTT-TAAGTCCATGACTCTGTGGCACCCTTTTCCCTTTTAAGCCCACACCTCCGTGGCATCCC
66 CTTTTCAAAGGCCACAACTCCGTGGCACACTTTT-CCTTTTAAGCCCACAACTCCGTGGCA-CCT
12907 T
129 T
12908 TTTT
1 TTTT
12912 CCTGTAAGCC
Statistics
Matches: 118, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
127 22 0.19
128 33 0.28
129 6 0.05
130 57 0.48
ACGTcount: A:0.18, C:0.33, G:0.13, T:0.37
Consensus pattern (129 bp):
TTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAACTCCACAACTCCGTGGCACCTTTTT
CTTTTCAAAGGCCACAACTCCGTGGCACACTTTTCCTTTTAAGCCCACAACTCCGTGGCACCTT
Found at i:12993 original size:27 final size:30
Alignment explanation
Indices: 12925--13023 Score: 95
Period size: 29 Copynumber: 3.4 Consensus size: 30
12915 GTAAGCCCAT
*
12925 AAGTTGA-TGGCACCCCTTTCAAAAGC-CAC
1 AAGTTGAGTGGCA-ACCTTTCAAAAGCACAC
12954 AAGTT-AGTGGCAA-CTTTCAAAAGCACAC
1 AAGTTGAGTGGCAACCTTTCAAAAGCACAC
*
12982 AAGTTGA-T-GCAACCCCTTCAAAAGCCCACAC
1 AAGTTGAGTGGCAA-CCTTTCAAAAG--CACAC
13013 AAGTTG-GTGGC
1 AAGTTGAGTGGC
13024 GTCTTCTTCT
Statistics
Matches: 59, Mismatches: 2, Indels: 15
0.78 0.03 0.20
Matches are distributed among these distances:
27 15 0.25
28 10 0.17
29 20 0.34
31 12 0.20
32 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.20
Consensus pattern (30 bp):
AAGTTGAGTGGCAACCTTTCAAAAGCACAC
Found at i:13011 original size:29 final size:30
Alignment explanation
Indices: 12917--13011 Score: 103
Period size: 29 Copynumber: 3.3 Consensus size: 30
12907 TTTTTCCTGT
*
12917 AAGCCCATAAGTTGATGGC-ACCCCTTTCAA
1 AAGCCCACAAGTTGATGGCAACCCC-TTCAA
*
12947 AAG-CCACAAGTT-AGTGGCAA--CTTTCAA
1 AAGCCCACAAGTTGA-TGGCAACCCCTTCAA
*
12974 AAGCACACAAGTTGAT-GCAACCCCTTCAA
1 AAGCCCACAAGTTGATGGCAACCCCTTCAA
13003 AAGCCCACA
1 AAGCCCACA
13012 CAAGTTGGTG
Statistics
Matches: 54, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
27 12 0.22
28 11 0.20
29 27 0.50
30 4 0.07
ACGTcount: A:0.36, C:0.29, G:0.16, T:0.19
Consensus pattern (30 bp):
AAGCCCACAAGTTGATGGCAACCCCTTCAA
Found at i:13110 original size:49 final size:49
Alignment explanation
Indices: 13033--13530 Score: 333
Period size: 49 Copynumber: 10.5 Consensus size: 49
13023 CGTCTTCTTC
* * * *
13033 TAAGTCCAATATCGTTGACCTTGAATCAGCATATTGGCACCTTTAACTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACTT
* * *
13082 TAAGACCAATGTCACTGGCCTTGAATCAGTACATTGG---C----AC--
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACTT
* *
13122 -AAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGT--CTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTT-TAACTT
* *
13169 TAAGACCAATTTCGCTGGCCTTGAATCAGCATATT-G------TCAC--
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACTT
* * * *
13209 -AAGCCCAATATCGCTGGCCTTGAATCAGCATA-TGGCCACCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGG-CACCTTTAACTT
* * * *
13257 TAAGACCGATGTCGTTGACCTTGAATCAGCACATTGGCACC-TTAACCATTTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAA-C---TT
* * * * * *
13309 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGCCATCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACTT
* ** * * * *
13358 TAAGTCCGGTATCGTTGGCCTTGAATCAGCATATTGGCACCGTTATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACTT
* * * *
13407 TAAGATCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACTT
* * ** * * ** *
13456 TGAGTCTGATATCGTTGGCCTTGAATCAGCATATTGGCTTCTTTAGCATT
1 TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAC-TT
*
13506 CCTAAGCCCAATGTCGCTGGCCTTG
1 --TAAGACCAATGTCGCTGGCCTTG
13531 TCCAGTACAT
Statistics
Matches: 346, Mismatches: 71, Indels: 61
0.72 0.15 0.13
Matches are distributed among these distances:
38 1 0.00
39 62 0.18
40 1 0.00
42 4 0.01
45 1 0.00
46 2 0.01
47 1 0.00
48 34 0.10
49 178 0.51
50 5 0.01
52 55 0.16
53 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (49 bp):
TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACTT
Found at i:13141 original size:39 final size:39
Alignment explanation
Indices: 13087--13241 Score: 166
Period size: 39 Copynumber: 3.7 Consensus size: 39
13077 AACTTTAAGA
* * * *
13087 CCAATGTCACTGGCCTTGAATCAGTACATTGGCACAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
*
13126 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCA------C---AAGC
* *
13174 CCAATTTCGCTGGCCTTGAATCAGCATATTGTCACAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
13213 CCAATATCGCTGGCCTTGAATCAGCATAT
1 CCAATATCGCTGGCCTTGAATCAGCATAT
13242 GGCCACCTTC
Statistics
Matches: 98, Mismatches: 9, Indels: 18
0.78 0.07 0.14
Matches are distributed among these distances:
39 61 0.62
42 1 0.01
45 1 0.01
48 35 0.36
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (39 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
Found at i:13211 original size:87 final size:86
Alignment explanation
Indices: 13038--13296 Score: 367
Period size: 87 Copynumber: 3.0 Consensus size: 86
13028 TCTTCTAAGT
* * *
13038 CCAATATCGTTGACCTTGAATCAGCATATTGGCACCTTTAACTTTAAGACCAATGTCACTGGCCT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT--CTTTAAGACCAATGTCGCTGGCCT
*
13103 TGAATCAGTACATTGGCACAAGC
64 TGAATCAGCACATTGGCACAAGC
*
13126 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATTTCGCTGGCCTT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TCTTTAAGACCAATGTCGCTGGCCTT
* *
13191 GAATCAGCATATTGTCACAAGC
65 GAATCAGCACATTGGCACAAGC
* * *
13213 CCAATATCGCTGGCCTTGAATCAGCATA-TGGCCACCTTCATCTTTAAGACCGATGTCGTTGACC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGG-CACCTT--TCTTTAAGACCAATGTCGCTGGCC
13277 TTGAATCAGCACATTGGCAC
63 TTGAATCAGCACATTGGCAC
13297 CTTAACCATT
Statistics
Matches: 154, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
86 3 0.02
87 76 0.49
88 74 0.48
89 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (86 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTCTTTAAGACCAATGTCGCTGGCCTTG
AATCAGCACATTGGCACAAGC
Found at i:13388 original size:101 final size:99
Alignment explanation
Indices: 13213--13530 Score: 399
Period size: 101 Copynumber: 3.2 Consensus size: 99
13203 TGTCACAAGC
* * * * * *
13213 CCAATATCGCTGGCCTTGAATCAGCATATGGCCACCTTCATCTTTAAGACCGATGTCGTTGACCT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGCCACCTTCATCTTTAAGTCCGATATCGTTGGCCT
*
13278 TGAATCAGCACATTGGCACCTTAACCATTTTTAAGT
66 TGAATCAGCATATTGGCACCTT-A-CATTTTTAAGT
* *
13314 CCAATGTCGCTGGCCTTGAATCAGCACATTGCCATCTTCATCTTTAAGTCCGGTATCGTTGGCCT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGCCACCTTCATCTTTAAGTCCGATATCGTTGGCCT
*
13379 TGAATCAGCATATTGGCACCGTT--ATCTTTAAGAT
66 TGAATCAGCATATTGGCACC-TTACATTTTTAAG-T
* * *
13413 -CAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTGAGTCTGATATCGTTGGCCT
1 CCAATGTCGCTGGCCTTGAATCAGCACATTGCCACCTTCATCTTTAAGTCCGATATCGTTGGCCT
* * ** *
13477 TGAATCAGCATATTGGCTTCTTTAGCATTCCTAAGC
66 TGAATCAGCATATTGGC-ACCTTA-CATTTTTAAGT
13513 CCAATGTCGCTGGCCTTG
1 CCAATGTCGCTGGCCTTG
13531 TCCAGTACAT
Statistics
Matches: 189, Mismatches: 21, Indels: 14
0.84 0.09 0.06
Matches are distributed among these distances:
98 86 0.46
99 2 0.01
101 99 0.52
102 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.32
Consensus pattern (99 bp):
CCAATGTCGCTGGCCTTGAATCAGCACATTGCCACCTTCATCTTTAAGTCCGATATCGTTGGCCT
TGAATCAGCATATTGGCACCTTACATTTTTAAGT
Found at i:16610 original size:20 final size:21
Alignment explanation
Indices: 16565--16621 Score: 73
Period size: 20 Copynumber: 2.8 Consensus size: 21
16555 CTACCAAGGA
16565 AATGTATCGATACATT-ATTC
1 AATGTATCGATACATTGATTC
16585 AATGTATCGATACATTGA-TC
1 AATGTATCGATACATTGATTC
** *
16605 TTTGTATTGATACATTG
1 AATGTATCGATACATTG
16622 GGGAATTTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 32 0.97
21 1 0.03
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (21 bp):
AATGTATCGATACATTGATTC
Found at i:19343 original size:13 final size:13
Alignment explanation
Indices: 19325--19349 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19315 ACACACTTTG
19325 TGTATCGATACAT
1 TGTATCGATACAT
19338 TGTATCGATACA
1 TGTATCGATACA
19350 CGTTTAAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:19466 original size:137 final size:135
Alignment explanation
Indices: 19214--19507 Score: 453
Period size: 137 Copynumber: 2.1 Consensus size: 135
19204 TGGTCAAAAC
*
19214 CCTTAAAAGTATCGATACACAATTCAAAGTATCGATACATGAAAAAGATGTATCGATACATGTCA
1 CCTTAAAAGTATCGATACA-TATTCAAAGTATCGATACATGAAAAAGATGTATCGATACATGTCA
* *** *
19279 TTGGGATTTCTTGGCAGTAGCTAAACTTGTATCGATACACACTTTGTGTATCGATACATTGTATC
65 TTGGGATTTCTTGGCAGTAGCCAAACTTGTATCGATACACAAAGTATGTATCGATACATTGTATC
19344 GATACA
130 GATACA
* ** *
19350 CGTTTAAAAGTATCGATACATATTGCATTGTATCGATATATGAAAAAGATGTATCGATACATGTC
1 C-CTTAAAAGTATCGATACATATT-CAAAGTATCGATACATGAAAAAGATGTATCGATACATGTC
19415 ATTGGGATTTCTTGGCAGTAGCCAAACTTGTATCGATACACAAAGTATGTATCGATACATTGTAT
64 ATTGGGATTTCTTGGCAGTAGCCAAACTTGTATCGATACACAAAGTATGTATCGATACATTGTAT
19480 CGATACA
129 CGATACA
*
19487 CCATAAAATGTATCGATACAT
1 CCTTAAAA-GTATCGATACAT
19508 TGGCTTGCAA
Statistics
Matches: 143, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
136 9 0.06
137 134 0.94
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (135 bp):
CCTTAAAAGTATCGATACATATTCAAAGTATCGATACATGAAAAAGATGTATCGATACATGTCAT
TGGGATTTCTTGGCAGTAGCCAAACTTGTATCGATACACAAAGTATGTATCGATACATTGTATCG
ATACA
Found at i:19480 original size:13 final size:13
Alignment explanation
Indices: 19462--19486 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19452 ACACAAAGTA
19462 TGTATCGATACAT
1 TGTATCGATACAT
19475 TGTATCGATACA
1 TGTATCGATACA
19487 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:19483 original size:32 final size:33
Alignment explanation
Indices: 19442--19509 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
19432 GTAGCCAAAC
*
19442 TTGTATCGATACA-CA-AAGTATGTATCGATACA
1 TTGTATCGATACACCATAA-AATGTATCGATACA
19474 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCATAAAATGTATCGATACA
19507 TTG
1 TTG
19510 GCTTGCAACG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 13 0.39
33 18 0.55
34 2 0.06
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACCATAAAATGTATCGATACA
Found at i:20195 original size:16 final size:16
Alignment explanation
Indices: 20162--20191 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
20152 CCTAAACTCC
20162 TTTTCGTTTCGAATTG
1 TTTTCGTTTCGAATTG
20178 TTTT-GTTTCGAATT
1 TTTTCGTTTCGAATT
20192 TGTTCAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.13, C:0.10, G:0.17, T:0.60
Consensus pattern (16 bp):
TTTTCGTTTCGAATTG
Found at i:21032 original size:20 final size:18
Alignment explanation
Indices: 20991--21046 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
20981 TAAAACAAAC
*
20991 AATTTCTCCCCCTTATTCA
1 AATTTCTTCCCCTT-TTCA
21010 AATTTCTTCCCCTTTTCTAA
1 AATTTCTTCCCCTTTTC--A
*
21030 AATATCTCTCCCCTTTT
1 AATTTCT-TCCCCTTTT
21047 TTTTGTTTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 3 0.09
19 13 0.41
20 7 0.22
21 9 0.28
ACGTcount: A:0.20, C:0.34, G:0.00, T:0.46
Consensus pattern (18 bp):
AATTTCTTCCCCTTTTCA
Found at i:21090 original size:92 final size:90
Alignment explanation
Indices: 20919--21115 Score: 295
Period size: 92 Copynumber: 2.2 Consensus size: 90
20909 CGACAATAAA
* * *
20919 AAATTTCTTCCTCTTTTCTAAAATATCTTTTCCCTTTTTTGTGTCCAAAATAATCTCTTTTATAA
1 AAATTTCTTCCCCTTTTCTAAAATATCTCTCCCCTTTTTTGTGTCCAAAATAATCTCTTTTATAA
20984 AACAAACAATTTCTCCCCCTTATTC
66 AACAAACAATTTCTCCCCCTTATTC
* *
21009 AAATTTCTTCCCCTTTTCTAAAATATCTCTCCCCTTTTTTTTGTTTCTAAAATAATCTCTTTTAT
1 AAATTTCTTCCCCTTTTCTAAAATATCTCTCCCC--TTTTTTGTGTCCAAAATAATCTCTTTTAT
* * *
21074 AAAGCAAATAATTTCTCCCTCTTATTC
64 AAAACAAACAATTTCTCCCCCTTATTC
*
21101 AAATTTCTCCCCCTT
1 AAATTTCTTCCCCTT
21116 ATAATTTATT
Statistics
Matches: 96, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
90 31 0.32
92 65 0.68
ACGTcount: A:0.26, C:0.25, G:0.02, T:0.46
Consensus pattern (90 bp):
AAATTTCTTCCCCTTTTCTAAAATATCTCTCCCCTTTTTTGTGTCCAAAATAATCTCTTTTATAA
AACAAACAATTTCTCCCCCTTATTC
Found at i:27466 original size:52 final size:52
Alignment explanation
Indices: 27388--27514 Score: 209
Period size: 52 Copynumber: 2.4 Consensus size: 52
27378 TGAAATATGA
* * *
27388 AAATTTGCCTGCATGTATCGATACATTTCATGGTGTATCAATACATTTGGGC
1 AAATTTACCTGCATGTATCGATACATTTCATAGTGTATCAATACATCTGGGC
* *
27440 AAATTTACCTGTATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTACCTGCATGTATCGATACATTTCATAGTGTATCAATACATCTGGGC
27492 AAATTTACCTGCATGTATCGATA
1 AAATTTACCTGCATGTATCGATA
27515 GAATGTATCG
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (52 bp):
AAATTTACCTGCATGTATCGATACATTTCATAGTGTATCAATACATCTGGGC
Found at i:27606 original size:19 final size:19
Alignment explanation
Indices: 27582--27646 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 19
27572 AGCGATATAT
27582 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
27601 TGTATCGATAC---A-TTA
1 TGTATCGATACAAAACTTA
*
27616 --TATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
*
27633 TGTATCGAGACAAA
1 TGTATCGATACAAA
27647 CCGTTGAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
13 9 0.24
15 3 0.08
16 2 0.05
17 3 0.08
19 21 0.55
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:27620 original size:32 final size:32
Alignment explanation
Indices: 27574--27640 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
27564 AGCTTCGTAG
* *
27574 CGATATATTGTATCGATACAAAACTTATGTAT
1 CGATACATTATATCGATACAAAACTTATGTAT
*
27606 CGATACATTATATCGATACAACACTTATGTAT
1 CGATACATTATATCGATACAAAACTTATGTAT
27638 CGA
1 CGA
27641 GACAAACCGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.34
Consensus pattern (32 bp):
CGATACATTATATCGATACAAAACTTATGTAT
Found at i:30062 original size:13 final size:13
Alignment explanation
Indices: 30044--30080 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
30034 ATAGTGTCGT
30044 TGTATCGATACAA
1 TGTATCGATACAA
*
30057 TGTATCGATACAG
1 TGTATCGATACAA
30070 TGTATCGATAC
1 TGTATCGATAC
30081 TAAGATCCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:33687 original size:673 final size:672
Alignment explanation
Indices: 31392--38777 Score: 13352
Period size: 673 Copynumber: 11.0 Consensus size: 672
31382 GGATTCAATA
31392 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
*
31457 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATT-AAAACTTTGAAAGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACATTGAAAGTC
31521 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
* * *
31586 TTTGAAAAATAGAGGATTTTTAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTTATAAAAC
196 TTTG-GAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAAC
* * *
31651 CATTTAAAATGCACATTTGGCATCCATTAGATATAATTTGAAATCATAAAAGCAAGCAAAGGCTA
260 CATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCATAAAAGCAAGCAAAGGCTA
31716 GTAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCC
325 GTAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCC
*
31781 TCTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCCAA
390 TCTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAA
*
31846 TTTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCCTTTTACTAAATACC
455 TTTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACC
31911 ATACCTTACTTCTCTCAAATTGATTTAATTTTTCTTGTATAGCCATAATCCAATTTTCATCTTGT
520 ATACCTTACTTCTCTCAAATTGATTTAA-TTTTCTTGTATAGCCATAATCCAATTTTCATCTTGT
31976 ACGGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCT
584 ACGGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCT
* *
32041 AAGACAAGAGCTAAAGCCTGTTTT
649 AAGAGAAGACCTAAAGCCTGTTTT
32065 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
*
32130 AAAGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACATTGAAAGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACATTGAAAGTC
* * *
32195 TATCATACTAAGCTTGAGGAGCTTGTTTTATACCATACAAGGCCTTTAAAAGTTTAAAAACTTGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
32260 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAACC
196 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAACC
*
32325 ATTTAAAATGCACATTTGACATCCATTTGATATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
261 ATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
* * * *
32390 TAGAATCCTTATGGCTTCTAACCTAGCTACGGGAGCCTAGGTTTAGTCATAGTCAATAACTTCCT
326 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
32455 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
391 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
*
32520 TTATTTCTAAACACCCATGTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
456 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
* * *
32585 TACCTTACTTCTCTCAAAATGATTTAA--TTCTTGCATAGCCATAATCCAATTTTCATCTTTTAC
521 TACCTTACTTCTCTCAAATTGATTTAATTTTCTTGTATAGCCATAATCCAATTTTCATCTTGTAC
* * * * *
32648 GGCTTTATCAATACTTTTAGGCTCCACTTAAGAGAGAAAAGCTACACAGTCGAAAGTTTTTCTAA
586 GGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTAA
32713 GAGAAGACCTAAAGCCTGTTTT
651 GAGAAGACCTAAAGCCTGTTTT
*
32735 GTAGCACCAAAAATAATATCATCAACATATACTGGTACTATTAAAATATCTTTTTCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
* * * *
32800 AAAGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCCTTTTCAGTTAAAAACATTGAATGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACATTGAAAGTC
32865 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
32930 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAACC
196 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAACC
32995 ATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
261 ATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
*
33060 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGCTTCGTCATAGTCAATACCTTCCT
326 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
33125 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
391 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
33190 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
456 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
33255 TACCTTACTTCTCTCAAATTGATTTAAATTTTCTTGTATAGCCATAATCCAATTTTCATCTTGTA
521 TACCTTACTTCTCTCAAATTGATTT-AATTTTCTTGTATAGCCATAATCCAATTTTCATCTTGTA
*
33320 CGGCCTTATCAATACTTTTAGGCTCTATTTAAGAAAGAAAAGCTACACAGTCGCAAGTATTTCTA
585 CGGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
*
33385 AGACG-AGAGCTAAAGCCTGTTTT
650 AGA-GAAGACCTAAAGCCTGTTTT
* *
33408 GTAGCACCAAAAATAATATCATCAACATAAACTTGTACTATTAAAATATTTTTTTCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
* *
33473 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCTTTTTTCAATTAAAAACTTTGAAAGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACATTGAAAGTC
*
33538 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATTCAAGGCCTTTAAAAGTTTAAAAACATGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
*
33603 TTTGGAAATAGACGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAACC
196 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAACC
33668 ATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
261 ATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
*
33733 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAACGTAGGTTTCGTCATAGTCAATACCTTCCT
326 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
* * *
33798 CTTAACTATAACCTTTAGCTACTATCCTAGCTTTGTTTCTCAGTACTATTCCATCTTCATCTAAT
391 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
*
33863 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTATTTACTAAATACCA
456 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
*
33928 TACCTTACTTCTCTCAAATTGATTTAATTTTTCTTGTATAGCCATAATCCAATTTTTATCTTGTA
521 TACCTTACTTCTCTCAAATTGATTTAA-TTTTCTTGTATAGCCATAATCCAATTTTCATCTTGTA
33993 CGGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
585 CGGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
34058 AGAGAAGACCTAAAGCCTGTTTT
650 AGAGAAGACCTAAAGCCTGTTTT
**
34081 GTAAAACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
*
34146 AAAGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACATTGAAAGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACATTGAAAGTC
*
34211 TATCATACTAAGCTCGAGGAGCTTGTTTTATACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
34276 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCAGTT-ATAAAAC
196 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCA-TTAATAAAAC
* * *
34340 CATTTAAAATGCACTTTTGACATCCATTTGATATAATTTGAAATCATAAAAGCAAGCAAGGGCTA
260 CATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCATAAAAGCAAGCAAAGGCTA
**
34405 GTAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTTTTCATAGTCAATACCTTCC
325 GTAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCC
*
34470 ACTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAA
390 TCTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAA
34535 TTTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACC
455 TTTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACC
*
34600 ATACCTTACTTCTCTCAAATTGATTTAATTCTTCTTGCATAGCCATAATCCAATTTTCATCTTGT
520 ATACCTTACTTCTCTCAAATTGATTTAATT-TTCTTGTATAGCCATAATCCAATTTTCATCTTGT
* * * *
34665 ACGGCCTTATCAATACTTTTAGGCTCTACTTAAGGGAGAAAAGCTGCACAGTCGCTAGTATTTCT
584 ACGGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCT
34730 AAGAGAAGACCTAAAGCCTGTTTT
649 AAGAGAAGACCTAAAGCCTGTTTT
34754 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
*
34819 AAAGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACATTGAAAGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACATTGAAAGTC
* * *
34884 TATCATACTAAGCTTGAGGAGCTTGTTTTATACCATACAAGGCCTTTAAAAGTTTAAAAACTTGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
34949 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAACC
196 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAACC
*
35014 ATTTAAAATGCACATTTGACATCCATTTGATATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
261 ATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
* * * *
35079 TAGAATCCTTATGGCTTCTAACCTAGCTACGGGAGCCTAGGTTTAGTCATAGTCAATAACTTCCT
326 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
35144 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
391 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
*
35209 TTATTTCTAAACACCCATGTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
456 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
* * *
35274 TACCTTACTTCTCTCAAAATGATTTAA--TTCTTGCATAGCCATAATCCAATTTTCATCTTTTAC
521 TACCTTACTTCTCTCAAATTGATTTAATTTTCTTGTATAGCCATAATCCAATTTTCATCTTGTAC
* * * * *
35337 GGCTTTATCAATACTTTTAGGCTCCACTTAAGAGAGAAAAGCTACACAGTCGAAAGTTTTTCTAA
586 GGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTAA
35402 GAGAAGACCTAAAGCCTGTTTT
651 GAGAAGACCTAAAGCCTGTTTT
*
35424 GTAGCACCAAAAATAATATCATCAACATATACTGGTACTATTAAAATATCTTTTTCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
* * *
35489 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCCTTTTCAGTTAAAAACATTGAATGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACATTGAAAGTC
35554 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
35619 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAACC
196 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAACC
35684 ATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
261 ATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
*
35749 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGCTTCGTCATAGTCAATACCTTCCT
326 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
35814 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
391 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
35879 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
456 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
35944 TACCTTACTTCTCTCAAATTGATTTAATTTTTCTTGTATAGCCATAATCCAATTTTCATCTTGTA
521 TACCTTACTTCTCTCAAATTGATTTAA-TTTTCTTGTATAGCCATAATCCAATTTTCATCTTGTA
*
36009 CGGCCTTATCAATACTTTTAGGCTCTATTTAAGAAAGAAAAGCTACACAGTCGCAAGTATTTCTA
585 CGGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
*
36074 AGACG-AGAGCTAAAGCCTGTTTT
650 AGA-GAAGACCTAAAGCCTGTTTT
* *
36097 GTAGCACCAAAAATAATATCATCAACATAAACTTGTACTATTAAAATATTTTTTTCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
* *
36162 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCTTTTTTCAATTAAAAACTTTGAAAGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACATTGAAAGTC
*
36227 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATTCAAGGCCTTTAAAAGTTTAAAAACATGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
36292 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAACC
196 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAACC
*
36357 ATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCTTAAAAGCAAGCAAAGGCTAG
261 ATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
*
36422 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAACGTAGGTTTCGTCATAGTCAATACCTTCCT
326 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
* * *
36487 CTTAACTATAACCTTTAGCTACTATCCTAGCTTTGTTTCTCAGTACTATTCCATCTTCATCTAAT
391 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
36552 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
456 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
* *
36617 TACCTTACTTCTCTCAAATTGATTTTATTTTTCTTGTATAGCCATAATCCAATTTTTATCTTGTA
521 TACCTTACTTCTCTCAAATTGA-TTTAATTTTCTTGTATAGCCATAATCCAATTTTCATCTTGTA
36682 CGGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
585 CGGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
36747 AGAGAAGACCTAAAGCCTGTTTT
650 AGAGAAGACCTAAAGCCTGTTTT
**
36770 GTAAAACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
*
36835 AAAGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACATTGAAAGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACATTGAAAGTC
*
36900 TATCATACTAAGCTCGAGGAGCTTGTTTTATACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
36965 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCAGTT-ATAAAAC
196 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCA-TTAATAAAAC
* * *
37029 CATTTAAAATGCACTTTTGACATCCATTTGATATAATTTGAAATCATAAAAGCAAGCAAGGGCTA
260 CATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCATAAAAGCAAGCAAAGGCTA
*
37094 GTAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTTGTCATAGTCAATACCTTCC
325 GTAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCC
*
37159 ACTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAA
390 TCTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAA
37224 TTTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACC
455 TTTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACC
* * *
37289 ATACCTTACTTCTCTCAAATTGATTTAATTCTTTTTGCATAGCCATAATCCAATTTTCATCTTTT
520 ATACCTTACTTCTCTCAAATTGATTTAATT-TTCTTGTATAGCCATAATCCAATTTTCATCTTGT
* * * * *
37354 ACGGCTTTATCAATACTTTTAGGCTCCACTTAAGAGAGAAAAGCTACACAGTCGAAAGTTTTTCT
584 ACGGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCT
37419 AAGAGAAGACCTAAAGCCTGTTTT
649 AAGAGAAGACCTAAAGCCTGTTTT
*
37443 GTAGCACCAAAAATAATATCATCAACATATACTGGTACTATTAAAATATCTTTTTCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
* * *
37508 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCCTTTTCAGTTAAAAACATTGAATGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACATTGAAAGTC
37573 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
37638 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAACC
196 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAACC
37703 ATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
261 ATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
*
37768 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGCTTCGTCATAGTCAATACCTTCCT
326 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
*
37833 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTTAT
391 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
37898 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
456 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
37963 TACCTTACTTCTCTCAAATTGATTTAATTTTTCTTGTATAGCCATAATCCAATTTTCATCTTGTA
521 TACCTTACTTCTCTCAAATTGATTTAA-TTTTCTTGTATAGCCATAATCCAATTTTCATCTTGTA
*
38028 CGGCCTTATCAATACTTTTAGGCTCTATTTAAGAAAGAAAAGCTACACAGTCGCAAGTATTTCTA
585 CGGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
*
38093 AGACG-AGAGCTAAAGCCTGTTTT
650 AGA-GAAGACCTAAAGCCTGTTTT
*
38116 GTAGCACCAAAAATAATATCATCAACATAAACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
1 GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
* *
38181 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCTTTTTTCAATTAAAAACTTTGAAAGTC
66 AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACATTGAAAGTC
*
38246 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATTCAAGGCCTTTAAAAGTTTAAAAACATGA
131 TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
38311 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAACC
196 TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAACC
38376 ATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
261 ATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
*
38441 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAACGTAGGTTTCGTCATAGTCAATACCTTCCT
326 TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
* *
38506 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTCAGTACTATTCCATCTTCATCTAAT
391 CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
38571 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
456 TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
*
38636 TACCTTACTTCTCTCAAATTGATTTAATTCTTCTTGCATAGCCATAATCCAATTTTCATCTTGTA
521 TACCTTACTTCTCTCAAATTGATTTAATT-TTCTTGTATAGCCATAATCCAATTTTCATCTTGTA
*
38701 CGGCCTTATCAATACTTTTAGGCTCTACTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
585 CGGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTA
38766 AGAGAAGACCTA
650 AGAGAAGACCTA
38778 GTTCTTATCC
Statistics
Matches: 6455, Mismatches: 235, Indels: 46
0.96 0.03 0.01
Matches are distributed among these distances:
670 1290 0.20
671 2 0.00
672 19 0.00
673 5051 0.78
674 93 0.01
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (672 bp):
GTAGCACCAAAAATAATATCATCAACATATACTTGTACTATTAAAATATCTTTTTCTTCTGATTT
AATGAAAAAAGTTTTGTCAACATTTCCTCTGTTAAAGCCTTTTTCAATTAAAAACATTGAAAGTC
TATCATACTAAGCTCGAGGAGCTTGTTTTAGACCATACAAGGCCTTTAAAAGTTTAAAAACATGA
TTTGGAAATAGAGGATTTTCAAAGCTGGGAGGTTGTTCAACATAAACCTCTTCATTAATAAAACC
ATTTAAAATGCACATTTGACATCCATTTGAGATAATTTGAAATCATAAAAGCAAGCAAAGGCTAG
TAAAATCCTTATGGCTTCTAACCTAGCTACGGGAGCGTAGGTTTCGTCATAGTCAATACCTTCCT
CTTAACTATAACCTTTAGCTACTAACCTAGCTTTGTTTCTTACTACTATTCCATCTTCATCTAAT
TTATTTCTAAACACCCATTTAGTCCCTATTATTGGATGATCACTAAGTCTTTTTACTAAATACCA
TACCTTACTTCTCTCAAATTGATTTAATTTTCTTGTATAGCCATAATCCAATTTTCATCTTGTAC
GGCCTTATCAATACTTTTAGGCTCTATTTAAGAGAGAAAAGCTACACAGTCGCAAGTATTTCTAA
GAGAAGACCTAAAGCCTGTTTT
Found at i:47499 original size:474 final size:474
Alignment explanation
Indices: 46183--56404 Score: 11012
Period size: 474 Copynumber: 21.7 Consensus size: 474
46173 GCCTCAAATG
* * * ** * * * *
46183 GATGAGTTTGTTTTGCATGGACATCTAGTCCTTGCCCTATTTTCCTTCAAATCAAAATTAATCCA
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * * *
46248 TTAAATATGTCAAGCTTCGATTCTCATAACAGTCTCCATTCCTTTCAAGATTAGGAACCAAGAAC
66 TTAAATATGACAAGCATCGATTCTCA-ATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAAC
** * *
46313 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTTCCAGAAAAGGTTTTCCTTCCA
130 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCA
* * * * * * *
46378 CCGTTTTTTATGGAATCCAAG-TTGTTTCTTAAATAATACAAACGTGAATACTCATACTAATCCC
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC
* * ** * * *
46442 AATTCCTTTT-AGGATTAGGAATGATAACCATAGTCTTCTCTTAAGGATACAC-ATTACTGATGC
260 CATT-CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA-TATTGATGC
* * * *
46505 TCTGGTTTCGCCAGAAAGGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAAT
323 TTTGGTTTCGCAAGAAAGGCTTTCTTC-CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * * * * *
46570 GAGACAAACAAGGATTTTAGTAAGGATCTTTATTCATTTTGTGATTGGGCACTACAAACACATTA
387 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
46635 TCCTCAATAGGATAAACGATATT
452 TCCTCATTAGGATAAATGATATT
* * * *
46658 GATGATTTTCTTTTGCGTGGAAATCTTTTATTTGCTCTATTTT--TTGCAAAATCAAAATTCATG
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT--AAAATCAAAATTCATC
* * ** *
46721 CCTTAAATATGACAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATGGGGAACCAACA
64 CCTTAAATATGACAAGCATCGATTCTCA-ATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGA
* * * * *
46786 ACACATTCCCTTCATTAGGAT-CCTGACATTGATGCTATGGTGTCGTAGGAAAAGGTTTTTTTTT
128 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGG-TTTTCTTT
* * * *
46850 CCACCATTTTTGATAGAATCAAAGTTTGTCTGTTAAATAAGTC-AATATGAATAGTCATACTAAT
192 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * *
46914 CCCCATTCCTTTCAAGATTAGGCACCATAAACATAGTCTTCTCGTAAGGATACACGATATTGATG
257 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
*
46979 CTTTGGGTTT-GCAAGAAAGCCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTC-A
322 CTTT-GGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
** * *
47042 ATGAGACAAACATGGATTCTAGTAATGATCTTCAGCCATTTTGTG-TTAGGCACTAAAAACATAT
385 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * *
47106 TCTCTTCTTTATGATAAATGACATT
450 TCTCCTCATTAGGATAAATGATATT
* * * * * * * *
47131 GATGATTTTTTTTTGCAAGGAAATCTTTTCTTCGCCATACTTTCCTTAAAGTCAAAATTCAACTC
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * *
47196 TTAAATATGACAAGCATCGATTTTCGAATCTGTCTCCATTCTTTTCAAGGTTAGGAACCAAGAAC
66 TTAAATATGACAAGCATCGATTCTC-AATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAAC
* * *
47261 ACATTCCCTTCATTAGGATATAGGACACTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCA
130 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCA
* *
47326 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATAGTCAAACTAATCCC
195 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC
* * * *
47391 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTGTCATAGGGATACACAATATTGACGCTT
260 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTT
* * * * *
47456 TTGTTTTGCAAGAAAGGCTTTCTTCCAACTAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATGA
325 TGGTTTCGCAAGAAAGGCTTTCTTCC-ACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
* * * *
47521 GACAAACATGTATTCTAGTAATGGTCTTCATTCATTTTGTGATTAGGCACCATGAACACATTCTC
389 GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* **
47586 CTCATTAGGGTAAAACATATT
454 CTCATTAGGATAAATGATATT
* ** * * * *
47607 AATGATTTT-TTTTGTGTGGAAATATTTTCTTTTCCCTATTTTCCATAAAATC-AAAGTCATCCC
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * * * * *
47670 TTAAATAAGGCAAGCATTC-ATTCTTGCAA-CAGTCTCCATTTTTTTAAAGATTCA-GAACTAAA
66 TTAAATATGACAAGCA-TCGATTC-T-CAATCAGTCTCCATTCTTTTCAAGATT-AGGAACCAAG
* * * * * * *
47732 AACACATTACCATCATTAGGATATATGATATTGATGCTTTTGTGTCGCAAGGAAAGCTTTTCTTT
127 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTT
* * * * * *
47797 CGAACGTTTTTGGTAGAATCAAGGTTTGTTTCTTAAATAAGACAAATATGAATAGTCATACTAAT
192 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * *
47862 CCCCATTCTTTTTAGGATTAGGCATCATAAACATAGTCTTCTCATAAGGATACAAGATATTGATG
257 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
*
47927 CTTTGGTTTCGCAAGAAAGGCTTCCTTCACACCAATTTTTGTAAAGT-TGAAGTTCGA-GCCTCA
322 CTTTGGTTTCGCAAGAAAGGCTTTCTTC-CACCAATTTTTGTAAAGTCT-AAGTTC-ATGCCTCA
*
47990 AATAAGA-AAACATGGATTCTAG---TG-TCTTCATTTC-TTTTGTGATTAGGCACTATAAACAC
384 AATGAGACAAACATGGATTCTAGTAATGATCTTCA-TTCATTTTGTGATTAGGCACTATAAACAC
* *
48049 TTTCTCCTTATTAGGATAAATGATATT
448 ATTCTCCTCATTAGGATAAATGATATT
* * *
48076 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTGTTTTCCTTAAAATAAAAATTCATCCT
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * * * * * * * *
48141 TTAAGTATGATAAGCGTCGGTTCTCATAACAGTATCCATTGTTTCCAAGATTGGGAACCAAGAAC
66 TTAAATATGACAAGCATCGATTCTCA-ATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAAC
* * * * *
48206 ACATTCCCTTCATTAGGATATATGACTTTGATGCTTTGGTATCGCAAAAAAAAGGTTTTCATTCC
130 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC-AAGAAAAGGTTTTCTTTCC
* * * * * *
48271 ACCGTTTTTGATGGAATCAGAGTTTGTCTCTGAAATATGACAAACATAAATATTCATACTAATCC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCC
* * * *
48336 CCTTTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGCT
259 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCT
* * * * *
48401 TTGGTTTCACAAGAAAGGCTTTCTTTTCACCAATTTTCGTAATGTCTAAGTTCATGCCTCAAAAG
324 TTGGTTTCGCAAGAAAGGCTTTC-TTCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * * * * * *
48466 AGACAACCATGGATTCTAGTAACGATCTTCTTTCGTTTTGTAATTAGGCACGATAAATAGATTCT
388 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
*
48531 CATCATTAGGATAAATGATATT
453 CCTCATTAGGATAAATGATATT
* * *
48553 GATGA-TTT-TTTT-CATAGAAATCTTTCCTTTGCCCAATTTTCCTTAAAATCAAAATTCATCCC
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * * * *
48615 ATAAATATGACAAGTATCGATTCTTGAAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAAC
66 TTAAATATGACAAGCATCGATTC-TCAATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAAC
* * *** *
48680 AC-TCTCCCTTCATTAGGATACATAACATTTATGCTTTGGTGTTATAAGAAAAGCTTTTCTTTCC
130 ACAT-TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCC
* * * *
48744 ACCATTTTTTATAGAATCAAAGTTTGTCTGTTAAATAAGACAAACATGAATAGTCAAACTAATCC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCC
* ** ** * * *
48809 CTATTCTTTTCAATATTAGGCATGATAAACATAGTCTT-TGCATAAGGTTACACGATATTAACGC
259 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT-CATAAGGATACACGATATTGATGC
** * * * ** * *
48873 TTTGGTTTCATAAGAAAGGCTTTCTTCCCACCACTATTCGTAAAGTCTAACATCGTGCCTCAAAA
323 TTTGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * ** * *
48938 GAGACAAACATGGAATCTAGTAATAATATTTTTTACTTATTTTGTGATTAGGCACCATAAAGACA
387 GAGACAAACATGGATTCTAGTAATGATCTTCATT-C--ATTTTGTGATTAGGCACTATAAACACA
*
49003 TTCTCCTCATTATGATAAATGATATT
449 TTCTCCTCATTAGGATAAATGATATT
* * * *
49029 GACGATTTTATTTAT-CATGGAAATCATTT-TTTGCCCTATTTTCCTTAAAA--AAAATTCA-AC
1 GATGATTTTCTTT-TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCC
* * *
49089 CTTAAAATATGACAAGCATCGATTCTCGTAA-CTA-TCTCTATTCTTTTCGAA-ATTGGGGACCA
65 CTT-AAATATGACAAGCATCGATTCTC--AATC-AGTCTCCATTCTTTTC-AAGATTAGGAACCA
* * * * * * *
49151 GGAACACATTCCCTTTAGTAGGATATATGACATTGATCCTTTGGTGTCACAAGAAAAGGTTTTCA
125 AGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCT
* * * * *
49216 TTACACTGTTTTTGATAGAATCAAAGTTTGT-TACTCAAATAACACAAACATGAATAGTTATACT
190 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCT-CTTAAATAAGACAAACATGAATAGTCATACT
* * * * *
49280 AATCCCTATTCTTTTCAAGATTACGCACCATAAACATAGTCTTCTCTTTAA-GATATACGATATT
254 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-ATAAGGATACACGATATT
* ** * * * ** *
49344 GATCCTTTGGTTTTTCGAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAATTTGTGCGT
318 GATGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCT
* * * *
49409 CAAGTGAGACAAACATGGATTCTAGGAATGATATTCATTCATTTTGTGATTAGGCACCATAAACA
382 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* *
49474 CATTCTCCTAATTAGGATAAATGATACT
447 CATTCTCCTCATTAGGATAAATGATATT
** * *
49502 GATGATTTTCTTTTGGTTGGAAA-----TCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCC
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * * * *
49562 ATAAAAAAGACAAGCATCTATTCTCGTAA-CAGTCTCCGTTCTTTTCAAGATT-GG------G-A
66 TTAAATATGACAAGCATCGATTCTC--AATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAA
* ** * * * *
49618 -AC-TTTCCTTTGTTAGGATACTTGACATTGATGCTTTAGTGTCGTAAGAAATGGTTTTCTTTCC
129 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCC
* * * * * *
49681 CCCGCTTTTGAT--AATCAAAGTTTGTCTCTTAAATAA-AAAAATATCAATAGTCAAAGC-AATC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATA-CTAATC
* * * **
49742 CCCATTCTTTTCAGGACTAGGCACCTTAAACATAGTTTTCTCATAAGGATACACGATATTGACAC
258 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGC
* * * * * * *
49807 ATTGGTTTCGCAAAAAAGGCTTTTTTCCCACTAAATTTTGTAAAATCTATGTTCATGCCTCAAAT
323 TTTGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* **
49872 GAGACAAACATGGATAT-TGGTAACT-ATCTTTTTTCATTTTGTGATTAGGCAC--T------A-
387 GAGACAAACATGGAT-TCTAGTAA-TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* *
49926 -----T-A--AGGACAAATGATATC
450 TCTCCTCATTAGGATAAATGATATT
* * * * * *
49943 GATGGTTTTCATTTGCATGAAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAGTTCATCCC
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * * * *
50008 TTAAATCA-GGCAAGCATTC-ATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACTAAAA
66 TTAAAT-ATGACAAGCA-TCGATTCTCA-ATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGA
** *
50071 ACACATTCCCTTCATTAGGATACATGACATTGATTTTTTGGTGTCACAAGAAAAGGTTTTCTTTC
128 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTC
* * *
50136 CATCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCAAACTAATC
193 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATC
* * * * * * *
50201 CCAATTCTTTTCAGGATTAGGCACCGTAAAAATAGTCTTCTCGTGA-GATACATGATATTGACGC
258 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGC
* ** * * * *
50265 TTTGGTTTCGCAAGAAAGGCTTTCCTCCTACCAATTTTTGTAAAACCTAGGTTCCTACCTCAGAT
323 TTTGGTTTCGCAAGAAAGGCTTTCTTCC-ACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * *
50330 GGGATAAACATGGA---T--T--T--TCTT--TT-ATTTTGTGATTAGGCATTATAATCACATTC
387 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
50383 TCCCCATTAGGATAAATGGTATT
452 TCCTCATTAGGATAAATGATATT
* * *
50406 GATGA-TTTCTTTAGCATGGAAACCTTTTCTTTGCCCTATTTTCCTTAAAATGAAAATTCATCCC
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * * *
50470 TTAAATATGACATGCATCGATTCTCGTAAT-AGCCTCCATTTTTTTCAAGATTCGGAACCAAGAA
66 TTAAATATGACAAGCATCGATTCTC--AATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAA
* ** * *
50534 CACATTCCCTTCATTAAGATACATGACATTGATGCTTTGGCATCTCAAGGAAAGGTTTTCTTTCC
129 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCC
* * * * ** * *
50599 AACATTTTTGATAAAATCAAAATTTGTCTCTTAAATGTGACAAACAAGAATAGTCATACCAATCC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCC
* * *
50664 CCATTCTTTTCAGGATTAGGCGCCATAAACATTGCCTTCTCATAAGGATACACGATATTGATGCT
259 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCT
* * * *
50729 TTGGTTTTGCAAGAAAGGCTTTCTCTCCACCAATTTTTGTCATGTCTAAGTTTATGCCTCAAATG
324 TTGGTTTCGCAAGAAAGGCTTTCT-TCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * *
50794 AGACAAACATGGATTCTAATAATGATCTTGACTCTTTTTGTGATTAGGCACTATAAACACATTCT
388 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
*
50859 CCTCATTACGATAAATGATATT
453 CCTCATTAGGATAAATGATATT
* * * *
50881 GATGATTTTTTTTTGCATGTAAATCTTTTCTTTGCCCTACTTTCCTTTAAAATAAAAATTCATCC
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TTAAAATCAAAATTCATCC
50946 CTTAAATATGACAAGCATCGA-T-TC--TC-GT-T--A--C--TTCAAGATTAGGAACCAAGAAC
65 CTTAAATATGACAAGCATCGATTCTCAATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAAC
* * * * * *
50999 ATATTCCCTTTATTAGAAGAATACATGGCATTGATGCTTCGATGTCGCATGAAAAGGTTTTCTTT
130 ACATTCCCTTCATTAG--G-ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTT
* * * * * *
51064 CCGCTGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACGAACATGAATAGCCATACTAAA
192 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* *
51129 CCCCATTCTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCAAAAGGATACACGATATTGATG
257 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
* * ** * *
51194 CTTTAGTTTCACAAGAAAGGCTTTCTTCCCACCAACATTTGTAAAGTCTAAGTTCATGCTTTAAA
322 CTTTGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* * *
51259 TGAGGCAAACATGGA-T-TACGTAATGATCTTCAATT-ATTTTGTGATTAGGCATTATAATCACA
386 TGAGACAAACATGGATTCTA-GTAATGATCTTC-ATTCATTTTGTGATTAGGCACTATAAACACA
* *
51321 TTCTCCCCATTAGGATAAATGGTATT
449 TTCTCCTCATTAGGATAAATGATATT
* * * *
51347 GAT-AATTTCTTTAGCATGGAAACCTTTTCTTTGCCCTATTTTCCTTAAAATGAAAATTCATCCC
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
** * *
51411 TTAAATATGACTTGCATCGATTCTCGTAAT-AGTCTCCATTTTTTTCAAGATTCGGAACCAAGAA
66 TTAAATATGACAAGCATCGATTCTC--AATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAA
* ** ** *
51475 CACATTCCCTTCATTAGGATATATGACATTGATGCTTTGGCATATCAAGGAAAGGTTTTCTTTCC
129 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCC
* * * * ** * *
51540 AACATTTTTGATAAAATCAAAATTTGTCTCTTAAATGTGACAAACAAGAATAGTCATACCAATCC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCC
* * *
51605 CCATTCTTTTCAGGATTAGGCGCCATAAACATTGCCTTCTCATAAGGATACACGATATTGATGCT
259 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCT
* * * *
51670 TTGGTTTTGCAAGAAAGGCTTTCTTTCCACCAATTTTTGTCATGTCTAAGTTTATGCCTCAAATG
324 TTGGTTTCGCAAGAAAGGCTTTC-TTCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * *
51735 AGACAAACATGGATTCTAGTAATGATCTTGACTCTTTTTGTGATTAGGCACTATAAACACATTCT
388 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
*
51800 CCTCATTACGATAAATGATATT
453 CCTCATTAGGATAAATGATATT
* * * *
51822 GATGATTTTTTTTTTTGCATGTAAATCTTTTCTTTGCCCTACTTTCCTTTAAAATAAAAATTCAT
1 GATGA--TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TTAAAATCAAAATTCAT
51887 CCCTTAAATATGACAAGCATCGA-T-TC--TC-GT-T--A--C--TTCAAGATTAGGAACCAAGA
63 CCCTTAAATATGACAAGCATCGATTCTCAATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGA
* * * * * *
51940 ACATATTCCCTTTATTAGAAGAATACATGGCATTGATGCTTCGATGTCGCATGAAAAGGTTTTCT
128 ACACATTCCCTTCATTAG--G-ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCT
* * * ** *
52005 TTCCGCTGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGATGAACATGAATAGCCATACTA
190 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTA
* * *
52070 AACCCCATTCTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCAAAAGGATACACGATATTGA
255 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
* * ** * *
52135 TGCTTTAGTTTCACAAGAAAGGCTTTCTTCCCACCAACATTTGTAAAGTCTAAGTTCATGCTTTA
320 TGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * *
52200 AATGAGGCAAACATGGA-T-TACGTAATGATCTTCAATT-ATTTTGTGATTAGGCATTATAATCA
384 AATGAGACAAACATGGATTCTA-GTAATGATCTTC-ATTCATTTTGTGATTAGGCACTATAAACA
* *
52262 CATTCTCCCCATTAGGATAAATGGTATT
447 CATTCTCCTCATTAGGATAAATGATATT
* ** *
52290 GATGA-TTTCTTTAGCATGGAAGCCTTTTCTTTGCCCTATTTTCCTTAAAATGAAAATTCATCCC
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
** * *
52354 TTAAATATGACTTGCATCGATTCTCGTAAT-AGTCTCCATTTTTTTCAAGATTCGGAACCAAGAA
66 TTAAATATGACAAGCATCGATTCTC--AATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAA
* ** ** *
52418 CACATTCCCTTCATTAGGATATATGACATTGATGCTTTGGCATATCAAGGAAAGGTTTTCTTTCC
129 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCC
* * * * ** * *
52483 AACATTTTTGATAAAATCAAAATTTGTCTCTTAAATGTGACAAACAAGAATAGTCATACCAATCC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCC
* * * *
52548 CCATTGTTTTCAGGATTAGGCGCCATAAACATTGCCTTCTCATAAGGATACACGATATTGATGCT
259 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCT
* * * *
52613 TTGGTTTTGCAAGAAAGGCTTTCTTTCCACCAATTTTTGTCATGTCTAAGTTTATGCCTCAAATG
324 TTGGTTTCGCAAGAAAGGCTTTC-TTCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * *
52678 AGACAAACATGGATTCTAGTAATGATCTTGACTCTTTTTGTGATTAGGCACTATAAACACATTCT
388 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
*
52743 CCTCATTACGATAAATGATATT
453 CCTCATTAGGATAAATGATATT
* * * *
52765 GATGATTTTTTTTTTGCATGTAAATCTTTTCTTTGCCCTACTTTCCTTTAAAATAAAAATTCATC
1 GATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TTAAAATCAAAATTCATC
52830 CCTTAAATATGACAAGCATCGA-T-TC--TC-GT-T--A--C--TTCAAGATTAGGAACCAAGAA
64 CCTTAAATATGACAAGCATCGATTCTCAATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAA
* * * * * *
52883 CATATTCCCTTTATTAGAAGAATACATGGCATTGATGCTTCGATGTCGCATGAAAAGGTTTTCTT
129 CACATTCCCTTCATTAG--G-ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTT
* * ** * *
52948 TCCGCTGTTTTTGATAGAATCAAAGTTTAACTCTTAAATAAGACGAACATGAATAGCCATACTAA
191 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAA
* * *
53013 ACCCCATTCTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCAAAAGGATACACGATATTGAT
256 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAT
* * ** * *
53078 GCTTTAGTTTCACAAGAAAGGCTTTCTTCCCACCAACATTTGTAAAGTCTAAGTTCATGCTTTAA
321 GCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * *
53143 ATGAGGCAAACATGGA-T-TACGTAATGATCTTCAATT-ATTTTGTGATTAGGCATTATAATCAC
385 ATGAGACAAACATGGATTCTA-GTAATGATCTTC-ATTCATTTTGTGATTAGGCACTATAAACAC
* *
53205 ATTCTCCCCATTAGGATAAATGGTATT
448 ATTCTCCTCATTAGGATAAATGATATT
* * *
53232 GATGA-TTTCTTTAGCATGGAAACCTTTTCTTTGCCCTATTTTCCTTAAAATGAAAATTCATCCC
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
** * *
53296 TTAAATATGACTTGCATCGATTCTCGTAAT-AGTCTCCATTTTTTTCAAGATTCGGAACCAAGAA
66 TTAAATATGACAAGCATCGATTCTC--AATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAA
** ** *
53360 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGCATATCAAGGAAAGGTTTTCTTTCC
129 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCC
* * * * ** * *
53425 AACATTTTTGATAAAATCAAAATTTGTCTCTTAAATGTGACAAACAAGAATAGTCATACCAATCC
194 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCC
* * * *
53490 CCATTCTTTTTAGGATTAGGCGCCATAAACATTGCCTTCTCATAAGGATACACGATATTGATGCT
259 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCT
* * * *
53555 TTGGTTTTGCAAGAAAGGCTTTCTTTCCACCAATTTTTGTCATGTCTAAGTTTATGCCTCAAATG
324 TTGGTTTCGCAAGAAAGGCTTTC-TTCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * *
53620 AGACAAACATGGATTCTAGTAATGATCTTGACTCTTTTTGTGATTAGGCACTATAAACACATTCT
388 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
*
53685 CCTCATTACGATAAATGATATT
453 CCTCATTAGGATAAATGATATT
* * * *
53707 GATGATTTTTTTTTTTTGCATGTAAATCTTTTCTTTGCCCTACTTTCCTTTAAAATAAAAATTCA
1 GATGA---TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TTAAAATCAAAATTCA
*
53772 TCCCTTAAATATGACAACCATCGA-T-TC--TC-GT-T--A--C--TTCAAGATTAGGAACCAAG
62 TCCCTTAAATATGACAAGCATCGATTCTCAATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAG
* * * * * *
53825 AACATATTCCCTTTATTAGAAGAATACATGGCATTGATGCTTCGATGTCGCATGAAAAGGTTTTC
127 AACACATTCCCTTCATTAG--G-ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTC
* * * *
53890 TTTCCGCTGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATAGCCATACT
189 TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACT
* * *
53955 AAACCCCATTCTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCAAAAGGATACACGATATTG
254 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTG
* * ** * *
54020 ATGCTTTAGTTTCACAAGAAAGGCTTTCTTCCCACCAACATTTGTAAAGTCTAAGTTCATGCTTT
319 ATGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTC
* * *
54085 AAATGAGGCAAACATGGA-T-TACGTAATGATCGTCAATT-ATTTTGTGATTAGGCACTATAAGC
383 AAATGAGACAAACATGGATTCTA-GTAATGATCTTC-ATTCATTTTGTGATTAGGCACTATAAAC
** *
54147 ACATTCTTTTCATTAGGATAAATGATTTT
446 ACATTCTCCTCATTAGGATAAATGATATT
* * * * *
54176 GATGATTTTCTTTTGCTTGGAAATCTATCCTTTACCCTA-TTTCCTTTAAAATCGAAATTCATCC
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC-TTAAAATCAAAATTCATCC
* * * * *
54240 CTTAAATATGATAAGCATCGATTCTCATAAT-AGTCTCTATTTTTTTCAAGATTGGGAACTAAGA
65 CTTAAATATGACAAGCATCGATTCTC--AATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGA
* * * * *
54304 ACATATTCCTTTCATTAAGATACATGACATTGATGCTTTGGTAT-GTCAAGAAAAAGTTTTCTTT
128 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG-CAAGAAAAGGTTTTCTTT
* * * * * * *
54368 CCACCCTTTTTAATAGAATCAAAATTTGTCTCCTAAATATGACAAACAAGAATAGTCATACTATT
192 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * * * * * *
54433 TCCCATTCTTTTTAGGATTAGTCACTATAAATATAGTCTTCTCATAAGGATACACAATATTGATA
257 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
* * * * *
54498 CTTTGGTTTCGCAAGAAAGGCTTTCTTTCCACCAATTTTTGGTCATGTCTAAGTTCGTTCCTGAA
322 CTTTGGTTTCGCAAGAAAGGCTTTC-TTCCACCAATTTTT-GTAAAGTCTAAGTTCATGCCTCAA
* * *
54563 ATGAGACAAATATGGATTCTAGTAATGATCTTCACTCATTTTGTGATTAGGCACCATAAACACAT
385 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* *
54628 TCTCCCCATTAGGTTAAATGATATT
450 TCTCCTCATTAGGATAAATGATATT
* * * * * *
54653 GATGA-TTTGTTTTGAATGGAAATCTTTACTTTGCCCTATTTTCATCAAAATCAATATTCA-CAC
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATC-C
* * * * * * *
54716 ATTAACTATGACAAGCATTGATTCCCATAACAGTCTCCATTCTTTTAAAGATTGGGAACCAAGAA
65 CTTAAATATGACAAGCATCGATTCTCA-ATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAA
* * * * * * *
54781 CACATTTCCTTCATTAGGATACAAGACATTCATGCTTTGATATCG-TAGTAAAAGCTTTTCTTTC
129 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG-AAAAGGTTTTCTTTC
* * *
54845 CA-TGATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA-ATGAATAGTCATACTAGT
193 CACCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
** *
54908 CCCTTTTCTTTTCAGGATTAGGCAGCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
257 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
* *
54973 CTTTGGCTTCGCAAGAAAGGCTTTCTTCCACC-ATTATTTGTAAAGTCTAAGTTCGTGCCTCAAA
322 CTTTGGTTTCGCAAGAAAGGCTTTCTTCCACCAATT-TTTGTAAAGTCTAAGTTCATGCCTCAAA
* * ** * * *
55037 AGAGACAAACATGGAATCTAGTAATGATCTTTTTTTATTTTGTGATTAGGCACCATAAACTCATT
386 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
55102 -TGCCTCATTAGGATAAATGATATT
451 CT-CCTCATTAGGATAAATGATATT
* * * * * * * * *
55126 GACGATTTTATTTAGCATGGAAATCATTTCTTTACTCAATTTTCCTTAAAAT-AACAATTTACCC
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA-AATTCATCC
* * * *
55190 CTAAAATATAACAAGCATTGATTCTCATAAT-A-TCTCCATTCTTTTCAATATTAGGAACCAAGA
65 CTTAAATATGACAAGCATCGATTCTC--AATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGA
* * *
55253 ACACATTCCCTTCATTAGGATACATGACATTGATCCTTTGGTGTTGCAAGAAAAGGTTTTCTTTG
128 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTC
* *
55318 CACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATTCTAATC
193 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATC
* ** * * *
55383 CCTATTCTTTTCAATATTAGGCACCATAAACATAGTCTTTTCATTAA-GATATATG--ATTGATG
258 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATATTGATG
* * * * *
55445 CTTTGGTTTCGCAAGAAGGGCTTTTTTCCCACCAA-TTTTGTAAAGTTTAAGTTCGTGCCTTAAA
322 CTTTGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* * * * * *
55509 TGAGACAAACATTGATTCTAGGAATGGTCTTCATTCATTTTGTGATTATGCACCATAAACATATT
386 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* *
55574 CTCCTAATTAGGATAAATGATACT
451 CTCCTCATTAGGATAAATGATATT
* * * * * * *
55598 GATGATTTTCTTTTGGATGTAAATCTTTTTTTTTCCCTATTTTCCTCAAAATCAGAGTTCAT-CC
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * * * * * * * *
55662 TATAAAAAAGACAAGCATCTATTCTCACAACAGCCTACATT-TTCTTCAAGATTGGGATCTAAGA
66 T-TAAATATGACAAGCATCGATTCTCA-ATCAGTCTCCATTCTT-TTCAAGATTAGGAACCAAGA
* * * ** *
55726 ACACATTCTCTTCGTTAGGATACTTGACATTGATGCTTTGGTGTCATAAGAAATGGTTTTCTTTC
128 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTC
* * * *
55791 C-CTCGTTTTTGATAGAATCAAAGTTTATGTCTTAAATAAGAAAAACATGAATAGTCAAAGC-AA
193 CAC-CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATA-CTAA
* * *
55854 TCCCCATTCTTTTCAGGATTAAGCACCTTAAACATAGTCTTCTCATAAGGATACACTATATTGA-
256 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAT
* * * * ** *
55918 -CATATTGGTTTCACAAGAAAGGCTTTCTTCTCACTAATTTTTATAAAATCTAAGTTTGTACCTC
321 GC-T-TTGGTTTCGCAAGAAAGGCTTTCTTC-CACCAATTTTTGTAAAGTCTAAGTTCATGCCTC
* * * *
55982 AAATGAGACAAACATGGATTTTGGTAA-GTATCTTCTTTCATTTTGTGTTTAGGCACTATAAACA
383 AAATGAGACAAACATGGATTCTAGTAATG-ATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * *
56046 CATTCTCCTTATTAGCATAAATGATTTT
447 CATTCTCCTCATTAGGATAAATGATATT
* * * * * * *
56074 GATGGTTTTCATTTGCATGAAAAGCTTCTCTTTGCCCTATTCTCCTTAAAATCAAAGTTCATCCC
1 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * *** * * * *
56139 TTAAAAAAGGTGAGCATTC-ATTCTCGTAA-CAATCTCCACTCTTTTCAAGATTGGGAACTAA-A
66 TTAAATATGACAAGCA-TCGATTCTC--AATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGA
* * *
56201 ACCACATTCCCTTCATTAGGATACATGACATTGACT-TTTTGGGGTTGCAAGAAAAGGTTTTCTT
128 A-CACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGTCGCAAGAAAAGGTTTTCTT
* * * *
56265 TCCACCATTTCTT-ATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAAAATA
191 TCCACCGTTT-TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTA
** * * * ** * *
56329 ATCCCCATTCTTTTCAGGATTACACACAATAAAAATAGTTTTCTTGTAAGGATACCCGATATTAA
255 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
56394 TGCTTTGGTTT
320 TGCTTTGGTTT
56405 TCTCGTAAGA
Statistics
Matches: 8125, Mismatches: 1326, Indels: 591
0.81 0.13 0.06
Matches are distributed among these distances:
441 30 0.00
443 1 0.00
444 2 0.00
445 1 0.00
446 89 0.01
447 7 0.00
448 1 0.00
449 4 0.00
450 2 0.00
453 1 0.00
454 2 0.00
455 3 0.00
456 61 0.01
457 5 0.00
458 264 0.03
459 83 0.01
460 1 0.00
461 62 0.01
462 250 0.03
463 96 0.01
464 150 0.02
465 184 0.02
466 136 0.02
467 323 0.04
468 284 0.03
469 361 0.04
470 278 0.03
471 152 0.02
472 401 0.05
473 932 0.11
474 1421 0.17
475 934 0.11
476 1022 0.13
477 328 0.04
478 134 0.02
479 84 0.01
480 36 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (474 bp):
GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
TTAAATATGACAAGCATCGATTCTCAATCAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAACA
CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCAC
CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCC
ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
GGTTTCGCAAGAAAGGCTTTCTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGA
CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT
CATTAGGATAAATGATATT
Found at i:57725 original size:469 final size:467
Alignment explanation
Indices: 56590--58101 Score: 1638
Period size: 469 Copynumber: 3.2 Consensus size: 467
56580 GTTTCTCTCA
* * * * *
56590 TTTGATAAGATTATGTTTATGGAGTCTAACCCTGAAAAGAATACGGATTAGTATGAGTATTCATT
1 TTTGATAAGATTATGTTTATGGAGCCTAA-TCTGAAAAGAATGCGGATTAGTATGACTATTCATA
* * *
56655 GCTGTCTTATTTATGAGATAAACTTTCATAATATCAAAAATGTGGAAAGAAATGCTTTTCTTGCG
65 GTTGTCTTATTTATGAGATAAACTTTAATAATATCAAAAAGGTGGAAAGAAATGCTTTTCTTGCG
* * *
56720 ACACAAAAGCGTCAATGTCATGTATCCTAATAAAGGGATTGTGGTCTTGGTTCCCAATCTT-GAA
130 ACACCAAAGCGTCAATGTCATGTATCCTAATAAAGGGAATGTGCTCTTGGTTCCCAATCTTGGAA
* * *
56784 AAAATGGAGATTATTACGAGAAACAATGCTTGCCATATTTAAGGGATGAATTTTGATTTTAAAGA
195 AAAATGGAGATTATTATGAGAAACGATG-TTGCCATATTTAAGGGATGAATTTTGATTTTAAGGA
*
56849 AAGTAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTAATATCATTTATGGTAATGAGGA
259 AAGTAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTAATATCATTTATCGTAATGAGGA
* * * *
56914 GAATGTGTTTGTAGTGTCTAATCACAAAATGACTGAAGATCATTACTAGAATCCATGTTTCTCTC
324 GAATGTGTTT-AAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTCTCTC
* * *
56979 ATTTAAGGCATGAACTTAGACTTTATAAAATTTGGTGGGAAAAAAGCCTTTCATATGAAACCAAA
388 ATTTAAGGCATAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC-TT-ATAT---ACCAAA
*
57044 GAGTCAACATCAAGTATGCT
448 GAGTCAACATCAAGTATCCT
* * * * * * *
57064 TTTGAGAAGACTATGTTCATGGTGCCTAATCTTGAAAAAAATGTGGATTAGTCTGACTATTCATA
1 TTTGATAAGATTATGTTTATGGAGCCTAATC-TGAAAAGAATGCGGATTAGTATGACTATTCATA
* * * * ** * *
57129 TTTGTCTTATTTAAGTGACAAACTTTAATTCTATCAAAAATGGTGGAAAGGAAA-GGTTTTATTG
65 GTTGTCTTATTTATGAGATAAACTTTAATAATATCAAAAA-GGTGGAAA-GAAATGCTTTTCTTG
* * * * * * *
57193 CGATACCAAAACATTAATGTCATGTATTCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGG
128 CGACACCAAAGCGTCAATGTCATGTATCCTAATAAAGGGAATGTGCTCTTGGTTCCCAATCTTGG
* * * ** *
57258 AAAGAATGGAGACTGTTATGAGAATTGATGTTTGTCC-TATTTAAGGGATGAATTTTGTTTTTAA
193 AAAAAATGGAGATTATTATGAGAAACGATG-TTG-CCATATTTAAGGGATGAATTTTGATTTTAA
* * * * * * * *
57322 GGAAAATAGAGCAAAGAATAGATTTCCAAGCAAAAGAAATTCATCAATATCATCTT-TCCTAATG
256 GGAAAGTAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTAATATCAT-TTATCGTAATG
* *
57386 AGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCCATGTTTG
320 AGGAGAATGTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA-CCCATGTTTC
* * *
57451 TCTTATTTGAGGCATAAACTTAGACTTTTACAAAAATTGGTGGGAAGAAAGCC-T-T-T-CCAAA
384 TCTCATTTAAGGCATAAACTTAGAC-TTTACAAAAATTGGTGGGAAAAAAGCCTTATATACCAAA
* **
57512 GCA-TCAATATCGTGTATCCTT
448 G-AGTCAACATCAAGTATCC-T
* * * *
57533 TTTGATAAGATTATGTTTATGGAGCCTAATTCGGAAAAGAATGGGGATTAGTATGACTATTCGTG
1 TTTGATAAGATTATGTTTATGGAGCCTAA-TCTGAAAAGAATGCGGATTAGTATGACTATTCATA
* * *
57598 GTTGTCTTATTTGTGAGATAAATTTTGATAATATCAAAAACGGTGGAAAGAAATGCTTTTCTTGC
65 GTTGTCTTATTTATGAGATAAACTTTAATAATATCAAAAA-GGTGGAAAGAAATGCTTTTCTTGC
* * *
57663 GGCACCAAAGCGTCAATGTCATGTATCCTAATAAAGGGAATGTGCTCTTGGCTCCCAATCTTGAA
129 GACACCAAAGCGTCAATGTCATGTATCCTAATAAAGGGAATGTGCTCTTGGTTCCCAATCTTG-G
*
57728 AAAAAATGGAGATTTTTATGAGAAACGATAGTTGCCATATTTAAGGGATGAATTTTGATTTTAAG
193 AAAAAATGGAGATTATTATGAGAAACGAT-GTTGCCATATTTAAGGGATGAATTTTGATTTTAAG
* *
57793 GAAAGTAGGGCAAATAAAAGATTTTCATGCAAAAGAAAATCATTAATATCATTTATTGTAATGAG
257 GAAAGTAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTAATATCATTTATCGTAATGAG
* * * *
57858 AAAAATGTGTTTATAGTGCCTAATCACAAATGCCTAATCACAAAATGACTAAAGATCATTACTGG
322 GAGAATGTGTTTA-AGTGCCTAATCAC-AA-----AAT----GAATG----AAGATCATTACTAG
* * * * * *
57923 AATCCATGTTTCTTTCATTTGAGGCATGAACTTAGACTTTACAAAATTTGGTGGGAATAAAGCCT
372 AACCCATGTTTCTCTCATTTAAGGCATAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC-
* * * *
57988 TTCATGCGAAACCAAAGCGTCAATATCATGTATCCT
436 TT-AT---ATACCAAAGAGTCAACATCAAGTATCCT
* * * * * * * *
58024 TTTGAGAAGACTATGTTCATGGTGCCTAATCCTGAAAAAAATGTGGATTAGTTTGACTATTCATT
1 TTTGATAAGATTATGTTTATGGAGCCTAAT-CTGAAAAGAATGCGGATTAGTATGACTATTCATA
* *
58089 TTTGTCTTTTTTA
65 GTTGTCTTATTTA
58102 AGAGGCAAGC
Statistics
Matches: 853, Mismatches: 143, Indels: 67
0.80 0.13 0.06
Matches are distributed among these distances:
468 22 0.03
469 160 0.19
470 118 0.14
471 14 0.02
472 3 0.00
473 2 0.00
474 83 0.10
475 107 0.13
476 151 0.18
477 31 0.04
481 4 0.00
483 25 0.03
484 30 0.04
485 16 0.02
487 1 0.00
490 1 0.00
491 64 0.08
492 21 0.02
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (467 bp):
TTTGATAAGATTATGTTTATGGAGCCTAATCTGAAAAGAATGCGGATTAGTATGACTATTCATAG
TTGTCTTATTTATGAGATAAACTTTAATAATATCAAAAAGGTGGAAAGAAATGCTTTTCTTGCGA
CACCAAAGCGTCAATGTCATGTATCCTAATAAAGGGAATGTGCTCTTGGTTCCCAATCTTGGAAA
AAATGGAGATTATTATGAGAAACGATGTTGCCATATTTAAGGGATGAATTTTGATTTTAAGGAAA
GTAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATTAATATCATTTATCGTAATGAGGAGA
ATGTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTCTCTCATT
TAAGGCATAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTATATACCAAAGAGTCAAC
ATCAAGTATCCT
Found at i:57893 original size:14 final size:14
Alignment explanation
Indices: 57874--57901 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
57864 GTGTTTATAG
57874 TGCCTAATCACAAA
1 TGCCTAATCACAAA
57888 TGCCTAATCACAAA
1 TGCCTAATCACAAA
57902 ATGACTAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.29, G:0.07, T:0.21
Consensus pattern (14 bp):
TGCCTAATCACAAA
Found at i:58922 original size:818 final size:813
Alignment explanation
Indices: 57312--58938 Score: 2528
Period size: 818 Copynumber: 2.0 Consensus size: 813
57302 GGGATGAATT
* *
57312 TTGTTTTTAAGGAAAATAGAGCAAAGAATAGATTTCCAAGCAAAAGAAATTCATCAATATCATCT
1 TTGTTTTTAAGGAAAATAGAACAAAGAATAGATTTCCAAGCAAAAGAAAATCATCAATATCATCT
* *
57377 TTCCTAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACC
66 TTCCTAATGAGGAGAATTTGTTTAAGTGCCTAATCAAAAAACGAATGAAGATCATTACTAGAACC
* *
57442 CCATGTTTGTCTTATTTGAGGCATAAACTTAGACTTTTACAAAAATTGGTGGGAAGAAAGCCTTT
131 CCATGTTTGTCTTATTTGAGGCACAAACTTAGACTTTTACAAAAATTGGTGAGAAGAAAGCCTTT
*
57507 CCAAAGCATCAATATCGTGTATCCTTTTTGATAAGATTATGTTTATGGAGCCTAATTCGGAAAAG
196 CCAAAGCATCAATATCGTGTATCCTTTTTGATAAGATTATGTTTATGGAGCCTAATCCGGAAAAG
* * * * *
57572 AATGGGGATTAGTATGACTATTCGTGGTTGTCTTATTTGTGAGATAAATTTTGATAATATCAAAA
261 AATGGGAATTAGTAGGACTATTCATGGTTGTCTTATTTATGAGATAAACTTTGATAATATCAAAA
* *
57637 ACGGTGGAAAGAAATGCTTTTCTTGCGGCACCAAAGCGTCAATGTCATGTATCCTAATAAAGGGA
326 ACGGTGGAAAGAAATACTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAATAAAGGGA
* * *
57702 ATGTGCTCTTGGCTCCCAATCTTGAAAAAAAATGGAGATTTTTATGAGAAACGATAGTTGCCATA
391 ATGTGCTCTTGGCTCCCAATCTTGAAAAAAAATGGAAATTATTACGAGAAACGATAGTTGCCATA
* * *
57767 TTTAAGGGATGAATTTTGATTTTAAGGAAAGTAGGGCAAATAAAAGATTTTCATGCAAAAGAAAA
456 TTTAAGGGATGAATATTGATTTTAAGAAAAGTAGGGCAAAAAAAAGATTTTCATGCAAAAGAAAA
**
57832 TCATTAATATCATTTATTGTAATGAGAAAAATGTGTTTATAGTGCCTAATCACAAATGCCTAATC
521 TCATTAATATCATTTATCATAATGAGAAAAATGTGTTTATAGTG-----------AT-CCTAATC
* *
57897 ACAAAATGACTAAAGATCATTACTGGAATCCATGTTTCTTTCATTTGAGGCATGAACTTAGACTT
574 ACAAAATGACTAAAGATCATTACTAGAATCCATGTTTCTTTCATTTGAGGCACGAACTTAGACTT
* **
57962 TACAAAATTTGGTGGGAATAAAGCCTTTCATGCGAAACCAAAGCGTCAATATCATGTATCCTTTT
639 TACAAAATTTGGTGGGAAAAAAGCCTTTCACACGAAACCAAAGCGTCAATATCATGTATCCTTTT
* *
58027 GAGAAGACTATGTTCATGGTGCCTAATCCTGAAAAAAATGTGGATTAGTTTGACTATTCATTTTT
704 GAGAAGACTATGCTCATGGTGCCTAATCCTGAAAAAAATGTGGATTAGTCTGACTATTCATTTTT
* * *
58092 GTCTTTTTTAAGAGGCAAGCTTTAATTCTATCAAAACCAGTGGAA
769 GTCTTATTTAAGAGACAAACTTTAATTCTATCAAAACCAGTGGAA
* *
58137 TTGTTTTTAAGGAAAATAGAACAAAGAATAGATTTTCAAGCAAAAGAAAATCATCAATATCATTT
1 TTGTTTTTAAGGAAAATAGAACAAAGAATAGATTTCCAAGCAAAAGAAAATCATCAATATCATCT
*
58202 TTCGTAATGAGGAGAATTTGTTTAAGTGCCTAATCAAAAAACGAATGAAGATCATTACTAGAA-C
66 TTCCTAATGAGGAGAATTTGTTTAAGTGCCTAATCAAAAAACGAATGAAGATCATTACTAGAACC
* *
58266 CCATGTTTGTCTTATTTGTGGCACGAACTTAGACTTTTACAAAAATTGGTGAGAAGAAAGCCTTT
131 CCATGTTTGTCTTATTTGAGGCACAAACTTAGACTTTTACAAAAATTGGTGAGAAGAAAG-C---
** *
58331 CTTGTGAAACCAAAGTGTCAATATCGTGTATCCTTTTTGATAAGATTATGTTTATGGAGCCTTAT
192 CTT-T----CCAAAGCATCAATATCGTGTATCCTTTTTGATAAGATTATGTTTATGGAGCCTAAT
* *
58396 CCTGAAAAGATTGGGAATTAGTAGGACTATTCATGGTTGTCTTATTTATGAGATAAACTTTGATA
252 CCGGAAAAGAATGGGAATTAGTAGGACTATTCATGGTTGTCTTATTTATGAGATAAACTTTGATA
*
58461 ATATCAAAAACGGTGGAAAGAATTACTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTA
317 ATATCAAAAACGGTGGAAAGAAATACTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTA
* *
58526 ATAAAGGGAATGTGGTCTTGGTTCCCAATCTTG-AAAAAAATGGAAATTATTACGAGAAACGAT-
382 ATAAAGGGAATGTGCTCTTGGCTCCCAATCTTGAAAAAAAATGGAAATTATTACGAGAAACGATA
58589 GCTTGCCATATTTAAGGGATGAATATTGATTTTAAGAAAAGTAGGGCAAAAAAAAGATTTTCATG
447 G-TTGCCATATTTAAGGGATGAATATTGATTTTAAGAAAAGTAGGGCAAAAAAAAGATTTTCATG
* *
58654 CAAAAGAAAATCATTAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTG-T-CTAATCAC
511 CAAAAGAAAATCATTAATATCATTTATCATAATGAGAAAAATGTGTTTATAGTGATCCTAATCAC
*
58717 AAAATGACTGAAGATCATTACTAGAATCCATGTTTCTCTT-ATTTGAGGCACGAACTTAGACTTT
576 AAAATGACTAAAGATCATTACTAGAATCCATGTTTCT-TTCATTTGAGGCACGAACTTAGACTTT
* * * *
58781 ACAAAATTTGGTGGGAAAAAAGCCTTTCGCACGAAACCAAAGTGTTAATATTATGTATCCTTTTG
640 ACAAAATTTGGTGGGAAAAAAGCCTTTCACACGAAACCAAAGCGTCAATATCATGTATCCTTTTG
*
58846 AGAAGACTATGCTCATGGTGCCTAATCTTGAAAAAAATGTGGATTAGTCTGACTATTCATTTTTG
705 AGAAGACTATGCTCATGGTGCCTAATCCTGAAAAAAATGTGGATTAGTCTGACTATTCATTTTTG
58911 TCTTATTTAAGAGACAAACTTTAATTCT
770 TCTTATTTAAGAGACAAACTTTAATTCT
58939 GTTAAAAAAG
Statistics
Matches: 738, Mismatches: 53, Indels: 29
0.90 0.06 0.04
Matches are distributed among these distances:
818 211 0.29
819 2 0.00
820 1 0.00
824 57 0.08
825 122 0.17
828 3 0.00
829 1 0.00
831 1 0.00
832 137 0.19
833 203 0.28
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (813 bp):
TTGTTTTTAAGGAAAATAGAACAAAGAATAGATTTCCAAGCAAAAGAAAATCATCAATATCATCT
TTCCTAATGAGGAGAATTTGTTTAAGTGCCTAATCAAAAAACGAATGAAGATCATTACTAGAACC
CCATGTTTGTCTTATTTGAGGCACAAACTTAGACTTTTACAAAAATTGGTGAGAAGAAAGCCTTT
CCAAAGCATCAATATCGTGTATCCTTTTTGATAAGATTATGTTTATGGAGCCTAATCCGGAAAAG
AATGGGAATTAGTAGGACTATTCATGGTTGTCTTATTTATGAGATAAACTTTGATAATATCAAAA
ACGGTGGAAAGAAATACTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAATAAAGGGA
ATGTGCTCTTGGCTCCCAATCTTGAAAAAAAATGGAAATTATTACGAGAAACGATAGTTGCCATA
TTTAAGGGATGAATATTGATTTTAAGAAAAGTAGGGCAAAAAAAAGATTTTCATGCAAAAGAAAA
TCATTAATATCATTTATCATAATGAGAAAAATGTGTTTATAGTGATCCTAATCACAAAATGACTA
AAGATCATTACTAGAATCCATGTTTCTTTCATTTGAGGCACGAACTTAGACTTTACAAAATTTGG
TGGGAAAAAAGCCTTTCACACGAAACCAAAGCGTCAATATCATGTATCCTTTTGAGAAGACTATG
CTCATGGTGCCTAATCCTGAAAAAAATGTGGATTAGTCTGACTATTCATTTTTGTCTTATTTAAG
AGACAAACTTTAATTCTATCAAAACCAGTGGAA
Found at i:59151 original size:476 final size:474
Alignment explanation
Indices: 58141--66607 Score: 9427
Period size: 475 Copynumber: 17.8 Consensus size: 474
58131 GTGGAATTGT
* * *
58141 TTTTAAGGAAAATAGAACAAAGAATAGATTT-TCAAGCAAAAGAAAATCATCAATATCATTTTTC
1 TTTTAAGGAAAATAGAGCAAAGAATAGATTTCT-ATGCAAAAGAAAATCATCAATATCATTTATC
* * * * *
58205 GTAATGAGGAGAATTTGTTTAAGTGCCTAATCAAAAAACGAATGAAGATCATTACTAGAACCCAT
65 CTAATGAGGAGAATGTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * *
58270 GTTTGTCTTATTTGTGGCACGAACTTAGACTTTTACAAAAATTGGTGAGAAGAAAGCCTTTCTTG
130 GTTTGTCTCATTTGAGGCACGAACTTAGAC-TTTAC-AAAATTGGTGGGAAGAAAGCCTTTCTTG
* * * * * * *
58335 TGAAACCAAAGTGTCAATATCGTGTATCCTTTTTGATAAGATTATGTTTATGGAGCCTTATCCTG
193 TGAAACCAAAGCGTCAATATCATGTATCC-TTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * * * * **
58400 AAAAGATTGGGAATTAGTAGGACTATTCATGGTTGTCTTATTTATGAGATAAACTTTGATAATAT
257 AAAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTAT
* * * * *
58465 CAAAAACGGTGGAAAGAATTA-CTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAATA
322 CAAAAACGGTGGAAAGAA-AAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATG
* * * * * * *
58529 AAGGGAATGTGGTCTTGGTTCCCAATCTTGAAAAAAATGGAAATTATTACGAGAAACGATGCTTG
386 AAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
* *
58594 CCATATTTAAGGGATGAATATTGA
451 TCATATTTAAGGGATGAATTTTGA
* * * *
58618 TTTTAA-GAAAAGTAGGGCAAAAAAAAGATTT-TCATGCAAAAGAAAATCATTAATATCATTTAT
1 TTTTAAGGAAAA-TAGAGCAAAGAATAGATTTCT-ATGCAAAAGAAAATCATCAATATCATTTAT
* * *
58681 CATAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGACTGAAGATCATTACTAGAATCC
64 CCTAATGAGGAGAATGTGTTTA-AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * **
58746 ATGTTTCTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGGGAAAAAAGCCTTTCGC
128 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA-TTGGTGGGAAGAAAGCCTTTCTT
** * * * * * * *
58811 ACGAAACCAAAGTGTTAATATTATGTATCCTTTTGAGAAGACTATGCTCATGGTGCCTAATCTTG
192 GTGAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * * * *
58876 AAAAAAATGTGGATTAGTCTGACTATTCATTTTTGTCTTATTTAAGAGACAAACTTTAATTCTGT
257 AAAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTAT
* * *
58941 TAAAAAAGGTGGGAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATGA
322 CAAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATGA
* * * * * * *
59006 A-TGAATGTGTTCTTCGTTCCCAATCTTAAAAAGAATAGAGACTGTTATGATAATCAATGCTTTT
387 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGT
* * *
59070 CCTATTTAAGGAATGAATTTTGT
452 CATATTTAAGGGATGAATTTTGA
* * * * *
59093 TTTTAAGGAAAATACAGCAAAGAATAGATTTGTAGGCAAAAAAAAAATCATCAATATCATTTTTC
1 TTTTAAGGAAAATAGAGCAAAGAATAGATTTCTATGC-AAAAGAAAATCATCAATATCATTTATC
* * * * *
59158 CTAATCAGGAGAATATGTTTAAGTGCATAATCACAAAACGAATGAAGATCATTACTAGAACCCAT
65 CTAATGAGGAGAATGTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * *
59223 GTTTGTCTTATTTGAGGCACGAACTTAGACTTTTATAGAAATTAGTGGGAAGAAAGCCTTTCTTG
130 GTTTGTCTCATTTGAGGCACGAACTTAGAC-TTTACA-AAATTGGTGGGAAGAAAGCCTTTCTTG
** * * * * * *
59288 CAAAACCAAAGCATCAATATCATGTATCCTTTTTGATAAGATTATGTTTATGGAGCCTAATCTTG
193 TGAAACCAAAGCGTCAATATCATGTATCC-TTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * * **
59353 AAAAGAATAGGGATTAGTATGACTATTCATGGTTGTCTTATTTATGAGATAAACTTTGATAATAT
257 AAAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTAT
* * * * * * * * *
59418 CAAAAACAGTGCAAAGAAATGGTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCGTAATAA
322 CAAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATGA
* * * * *
59483 AGCGAATGTGGTCTTGGTTCCCAATCTTGAAAAAACAAATGGAGATTGTTATGAGAAACGATGCT
387 AGGGAATGTGTTCTTGGTTCCCAATCTTG--AAAA-GAATGGAGACTGTTATGAGAATCGATGCT
* *
59548 TGCCATATTTAAGGGATTAATTTTGA
449 TGTCATATTTAAGGGATGAATTTTGA
* * * * * * * *
59574 TTTTGAGGAAAGTAGGGCAAAGAAAAGATTT-TCATGAAAAAAAAAATCATTAATATCATTTATT
1 TTTTAAGGAAAATAGAGCAAAGAATAGATTTCT-ATGCAAAAGAAAATCATCAATATCATTTATC
* * * * * *
59638 GTAATGAGGAGTATATGTTTATAGTGCCTAATCACAAAATGACTAAAGATCATTACTTGAATCCA
65 CTAATGAGGAGAATGTGTTTA-AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * * * *
59703 TGTTTCTTTCATTTGAGGCATGAACTTAGACTTTACCAAATTTGGTGGGAAGAAAGCGTTTCATG
129 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAATTGGTGGGAAGAAAGCCTTTCTTG
* * * * * *
59768 CGAAACCAAAGAGTCAATATCATGTATCCTTTTGAGAGGACTATGTTCATGGTGCCTAATCCTAA
193 TGAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * * *
59833 AAAAAATGTGGATTAGTCTGACTATTCATTTTTGTCTTATTTAAGAGACAAACTTTAATTCTATC
258 AAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATC
* *
59898 TAAAACGGTGGAAAGAAAAGCTTTT-TTAGCGATACCAAAGCATCAACGTCATGTATCCTAATGA
323 AAAAACGGTGGAAAGAAAAGCTTTTATT-GCGATACCAAAGCATCAATGTCATGTATCCTAATGA
* * * ** *
59962 AAGGAATGTGTTCTTGGTTCCTAGTCTTGAAAAGGGTGGAGACTGTTTTGAGAATCGATGCTTGT
387 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGT
* *
60027 CCTATTTAAGGGATGAATTTTGT
452 CATATTTAAGGGATGAATTTTGA
* * * * * *
60050 TTTTATGGAAAATAGAGCAAGGAACAGATTTCCAGGCAAAAGAAAATCATCAATATCATTTTTCC
1 TTTTAAGGAAAATAGAGCAAAGAATAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCC
** * *
60115 TAAAAAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAG
66 TAATGAGGAGAATGTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * * * *
60180 TTTATCTCATTTGGGGCACGAACTTAGACTTTATAGAAATTAGTGAGAAGAAAACGTTTCTTG-G
131 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACA-AAATTGGTGGGAAGAAAGCCTTTCTTGTG
* * * * * * * *
60244 AAAACTAAAACATCAATATCGTGTATCCTTTTGAGAAGACTGTGTTCATGGTGCCTAATCTTGAA
195 -AAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
** * * * * *
60309 AAAAATGTAGATTAGTGTGACTATTTATTTTTATCTTATTTAAGAGATAAACTTTGATTCTACCA
259 AAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCA
* * *
60374 AAAACGGTTGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCAAGTATCCTAACGAAG
324 AAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAG
* * *
60439 GGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTATGAGAATTGATGCTTATCA
389 GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCA
* * *
60504 TATTTAACGAATGAATGTTGA
454 TATTTAAGGGATGAATTTTGA
* * *
60525 TTTTAAGGAAAATAGAGCAAAAAATAGATTTCCAGGCAAAAGAAAATCATCAATATCATTT-TCC
1 TTTTAAGGAAAATAGAGCAAAGAATAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCC
* * ** * *
60589 CAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAACAAATGAAGATCATTACTAGAACCCTTG
66 TAATGAGGAGAATGTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* *
60654 TTTGTCTTATTTGAGGCACGAACTTAGACTTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
131 TTTGTCTCATTTGAGGCACGAACTTAGAC-TTTAC-AAAATTGGTGGGAAGAAAGCCTTTCTTGT
* * * * * * * *
60719 AAAACCAAAGCATCAATATCGTGTATCCTTTTTGAGAAGACTATGTTCATGGTTCCAAATCTTGA
194 GAAACCAAAGCGTCAATATCATGTATCC-TTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * *
60784 AAAGAATGGGGATTAGTATGACTATTCATTTTTGTCTTATGTAAGAGACAAACTTTGATTCTATC
258 AAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATC
* * *
60849 AAAAACGATTGAAAGAAAAGCTTTTTTTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAA
323 AAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAA
** *
60914 GGGAACATGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGTTTGTC
388 GGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTC
* *
60979 ATATTTCAGGGATAAATTTTGA
453 ATATTTAAGGGATGAATTTTGA
* * * * * * *
61001 TTTTTAGGAAAATAAAGCAAAGAATAGATTTCCAAGGAAAAGAAAATCGTCAATATCATTTTTCC
1 TTTTAAGGAAAATAGAGCAAAGAATAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCC
* * *
61066 TAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTTGAATTCATG
66 TAATGAGGAGAATGTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * *
61131 TTTGTCTCATTTGAGGCACGAACTTGGACTTCT-CAAAAATTGGCGGGAAGAAAGCCTTTCTTGC
131 TTTGTCTCATTTGAGGCACGAACTTAGACTT-TAC-AAAATTGGTGGGAAGAAAGCCTTTCTTGT
* * * * *
61195 AAAACCAAAACGTCAATATCGTGTATCCTTATGA-AATAACTATATTTATGGTGCCTAATCCT-A
194 GAAACCAAAGCGTCAATATCATGTATCCTTATGAGAA-GACTATGTTTATGGTGCCTAATCCTGA
* * * * *
61258 AAAAGAATAGGGATTAGTATGACTATTCAAGTTTGTCATATTTAAGAGACAAGCTTTGATTCTAT
258 AAAA-AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTAT
* * * *
61323 CAAAAACAGTGGAAAGAAAAGCTTCTATTGCGATACCAAAGCATCAATGGCATGTATCCTATTGA
322 CAAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATGA
** * * *
61388 AGGGAATGTGTTCTTTCTTCGCAATCTTGAAAAGAATGGAAACTATTATGAGAATCGATGCTTGT
387 AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGT
*
61453 CATATTTAAAGGATGAATTTTGA
452 CATATTTAAGGGATGAATTTTGA
* * * * * **
61476 TTTTAAGGAAAATAGAGCAAAGAATAGATTACCAAGCAAAAGAAAATAAACAATATCATTTGCCC
1 TTTTAAGGAAAATAGAGCAAAGAATAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCC
* * * *
61541 TAATGAGGAGATTGTGTTTGTAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAATCGAT
66 TAATGAGGAGAATGTGTTT-AAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * **
61606 GTTTGTCTCCTTTGAGGCACAAACTTAGACTTTATAAAAATTGGCGGGAAGAAAGCCTTTTTTAC
130 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAATTGGTGGGAAGAAAGCCTTTCTTGT
* * * * * * *
61671 GAAACCAAAGCATCAATTTCATCTATCCTAATGAGATGACTATATTTATGGTGTCTAATCCTGAA
194 GAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * * ** * * *
61736 AATAATGGGGATTAGTATTACTATTTAAGTTTGTCTTATTTTGGAGACAAACTTTGACTCTATCC
259 AAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCA
* * * * * * *
61801 AAAATGGTAGAAAGAAAACCCTTTCTAAT-C-TTGA--AAAGAATCAATGTCATGTATCCTAATA
324 AAAACGGTGGAAAGAAAA-GCTTT-TATTGCGAT-ACCAAAGCATCAATGTCATGTATCCTAATG
*
61862 AAGGGAAT-TCGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTT
386 AAGGGAATGT-GTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTT
* * * *
61926 GTCAAATTTAAGCGAAGAATTTTAA
450 GTCATATTTAAGGGATGAATTTTGA
* * * * * * **
61951 TTTTAAGAAAAATAGCGCAAAGAAAAGATTT-TCATACATAAGAAAATCATAAATATTTTTTATC
1 TTTTAAGGAAAATAGAGCAAAGAATAGATTTCT-ATGCAAAAGAAAATCATCAATATCATTTATC
* * ** * *
62015 CTAATGAGGAGATTGTGTTTATAGTGCCTAATCGCAAAACAAATGAAGATCTTTACTAGAATCAA
65 CTAATGAGGAGAATGTGTTTA-AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * * ** *
62080 TGTTTGTCGCATTTGAGGAATGGAA-TTAAACTTTACCAAAATT-G-GCCAAAAAGAGGCCTTTC
129 TGTTTGTCTCATTTGAGGCA-CGAACTTAGACTTTA-CAAAATTGGTGGGAAGAA-A-GCCTTTC
* * * * * *
62142 TTGTGAAACCAAAGCATTAATATCATGTATCCTAATGGGAAGATTATATTTATGGTGCCTAATCC
190 TTGTGAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * *
62207 AGAAAAGAATAGGGATTAGTATGAGTATTTATGTTTGTCTTATTTAAGAGATAAACTTTGATTCT
255 TGAAAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCT
* * * * *
62272 ATCAAAAATGGTGGAAAGAAATGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAAT
320 ATCAAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAAT
* * * * *
62337 GAAGCGAATGTGTTCTTGGTTCCCAATCTAGAAAAAAATGGAGATTTTTATGAGAATCGATGCTT
385 GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTT
62402 GTCATATTTAAGGGATGAATTTTGA
450 GTCATATTTAAGGGATGAATTTTGA
* * * * * *
62427 TTTTAGGGAAAGTAGGGCATAGAAAAGATTT-TCATGCAAAAAAAAATCATCAATATCATTTATC
1 TTTTAAGGAAAATAGAGCAAAGAATAGATTTCT-ATGCAAAAGAAAATCATCAATATCATTTATC
* * * *
62491 GTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGATTGAAGATCTTTACTAGAATCGA
65 CTAATGAGGAGAATGTGTTTA-AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * * *
62556 TGTTTGTCTCATTTCAGGCAGGAACTTAGACATTACAAAATTTGGTGGGAACAAAGCCTTTCATG
129 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA-TTGGTGGGAAGAAAGCCTTTCTTG
** * * * * *
62621 TGAAACCAAAGCGTCAATATTGTGTATTCTTTTGAGAAGACTATGTTCACGGTGCCTAGTCCTGA
193 TGAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * * * *
62686 AAAAAA-GGTGGATTAGTTTGACTATTTATTTTTGTCTTATTTAAGAGATAAAATTTTATTCTTT
258 AAAAAATGG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTAT
* * * * *
62750 CAAAAACAGTTGAAAGAAAAGCTTTTATTGCTATACCAAAGCATCGATGTCTTGTATCCTAATGA
322 CAAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATGA
*
62815 AGTGG-ATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTG
387 AG-GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
62879 TCATATTTAAGGGATGAATTTTGA
451 TCATATTTAAGGGATGAATTTTGA
* * * * *
62903 TTTT-AGGAAAAATAGAGTAAAGAATAGATTTCCAAGCAAAAGAAAATTATCAATATCATTTTTC
1 TTTTAAGG-AAAATAGAGCAAAGAATAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATC
* * **
62967 CTAATGAGGAGAATGTGTTTAAGTGCCTAATTACAAAATGAATGAAGATCATTCCTAGAATCTTT
65 CTAATGAGGAGAATGTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * *
63032 GTTTTTCTCACTTAAGGCACGAACTTAGACTTTATCGAAATTGGTGGGAAGAAAGCCTTTCTTGT
130 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAATTGGTGGGAAGAAAGCCTTTCTTGT
* * * * * *
63097 TAAATCTAAGCGTCAATATCGTGTCTCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAA
194 GAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * *
63162 AAAAATGGGGATTAGTATGACTATTCAAGTTTGTCTTAGTTT-AGAGACAAACTTTGTTTCTATC
259 AAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTA-TTTAAGAGATAAACTTTGATTCTATC
* * * * * * * **
63226 AAAAACGATGGAAAGAAAACCATTTCTTGCAACACCAAAGCATTAATGTCATGTATCCTAACAAA
323 AAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAA
* * *
63291 GGGAATTTGTTCTTGGTTCCCAA-CTTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTAT
388 GGGAATGTGTTCTTGGTTCCCAATC-TTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGT
* *
63355 CAAATTTAAGGGAAGAATTTTGA
452 CATATTTAAGGGATGAATTTTGA
* * * * * **
63378 TTTTATGGAAAAT--CGCATAATGAAAAAATTT-TCATGCAAAAGAAAATCATTAATATGTTTTT
1 TTTTAAGGAAAATAGAGCA-AA-GAATAGATTTCT-ATGCAAAAGAAAATCATCAATAT-CATTT
* * * *
63440 ATCCTAATGAGGAGAATGTTTTTATAGTGCCTAATCACAAAACGAATAAAGATCTTTACTAGAAT
62 ATCCTAATGAGGAGAATGTGTTTA-AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * * * * ***
63505 -CAGTGTTTGTCGCATTTAAAGCATGAAATTAGACTTTACCAAAATTGATGGGAAAAAAATGTTT
126 CCA-TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAATTGGTGGGAAGAAAGCCTTT
* * ** * *
63569 CTTGTGAAACCAAAGCATCAATATCATGTATCCTAACAAGAAAAATAT-TTCTATGGTGCCTAAT
189 CTTGTGAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTATGTT-TATGGTGCCTAAT
* * * *
63633 CTTGAAAATAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATT
253 CCTGAAAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATT
* * * * * *
63698 CTATCAAAAATGGTTGAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCAATGTCATGTAAACCT
318 CTATCAAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGT-ATCCT
* * * * *
63763 AATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGGAAAGAATGGAGACTG-TATGAGAGTCAATG
382 AATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATG
* * ** *
63827 CTTGCCTTATTTAAGGGAAAAACTTTGA
447 CTTGTCATATTTAAGGGATGAATTTTGA
* ** *
63855 TTTTGAGGAAAATA-AGGCAAAGAAAATATTTTTCT-TGCAAAAGAAAACCATCAATATCATTTA
1 TTTTAAGGAAAATAGA-GCAAAG--AATAGATTTCTATGCAAAAGAAAATCATCAATATCATTTA
* * * *
63918 TCCTACTGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATCACTAGAATCT
63 TCCTAATGAGGAGAATGTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * *
63983 ATGTTTGTTTTATTTG-GGTCACGAACTTAGACTTTACAAAAATTAGTGGGAAGGAAGCCTTTCT
128 ATGTTTGTCTCATTTGAGG-CACGAACTTAGACTTTAC-AAAATTGGTGGGAAGAAAGCCTTTCT
* * ** * * *
64047 TGTGAAACCACAGCGTCAGTATTTTGTATCCTTATGGGAAGACTGTGTTCATGGTGCCTAATCCT
191 TGTGAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * * *
64112 G--AAAAATGTGGACTAGTATGACTATTCATTTTTATCTTATTTAAGAGACAAACTTTAATTCTA
256 GAAAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTA
* * * *
64175 TAAAAAATGGTTGAAGGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATG
321 TCAAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATG
* * * *
64240 AAGAGAATGTGTTATCGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATAAGAATCGATGCTTG
386 AAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
64305 TCATATTTAAGGGATGAATTTTGA
451 TCATATTTAAGGGATGAATTTTGA
** * * * *
64329 TTTTATCGAAAATAGAGCAAAGAATAGATTTCTA-G-GAAA-AAAATCGTCAATGTCATTTATTC
1 TTTTAAGGAAAATAGAGCAAAGAATAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCC
*
64391 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCAT
66 TAATGAGGAGAATGTGTTTA-AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * *
64456 GTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCTTTCATGT
130 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC-AAAATTGGTGGGAAGAAAGCCTTTCTTGT
* * ** * *
64521 GAAACCAAAGTGTCAATATCATGTATCCTTATGAGATGACTATGTTCGTAGTGCCTAAGCCTGAA
194 GAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG--
* * * *
64586 AAAAAAAAGTGGATTAGTATGACTATTTATTTTTGTCTTATTTAAGCA-ATAAACTTTGATTCTA
257 AAAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG-AGATAAACTTTGATTCTA
*
64650 TCAAAAACGGTCGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATG
321 TCAAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATG
* * * *
64715 AAGGGAATGTGTTCTTGGTTCCCAATCTTGGAAATAATGGAGACTGTTGTGAGAATGGATGCTTG
386 AAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
*
64780 TCATATTTAAAGGATGAATTTTGA
451 TCATATTTAAGGGATGAATTTTGA
* * * *
64804 TTTTGAGGAAAATAGAGCAAATAATAGATTTCTAGGCAAAAGAAAATCATCAATATCATTTTTCC
1 TTTTAAGGAAAATAGAGCAAAGAATAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCC
* * * * * * *
64869 TAAT-ATGGAGAATTTGTTTAAGTGCCTACTCATAAAATGAATTAAGATCATCACTAAAAATCTA
66 TAATGA-GGAGAATGTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACT-AGAATCCA
* * * * * *
64933 CGTTT-TCTTATTTAAGGCATGAACCTAGGCTTTACAGAAATTGGTGGGAAGAAAGCCTTTCTTG
129 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA-AAATTGGTGGGAAGAAAGCCTTTCTTG
** * * *
64997 CAAAACCAAAGTGTCAATATCGTGTATCCTTAGGAGAAGACTATGTTTATGGTGCCTAATCCTGA
193 TGAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * * * * * * *
65062 ATAGAGTGGGGATTAGTATGACTATTCAAGTTTGTCATATTCAAGAGAGAAGCTTTGAGGT-TAT
258 AAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGA-TTCTAT
* * *
65126 CAAAAACGGTTGG-AAGAAAAGCTTTTATTGCAATACCAAAGCATTAGTGTCATGTATCCTAATG
322 CAAAAACGG-TGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATG
** * * * *
65190 AAGGGAATGTGTTCTTTCTTCCCAATATTGGAAAGAGTGGAGACTTTTATGAGAATCGATGCTTG
386 AAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
65255 TCATATTTAAGGGATGAATTTTGA
451 TCATATTTAAGGGATGAATTTTGA
* *
65279 TTTTAATGAAAATAGAGCAAAGAATAGATTT-TCAGGCAAAAGAAAATCATCAATATCATTTATC
1 TTTTAAGGAAAATAGAGCAAAGAATAGATTTCT-ATGCAAAAGAAAATCATCAATATCATTTATC
** **
65343 CTAATGAAAAGAACATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
65 CTAATGAGGAGAATGTGTTTA-AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* *
65408 TGTTTGTCTCCA-TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCTTTTC-T
129 TGTTTGTCT-CATTTGAGGCACGAACTTAGACTTTAC-AAAATTGGTGGGAAGAAAGCCTTTCTT
* * * * ** * **
65471 -TGCAACCAAAGCATCAAT-TGCAT-CATCCTAATGAGATA-ACTAAATTTATAGTATCTAATCC
192 GTGAAACCAAAGCGTCAATAT-CATGTATCCTTATGAGA-AGACTATGTTTATGGTGCCTAATCC
* * *
65532 TGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTTAGAGACAAACTTTGATTCT
255 TGAAAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCT
* * * * * *
65597 ATAAAAAATGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTACT
320 ATCAAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAAT
* * * * * * ** *** * *
65662 -AATGGGAATTTGCTCTTGGTTCCTAATCTAGAATAGTATGGAGACTACTGCAAGTATCAATGCT
385 GAA-GGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
* *
65726 TGTCAAATTTAAGGGAAGAATTTTGA
449 TGTCATATTTAAGGGATGAATTTTGA
* * * * * * *
65752 TTTTACGGAAAATAGCGCAAAGAAAAGACTTCCATGCAAAAGAAAATCATCAATAT-TTTTATGC
1 TTTTAAGGAAAATAGAGCAAAGAATAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCC
* * * * * * *
65816 TATTGAGGAGAATTTGTTTAGAGTGCCTAATCATAAAATGATTGAAGATCTTTACTAGAGTCAAT
66 TAATGAGGAGAATGTGTTTA-AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * *
65881 GTTTGTCACATTTGAGACATGAAATTAGACTTTACCAAAATTGGTGGGAAAAAAGCCTTCCTTGT
130 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAATTGGTGGGAAGAAAGCCTTTCTTGT
* * * * * * * *
65946 GAAACCAAGGCATTAATACCATGTGTCCTAATAAGAAGACTATATTTATGGTGCCTAATCCT-AA
194 GAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * * * * * *
66010 AAAGAATGGGGACTAGCATGAGTTTTCATGTCTGCCTTATTTAAGTGATAAACTTGGATTCTATC
259 AAA-AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATC
* * * * *
66075 AAAAACGGTGGAAAG--AA------ATTGCGATGCAAAAACATAAATGTCATGTATCCTATTGAA
323 AAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAA
* * *
66132 GGGAATGTGTTCTTGGTTCTCAATCTTGAAAA-AGATGGAGATTGTTACGAGAATCGATGCTTGT
388 GGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGA-ATGGAGACTGTTATGAGAATCGATGCTTGT
66196 CATATTTAAGGGATGAATTTTGA
452 CATATTTAAGGGATGAATTTTGA
* * *
66219 TTTTTAGGAAAATAGCA-CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
1 TTTTAAGGAAAATAG-AGCAAAGAATAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATC
* * * * * *
66283 TTAATGAGGAGAATGTGTTTAAGCGCCTATTTACAAAATGAATGAAGATCATTACTAGAACCCTT
65 CTAATGAGGAGAATGTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * * * *
66348 ATGTGTCTCATTTGAGGAACGAACTTAGACTGTACAAATATTAGTGGGAGGAAATCCTTTCTTGC
130 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA-ATTGGTGGGAAGAAAGCCTTTCTTGT
* * * * *
66413 GAAACCAAAGTGTGAATATCGTGTGTCCTTATGAGAAGACTATGTTTATGGTGACTAATCCT-AA
194 GAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
*** * *
66477 AAAAATCAAGATTGGTATGATTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCA
259 AAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCA
** ** * * ** * *
66542 AAAACATTTAAAAGAAATGCTTTTCTTATGGTACCAAAGCATCAATGTCATGCATCCTAATGAAG
324 AAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAG
66607 G
389 G
66608 TGTTAGGATC
Statistics
Matches: 6735, Mismatches: 1121, Indels: 271
0.83 0.14 0.03
Matches are distributed among these distances:
466 64 0.01
467 288 0.04
468 26 0.00
470 37 0.01
471 157 0.02
472 128 0.02
473 312 0.05
474 336 0.05
475 2225 0.33
476 1725 0.26
477 819 0.12
478 213 0.03
479 168 0.02
480 101 0.01
481 136 0.02
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (474 bp):
TTTTAAGGAAAATAGAGCAAAGAATAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCC
TAATGAGGAGAATGTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAATTGGTGGGAAGAAAGCCTTTCTTGTGA
AACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
AAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAA
AACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGG
AATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCATA
TTTAAGGGATGAATTTTGA
Found at i:60865 original size:951 final size:949
Alignment explanation
Indices: 58137--66605 Score: 9597
Period size: 951 Copynumber: 8.9 Consensus size: 949
58127 ACCAGTGGAA
* * *
58137 TTGTTTTTAAGGAAAATAGAACAAAGAATAGATTTTCAAGCAAAAGAAAATCATCAATATCATTT
1 TTGTTTTT-AGGAAAATAGAGCAAAGAATAGATTTCCAGGCAAAAGAAAATCATCAATATCATTT
* * * *
58202 TTCGTAATGAGGAGAATTTGTTTAAGTGCCTAATCAAAAAACGAATGAAGATCATTACTAGAACC
65 TTCCTAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * *
58267 CATGTTTGTCTTATTTGTGGCACGAACTTAGACTTTTACAAAAATTGGTGAGAAGAAAGCCTTTC
130 CATGTTTGTCTCATTTGAGGCACGAACTTAGAC-TTTACAGAAATTGGTGGGAAGAAAGCCTTTC
* * * * * *
58332 TTGTG-AAACCAAAGTGTCAATATCGTGTATCCTTTTTGATAAGATTATGTTTATGGAGCCTTAT
194 TTGTGAAAACCAAAGCGTCAATATCGTGTATCC-TTATGAGAAGACTATGTTTATGGTGCCTAAT
* * * * * *
58396 CCTGAAAAGATTGGGAATTAGTAGGACTATTCATGGTTGTCTTATTTATGAGATAAACTTTGATA
258 CCTGAAAAAAATGGG-ATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATT
* * * * *
58461 ATATCAAAAACGGTGGAAAGAATTA-CTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCT
322 CTATCAAAAACGGTGGAAAGAA-AAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCT
* * * * * * * *
58525 AATAAAGGGAATGTGGTCTTGGTTCCCAATCTTGAAAAAAATGGAAATTATTACGAGAAACGATG
386 AATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATG
* * *
58590 CTTGCCATATTTAAGGGATGAATATTGATTTTAA-GAAAAGTAGGGCAAAAAAAAGATTTTCATG
451 CTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA-TAGAGC-AAAAAAAGATTTTCATG
* * *
58654 CAAAAGAAAATCATTAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGTCTAATCACAA
514 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * *
58719 AATGACTGAAGATCATTACTAGAATCCATGTTTCTCTTATTTGAGGCACGAACTTAGACTTTACA
579 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * *** ** * * *
58784 AAATTTGGTGGGAAAAAAGCCTTTCGCACGAAACCAAAGTGTTAATATTATGTATCCTTTTGAGA
644 AAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGA
* * * *
58849 AGACTATGCTCATGGTGCCTAATCTTGAAAAAAATGTGGATTAGTCTGACTATTCATTTTTGTCT
709 AGACTATGTTCATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTCATTTTTGTCT
* * * * * *
58914 TATTTAAGAGACAAACTTTAATTCTGTTAAAAAAGGTGGGAAGAAAAGCTTTTATTGCGATACCA
774 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTATTGCGATACCA
* * * *
58979 AAGCATCAATGTCATGTATCCTAATG-AATGAATGTGTTCTTCGTTCCCAATCTTAAAAAGAATA
839 AAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATG
* * * *
59043 GAGACTGTTATGATAATCAATGCTTTTCCTATTTAAGGAATGAATT
904 GAGACTGTTATGAGAATCAATGCTTGTCATATTTAAGGGATGAATT
* ** *
59089 TTGTTTTTAAGGAAAATACAGCAAAGAATAGATTTGTAGGCAAAAAAAAAATCATCAATATCATT
1 TTGTTTTT-AGGAAAATAGAGCAAAGAATAGATTTCCAGGC-AAAAGAAAATCATCAATATCATT
* * * * *
59154 TTTCCTAATCAGGAGAATATGTTTAAGTGCATAATCACAAAACGAATGAAGATCATTACTAGAAC
64 TTTCCTAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * *
59219 CCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTTATAGAAATTAGTGGGAAGAAAGCCTTT
129 CCATGTTTGTCTCATTTGAGGCACGAACTTAGAC-TTTACAGAAATTGGTGGGAAGAAAGCCTTT
* * * * * * *
59284 CTTG-CAAAACCAAAGCATCAATATCATGTATCCTTTTTGATAAGATTATGTTTATGGAGCCTAA
193 CTTGTGAAAACCAAAGCGTCAATATCGTGTATCC-TTATGAGAAGACTATGTTTATGGTGCCTAA
* * * *
59348 TCTTGAAAAGAATAGGGATTAGTATGACTATTCATGGTTGTCTTATTTATGAGATAAACTTTGAT
257 TCCTGAAAAAAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGAT
** * * * * * * * *
59413 AATATCAAAAACAGTGCAAAGAAATGGTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCGT
321 TCTATCAAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCT
* * * * * *
59478 AATAAAGCGAATGTGGTCTTGGTTCCCAATCTTGAAAAAACAAATGGAGATTGTTATGAGAAACG
386 AATGAAGGGAATGTGTTCTTGGTTCCCAATCTTG--AAAA-GAATGGAGACTGTTATGAGAATCG
* * * * *
59543 ATGCTTGCCATATTTAAGGGATTAATTTTGATTTTGAGGAAAGTAGGGCAAAGAAAAGATTTTCA
448 ATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGAGCAAA-AAAAGATTTTCA
* * * ** * *
59608 TGAAAAAAAAAATCATTAATATCATTTATTGTAATGAGGAGTATATGTTTATAGTGCCTAATCAC
512 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * * * *
59673 AAAATGACTAAAGATCATTACTTGAATCCATGTTTCTTTCATTTGAGGCATGAACTTAGACTTTA
577 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* * * * *
59738 CCAAATTTGGTGGGAAGAAAGCGTTTCATGCGAAACCAAAG-AGTCAATATCATGTATCCTTTTG
642 CAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA-TCAATATCATGTATCCTTATG
* * * *
59802 AGAGGACTATGTTCATGGTGCCTAATCCTAAAAAAAATGTGGATTAGTCTGACTATTCATTTTTG
706 AGAAGACTATGTTCATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTCATTTTTG
* * *
59867 TCTTATTTAAGAGACAAACTTTAATTCTATCTAAAACGGTGGAAAGAAAAGCTTTT-TTAGCGAT
771 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTATT-GCGAT
* * *
59931 ACCAAAGCATCAACGTCATGTATCCTAATGAAAGGAATGTGTTCTTGGTTCCTAGTCTTGAAAAG
835 ACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTCTTGGTTCCCAATCTTGAAAAG
** * * *
59996 GGTGGAGACTGTTTTGAGAATCGATGCTTGTCCTATTTAAGGGATGAATT
900 AATGGAGACTGTTATGAGAATCAATGCTTGTCATATTTAAGGGATGAATT
* *
60046 TTGTTTTTATGGAAAATAGAGCAAGGAACAGATTTCCAGGCAAAAGAAAATCATCAATATCATTT
1 TTGTTTTTA-GGAAAATAGAGCAAAGAATAGATTTCCAGGCAAAAGAAAATCATCAATATCATTT
**
60111 TTCCTAAAAAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
65 TTCCTAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * * * * * *
60176 CAAGTTTATCTCATTTGGGGCACGAACTTAGACTTTATAGAAATTAGTGAGAAGAAAACGTTTCT
130 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAATTGGTGGGAAGAAAGCCTTTCT
* * * * * * *
60241 TG-GAAAACTAAAACATCAATATCGTGTATCCTTTTGAGAAGACTGTGTTCATGGTGCCTAATCT
195 TGTGAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * *
60305 TGAAAAAAATGTAGATTAGTGTGACTATTTATTTTTATCTTATTTAAGAGATAAACTTTGATTCT
260 TGAAAAAAATG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCT
* * * *
60370 ACCAAAAACGGTTGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCAAGTATCCTAAC
324 ATCAAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAAT
* *
60435 GAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTATGAGAATTGATGCTT
389 GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTT
* * * * * *
60500 ATCATATTTAACGAATGAATGTTGATTTTAAGGAAAATAGAGCAAAAAATAGATTTCCAGGCAAA
454 GTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGAGCAAAAAA-AGATTTTCATGCAAA
* * **
60565 AGAAAATCATCAATATCATTT-TCCCAATGAGGAGAATTTGTTTA-AGTGCCTAATCACAAAACA
518 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * *
60628 AATGAAGATCATTACTAGAACCCTTGTTTGTCTTATTTGAGGCACGAACTTAGACTTTTACAAAA
583 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC-TTTACAAAA
* * *
60693 ATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTTTTGAGAAG
647 ATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC-TTATGAGAAG
* * * *
60758 ACTATGTTCATGGTTCCAAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATTTTTGTCTTA
711 ACTATGTTCATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTCATTTTTGTCTTA
* * *
60823 TGTAAGAGACAAACTTTGATTCTATCAAAAACGATTGAAAGAAAAGCTTTTTTTGCGATACCAAA
776 TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTATTGCGATACCAAA
* **
60888 GCATCAATGTCATGTATCCTAATGAAGGGAACATGTTCTTGGTTCCCAATCTTGAAAAGAATGGA
841 GCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA
* * * *
60953 GACTGTTATGAGAATCGATGTTTGTCATATTTCAGGGATAAATT
906 GACTGTTATGAGAATCAATGCTTGTCATATTTAAGGGATGAATT
* *
60997 TTGATTTTTAGGAAAATAAAGCAAAGAATAGATTTCCAAGG-AAAAGAAAATCGTCAATATCATT
1 TTG-TTTTTAGGAAAATAGAGCAAAGAATAGATTTCC-AGGCAAAAGAAAATCATCAATATCATT
*
61061 TTTCCTAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTTGAAT
64 TTTCCTAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * *
61126 TCATGTTTGTCTCATTTGAGGCACGAACTTGGACTTCT-CAAAAATTGGCGGGAAGAAAGCCTTT
129 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT-TACAGAAATTGGTGGGAAGAAAGCCTTT
* * * *
61190 CTTG-CAAAACCAAAACGTCAATATCGTGTATCCTTATGA-AATAACTATATTTATGGTGCCTAA
193 CTTGTGAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAA-GACTATGTTTATGGTGCCTAA
* * * *
61253 TCCT-AAAAAGAATAGGGATTAGTATGACTATTCAAGTTTGTCATATTTAAGAGACAAGCTTTGA
257 TCCTGAAAAA-AAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGA
* * *
61317 TTCTATCAAAAACAGTGGAAAGAAAAGCTTCTATTGCGATACCAAAGCATCAATGGCATGTATCC
320 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCC
* ** * * *
61382 TATTGAAGGGAATGTGTTCTTTCTTCGCAATCTTGAAAAGAATGGAAACTATTATGAGAATCGAT
385 TAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAT
* * ** *
61447 GCTTGTCATATTTAAAGGATGAATTTTGATTTTAAGGAAAATAGAGCAAAGAATAGATTACCAAG
450 GCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGAGCAAA-AAAAGATTTTCATG
* * ** * *
61512 CAAAAGAAAATAAACAATATCATTTGCCCTAATGAGGAGATTGTGTTTGTAGTGCCTAATCACAA
514 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * * * *
61577 AAAGAATGAAGATCATTACTAGAATCGATGTTTGTCTCCTTTGAGGCACAAACTTAGACTTTATA
579 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * * *
61642 AAAATTGGCGGGAAGAAAGCCTTTTTTACGAAACCAAAGCATCAATTTCATCTATCCTAATGAGA
644 AAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGA
* * * * * * * **
61707 TGACTATATTTATGGTGTCTAATCCTGAAAATAATGGGGATTAGTATTACTATTTAAGTTTGTCT
709 AGACTATGTTCATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTCATTTTTGTCT
** * * * * * * *
61772 TATTTTGGAGACAAACTTTGACTCTATCCAAAATGGTAGAAAGAAAACCCTTTCTAAT-C-TTGA
774 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAA-GCTTT-TATTGCGAT-A
*
61835 --AAAGAATCAATGTCATGTATCCTAAT-AAAGGGAAT-TCGTTCTTGGTTCCCAATCTTGAAAA
836 CCAAAGCATCAATGTCATGTATCCTAATGAAA-GGAATGT-GTTCTTGGTTCCCAATCTTGAAAA
* * * * *
61896 GAATGGAGACTGTTACGAGAATCGATGCTTGTCAAATTTAAGCGAAGAATT
899 GAATGGAGACTGTTATGAGAATCAATGCTTGTCATATTTAAGGGATGAATT
* * * * * * ** * * *
61947 TTAATTTTAAGAAAAATAGCGCAAAGAAAAGATTTTCATACATAAGAAAATCATAAATAT-TTTT
1 TT-GTTTTTAGGAAAATAGAGCAAAGAATAGATTTCCAGGCAAAAGAAAATCATCAATATCATTT
* ** *
62011 TATCCTAATGAGGAG-ATTGTGTTTATAGTGCCTAATCGCAAAACAAATGAAGATCTTTACTAGA
65 T-TCCTAATGAGGAGAATT-TGTTTA-AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * * * * ** *
62075 ATCAATGTTTGTCGCATTTGAGGAATGGAA-TTAAACTTTACCA-AAATT-G-GCCAAAAAGAGG
127 ATCCATGTTTGTCTCATTTGAGGCA-CGAACTTAGACTTTA-CAGAAATTGGTGGGAAGAA-A-G
* * * * * * *
62136 CCTTTCTTGTG-AAACCAAAGCATTAATATCATGTATCCTAATGGGAAGATTATATTTATGGTGC
188 CCTTTCTTGTGAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGC
* * * *
62200 CTAATCCAGAAAAGAATAGGGATTAGTATGAGTATTTATGTTTGTCTTATTTAAGAGATAAACTT
253 CTAATCCTGAAAAAAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTT
* * * * *
62265 TGATTCTATCAAAAATGGTGGAAAGAAATGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTA
317 TGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTA
* * * * *
62330 TCCTAATGAAGCGAATGTGTTCTTGGTTCCCAATCTAGAAAAAAATGGAGATTTTTATGAGAATC
382 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATC
* * * *
62395 GATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAGGGAAAGTAGGGCATAGAAAAGATTTTC
447 GATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGAGCA-AAAAAAGATTTTC
* *
62460 ATGCAAAAAAAAATCATCAATATCATTTATCGTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
511 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * *
62525 CAAAATGATTGAAGATCTTTACTAGAATCGATGTTTGTCTCATTTCAGGCAGGAACTTAGACATT
576 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * * * ** * *
62590 ACAAAATTTGGTGGGAACAAAGCCTTTCATGTGAAACCAAAGCGTCAATATTGTGTATTCTTTTG
641 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATG
* * * *
62655 AGAAGACTATGTTCACGGTGCCTAGTCCTGAAAAAAA-GGTGGATTAGTTTGACTATTTATTTTT
706 AGAAGACTATGTTCATGGTGCCTAATCCTGAAAAAAATGG-GGATTAGTATGACTATTCATTTTT
* * * * * *
62719 GTCTTATTTAAGAGATAAAATTTTATTCTTTCAAAAACAGTTGAAAGAAAAGCTTTTATTGCTAT
770 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTATTGCGAT
* * *
62784 ACCAAAGCATCGATGTCTTGTATCCTAATG-AAGTGGATGTGTTCTTGGTTCCCAATCTTGAAAA
835 ACCAAAGCATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTCTTGGTTCCCAATCTTGAAAA
62848 GAATGGAGACTGTTATGAGAATCAATGCTTGTCATATTTAAGGGATGAATT
899 GAATGGAGACTGTTATGAGAATCAATGCTTGTCATATTTAAGGGATGAATT
* * * *
62899 TTGATTTTAGGAAAAATAGAGTAAAGAATAGATTTCCAAGCAAAAGAAAATTATCAATATCATTT
1 TTGTTTTTAGG-AAAATAGAGCAAAGAATAGATTTCCAGGCAAAAGAAAATCATCAATATCATTT
* * *
62964 TTCCTAATGAGGAGAATGTGTTTAAGTGCCTAATTACAAAATGAATGAAGATCATTCCTAGAATC
65 TTCCTAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
** * * *
63029 TTTGTTTTTCTCACTTAAGGCACGAACTTAGACTTTATC-GAAATTGGTGGGAAGAAAGCCTTTC
130 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAGAAATTGGTGGGAAGAAAGCCTTTC
* * * *
63093 TTGT-TAAATCTAAGCGTCAATATCGTGTCTCCTTATGAGAAGACTATGTTTATGGTGCCTAATC
194 TTGTGAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC
* * * *
63157 CAGAAAAAAATGGGGATTAGTATGACTATTCAAGTTTGTCTTAGTTT-AGAGACAAACTTTGTTT
259 CTGAAAAAAAT-GGGATTAGTATGACTATTCATGTTTGTCTTA-TTTAAGAGATAAACTTTGATT
* * * * * * *
63221 CTATCAAAAACGATGGAAAGAAAACCATTTCTTGCAACACCAAAGCATTAATGTCATGTATCCTA
322 CTATCAAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTA
** * *
63286 ACAAAGGGAATTTGTTCTTGGTTCCCAA-CTTTGAAAAGAATGGAGACTGTTACGAGAATCGATG
387 ATGAAGGGAATGTGTTCTTGGTTCCCAATC-TTGAAAAGAATGGAGACTGTTATGAGAATCGATG
* * * * * *
63350 CTTATCAAATTTAAGGGAAGAATTTTGATTTTATGGAAAAT--CGCATAATGAAAAAATTTTCAT
451 CTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGAGCA-AA--AAAAGATTTTCAT
* ** *
63413 GCAAAAGAAAATCATTAATATGTTTTTATCCTAATGAGGAGAATGTTTTTATAGTGCCTAATCAC
513 GCAAAAGAAAATCATCAATAT-CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * * * * * *
63478 AAAACGAATAAAGATCTTTACTAGAAT-CAGTGTTTGTCGCATTTAAAGCATGAAATTAGACTTT
577 AAAATGAATGAAGATCATTACTAGAATCCA-TGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * *** * * **
63542 ACCAAAATTGATGGGAAAAAAATGTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTAACA
641 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATG
* * * * * * *
63607 AGAAAAATAT-TTCTATGGTGCCTAATCTTGAAAATAATAGGGATTAGTATGAGTATTCATGTTT
706 AGAAGACTATGTTC-ATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTCATTTTT
* * * * *
63671 GTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTTGAAAGAAAAGCCTTTCTTGCGAC
770 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTATTGCGAT
* * * * *
63736 ACCAAAGCATCAATGTCATGTAAACCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGGAAA
835 ACCAAAGCATCAATGTCATGT-ATCCTAATGAAAGGAATGTGTTCTTGGTTCCCAATCTTGAAAA
* * * ** *
63801 GAATGGAGACTG-TATGAGAGTCAATGCTTGCCTTATTTAAGGGAAAAACT
899 GAATGGAGACTGTTATGAGAATCAATGCTTGTCATATTTAAGGGATGAATT
* * * * ** *
63851 TTGATTTTGAGGAAAATA-AGGCAAAGAAAATATTTTTCTTGCAAAAGAAAACCATCAATATCAT
1 TTG-TTTTTAGGAAAATAGA-GCAAAGAATAGA-TTTCCAGGCAAAAGAAAATCATCAATATCAT
* * *
63915 TTATCCTACTGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATCACTAGAA
63 TTTTCCTAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * * * * *
63980 TCTATGTTTGTTTTATTTG-GGTCACGAACTTAGACTTTACAAAAATTAGTGGGAAGGAAGCCTT
128 TCCATGTTTGTCTCATTTGAGG-CACGAACTTAGACTTTACAGAAATTGGTGGGAAGAAAGCCTT
* * ** * * *
64044 TCTTGTG-AAACCACAGCGTCAGTATTTTGTATCCTTATGGGAAGACTGTGTTCATGGTGCCTAA
192 TCTTGTGAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAA
* * * * *
64108 TCCTG--AAAAATGTGGACTAGTATGACTATTCATTTTTATCTTATTTAAGAGACAAACTTTAAT
257 TCCTGAAAAAAATG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGAT
* * * *
64171 TCTATAAAAAATGGTTGAAGGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCT
321 TCTATCAAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCT
* * * *
64236 AATGAAGAGAATGTGTTATCGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATAAGAATCGATG
386 AATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATG
** *
64301 CTTGTCATATTTAAGGGATGAATTTTGATTTTATCGAAAATAGAGCAAAGAATAGA-TTTC-TAG
451 CTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGAGCAAA-AAAAGATTTTCAT-G
* * * *
64364 -GAAA-AAAATCGTCAATGTCATTTATTCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
514 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* *
64427 AATGAATGAAGATCATTACTAGAACCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACA
579 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * **
64492 AAAATTAGTGGGAAGAAAGCCTTTCATGTGAAACCAAAGTGTCAATATCATGTATCCTTATGAGA
644 AAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGA
* * * * * * *
64557 TGACTATGTTCGTAGTGCCTAAGCCTGAAAAAAAAAAGTGGATTAGTATGACTATTTATTTTTGT
709 AGACTATGTTCATGGTGCCTAATCCTG--AAAAAAATGGGGATTAGTATGACTATTCATTTTTGT
* *
64622 CTTATTTAAGCA-ATAAACTTTGATTCTATCAAAAACGGTCGAAAGAAAAGCTTTTATTGCGATA
772 CTTATTTAAG-AGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTATTGCGATA
* * *
64686 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGGAAATA
836 CCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGA
* ** *
64751 ATGGAGACTGTTGTGAGAATGGATGCTTGTCATATTTAAAGGATGAATT
901 ATGGAGACTGTTATGAGAATCAATGCTTGTCATATTTAAGGGATGAATT
* * *
64800 TTGATTTTGAGGAAAATAGAGCAAATAATAGATTTCTAGGCAAAAGAAAATCATCAATATCATTT
1 TTG-TTTTTAGGAAAATAGAGCAAAGAATAGATTTCCAGGCAAAAGAAAATCATCAATATCATTT
* * * * *
64865 TTCCTAAT-ATGGAGAATTTGTTTAAGTGCCTACTCATAAAATGAATTAAGATCATCACTAAAAA
65 TTCCTAATGA-GGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACT-AGAA
* * * * * * *
64929 TCTACGTTT-TCTTATTTAAGGCATGAACCTAGGCTTTACAGAAATTGGTGGGAAGAAAGCCTTT
128 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAATTGGTGGGAAGAAAGCCTTT
* * *
64993 CTTG-CAAAACCAAAGTGTCAATATCGTGTATCCTTAGGAGAAGACTATGTTTATGGTGCCTAAT
193 CTTGTGAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT
* * * * * * * * *
65057 CCTGAATAGAGTGGGGATTAGTATGACTATTCAAGTTTGTCATATTCAAGAGAGAAGCTTTGAGG
258 CCTGAAAAAAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGA-T
* * *
65122 T-TATCAAAAACGGTTGG-AAGAAAAGCTTTTATTGCAATACCAAAGCATTAGTGTCATGTATCC
321 TCTATCAAAAACGG-TGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCC
** * * * *
65185 TAATGAAGGGAATGTGTTCTTTCTTCCCAATATTGGAAAGAGTGGAGACTTTTATGAGAATCGAT
385 TAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAT
* * *
65250 GCTTGTCATATTTAAGGGATGAATTTTGATTTTAATGAAAATAGAGCAAAGAATAGATTTTCAGG
450 GCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGAGCAAA-AAAAGATTTTCATG
** **
65315 CAAAAGAAAATCATCAATATCATTTATCCTAATGAAAAGAACATGTTTATAGTGCCTAATCACAA
514 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
*
65380 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCCA-TTGAGGCATGAACTTAGACTTTAC
579 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCT-CATTTGAGGCACGAACTTAGACTTTAC
* * *
65444 AAAAATTGGTGGGAAGAAAGCTTTTCTTGC--AACCAAAGCATCAAT-TGCAT-CATCCTAATGA
643 AAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-CATGTATCCTTATGA
** * * ** * *
65505 GATA-ACTAAATTTATAGTATCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTG
707 GA-AGACTATGTTCATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTCATTTTTG
* * * * * * *
65569 TCTTATTTTAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTTCTTGCGACA
771 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTATTGCGATA
* * * * * * *
65634 CCAAAGCATCAATGTCATGTATCCTACT-AATGGGAATTTGCTCTTGGTTCCTAATCTAGAATAG
836 CCAAAGCATCAATGTCATGTATCCTAATGAA-AGGAATGTGTTCTTGGTTCCCAATCTTGAAAAG
* ** *** * * *
65698 TATGGAGACTACTGCAAGTATCAATGCTTGTCAAATTTAAGGGAAGAATT
900 AATGGAGACTGTTATGAGAATCAATGCTTGTCATATTTAAGGGATGAATT
* * * * *
65748 TTGATTTTACGGAAAATAGCGCAAAGAAAAGACTTCCATGCAAAAGAAAATCATCAATAT--TTT
1 TTGTTTTTA-GGAAAATAGAGCAAAGAATAGATTTCCAGGCAAAAGAAAATCATCAATATCATTT
* * * * * *
65811 TATGCTATTGAGGAGAATTTGTTTAGAGTGCCTAATCATAAAATGATTGAAGATCTTTACTAGAG
65 T-TCCTAATGAGGAGAATTTGTTTA-AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * * * * *
65876 TCAATGTTTGTCACATTTGAGACATGAAATTAGACTTTACCA-AAATTGGTGGGAAAAAAGCCTT
128 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAGAAATTGGTGGGAAGAAAGCCTT
* * * * * * * * * *
65940 CCTTGTG-AAACCAAGGCATTAATACCATGTGTCCTAATAAGAAGACTATATTTATGGTGCCTAA
192 TCTTGTGAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAA
* * * * * * * *
66004 TCCT-AAAAAGAATGGGGACTAGCATGAGTTTTCATGTCTGCCTTATTTAAGTGATAAACTTGGA
257 TCCTGAAAAA-AAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGA
* * * *
66068 TTCTATCAAAAACGGTGGAAAG--AA------ATTGCGATGCAAAAACATAAATGTCATGTATCC
320 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCC
* * * *
66125 TATTGAAGGGAATGTGTTCTTGGTTCTCAATCTTGAAAA-AGATGGAGATTGTTACGAGAATCGA
385 TAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGA-ATGGAGACTGTTATGAGAATCGA
* *
66189 TGCTTGTCATATTTAAGGGATGAATTTTGATTTTTAGGAAAATAGCA-CAAAGAAAAGATTTCCA
449 TGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAG-AGCAAA-AAAAGATTTTCA
* * * *
66253 TGCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTA-AGCGCCTATTTAC
512 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * * * *
66317 AAAATGAATGAAGATCATTACTAGAACCCTTATGTGTCTCATTTGAGGAACGAACTTAGACTGTA
577 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* * * * ** * * *
66382 CAAATATTAGTGGGAGGAAATCCTTTCTTGCGAAACCAAAGTGTGAATATCGTGTGTCCTTATGA
642 CAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGA
* * *** * * *
66447 GAAGACTATGTTTATGGTGACTAATCCT-AAAAAAATCAAGATTGGTATGATTATTCATGTTTGT
707 GAAGACTATGTTCATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTCATTTTTGT
* ** * * * ** *
66511 CTTATTTAAGAGATAAACTTTGATTCTATCAAAAACATTTAAAAGAAATGCTTTTCTTATGGTAC
772 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTATTGCGATAC
*
66576 CAAAGCATCAATGTCATGCATCCTAATGAA
837 CAAAGCATCAATGTCATGTATCCTAATGAA
66606 GGTGTTAGGA
Statistics
Matches: 6401, Mismatches: 987, Indels: 268
0.84 0.13 0.04
Matches are distributed among these distances:
938 2 0.00
939 92 0.01
940 182 0.03
941 122 0.02
942 32 0.00
946 6 0.00
947 204 0.03
948 655 0.10
949 267 0.04
950 505 0.08
951 2045 0.32
952 630 0.10
953 815 0.13
954 167 0.03
955 65 0.01
956 503 0.08
957 109 0.02
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (949 bp):
TTGTTTTTAGGAAAATAGAGCAAAGAATAGATTTCCAGGCAAAAGAAAATCATCAATATCATTTT
TCCTAATGAGGAGAATTTGTTTAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAGAAATTGGTGGGAAGAAAGCCTTTCTT
GTGAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
GAAAAAAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTAT
CAAAAACGGTGGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATGA
AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGT
CATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGAGCAAAAAAAGATTTTCATGCAAAAGA
AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTAT
GTTCATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTCATTTTTGTCTTATTTAA
GAGACAAACTTTGATTCTATCAAAAACGGTTGAAAGAAAAGCTTTTATTGCGATACCAAAGCATC
AATGTCATGTATCCTAATGAAAGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTG
TTATGAGAATCAATGCTTGTCATATTTAAGGGATGAATT
Found at i:62370 original size:159 final size:156
Alignment explanation
Indices: 58399--65694 Score: 1230
Period size: 159 Copynumber: 46.0 Consensus size: 156
58389 GCCTTATCCT
* * ** * * * *
58399 GAAAAGATTGGGAATTAGTAGGACTATTCATGGTTGTCTTATTTATGAGATAAACTTTGATAATA
1 GAAAAGAATGGG-ATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGAT-TTA
* * * * *
58464 TCAAAAACGGTGGAAAGAATTA-CTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCCTAAT
64 TCAAAAATGGTGGAAAGAA-AAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAAT
* * * * * *
58528 AAAGGGAATGTGGTCTTGGTTCCCAATCTT
127 GAAGAGAATGTGTTCTTGGTGCCTAATCTA
* * * * * * * * * * *
58558 GAAAAAAATGGAAATTATTACGAGAAACGATGCTTGCCATATTTAAGGGATGAA-TATTGATTT-
1 GAAAAGAATGG-GATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACT-TTGATTTA
* * * * * ** * * * *
58621 TAAGAAAAGTAGG-GCAAAAAAAAGATTTTCATGCAAAAGAAAATCATTAATATCATTTATCATA
64 TCA-AAAA-T-GGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTA
* * *
58685 ATGAGGAGAATGTGTT-TATAGTGTCTAATC-A
125 ATGAAGAGAATGTGTTCT-TGGTGCCTAATCTA
* * * * * * * ** *
58716 CAAAATGACTGAAGATCATTACT-AGAATCCATGTTTCTCTTATTTGAG-GCACGAACTTAGACT
1 GAAAA-GAATG-GGATTAGTA-TGAGAATCCATGTTTGTCTTATTTAAGAG-ATAAACTTTGA-T
* * * *** ** * *
58779 TTA-CAAAATTTGGTGGGAA-AAAAGCCTTTCGCACGAAACCAAAGTGTTAATATTATGTATCCT
61 TTATCAAAA-ATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCT
** * * * * *
58842 TTTG-AGAAGACTATGCTCATGGTGCCTAATCTT
124 AATGAAG-AGAATGTGTTCTTGGTGCCTAATCTA
* * ** * * * * *
58875 GAAAAAAATGTGGATTAGTCTGACTATTCATTTTTGTCTTATTTAAGAGACAAACTTTAATTCTG
1 GAAAAGAATG-GGATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGATT-TA
* * * * * *
58940 TTAAAAAAGGTGGGAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATG
64 TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAATG
* * * *
59005 AA-TGAATGTGTTCTTCGTTCCCAATCTTA
128 AAGAGAATGTGTTCTTGGTGCCTAATC-TA
* * * * * * *
59034 -AAAAGAATAGAGACT-GTTATGATAATCAATGCTTT-TCCTATTTAAG-GAATGAATTTTG-TT
1 GAAAAGAAT-GGGATTAG-TATGAGAATCCATG-TTTGTCTTATTTAAGAG-ATAAACTTTGATT
* * *** * * * ** ** * * *
59094 TTTAAGGAAAATACAGCAAAGAATAGATTTGT-AGGCAAAAAAAAAATCATCAATATCATTTTTC
62 TATCA--AAAATGGTGGAAAGAAAAGCTTT-TCTTGC--AAACCAAAGCATCAATATCATGTATC
* * * ** *
59158 CTAATCAGGAGAATATGTT-TAAGTGCATAATC-A
122 CTAATGAAGAGAATGTGTTCTTGGTGCCTAATCTA
* * * * * * ** *
59191 CAAAACGAATGAAGATCATTACT-AGAACCCATGTTTGTCTTATTTGAG-GCACGAACTTAGACT
1 GAAAA-GAATG-GGATTAGTA-TGAGAATCCATGTTTGTCTTATTTAAGAG-ATAAACTTTGA--
* * * *
59254 TTTAT-AGAAATTAGTGGGAAG-AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCC
60 TTTATCA-AAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCC
** * * * *
59317 TTTTTGATA-AGATTATGTT-TATGGAGCCTAATCTT
123 -TAATGA-AGAGAATGTGTTCT-TGGTGCCTAATCTA
** * * * *
59352 GAAAAGAATAGGGATTAGTATGACTATTCATGGTTGTCTTATTTATGAGATAAACTTTGATAATA
1 GAAAAGAAT-GGGATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGAT-TTA
** * * * * * * * *
59417 TCAAAAACAGTGCAAAGAAATGGTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATCGTAATA
64 TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAATG
* * * *
59482 AAGCGAATGTGGTCTTGGTTCCCAATCTTGA
128 AAGAGAATGTGTTCTTGGTGCCTAATC-T-A
* * * * * * * * * *
59513 AAAAACAAATGGAGATT-GTTATGAGAAACGATGCTTGCCATATTTAAGGGATTAATTTTGATTT
1 GAAAA-GAATGG-GATTAG-TATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGATTT
* * * * * * ** * * * **
59577 -TGAGGAAAGTAGG-GCAAAGAAAAGATTTTCATGAAAAAAAAAATCATTAATATCATTTATTGT
63 ATCA--AAAAT-GGTGGAAAGAAAAGCTTTTCTTG-CAAACCAAAGCATCAATATCATGTATCCT
* * * *
59640 AATGAGGAGTATATGTT-TATAGTGCCTAATC-A
124 AATGAAGAGAATGTGTTCT-TGGTGCCTAATCTA
* * ** * * * * * * *
59672 CAAAATGACTAAAGATCATTACT-TGAATCCATGTTTCT-TTCATTTGAG-GCATGAACTTAGAC
1 GAAAA-GAAT-GGGATTAGTA-TGAGAATCCATGTTTGTCTT-ATTTAAGAG-ATAAACTTTGA-
* ** * * *
59734 TTTACCAAATTTGGTGGGAAG-AAAGCGTTTCATGCGAAACCAAAG-AGTCAATATCATGTATCC
60 TTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCA-TCAATATCATGTATCC
** * * *
59797 TTTTG-AGAGGACTATGTTCATGGTGCCTAATCCTA
123 TAATGAAGA-GAATGTGTTCTTGGTGCCTAAT-CTA
* * ** * * * *
59832 -AAAAAAATGTGGATTAGTCTGACTATTCATTTTTGTCTTATTTAAGAGACAAACTTTAATTCTA
1 GAAAAGAATG-GGATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGATT-TA
* * * **
59896 TCTAAAACGGTGGAAAGAAAAGCTTTT-TTAGCGATACCAAAGCATCAACGTCATGTATCCTAAT
64 TCAAAAATGGTGGAAAGAAAAGCTTTTCTT-GC-AAACCAAAGCATCAATATCATGTATCCTAAT
* * *
59960 GAA-AGGAATGTGTTCTTGGTTCCTAGTCTT
127 GAAGA-GAATGTGTTCTTGGTGCCTAATCTA
** * * * * * * * * *
59990 GAAAAGGGTGGAGACT-GTTTTGAGAATCGATGCTTGTCCTATTTAAGGGATGAATTTTGTTTTT
1 GAAAAGAATGG-GATTAG-TATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTG-ATTT
** * * * * * * * ** ** * * *
60054 ATGGAAAATAGAGCAAGGAACAGATTTCCAGGCAAAAGAAAATCATCAATATCATTTTTCCTAA-
63 ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAAT
* * **
60118 AAAGGAGAATTTGTT-TAAGTGCCTAATC-A
127 GAA-GAGAATGTGTTCTTGGTGCCTAATCTA
* * * * * * * * * ** *
60147 CAAAATGAATGAAGATCATTACT-AGAATCCAAGTTTATCTCATTT-GGGGCACGAACTTAGACT
1 GAAAA-GAATG-GGATTAGTA-TGAGAATCCATGTTTGTCTTATTTAAGAG-ATAAACTTTGA-T
* * * * * * *
60210 TTAT-AGAAATTAGT-GAGAAGAAAA-CGTTTCTTGGAAAACTAAAACATCAATATCGTGTATCC
61 TTATCA-AAAATGGTGGA-AAGAAAAGCTTTTCTT-GCAAACCAAAGCATCAATATCATGTATCC
** * * *
60272 TTTTG-AGAAGACTGTGTTCATGGTGCCTAATCTT
123 TAATGAAG-AGAATGTGTTCTTGGTGCCTAATCTA
* * * ** ** * *
60306 GAAAAAAATGTAGATTAGTGTGACTATTTATTTTTATCTTATTTAAGAGATAAACTTTGATTCTA
1 GAAAAGAATG-GGATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGATT-TA
* * * * * * * *
60371 CCAAAAACGGTTGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCAAGTATCCTAACG
64 TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAATG
* * *
60436 AAGGGAATGTGTTCTTGGTTCCTAATCTT
128 AAGAGAATGTGTTCTTGGTGCCTAATCTA
* ** * * * *
60465 GAAAAGAATGGAGACT-GTTATGAGAATTGATGCTTATCATATTTAACGA-ATGAA-TGTTGATT
1 GAAAAGAATGG-GATTAG-TATGAGAATCCATGTTTGTCTTATTTAA-GAGATAAACT-TTGATT
* * * * * * ** ** * *
60527 T-TAAGGAAAATAGAGCAAA-AAATAGATTTCCAGGCAAAAGAAAATCATCAATATCAT-TTTCC
62 TATCA--AAAATGGTGGAAAGAAA-AGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCC
* * * **
60589 CAATGAGGAGAATTTGTT-TAAGTGCCTAATC-A
123 TAATGAAGAGAATGTGTTCTTGGTGCCTAATCTA
* * * * * * * * ** *
60621 CAAAACAAATGAAGATCATTACT-AGAACCCTTGTTTGTCTTATTTGAG-GCACGAACTTAGACT
1 GAAAA-GAATG-GGATTAGTA-TGAGAATCCATGTTTGTCTTATTTAAGAG-ATAAACTTTGA-T
* * *
60684 TT-TACAAAAATTGGTGGGAAG-AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCC
61 TTAT-CAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCC
** * * * * * *
60747 TTTTTG-AGAAGACTATGTTCATGGTTCCAAATCTT
123 -TAATGAAG-AGAATGTGTTCTTGGTGCCTAATCTA
** * * * *
60782 GAAAAGAATGGGGATTAGTATGACTATTCATTTTTGTCTTATGTAAGAGACAAACTTTGATTCTA
1 GAAAAGAAT-GGGATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGATT-TA
* * * * * *
60847 TCAAAAACGATTGAAAGAAAAGCTTTTTTTGCGATACCAAAGCATCAATGTCATGTATCCTAATG
64 TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAATG
* ** * * *
60912 AAGGGAACATGTTCTTGGTTCCCAATCTT
128 AAGAGAATGTGTTCTTGGTGCCTAATCTA
* * * * * *
60941 GAAAAGAATGGAGACT-GTTATGAGAATCGATGTTTGTCATATTTCAGGGATAAATTTTGATTT-
1 GAAAAGAATGG-GATTAG-TATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGATTTA
* *** * * * * ** * ** * * * *
61004 TTAGGAAAATAAAGCAAAGAATAGATTTCCAAGGAAAAGAAAATCGTCAATATCATTTTTCCTAA
64 TCA--AAAATGGTGGAAAGAAAAGCTTTTC-TTGCAAACCAAAGCATCAATATCATGTATCCTAA
* * **
61069 TGAGGAGAATTTGTT-TAAGTGCCTAATC-A
126 TGAAGAGAATGTGTTCTTGGTGCCTAATCTA
* * * * * * * * ** * *
61098 CAAAATGAATGAAGATCATTACT-TGAATTCATGTTTGTCTCATTTGAG-GCACGAACTTGGACT
1 GAAAA-GAATG-GGATTAGTA-TGAGAATCCATGTTTGTCTTATTTAAGAG-ATAAACTTTGATT
* * * * * * * *
61161 TCTCAAAAATTGGCGGGAAG-AAAGCCTTTCTTGCAAAACCAAAACGTCAATATCGTGTATCCTT
62 TATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTA
* * *
61225 ATGAA-ATAACTATATT-TATGGTGCCTAATCCTA
125 ATGAAGAGAA-TGTGTTCT-TGGTGCCTAAT-CTA
** * * * * *
61258 -AAAAGAATAGGGATTAGTATGACTATTCAAGTTTGTCATATTTAAGAGACAAGCTTTGATTCTA
1 GAAAAGAAT-GGGATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGATT-TA
** * * * ** *
61322 TCAAAAACAGTGGAAAGAAAAGCTTCTATTGCGATACCAAAGCATCAATGGCATGTATCCTATTG
64 TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAATG
* ** * *
61387 AAGGGAATGTGTTCTTTCTTCGC-AATCTT
128 AAGAGAATGTGTTCTTGGTGC-CTAATCTA
* * * * * * * *
61416 GAAAAGAATGGAAACTATTATGAGAATCGATGCTTGTCATATTTAA-AGGATGAATTTTGATTT-
1 GAAAAGAATGG-GATTAGTATGAGAATCCATGTTTGTCTTATTTAAGA-GATAAACTTTGATTTA
* * * * * * ** ** ** ** * * **
61479 TAAGGAAAATAGAGCAAAGAATAGATTACCAAGCAAAAGAAAATAAACAATATCATTTGCCCTAA
64 TCA--AAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAA
* * *
61544 TGAGGAGATTGTGTT-TGTAGTGCCTAATC-A
126 TGAAGAGAATGTGTTCT-TGGTGCCTAATCTA
* * * * * ** * * *
61574 CAAAAAGAATGAAGATCATTACT-AGAATCGATGTTTGTCTCCTTTGAG-GCACAAACTTAGACT
1 -GAAAAGAATG-GGATTAGTA-TGAGAATCCATGTTTGTCTTATTTAAGAG-ATAAACTTTGA-T
* * * * *
61637 TTAT-AAAAATTGGCGGGAAG-AAAGCCTTTT-TTACGAAACCAAAGCATCAATTTCATCTATCC
61 TTATCAAAAA-TGGTGGAAAGAAAAG-CTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCC
* * * *
61699 TAATG-AGATGACTATATT-TATGGTGTCTAATCCT-
123 TAATGAAGA-GAATGTGTTCT-TGGTGCCTAAT-CTA
* * ** ** * ** * *
61733 GAAAATAATGGGGATTAGTATTACTATTTAAGTTTGTCTTATTTTGGAGACAAACTTTGACTCTA
1 GAAAAGAAT-GGGATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGA-TTTA
* * * * * * * *
61798 TCCAAAATGGTAGAAAGAAAACCCTTTC-T--AATCTTGAAAAGAATCAATGTCATGTATCCTAA
64 TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAAC---CAAAGCATCAATATCATGTATCCTAA
* * * * *
61860 TAAAGGGAAT-TCGTTCTTGGTTCCCAATCTT
126 TGAAGAGAATGT-GTTCTTGGTGCCTAATCTA
* * * * ** * * *
61891 GAAAAGAATGGAGACT-GTTACGAGAATCGATGCTTGTCAAATTTAAGCGA-AGAATTTTAATTT
1 GAAAAGAATGG-GATTAG-TATGAGAATCCATGTTTGTCTTATTTAAGAGATA-AACTTTGA-TT
** * * * * * * ** * * ** *
61954 TAAGAAAAATAGCGCAAAGAAAAGATTTTCATACATAAGAAAATCATAAATATTTTTTATCCTAA
62 TATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCA-AACCAAAGCATCAATATCATGTATCCTAA
* * *
62019 TGAGGAGATTGTGTT-TATAGTGCCTAATC--
126 TGAAGAGAATGTGTTCT-TGGTGCCTAATCTA
* * * * ** * * **
62048 GCAAAACAAATGAAGATCT-TTACT-AGAATCAATGTTTGTCGCATTTGAG-GAATGGAA-TTAA
1 G-AAAA-GAATG-GGAT-TAGTA-TGAGAATCCATGTTTGTCTTATTTAAGAG-AT-AAACTTTG
* * ** * * * *
62109 ACTTTACCAAAATTGG-CCAAA-AAGAGGCCTTTCTTGTGAAACCAAAGCATTAATATCATGTAT
59 A-TTTATCAAAAATGGTGGAAAGAA-AAGCTTTTCTTG-CAAACCAAAGCATCAATATCATGTAT
** * * *
62172 CCTAATGGGAAGATTATAT-TT-ATGGTGCCTAATCCA
121 CCTAAT--GAAGAGAATGTGTTCTTGGTGCCTAATCTA
* **
62208 GAAAAGAATAGGGATTAGTATGAGTATTTATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTA
1 GAAAAGAAT-GGGATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGATT-TA
* *
62273 TCAAAAATGGTGGAAAGAAATGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATG
64 TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAA-ACCAAAGCATCAATATCATGTATCCTAATG
* * *
62338 AAGCGAATGTGTTCTTGGTTCCCAATCTA
128 AAGAGAATGTGTTCTTGGTGCCTAATCTA
* ** * * * * * *
62367 GAAAAAAATGGAGATTTTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTA
1 GAAAAGAATGG-GATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGA-TTTA
*** * * * * * ** * * *
62432 GGGAAAGTAGG-GCATAGAAAAGATTTTCATGCAAAAAAAAATCATCAATATCATTTATCGTAAT
64 TCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAAT
* *
62496 GAGGAGAATGTGTT-TATAGTGCCTAATC-A
127 GAAGAGAATGTGTTCT-TGGTGCCTAATCTA
* * * * * * * ** *
62525 CAAAATGATTGAAGATCT-TTACT-AGAATCGATGTTTGTCTCATTTCAG-GCAGGAACTTAGAC
1 GAAAA-GAATG-GGAT-TAGTA-TGAGAATCCATGTTTGTCTTATTTAAGAG-ATAAACTTTGA-
* * * * * * ** *
62587 ATTA-CAAAATTTGGTGGGAA-CAAAGCCTTTCATGTG-AAACCAAAGCGTCAATATTGTGTATT
60 TTTATCAAAA-ATGGTGGAAAGAAAAGCTTTTC-T-TGCAAACCAAAGCATCAATATCATGTATC
** * * ** *
62649 CTTTTG-AGAAGACTATGTTCACGGTGCCTAGTCCT-
122 CTAATGAAG-AGAATGTGTTCTTGGTGCCTAAT-CTA
* * * ** ** * * * *
62684 GAAAAAAAGGTGGATTAGTTTGACTATTTATTTTTGTCTTATTTAAGAGATAAAATTTTATTCTT
1 GAAAAGAATG-GGATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGATT-TA
** * * * * * *
62749 TCAAAAACAGTTGAAAGAAAAGCTTTTATTGCTATACCAAAGCATCGATGTCTTGTATCCTAATG
64 TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAATG
* * * * *
62814 AAGTGGATGTGTTCTTGGTTCCCAATCTT
128 AAGAGAATGTGTTCTTGGTGCCTAATCTA
* * * * * * *
62843 GAAAAGAATGGAGACT-GTTATGAGAATCAATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
1 GAAAAGAATGG-GATTAG-TATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGA-TTT
** * * * * * * ** ** ** * *
62907 AGGAAAAATAGAGTAAAGAATAGATTTCCAAGCAAAAGAAAATTATCAATATCATTTTTCCTAAT
63 ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAAT
* **
62972 GAGGAGAATGTGTT-TAAGTGCCTAAT-TA
127 GAAGAGAATGTGTTCTTGGTGCCTAATCTA
* * * * * ** * * * ** *
63000 CAAAATGAATGAAGATCATTCCT-AGAATCTTTGTTTTTCTCACTTAAG-GCACGAACTTAGACT
1 GAAAA-GAATG-GGATTAGT-ATGAGAATCCATGTTTGTCTTATTTAAGAG-ATAAACTTTGA-T
* * * * * * * * * * *
63063 TTATCGAAATTGGTGGGAAG-AAAGCCTTTCTTGTTAAATCTAAGCGTCAATATCGTGTCTCCTT
61 TTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTG-CAAACCAAAGCATCAATATCATGTATCCTA
* * *
63127 ATG-AGAAGACTATGTT-TATGGTGCCTAATCCA
125 ATGAAG-AGAATGTGTTCT-TGGTGCCTAATCTA
* ** * * * *
63159 GAAAAAAATGGGGATTAGTATGACTATTCAAGTTTGTCTTAGTTT-AGAGACAAACTTTGTTTCT
1 GAAAAGAAT-GGGATTAGTATGAGAATCCATGTTTGTCTTA-TTTAAGAGATAAACTTTGATT-T
* * * * * * *
63223 ATCAAAAACGATGGAAAGAAAACCATTTCTTGCAACACCAAAGCATTAATGTCATGTATCCTAAC
63 ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAA-ACCAAAGCATCAATATCATGTATCCTAAT
* * * * * *
63288 AAAGGGAATTTGTTCTTGGTTCCCAA-CTTT
127 GAAGAGAATGTGTTCTTGGTGCCTAATC-TA
* * * * * ** * *
63318 GAAAAGAATGGAGACT-GTTACGAGAATCGATGCTTATCAAATTTAAGGGA-AGAATTTTGATTT
1 GAAAAGAATGG-GATTAG-TATGAGAATCCATGTTTGTCTTATTTAAGAGATA-AACTTTGA-TT
** * *** * ** * ** * * ** *
63381 TATGGAAAATCGCATAATGAAAAAATTTTCATGCAAAAGAAAATCATTAATATGTTTTTATCCTA
62 TATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATAT-CATGTATCCTA
* * *
63446 ATGAGGAGAATGT-TTTTATAGTGCCTAATC-A
125 ATGAAGAGAATGTGTTCT-TGGTGCCTAATCTA
* ** * ** *
63477 CAAAACGAATAAAGATCT-TTACT-AGAAT-CAGTGTTTGTCGCATTTAA-AGCATGAAA-TTAG
1 GAAAA-GAAT-GGGAT-TAGTA-TGAGAATCCA-TGTTTGTCTTATTTAAGAG-AT-AAACTTTG
* * * *
63537 ACTTTACCAAAATTGATGGGAAA-AAAA--TGTTTCTTGTGAAACCAAAGCATCAATATCATGTA
59 A-TTTATCAAAAATGGT-GGAAAGAAAAGCT-TTTCTTG-CAAACCAAAGCATCAATATCATGTA
* * * *
63599 TCCTAA-CAAGAAAAATAT-TTCTATGGTGCCTAATCTT
120 TCCTAATGAAG-AGAATGTGTTCT-TGGTGCCTAATCTA
* * *
63636 GAAAATAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTA
1 GAAAAGAAT-GGGATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGATT-TA
* * * * *
63701 TCAAAAATGGTTGAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCAATGTCATGTAAACCTAAT
64 TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGT-ATCCTAAT
* * * *
63766 GAAGGGAATGTGTTTTTGGTTCCTAATCTT
127 GAAGAGAATGTGTTCTTGGTGCCTAATCTA
* * * * * * * *
63796 GGAAAGAATGGAGACT-GTATGAGAGTCAATGCTTGCCTTATTTAAGGGAAAAACTTTGATTT-T
1 GAAAAGAATGG-GATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGATTTAT
* * * ** ** * *
63859 GAGGAAAATAAG-GCAAAGAAAATATTTTTCTTGCAAAAGAAAACCATCAATATCATTTATCCTA
65 CA--AAAAT-GGTGGAAAGAAAA-GCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTA
* * * **
63923 CTGAGGAGAATTTGTT-TAAGTGCCTAATC-A
125 ATGAAGAGAATGTGTTCTTGGTGCCTAATCTA
* * * * * ** ** ** *
63953 CAAAATGAATGAAGATCA-TCACT-AGAATCTATGTTTGTTTTATTTGGGTCACGAACTTAGACT
1 GAAAA-GAATG-GGATTAGT-A-TGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGA-T
* * * * * * * * **
64016 TTA-CAAAAATTAGTGGGAAG-GAAGCCTTTCTTGTGAAACCACAGCGTCAGTATTTTGTATCCT
61 TTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTG-CAAACCAAAGCATCAATATCATGTATCCT
* * * *
64079 TATG-GGAAGACTGTGTTCATGGTGCCTAATCCT-
124 AATGAAG-AGAATGTGTTCTTGGTGCCTAAT-CTA
* ** * * * * *
64112 G-AAA-AATGTGGACTAGTATGACTATTCATTTTTATCTTATTTAAGAGACAAACTTTAATTCTA
1 GAAAAGAATG-GGATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGATT-TA
* * * * * *
64175 TAAAAAATGGTTGAAGGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAATG
64 TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAATG
* * * * *
64240 AAGAGAATGTGTTATCGGTTCCCAATCTT
128 AAGAGAATGTGTTCTTGGTGCCTAATCTA
* * * * * * * *
64269 GAAAAGAATGGAGACT-GTTATAAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
1 GAAAAGAATGG-GATTAG-TATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGA-TTT
* * * * * * * * * * * * * *
64333 ATCGAAAATAGAGCAAAGAATAG-ATTTCTAGGAAA-AAAATCGTCAATGTCATTTATTCTAATG
63 ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAACCAAAGCATCAATATCATGTATCCTAATG
* *
64396 AGGAGAATGTGTT-TATAGTGCCTAATC-A
128 AAGAGAATGTGTTCT-TGGTGCCTAATCTA
* * * * * * ** *
64424 CAAAATGAATGAAGATCATTACT-AGAACCCATGTTTGTCTTATTTGAG-GCACGAACTTAGACT
1 GAAAA-GAATG-GGATTAGTA-TGAGAATCCATGTTTGTCTTATTTAAGAG-ATAAACTTTGA-T
* * * **
64487 TTA-CAAAAATTAGTGGGAAG-AAAGCCTTTCATGTG-AAACCAAAGTGTCAATATCATGTATCC
61 TTATCAAAAA-TGGTGGAAAGAAAAGCTTTTC-T-TGCAAACCAAAGCATCAATATCATGTATCC
* * * * * *
64549 TTATG-AGATGACTATGTTCGTAGTGCCTAAGCCTGA
123 TAATGAAGA-GAATGTGTTCTTGGTGCCTAA-TCT-A
* * * ** ** *
64585 AAAAAAAAAGTGGATTAGTATGACTATTTATTTTTGTCTTATTTAAGCA-ATAAACTTTGATTCT
1 GAAAAGAATG-GGATTAGTATGAGAATCCATGTTTGTCTTATTTAAG-AGATAAACTTTGATT-T
* * * * *
64649 ATCAAAAACGGTCGAAAGAAAAGCTTTTATTGCGATACCAAAGCATCAATGTCATGTATCCTAAT
63 ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAAT
* * * *
64714 GAAGGGAATGTGTTCTTGGTTCCCAATCTT
127 GAAGAGAATGTGTTCTTGGTGCCTAATCTA
* * * * ** * * * *
64744 GGAAATAATGGAGACT-GTTGTGAGAATGGATGCTTGTCATATTTAA-AGGATGAATTTTGATTT
1 GAAAAGAATGG-GATTAG-TATGAGAATCCATGTTTGTCTTATTTAAGA-GATAAACTTTGATTT
* * * * * * * * ** * * *
64807 -TGAGGAAAATAGAGCAAATAATAG-ATTTCTAGGCAAAAGAAAATCATCAATATCATTTTTCCT
63 ATCA--AAAATGGTGGAAAGAAAAGCTTTTCT-TGC-AAACCAAAGCATCAATATCATGTATCCT
* * ** *
64870 AAT-ATGGAGAATTTGTT-TAAGTGCCTACTCATA
124 AATGA-AGAGAATGTGTTCTTGGTGCCTAATC-TA
* ** * * * * * * ** *
64903 -AAATGAATTAAGATCA-TCACTAAAAATCTACGTTT-TCTTATTTAAG-GCATGAACCTAGGCT
1 GAAAAGAA-TGGGATTAGT-A-TGAGAATCCATGTTTGTCTTATTTAAGAG-AT-AAACTTTGAT
* * * ** *
64964 TTA-CAGAAATTGGTGGGAAG-AAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCT
61 TTATCA-AAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCT
* * * *
65027 TA-GGAGAAGACTATGTT-TATGGTGCCTAATCCT-
124 AATGAAG-AGAATGTGTTCT-TGGTGCCTAAT-CTA
* * ** * * * * * * *
65060 GAATAGAGTGGGGATTAGTATGACTATTCAAGTTTGTCATATTCAAGAGAGAAGCTTTGAGGTTA
1 GAAAAGAAT-GGGATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGA-TTTA
* * * * *
65125 TCAAAAACGGTTGG-AAGAAAAGCTTTTATTGCAATACCAAAGCATTAGTGTCATGTATCCTAAT
64 TCAAAAATGG-TGGAAAGAAAAGCTTTTCTTGCAA-ACCAAAGCATCAATATCATGTATCCTAAT
* ** * * * *
65189 GAAGGGAATGTGTTCTTTCTTCCCAATATT
127 GAAGAGAATGTGTTCTTGGTGCCTAATCTA
* * * * * * * * *
65219 GGAAAGAGTGGAGACTT-TTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
1 GAAAAGAATGG-GA-TTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGA-TTT
* * * * * * ** ** * *
65283 AAT-GAAAATAGAGCAAAGAATAGATTTTCAGGCAAAAGAAAATCATCAATATCATTTATCCTAA
63 -ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAA
* ** *
65347 TGAAAAGAACATGTT-TATAGTGCCTAATC-A
126 TGAAGAGAATGTGTTCT-TGGTGCCTAATCTA
* * * * * * * *
65377 CAAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCCA-TTGAG-GCATGAACTTAGAC
1 GAAAA-GAATG-GGATTAGTA-TGAGAATCCATGTTTGTCT-TATTTAAGAG-ATAAACTTTGA-
* *
65439 TTTA-CAAAAATTGGTGGGAAG-AAAGCTTTTCTTGC-AACCAAAGCATCAAT-TGCAT-CATCC
60 TTTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCAAACCAAAGCATCAATAT-CATGTATCC
* *** * **
65499 TAATG-AGATAACTAAATT-TATAGTATCTAATCCT-
123 TAATGAAGAGAA-TGTGTTCT-TGGTGCCTAAT-CTA
** * * *
65533 GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTTAGAGACAAACTTTGATTCTA
1 GAAAAGAAT-GGGATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGATT-TA
* * * * *
65598 TAAAAAATGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTACT-
64 TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATATCATGTATCCTAATG
* * * *
65662 AATGGGAATTTGCTCTTGGTTCCTAATCTA
128 AA-GAGAATGTGTTCTTGGTGCCTAATCTA
65692 GAA
1 GAA
65695 TAGTATGGAG
Statistics
Matches: 4892, Mismatches: 1796, Indels: 898
0.64 0.24 0.12
Matches are distributed among these distances:
154 8 0.00
155 91 0.02
156 194 0.04
157 440 0.09
158 1389 0.28
159 2115 0.43
160 450 0.09
161 99 0.02
162 105 0.02
163 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (156 bp):
GAAAAGAATGGGATTAGTATGAGAATCCATGTTTGTCTTATTTAAGAGATAAACTTTGATTTATC
AAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAACCAAAGCATCAATATCATGTATCCTAATGAAG
AGAATGTGTTCTTGGTGCCTAATCTA
Found at i:66974 original size:52 final size:52
Alignment explanation
Indices: 66918--67033 Score: 205
Period size: 52 Copynumber: 2.2 Consensus size: 52
66908 ATTATGCTTT
*
66918 GTATCGATACATTATATCGATACATGTTCATTATATCGATACGTGGACAATG
1 GTATCGATACATTATATCGATACATGTTCATTATATCGATACATGGACAATG
* *
66970 GTATCAATACATTGTATCGATACATGTTCATTATATCGATACATGGACAATG
1 GTATCGATACATTATATCGATACATGTTCATTATATCGATACATGGACAATG
67022 GTATCGATACAT
1 GTATCGATACAT
67034 GAAATTGGCA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 60 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (52 bp):
GTATCGATACATTATATCGATACATGTTCATTATATCGATACATGGACAATG
Found at i:67105 original size:33 final size:33
Alignment explanation
Indices: 67063--67131 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
67053 TTTCCACTGT
*
67063 TTGTATCGATACATGGT-ACAATGTATCGATACA
1 TTGTATCGATACATGATGA-AATGTATCGATACA
* *
67096 TTGTATCGATACGTGATGAATTGTATCGATACA
1 TTGTATCGATACATGATGAAATGTATCGATACA
67129 TTG
1 TTG
67132 CTTGTAACGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
33 31 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.36
Consensus pattern (33 bp):
TTGTATCGATACATGATGAAATGTATCGATACA
Found at i:67935 original size:13 final size:13
Alignment explanation
Indices: 67917--67942 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67907 CAATTTTTTG
67917 TGTATCGATACAT
1 TGTATCGATACAT
67930 TGTATCGATACAT
1 TGTATCGATACAT
67943 ACTTTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:67939 original size:33 final size:33
Alignment explanation
Indices: 67897--67961 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
67887 TACAAGCCAA
* *
67897 TGTATCGATACA-ATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-CTTTGGTGTATCGATACAT
67930 TGTATCGATACATACTTTGGTGTATCGATACA
1 TGTATCGATACATACTTTGGTGTATCGATACA
67962 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATACTTTGGTGTATCGATACAT
Found at i:74496 original size:13 final size:13
Alignment explanation
Indices: 74478--74502 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74468 CAACATTCCT
74478 TGTATCGATACAA
1 TGTATCGATACAA
74491 TGTATCGATACA
1 TGTATCGATACA
74503 TTGGGTACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:75733 original size:13 final size:13
Alignment explanation
Indices: 75715--75745 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
75705 ACAATTCATC
75715 ATGTATCGATACA
1 ATGTATCGATACA
75728 ATGTATCGATACA
1 ATGTATCGATACA
*
75741 TTGTA
1 ATGTA
75746 CTATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:75735 original size:33 final size:33
Alignment explanation
Indices: 75698--75761 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 33
75688 ACAAGCTACA
75698 TATCGATACAATTCAT-C-ATGTATCGATACAATG
1 TATCGATAC-ATT-ATACTATGTATCGATACAATG
*
75731 TATCGATACATTGTACTATGTATCGATACAA
1 TATCGATACATTATACTATGTATCGATACAA
75762 ACAATGGTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 1 0.04
32 4 0.14
33 23 0.82
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.34
Consensus pattern (33 bp):
TATCGATACATTATACTATGTATCGATACAATG
Found at i:75834 original size:19 final size:19
Alignment explanation
Indices: 75810--75876 Score: 92
Period size: 19 Copynumber: 3.8 Consensus size: 19
75800 TAATATTGTC
75810 CATGTATCGATACAATTAA
1 CATGTATCGATACAATTAA
75829 CATGTATCGATAC-----A
1 CATGTATCGATACAATTAA
75843 -ATGTATCGATACAATTAA
1 CATGTATCGATACAATTAA
75861 CATGTATCGATACAAT
1 CATGTATCGATACAAT
75877 GTATCGATAC
Statistics
Matches: 42, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 12 0.29
14 1 0.02
18 1 0.02
19 28 0.67
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.31
Consensus pattern (19 bp):
CATGTATCGATACAATTAA
Found at i:75848 original size:13 final size:13
Alignment explanation
Indices: 75830--75888 Score: 69
Period size: 13 Copynumber: 5.1 Consensus size: 13
75820 TACAATTAAC
75830 ATGTATCGATACA
1 ATGTATCGATACA
75843 ATGTATCGATACA
1 ATGTATCGATACA
75856 A--T-T--A-AC-
1 ATGTATCGATACA
75862 ATGTATCGATACA
1 ATGTATCGATACA
75875 ATGTATCGATACA
1 ATGTATCGATACA
75888 A
1 A
75889 AGCATAATGT
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
6 1 0.03
7 2 0.05
8 2 0.05
9 1 0.03
10 1 0.03
11 2 0.05
12 2 0.05
13 28 0.72
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:75852 original size:32 final size:32
Alignment explanation
Indices: 75811--75888 Score: 156
Period size: 32 Copynumber: 2.4 Consensus size: 32
75801 AATATTGTCC
75811 ATGTATCGATACAATTAACATGTATCGATACA
1 ATGTATCGATACAATTAACATGTATCGATACA
75843 ATGTATCGATACAATTAACATGTATCGATACA
1 ATGTATCGATACAATTAACATGTATCGATACA
75875 ATGTATCGATACAA
1 ATGTATCGATACAA
75889 AGCATAATGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (32 bp):
ATGTATCGATACAATTAACATGTATCGATACA
Found at i:80316 original size:476 final size:475
Alignment explanation
Indices: 76767--94692 Score: 18712
Period size: 476 Copynumber: 37.8 Consensus size: 475
76757 TCGGTCAGAA
* ** * * *
76767 AAAAGATTTTCCAAGCAAAAGAAAATCATCAATGCCATTTA-CCTTATTGAGGAGAATGTGTCTG
1 AAAAGA-TTTCCATGCAAAAGAAAATCATCAATATCATTTATCC-TAATGAGGAGAATGTGTTTA
* * * * * * *
76831 TAGTGCCTAATCACAAAATGAATGAAGATCTTTACTTGAATCTATGCTTGCCTCAGTTGAGGCAT
64 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * ** *
76896 GAAATTAGAATTCACAAAAATTGGTGGGAAGAAATCCTTTCTTATGAAACCAAAGCGTCAATATC
129 GAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
* * * * * * *
76961 GGGTATCCTTATGCGAAGACTATGTTTGTGGTGCCTAATCTTAAAAAGAATTGGGATTAGTATTA
194 GTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* * * * * * *
77026 CTATTGATGCTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAATGATGGAAAGAATAGT
259 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * * * * * *
77091 TTTTCTTGCAACCCCAAACCATTAATGTCATGTATCCTAATGAAGAGAATCTGTTCTTGGTTCCA
324 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTTCC-
* * * * * *
77156 AATCTTAAAAAGAATGGAAACTATTACGAGCAA-CGATGCTTATCATATTTAAAGGATGAACTTT
388 AATCTTGAAAAGAATGGAGACTGTTACGAG-AATCGATGCTTGTCATATTTAAGGGATGAATTTT
77220 GATTTTAAGGAAAATAGGGCAAAG
452 GATTTTAAGGAAAATAGGGCAAAG
* * * * * * * *
77244 AAAAGATTTCCATGCAAAAAAAAAACGTTAGTATCATTTATCCAAATGAGGAGAATGTGCTCATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * * * *
77309 GAGCCTAATCACAAAATGAATGATGATCATTTCTAGAATACATGTTT-TCCTTATTCGGGGCATG
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT-CTCATTTGAGGCACG
* * * * * * ** * *
77373 AACTTAAACTATACAAAAACTGCTGAGAAGAAAGCCTTTCATATGAAACCAAAGCATTAATATCA
130 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
* * * * * *
77438 TCTATCATAATAAGAAGACTATGTTTATGGTGCTTAATCATGAAAAG-ATGGGGATTAGTATGAC
195 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * * * ** *
77502 TATTCATGTTTGTCTTGTTTAGGAGATAAACTTTGATTTTATCAAAAATAGTGGAAAGAAAACCT
260 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * **
77567 CTTCTTGCGACATCAAAGCATCAGTGTCATGTATCCTAATGAAAGGAATGTGTTCTTGGTT-CAT
325 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTTCCA-
** *
77631 GATCTTGAAAAGAATGGAGACT-TTTTGAGTATCGA----TG-C-TATTTAAGGGATGAATTTTG
389 -ATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTG
77689 ATTTTAAGGAAAATAGGGCAAAG
453 ATTTTAAGGAAAATAGGGCAAAG
* * *
77712 AAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTGTA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * * *
77777 GTGCCTAATAACAAACTGGATGAAGACCTTTACTAGAATCCATGTTTGCCTCATTTGAGGCATGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* ** * * * * * *
77842 ACTTATACTTTTGAAGAATTGGTGGGAAGAAAGCTTTTCTTACAAAACCAAACCATCAATATTGT
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* *
77907 GTATCCTTAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA-GGGGATTAGTATGGCT
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * * * * *
77971 ATTTATGTTTATCTTATTTAAGAGAGAAAACTTTGATTCTATCAAAAACAGTGGAAATAAATGCT
261 ATTCATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
** * **
78036 TTTCTTATGAAACCAAAGCAGAAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTTCCCA
325 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTT-CCA
* * * *
78101 ATCTTTAAAAGAAT---G---G--A--AGAATCGATGTTTGTCTTATTTAATGGATGAATTTTGA
389 ATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGA
78156 TTTTAAGGAAAATTA-GGCAAAG
454 TTTTAAGGAAAA-TAGGGCAAAG
* * * * * *
78178 AAAAGATTTCCATGCAAAAAAAAATCTTGAATATCATTTAT-CTTATAGAGGATAATGTGTTTGT
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-GAGGAGAATGTGTTTAT
* * * * *
78242 AGT-CCTAATCACAAAACGAATGAAGATCCTTACTAGAATCCATGTCTGTCTCATTTAAGGCACA
65 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * * **
78306 AACTTAGACTTTATAAAAATTGGTAGGAAGAAAGCCTTTCTTTCGAAATCAAAGTGTCAATATCG
130 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
* * *
78371 TGTATCCTTATGAGAAGAGTATGTTTATGGTGCCTAATCCTGAAAAGATTGGGGATTAGCATGAC
195 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * * * *
78436 TATTTATGTTTGTCTTATTTAAGAAACAAACTTTGTTTCTATCAAAAATGG-GAGAAAGAAAATC
260 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTG-GAAAGAAAAGC
* * * * * * *
78500 TTTTCTTGCAAC-CCTAAACCAGCAATGTCATGTATCGTAATGAAGGGAATCTATTCTTGGTTCC
324 TTTTCTTGCGACACC-AAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTTCC
* * * * * *
78564 TAATCTTGAAAACAATGGAGACTATTACGCA-AAACGATACTTGTTATATTTAAGGGATGAACTT
388 -AATCTTGAAAAGAATGGAGACTGTTACG-AGAATCGATGCTTGTCATATTTAAGGGATGAATTT
* * *
78628 TGATTTTATGGAAAATAGAGCAATG
451 TGATTTTAAGGAAAATAGGGCAAAG
* * * ** *
78653 AAAATATTTCCATGTGACAAAA-ATAAA-CATTAGTATCATTTATCCTAATGAAAAGAATGTGCT
1 AAAAGATTTCCA--TG-CAAAAGA-AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * * * * * * * * *
78716 CATAATGCCTAATCACAAAATTAATGAAGATCATTTCTTGAATACATGTTTTTCTTACTCGGGGC
62 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
* * * * ** * * * *
78781 ATGAACTTAAACTATACAAAAACTGGCCGTAAGAACA-CCTTTCATGCAAAACCAAAGCATCGAT
127 ACGAACTTAGACTTTACAAAAATTGGTGGGAAGAA-AGCCTTTCTTGCGAAACCAAAGCATCAAT
* * * * *
78845 ATCATCTATCCTAATAAGAAGACAATGTTTATGGTGCCTAATCCTGAAAAG-A-----ATTAGTA
191 ATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* * * * *
78904 TGACTATTCCTATATGTCTTATTTCAA-AGACAAACTTTGATTCTATCAAAAATGGTAGAAAGAA
256 TGACTATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * * * * *
78968 AAGCTTTTTTTGCAACACCAAAGCATCAATGTCATGTATCCAAATGAAGGGAACGAGTTCTTAGT
320 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGT
* * * * * *
79033 TCCTAACCTTGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTTTCATATTTAAGGGTTGAAC
385 TCC-AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAAT
* *
79098 TTTGATTTTAAGGAAAATAGGGTAAAA
449 TTTGATTTTAAGGAAAATAGGGCAAAG
* * *
79125 AAAAGATTTTCATGC-AAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATT
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
** * * * ** * * * *
79189 GCACCTAATAACAAAATGAATGAAGAGCCTTACTAGAAAACATGTTTTTCCCATTCGCGGCACGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * *
79254 ACTTATACTTTA-GAAAATTGGTGGGAAGAAAGCTTTTCTTGCGAAACCAAAGCGTCAATATCGT
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * * * *
79318 GTATCCTTATGAGAAGACTATATTTGTGGTGCCTAATCCTAAAAAGAA-CGGGATTAGTATAACT
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
** * *
79382 ATTCACATTTGTCTTATTTAAAAGACAAAACTTTAATTCTATCAAAAACGGTGGAAAGAAAAGCT
261 ATTCATGTTTGTCTTATTTAAGAGAC-AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * * *
79447 TTTCTTACAACACCAAAGCATCAATGTCATGTATCCAAATGATGGGACTATGTTCTTGGTTCCCA
325 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTT-CCA
* * * ** * * * *
79512 ATATAGAAAAGAATAGAGACTGTTATAAGAATCGAAGCTTATGA-ATTCAAGGGATGAATTTTGA
389 ATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGA
* *
79576 TTTTAAGGAAGACAGGGCAAAG
454 TTTTAAGGAAAATAGGGCAAAG
*
79598 AAAAGATTTCCATGCAAAACAAAATCATCAATATCATTTATCCTAATGA-GAGAATGTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* ** * ** * * *
79662 ATGCCTAATCTTAAAAGGAATCTAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGACAGGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * * *
79727 ACTTATACTTTGCAAAAATTGGCGGGAAGAAAGCCTTTCTCGCGAAAACGAAGCATCAATATCGT
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
** *
79792 GTATCCTTATGAGAAGACTATCATTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACT
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * * * **
79857 ATTCATGTTTGACTTATTTAAAAGACAAACTTTGACTCTATCAAAAACGATGGAAAGAAAAGCCC
261 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * **
79922 TTCTTGCGACACCAAAGCATCAATGTAATGCATCCTAATGAAAGGAATGTGTTCTTGGTTCACAA
326 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTTC-CAA
* * * * *
79987 TCTTGAAAAGAATGGACATTGTTATGAGAATCGATGCCTATCATATTTAAGGGATGAATTTTGAT
390 TCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGAT
* * *
80052 TTTTAGGAAAGTAGGGAAAAG
455 TTTAAGGAAAATAGGGCAAAG
* * * * * *
80073 AAAAGATTTCCATGCAAAAAAAAATCATCAATATAATTTATCCTAATAAGAACAATATGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* ** * * * *
80138 GCGCCTAAAAACAGAATGAATGAAGCTCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACAA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * *** * *
80203 ACTTATAGTTTAGAAAAATTGGTGGGAAGAAAGCTTTTCTTTTAAAACCAAAGCATCACTATCAT
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
** * *
80268 GTATCCTTAAAAGAAGACTATGTTTATGGTGCCTAATCTTGGAAAGAATGGGGATTAGTATGACT
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * * * * * * * *
80333 GTTTATGTTTCTCCTATTTAAGAGACAAAATTTTAATCCTATCAAAAACAGTGGAAAGAAAAGCC
261 ATTCATGTTTGTCTTATTTAAGAGAC-AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
*
80398 TTTCTTGCGACACCAAAGCATCAATGTCATGTAT-CTACATGATGGAAATGTGTTCTTGGTTCCC
325 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA-ATGATGGGAATGTGTTCTTGGTT-CC
* * * *
80462 AATCTTGAAAAGAATGGAGATTGTTTCGAGAATCGATGCTGGTCATATTTAAGAGATGAATTTTG
388 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTG
80527 ATTTTAAGGAAAATAGGGCAAAG
453 ATTTTAAGGAAAATAGGGCAAAG
* * * *
80550 AAAAGATTTTCATGCAAAATAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTCTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * *
80615 GTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCATGTTAGTCTCATTTGAGGCATGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * * * * ***
80680 ATTTAGACATTGCAATAATTGGTTGAAAGAAAGCCTTTCTTGC-AATGCCAAAGCATCAATAGAA
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCG
*
80744 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAC
195 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * *
80809 TATTGATGTTTCTCTTATTTAAGAGACAAAACTTTTATTCTATCAAAAACGGT-GAAAGGAAAAG
260 TATTCATGTTTGTCTTATTTAAGAGAC-AAACTTTGATTCTATCAAAAACGGTGGAAA-GAAAAG
* *
80873 CTTTTCTTGCGGCACCAAAGCATCAATGTCATGTAT-CTAAATGGTGGGAATGTGTTCTTGGTTC
323 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AATGATGGGAATGTGTTCTTGGTT-
* * * * *
80937 CCAATCTTGAAAAGAATGGAAACTGTTCCGAGAATCGACGCTTGCCATATTTAAGAGATGAATTT
386 CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTT
* *
81002 TGATTTTAAGAAAAATTGGGCAAAG
451 TGATTTTAAGGAAAATAGGGCAAAG
* * * * * * * *
81027 AAAAGATTTTCATGCAAAAGAAAACCGTCAATGTCATTTATTCTAATGAGGAGAATTTATTTATG
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * ** * * * *
81092 GT-TCTAACCACAAAAAGAACAAAGATCATTTCTAGAATCCATGTTTGTCTCGTTTAAGGCACAA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * *
81156 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAATCAAAGCATCAATATCTT
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * * ** * * *
81221 CTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATTTTG-AAAGCAATGGGCATTGGTGTGAC
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG-AATGGGGATTAGTATGAC
* * *
81285 TATTCGTGTTTGT-TGTATTTAAGAGACAAACTTTAATTCTAT-AAGAAATGGTGGAAAGAAAA-
260 TATTCATGTTTGTCT-TATTTAAGAGACAAACTTTGATTCTATCAA-AAACGGTGGAAAGAAAAG
* * * ** *
81347 CATTTTCTT-----A-CAAAGCATCAATGTCGTGTATCATAATGAAGGGAATGTAATCTTGTTTC
323 C-TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTT-
** * ** * * * * **
81406 CCAAAATTAAAAAGAATTAAGA-TAGTTACAAGAATCAATGCTTGTCTTTTTTAAGGGATGAACA
386 CCAATCTTGAAAAGAATGGAGACT-GTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATT
** * **
81470 TCAATTTTATGGAAAACGGGGCAAAG
450 TTGATTTTAAGGAAAATAGGGCAAAG
* * * **
81496 AAAAGATTTTCATGCAAAA-AAAACCATCAATTTCATTTATCCTAAAAAGGAGAATGTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * *
81560 GTACCTAATCACAAAATGAATAAAGATAAATACTAGAATCCATGTCTGTCTCATTTCAGGCACGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * ** * *
81625 ACTTACACTTTACAAAAATTTGTTTGG-AGAAAGCCTTTCTTGTAAAACTAAAGCATTAATATCG
131 ACTTAGACTTTACAAAAA-TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
** * ** * *
81689 TCAATCCTAATGAGAAGACTATGTTTATCATGCCTAATCCTAAAAAGAATGGGGATTACTATGAC
195 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
** * ** * * * * ** *
81754 TATTTGTGTCTACCTTATTTGAGTGACAAATTTTGACTCTAT-AAAAATTAGTGGAAAGAAAACC
260 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGGTGGAAAGAAAAGC
* * * * * * *
81818 TTCTCTT-CTGACCCCATAGCA-CTAATGTCATGTATCCTAATGAAGGGAAGGTTTTCTTGATTG
324 TTTTCTTGC-GACACCAAAGCATC-AATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTT-
** * * **
81881 CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTACCCT-TTTTAGCGGATGAAAG
386 CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAG-GGATGAATT
*
81945 TTGATTTTAAGAAAAATAGGGCAAAG
450 TTGATTTTAAGGAAAATAGGGCAAAG
* *
81971 AAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAATGTGTTTACT
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-T
* *
82036 A-TGCC-ATATCACAAAATGAATGAAGATCGTTACTAGAATCCATGATTGTCTCATTT-ATGGCA
65 AGTGCCTA-ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA-GGCA
** * * * *
82098 TAAACTTAGGCTTTACAAAAATTAGCGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATAT
128 CGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
* **
82163 CGTGCATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTGCG
193 CGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG
* * * *
82227 ACTATTCATGTTTGTATTATTTAAAAGGCAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAG
258 ACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * * * * *
82292 CTATTCTTGTGAC-CACAAAGGATCAATGCCATGTATCCAAATGATGGGAATGTGTTCTTAGTTC
323 CTTTTCTTGCGACAC-CAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTTC
* * * * * * * *
82356 CTAGTCCTAAAAAGAATGGAGACTGTTGCGCGCA-CTGATGCTTGTCATTTTTAAGGGATGAACT
387 C-AATCTTGAAAAGAATGGAGACTGTTACGAGAATC-GATGCTTGTCATATTTAAGGGATGAATT
82420 TTGA-TTTAAGGAAAATAGGGCAAAG
450 TTGATTTTAAGGAAAATAGGGCAAAG
* * *
82445 AAAAGATTTCCATGCAAAAAAAAAAATCATCAGTATCAGTTATCCTAATGAGGAGAATGTGTTTA
1 AAAAGATTTCCATGC--AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * *
82510 TAGTGCCTAGTCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGACAC
64 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* *
82575 -AGACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCATGTGAAACCAAAGCATCAATAT
129 GA-ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
* ** * * * * **
82639 CGTCTATCCCAATGAGAAGACTATGTTTACGGCGCCTTATCCT-AAATAAAATATGGATTAGTAT
193 CGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA-AGAATGGGGATTAGTAT
* * ** * *
82703 GACTATTTATGTTCGAATTATTTAAGAGACAAACTTTGACTT-TATTAAAAATGGTGGAAAGAAA
257 GACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAACGGTGGAAAGAAA
* * * * *
82767 AGCTTTTCTTACGACACCAAAGCATCAATGTTATGTA-ACTAAATTATGGGAATGCGTTCTTGGT
321 AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AATGATGGGAATGTGTTCTTGGT
* * * * * * * *
82831 TCCCAATCTTGAAAAGAATAGAGATTGTTTCGACAATTGACGCTTGTCATATTTAAGAGATGAAA
385 T-CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAAT
*
82896 TTTGATTTTAAGGAAAATAGGGGAAAG
449 TTTGATTTTAAGGAAAATAGGGCAAAG
* *
82923 AAAAGATTTTCATGCAAAAGAACA-CTATCAATATCATTTATCCTAA-GAAGGAGAATGTGTTTA
1 AAAAGATTTCCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTA
* * * * * * *
82986 CAGTGCCTAGTCACAAAATGAATTAAAATCATTTCTAGACTCCATGTTTGTCTCATTTGAGGCAT
64 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * * * ** * *
83051 GAATTTAGACATTGCAATAATTGGTTGAAAGTAAA-CCTTTCTTGCGATGCCAAAACATCTATAT
129 GAACTTAGACTTTACAAAAATTGGTGGGAAG-AAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
** * * * *
83115 AATGTATCCTTA-CATGAAGACTACGTTTATGGTGCCTAATCCTGAGAAGAATAGGGATTAGTAT
193 CGTGTATCCTTATGA-GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT
* * *
83179 GACTATTCATGTTTCTCTTATTTAAGAGACAAAACTTTGATTCTATGAAAAATGGTGGAAAGAAA
257 GACTATTCATGTTTGTCTTATTTAAGAGAC-AAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
* * * ** * **
83244 AGCTTTTCCTACGACAGCAAAGCATCAATGTCATGTAT-CTAAATCTTGGGTATGTGTTCTTCAT
321 AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AATGATGGGAATGTGTTCTTGGT
* * * *
83308 TCCCAATCTTGAAAAGAATGGAGACTATTCCGAGAATCGATGCTAGTCATATTT-AGAAGATGAA
385 T-CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAG-GGATGAA
*
83372 TTTTGATCTTAAGGAAAATAGGGCAAAG
448 TTTTGATTTTAAGGAAAATAGGGCAAAG
* * * * * *
83400 AAAAGATTTTCATACAAAACAAAACCATTAATATCATTTATCCTAATGAGAAGAATGTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * *
83465 GTACCTAATCACAAAATGAGTAAAGATCAATACTAGAATCCATGTTTGTCTCATTTCAGGCACGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* ** *
83530 ACTTACACTTTACAAAAATTGGTTTGAAGAAAGCCTTTCTTGCAAAACCAAAG-AGTCAATATCG
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA-TCAATATCG
** * * * * * * *
83594 TCAAACCTAAAGAGAAGACTATGTTTA-CGTGCCTAATCTTGAAAAGAATGGGGATTACTATAAC
195 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
** * * * *
83658 TATTTGTGTTTGCCTTATTTAAGTGACAAACTTTGACTCTAT-AAAAATCGGTGGAAAGAAAAAC
260 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGGTGGAAAGAAAAGC
* * * * * * *
83722 TTTTCTTGTGAC-CTCATAGCATTAATGTCATGTATCCTAATGAAGAGAATGTGTTCATGGTAGC
324 TTTTCTTGCGACAC-CAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGT-TC
* * ** * * *
83786 CAATCTTGAAAGGAATGGAGACTGTTACGAGAATCGATGCCTACCTTTTTTAAGGGATGAAATTT
387 CAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTT
83851 GATTTTAAGGAAAATAGGGCAAAG
452 GATTTTAAGGAAAATAGGGCAAAG
* *
83875 AAAAGATTTCCATGCAAAAGAAAATCATTC-GTATCATTTAT-CTATTGAGGAGAATGTGTTTAC
1 AAAAGATTTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-
* * * * *
83938 TA-TGTCGAATCACAAAATGAGTGAAGATCGTTACTAGAATCCATGATTGTCTCATTT-ATGGCA
64 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA-GGCA
* * * *** * * *
84001 CGAACTTAGGCTCTACAAAAATTAGCAAGAAGAAAGCCTTTCTTGCCAATCCAAAGCGTCAATAT
128 CGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
* *
84066 CGTGCATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATT-GTGTG
193 CGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG
* * * * *
84129 ACTATTCATGTTTGTATTATTTAAAAGGCAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAG
258 ACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * * * * *
84194 CTATTCATGCGACCCCAAAGCATCAATGTCATGTATCCAAATTATGGGAATGTGTTCTTAGTTCC
323 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTTCC
* * * * * * * * *
84259 TAGTCCTAAAAAGAACGGAGACTGTTGCGCGCA-CTGATGCTTGTCATTTTTAAGGGATGAACTT
388 -AATCTTGAAAAGAATGGAGACTGTTACGAGAATC-GATGCTTGTCATATTTAAGGGATGAATTT
84323 TGA-TTTAAGGAAAATAGGGCAAAG
451 TGATTTTAAGGAAAATAGGGCAAAG
* * *
84347 AAAAGATTTCCATGCAAAAAAAAAAATCATCAGTATCAGTTATCCTAATGAGGAGAATGTGTTTA
1 AAAAGATTTCCATGC--AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* *
84412 TAGTGCCTATTCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCAC
64 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * *
84477 AAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCATGTGAAACCAAAGCATCAATATC
129 GAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
* * ** * * ** *
84542 ATCTATCCCAATGAGAAGACTATGTTTATGGCT-CCTTATCCT-AAATAAAATATGGATTGGTAT
194 GTGTATCCTTATGAGAAGACTATGTTTATGG-TGCCTAATCCTGAAA-AGAATGGGGATTAGTAT
* * *** * *
84605 AACTATTTATGTTTGAAATATTTAAGAGACAAACTTTGACTCTATCAAAAATGGTGGAAAGAAAA
257 GACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
* * * * *
84670 GCTTTTCTTACGACACCAAAGCATCAATGTTATGTA-ACTAAATTATGGGAATGCGTTCTTGGTT
322 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AATGATGGGAATGTGTTCTTGGTT
* * * * * * *
84734 CCCAATCTTGAAAAGAATAGAGATTGTTTCGACAATCGACGCTTGTCATATTTAAGAGATGAAAT
386 -CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATT
*
84799 TTGATTTTAAGGAAAATAGGGGAAAG
450 TTGATTTTAAGGAAAATAGGGCAAAG
* * *
84825 AAAAGATTTTCATGCAAAAGAACACCATCAATATCATTTATCCTAA-GAAGGAGAATGTGTTTAT
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTAT
* * * * *
84889 AGTGCCTAGTCACAAAATGAATTAAAATCATTTCTAGACTCCATGTTTGTCTCATTTGAGGCACG
65 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * * * * * ** ** *
84954 AATTTAGGCATTGCAATAATTGGTTGAAAGTAAA-CCTTTCTTGCGATGCCAAAATATCTATATA
130 AACTTAGACTTTACAAAAATTGGTGGGAAG-AAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-
* * * * * *
85018 C-TGTATCCTTATGTGAAGACTATATTTATAGTGCCTAATCCTGGATAGAATAGGGATTAGTATG
193 CGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG
* *
85082 ACTATTCATGTTTCTCTTATTTAAGAGACAAAACTTTGATTCTATCAAAAACGATGGAAAGAAAA
258 ACTATTCATGTTTGTCTTATTTAAGAGAC-AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
* ** ** * *
85147 GCTTTTCTTACGACAGAAAAGCATCAATGTCATGTAT-CTAAATCTTGGGTATGTGTTCTTCGTT
322 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AATGATGGGAATGTGTTCTTGGTT
* * * **
85211 CCCAATCTTGAAAAGAATGGAGACTATTTCGAGAATCGATGCTAGTCATATTTAAAAGATGAATT
386 -CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATT
*
85276 TTGATTTTAAGGAAAATAGAGCAAAG
450 TTGATTTTAAGGAAAATAGGGCAAAG
* * * * * *
85302 AAAAGATTTTCATACAAAACAAAACCATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATC
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * *
85367 GTACCTAATCACAAAATGAATAAAGATCAATACTAGAATCCATGTTTATCTCATTTCAGGCATGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* ** *
85432 ACTTACACTTTACAAAAATTGGTTTGAAGAAAGCCTTTCTTGCAAAACCAAAG-AGTCAATATCG
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA-TCAATATCG
* * * * * * *
85496 T-TAATCCTAAAGAGAAAACTATGTTTATTGTGCCTAATCTTGAAAAGAATGGGGATTACTATAA
195 TGT-ATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
** * * * * *
85560 CTATTTGTGTTTGCCTTATTTAAGTGACAAACTTTGACTCTAT-AAAAGTCGGTGGAAAGAAAAA
259 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA-ACGGTGGAAAGAAAAG
** * * * * *
85624 CTTTTCTTATGAC-CTCATAGCATCAATGTCATGTATCCTAATGAAGAGAAGGTGTTCTTGGTAG
323 CTTTTCTTGCGACAC-CAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGT-T
* * * * * * * *
85688 ACAATCTTGAAAGGAATGGAGACTATTACGAGAATCGATGCTTGCCTTTTTTAAGGGATGAAATA
386 CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTT
* *
85753 TGATATTAAGGAAAATAGGGCAAAA
451 TGATTTTAAGGAAAATAGGGCAAAG
* ** * *
85778 AAAAGATATCCATGCAAAAGAAGCTCATTAGTATCATTTATCCT-ATGGAGGAGAATGTGTTTAC
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-GAGGAGAATGTGTTTA-
* * * *
85842 TA-TGCCGAATCACAAAATGAGTGAAGATCGTTACTAGAATCCATGATTGTCTCATTT-ATGGCA
64 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA-GGCA
* * *
85905 CGAACTTAGGCTTTACAAAAATT-TTCGGGAAGAAAGCCTTTCTTGCGAATCCAAAGCATCAATA
128 CGAACTTAGACTTTACAAAAATTGGT-GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATA
* * * *
85969 TCGTGCATCCTTGTGAGAAGACTA-GTTTATGGTGCTTAATCCTGAAAAGAAT-GGGATTAGTGT
192 TCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT
* * * *
86032 GACTATTCATGTTTGTATTATTTAAAAGGCAAACTTTGATTCTATCAAAAACGATGGAAAGAAAA
257 GACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
* * * * * *
86097 GCTGTTCATGCGACCCCAAAGCATCAATGTCATGTATCCAAATTATGGGAATGTGTTCTTAGTTC
322 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTTC
* * * * * *
86162 CTAGTCCTGAAAAGAATGGAGACTGTTACGCGCA-CTGATGCTTGTCATTTTTAAGGGATGAACT
387 C-AATCTTGAAAAGAATGGAGACTGTTACGAGAATC-GATGCTTGTCATATTTAAGGGATGAATT
86226 TTGA-TTTAAGGAAAATAGGGCAAAG
450 TTGATTTTAAGGAAAATAGGGCAAAG
* * * *
86251 AAAAGATTTCCATGCAAAAAAAAAAATCTTCAGTATCAGTTATCCTAATGAGGAGAATGTGTTTA
1 AAAAGATTTCCATGC--AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* *
86316 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGTGGCAC
64 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * *
86381 AAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCATGTGAAACCAAAGCATCAATATC
129 GAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
* * ** * * * * * *
86446 ATCTATCCCAATGAGAAGACTCTGTTTATGGCGCTTTATCCT-AAATAAAATGTGGATTAGTATG
194 GTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA-AGAATGGGGATTAGTATG
** * * * * *
86510 ACTATAT-ATGTTTGAATAATTTAAGGGACAAACTTTGACTCTATCAAAAATGGTAGAAAGAAAA
258 ACTAT-TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
* * * * * *
86574 GCTTTTCTTGCGACACGAAAGCATCAATGTCTTGTA-ACTAAATTATGGGAATGCGTCCTTGGTC
322 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AATGATGGGAATGTGTTCTTGGT-
* * * * * * * * ** *
86638 CCCAATCTTGAAAAGAATAGAGATTTTTTCGACAATTGACGCTTGTCATATTTAAAAGATGAAAT
385 TCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATT
* *
86703 TTGATTTTAGGGAAAATAGGGGAAAG
450 TTGATTTTAAGGAAAATAGGGCAAAG
* * **
86729 AAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAACAAGGAGAATGTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * *
86794 GTGCCTAGTCACAAAATGAATTAAAATCATTTCTAGACTCTATGTTTGTCTCATTTGAGGCACGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * * * ** * * **
86859 ATTTAGACTTTGCAATAATTGGTTGAAATTAAA-CCTTTCTTGCGACGCCAAAACATCTATATAA
131 ACTTAGACTTTACAAAAATTGGTGGGAA-GAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
* * * * * *
86923 TGTTTCTTTATGAGAAGACAATGTTTATGGTGCCAAATCCTAAAAAGAATAGGGATTAGTATGAC
195 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * * *
86988 TCTTCATGTTTCTCTTATTTAAGAGACAAAACTTTGATTCTATGAAATACGGTGGAAAGAAAAGC
260 TATTCATGTTTGTCTTATTTAAGAGAC-AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * * * * **
87053 TTTTC-TGACGAGACCAAAGCATCAATGCCATGTAT-CTAAATGTTGGGTACGTGTTCTTCATTC
324 TTTTCTTG-CGACACCAAAGCATCAATGTCATGTATCCT-AATGATGGGAATGTGTTCTTGGTT-
* * * * **
87116 CCAATCTTGAAAAGAATAGAGACTATTCCGAGAATCGATGCTAGTCATA-TTAAAAGATGAATTT
386 CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTT
87180 TGATTTTAAGGAAAATA-GGCAAAG
451 TGATTTTAAGGAAAATAGGGCAAAG
* * * * * *
87204 AAATGATTTTCATACAAAAGAAAACCATCAATATCATTTATCTTAA-GTAGGAGAATGTGTTTGT
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTAT
* * * * * * *
87268 AGTACCTAATCACAAAATGAGTAAACATCAATACTAGAATCCATGTTTGTCTCATTTCAGGCATG
65 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * *
87333 AACTTACACTTTACAAAAATTGGAT-TGAAGAAAGCCTTTCTTGCAAAACCAAAGCGTCAATATC
130 AACTTAGACTTTACAAAAATTGG-TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
** * * * * * **
87397 GTCAATCCTAAAGAGAAGACTATGTTTATCGTGTCTAATCTTGAAAAGAATGGGGATTACAATGA
194 GTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* * * * * * *
87462 CTTTTCGTGTTTGCCTTATTTAAGTGACAAACTTTGACTCTAT-AAAAATTGGTGGAAAGAAAAC
259 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGGTGGAAAGAAAAG
* * * *** * *
87526 CTTTTCTTGTGAC-CTCATAGCATCAATGTCATGTATCCCAATGAAAAGAAGGTGTTCTTGTTTG
323 CTTTTCTTGCGACAC-CAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTT-
* * * * * *
87590 CCAATCTTGAAAGGAATGGAGACTATTACGAGAATCGATGCCTGTCTTTTTTAAGGGATGAAATT
386 CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTT
*
87655 TGATTTTAAGGAAAATAGTGCAAAG
451 TGATTTTAAGGAAAATAGGGCAAAG
*** *
87680 AAAAGATTTCCATGCAAAAGAAAATCATTTGTATCATTTATCCTAATCAGGAGAATGTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * *
87745 GTG-CTAAATCACATAATGAATGAAGATCATTACTAGAATCCATGTTTGCCTCAATTGAGGCACG
66 GTGCCT-AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * *
87809 AACTTAGGCTTTACAAAAATTAGTGGGACA-AAAGCCTTTCTTGCGAAACCAAAG-GTCAACATC
130 AACTTAGACTTTACAAAAATTGGTGGGA-AGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
* * * *
87872 GTGTATCCTTATGAGAAGACTATGTTTAGGGTGCCTAATCCTGAAAACAAT-GGTATTAGTGTGA
194 GTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* * * * * * *
87936 CTATTGATATTTGTATTAATTAAAAGGCAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGC
259 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * * * **
88001 TATTCTTGCGACCCCAAAGCATCAATGTCAAGTATCCAAATGATGGGAATGT-TTCTTACTTCCC
324 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTT-CC
* * * * *
88065 AGTCTTGAACAGAATGGAGACTATTACGAGCAA-CGATGCTTGTCATTTTTAAGGGATGAACTTT
388 AATCTTGAAAAGAATGGAGACTGTTACGAG-AATCGATGCTTGTCATATTTAAGGGATGAATTTT
* *
88129 GATTTTAAGCAAAATAGGGCAAAA
452 GATTTTAAGGAAAATAGGGCAAAG
* * * * * *
88153 AAAAGATTTCCACGCAAAA-AAAATCATTAGTATCACTTATCCTAATGAGCAGAATGTTTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* *
88217 GTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGCCACGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* *** * *
88282 ACATAGACTTTACAAAAATTGGTAAAAAGAAAGCCTTTCATGTGAAACCAAAGCATCAATATCGT
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * * *
88347 CTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATTCTGAATAA-AATGTGGATTAGTATGAC
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA-AAGAATGGGGATTAGTATGAC
** * * ** *
88411 TATTTGTGTTTGACTTATTTAAGAGACAAACTTTGACTCTATCAAAGGCGGTGGAAAGAAATGCT
260 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * *
88476 ATTCTTGCGACACCAAAGCATCAATGTCATGTAT-CTAAATTATGGGAATGCGTTCTTGGTTCCC
325 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AATGATGGGAATGTGTTCTTGGTT-CC
* * * * * * *
88540 AATCTTAAAAAGAATAGCGATTGTTTCGAGAATCGACT-CTTGTCATATTTAA-GAATTGAATTC
388 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA-TGCTTGTCATATTTAAGGGA-TGAATTT
*
88603 TGATTTTATGGAAAATAGAGG-AAAG
451 TGATTTTAAGGAAAATAG-GGCAAAG
* * * **
88628 AAAAGATTTTCATGCAAAAGAAAACCATCGATATCATTTATCCTAACAAGGAGAATGTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* *
88693 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGACTCCATGTTTATCTCATTTGAGGCACGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * * * * * * **
88758 ATTTAGGCTTTGCAATAATTGGTTGAAAGTAAGCCTTTCTTGC-AATGCCAAAACATCAATATAA
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCG
* * * * *
88822 CGTATCCATATGAGAAGACTACGTTTATGGAGCCTAATCCTAAAAAGAATGGGGATTAGTATGAC
195 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
** * * * ** *
88887 TATTCATGTTACTCTTTTTTAAGAGACCAAACTATGATTCTATTAAAAATAGTGGCAAGAAAAGC
260 TATTCATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
*
88952 TTTTCTTGCGACACCAAAGCATCAATGTCATGTAT-CTAAATGTTGGGAATGTGTTCTTGGTTCC
324 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AATGATGGGAATGTGTTCTTGGTT-C
* * * * * *
89016 CAATCTAGAAAATAATGGA-AGCTGTTATGAGAATCAAAGCTT-TCCATATTTAAGGGAAGAATT
387 CAATCTTGAAAAGAATGGAGA-CTGTTACGAGAATCGATGCTTGT-CATATTTAAGGGATGAATT
* * *
89079 TTGATTTCAAGGAAGATAGGGCAAAC
450 TTGATTTTAAGGAAAATAGGGCAAAG
* * ** * *
89105 AAAAGATTTCCATGCAAAAGAAAAACATGAATATTGTCTATCCTAATGAGGAGCATGTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * *
89170 GTGCCTAATCACAAAATGAATGAACATCATTACTAGAATCTATGCTTGTCTCATTTGAGGCACGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
** * * * * * * * ** ** * **
89235 GTTTAGACTTTGCAATAATTGGTTGAAAGTAA-CTTTTTCCTATGATGCCAAAGCATCAACATAA
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC-CTTTCTTGCGAAACCAAAGCATCAATATCG
* * *
89299 TGTATTCTTATGAGAAGACT-TGTTTATGGTGCCTAACCCTGAAAAGATTGGGGATTAGTATGAC
195 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * *
89363 TATTCATGTTTCTCTTATTTAAGAGATAAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGC
260 TATTCATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * ** *
89428 TTTTCTTGTC-ACACAAAAGCATCAATGTCATGTAT-CTAAATGTTACGTATGTGTTCTTGGTTC
324 TTTTCTTG-CGACACCAAAGCATCAATGTCATGTATCCT-AATGATGGGAATGTGTTCTTGGTTC
* * * **
89491 TCAATCTTGAAAAGAATGGAGACTATTCCGAGAATCGATGCTTGCCATATTTAAGAAATGAATTT
387 -CAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTT
*
89556 TGATTTTAAGTAAAATAGGGCAAAG
451 TGATTTTAAGGAAAATAGGGCAAAG
* * * * * * *
89581 AAAAGATTTTCAAGCAAAAGAAAACCATCAATATTATTTATCCTAATAAGGAGGATTTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * *
89646 GTACCTAATCACAAAATCAATAAAGATCGTTACTAGAATCCATGTTTATCTCATTTGAGGTACGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * * ** * *
89711 ACTTACATTTTACAAAAATTAGTTGGAAGAAAGCCTTTCTTGTGAAATGAAAACATCAATATCTT
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * * * * * * *
89776 CTATCCTAATGAGAAGACTATGTTTATAGTTCCTAAGT-TTGAGAACAATGGTGATTAGTATGAC
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAA-TCCTGAAAAGAATGGGGATTAGTATGAC
* * ** *
89840 TATTCGTGTTTGTCCTATTTAAGAGACAAACTTTGATTCTAT-AAAAATAGTGGAAAGAAAACCT
260 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * * * *
89904 TTTCTTGCAAC-CCTATAGCATCAATGTCATGTATCTTAATGAAGGGAAGGTGTTCTTGGATGCC
325 TTTCTTGCGACACC-AAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGG-TTCC
* * * * * * *
89968 AATCATGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGCCTTTTTTAGGGGATGAAATTTG
388 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTG
* *
90033 ATTTTATGGAAAATAGGACAAAG
453 ATTTTAAGGAAAATAGGGCAAAG
* *
90056 AAAAGATTTTCATGCAAAACG--AATCCATCAATATCACTTATCCTAATGAGGAGAATGTGTTTA
1 AAAAGATTTCCATGCAAAA-GAAAAT-CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * * *
90119 TAGTACCTAATCACAAAATGAATAAAGATCAATACTAGAATCCATGTTTGTCTCATTTCAGGCAT
64 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * ** * *
90184 GAAGTTACACTTTACAAAAATTGGTTTGAAGAAAGCCTTTCTTGCAAAACTAAAGCATCAATATC
129 GAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
* ** * *
90249 ATCAATCC-TATTGAGAACACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGATTAGTATG
194 GTGTATCCTTA-TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG
** * *
90312 ACTATTTTTGTTTGCCTTATTTAAGTA-ACAAACTTTGACTCTAT-AAAAATCGGTGGAAAGAAA
258 ACTATTCATGTTTGTCTTATTTAAG-AGACAAACTTTGATTCTATCAAAAA-CGGTGGAAAGAAA
* * * * ** * * *
90375 ACCGTTTCTTGTGACCCCGTAGCATCAATGTCATGTATCCTAGTAGA-GGGAAGGTGTTCCTGGT
321 AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT-GATGGGAATGTGTTCTTGG-
* * * * * * * * *
90439 TTCCAATCTTGACAAGAATGGAGATTGTTACGAGAACCAATGTTTGTCTTTTTTAGGGGATGAAA
384 TTCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAAT
90504 TTTGATTTTAAGGAAAATAGGGCAAAG
449 TTTGATTTTAAGGAAAATAGGGCAAAG
* * * * * * * * *
90531 AAAAAATTTTCATGCAAAAGAAAATCGTTAGTATCATTTATCCTAATGCGGAGATTGCGTTTACA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* ** * * *
90596 ATGCCTAATCACAAAATGAATGAAGATCGCT-CTAGAATCCATGTTAGTCTCTTTTGAGACACGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * *** *
90660 ACTTAGGCTTTACAAAAATTAGCAAGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGT
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * *
90725 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAATAAAATGTGGATTAGCATGAC
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA-AGAATGGGGATTAGTATGAC
* * * * * * *
90789 TATTCATGTTTGAT-GTATATAAAAGATAAATTTTGACTT-TATCAAGAACGGTGGATAG-AAAG
260 TATTCATGTTTG-TCTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAACGGTGGAAAGAAAAG
* * * * ** *
90851 CCTCTTATTGCGACACCAAAGTATCAATGTCATGAATCCTAATGAAAGGAATGTGTTCTTAGTTC
323 -CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTTC
* * * * *
90916 ATAATTTTGAAAGGAATGGAGACGGTTACGAGAATAGATGCTTGTCATATTTAAGGGATGAATTT
387 -CAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTT
*
90981 TGATTTTAAGGAAAATAGGACAAAG
451 TGATTTTAAGGAAAATAGGGCAAAG
*
91006 AAAAGATTTCCATGCAAAAGAAAATCATCAATATGATTTATCC--------A-AA------TA-A
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* *
91055 --G------------AGGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * *
91106 ACTTATACTTTACAAAAATTGGTGGGAAGAAAGCTTTTCTTGTGAAACCGAAGCATCAATATCAT
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * *
91171 GTAACCTTATGAGAAGACTATGTTTATGGTGCCTAAT-CTCATAAAGAATGGGGATTAGTAAGAC
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA-AAAGAATGGGGATTAGTATGAC
* * * * *
91235 TATTCATTTTTGTCTTATTT-AGTAGATAAACTTTGATTCTATAAAAAATGGTAGAAAGAAAAGC
260 TATTCATGTTTGTCTTATTTAAG-AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * * * *
91299 TTTTCTTGCGACACCAACGCATCAATGTCACGTATCCAAATGATGGGAACGTGTTCTTAGTTCCC
324 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTT-CC
* * * * * * * *
91364 AATCTAGAAAATAATGGTGGCTATTACAAGAATCGAAGCTTGTCATATTTAAGGGCTGAATTTTG
388 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTG
* * *
91429 ATTTCAAGGAAGATAGGGCAAAC
453 ATTTTAAGGAAAATAGGGCAAAG
* *
91452 AAAAGATTTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAAAGAGGAGAATGTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * *
91517 GTGCGTAATCACAAAATGAATGAAGATCAATACTAGGATCCATGTTTGTCTCATTTGAGGCACGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * *** * * *
91582 ACTTGGGCTTTAAAAAAATTAGCAAGAAAAAAGCCTTTCTTGCGAAACCAAATCGTCAATATCGT
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * * *
91647 GCT-TCCTTATAAGAAGACTATGCTTATGGTGCCTAATCCTAAAAAGAAT-GGGATTAGTGTGAC
196 G-TATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * * * * *
91710 CATTCATGTTTGTATTATTTAAGAGATAAACTTTGATTTTATCAAAAATGGTAGAAAGAAAAGCT
260 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * * * *
91775 GTTCTTGCAACCCCAAAACATCAATGTCATGTATCCAAATGATGGG-ATCGTGTTCTTAGTTCCT
325 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGATGGGAAT-GTGTTCTTGGTTCC-
* * *
91839 AGTCTTGAAAAGAATGGAGACTGTTACGAGCAAT-GATGCTTGTCATTTTTAAGGGATGAACTTT
388 AATCTTGAAAAGAATGGAGACTGTTACGAG-AATCGATGCTTGTCATATTTAAGGGATGAATTTT
91903 GATTTTAAGGAAAATAGGGCAAAG
452 GATTTTAAGGAAAATAGGGCAAAG
* * * * * *
91927 AAAATATTTCCATGCAAAA-AAAATTATCAGTATCACTTGTCCTAACGAGGAGAATGTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * *
91991 GTGCCTAATCACTAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCATGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* *
92056 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCATGTGAAACCAAAGCATCAATATCGT
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * * * *
92121 CTATCCTAATGAGAAGACTATGTTTGTGGTGCCTAATCCT-AAAGAAAATGTGGATTAGTATGAC
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA-AGAATGGGGATTAGTATGAC
** * * * *
92185 TATTTTTGTTTGACTTATTAAAGAGACAAACTTTGACTCTATC-AAAACGGTGGAAAGCAAAGCT
260 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* **
92249 TTTCTTGCGACACCAAAGCATCAATGTCATGTAT-CTAAATTATGGGAATACGTTCTTGGTTCCC
325 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AATGATGGGAATGTGTTCTTGGTT-CC
* * * * *
92313 AATCTTGAAAAGAAT--AGACTTTGTTCCAAGAATCGACGCTTGTCATATTTAAGAGATGAAATT
388 AATCTTGAAAAGAATGGAGAC--TGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTT
92376 TGATTTTAAGGAAAATAAGGG-AAAG
451 TGATTTTAAGGAAAAT-AGGGCAAAG
* * * * *
92401 AAAAGATTTTCATGCAAAAGAAAACCATCAATACCACTTATCCTAACGAGGAGAATGTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * * *
92466 GTCCCTAGTCACAAAATGAAAGAATATCATTTCTAGACTCCATGTTTGTCTCATTTGAGGCATGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * * * * ** **
92531 ATTTAGGCTTTGCAATAATTGGTCGAAAGTAAGCCTTTCTTGCGATGCCAAA-CATCAATATAAT
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * * *
92595 TTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCTTGAAAAGAATAGGGATTAGTATGACT
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * *
92660 ATTCATGTTTCTCTTATTTAAGAGACAAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCA
261 ATTCATGTTTGTCTTATTTAAGAGAC-AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * *
92725 TTTCTTGCGACACCAAAGCATCAATGTCATGTAT-CTAAATGTTGGGTATGTGTTCTTCGTTTCT
325 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AATGATGGGAATGTGTTCTT-GGTTCC
* * * ** * **
92789 AATC-TCAAAAGGAATGGATACTATTTTGAGAATCGATGCTTATCATATTTAAAAGATGAATTTT
388 AATCTTGAAAA-GAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTT
92853 GATTTTAAGGAAAATAGGGCAAAG
452 GATTTTAAGGAAAATAGGGCAAAG
** * * * *
92877 AGGAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGATAATGTGTTTATT
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * ** * *
92942 GTACCTAATCACAAAATGAATAAAGATCAATACTAGAATCCATGTTTGTCTTATTCCACGCATGA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * ** *
93007 ACTTACACTTTACAAAAAATGGTTTGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGT
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* ** * * *
93072 -TAATCCTAAAAAGAAGACTATGTTTATCGTGCCTAATCCTGAAAACAATGGGGATTACTATGAC
196 GT-ATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * * * * * *
93136 TATTCGTGTTTGCCTAATTTAAGTGACAAACTTTGACTCTAT-AAAAATCAGTGGAAA-AAAACC
260 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGGTGGAAAGAAAAGC
* * * * * * * *
93199 TTTTCTTGTGAC-CTCATAGCATTAATATCATGTATCCGAATGAAGGGAAGGTGTTCATGGTTGC
324 TTTTCTTGCGACAC-CAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTT-C
* * * * * * *
93263 CAATCTTGAAAGGAATGGAGACTATTATGAGAATCGATG-TCTGTCTTTTTTAAGGGATAAAATT
387 CAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT-TGTCATATTTAAGGGATGAATTT
93327 TGATTTTAAGGAAAATAGGGCAAAG
451 TGATTTTAAGGAAAATAGGGCAAAG
* * * *
93352 AAAAGATTTCCATGCAAAAGAAAATCATTAGTATCATTTATCCTAAAGAGGAGAATGTGTTTACA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* *
93417 GTG-CTAAATCACAAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCAATTGAGGCACG
66 GTGCCT-AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * *
93481 AACTTAGGCTTTACAAAAATTAGCGGGAAGAAAGCCTTTCTTGCGAAACCAAAG-GTCAATATCG
130 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
* **
93545 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAACCCTGAAAAGAATGGGGATTAGTACAAC
195 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * * * *
93610 TATTCATGTTTGTCTTGTTTAGGAGACAAACTTTGGTTCTATAAAAAATTGGTGGAAAGAAAAGC
260 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGGTGGAAAGAAAAGC
* * * *
93675 TTTTCTCGCGAGC-CCAAAGCATCAATGTCATGTATCCAAATGATGGGATTGTGTTCTTAGTTCC
324 TTTTCTTGCGA-CACCAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTTCC
* * * * *
93739 TAGTCTTGAAAAGAATGGATATTGTTACGAGCAAT-GATGCTTGTCATTTTTAAGGGATGAACTT
388 -AATCTTGAAAAGAATGGAGACTGTTACGAG-AATCGATGCTTGTCATATTTAAGGGATGAATTT
*
93803 TGATTTTAAGCAAAATAGGGCAAAG
451 TGATTTTAAGGAAAATAGGGCAAAG
* * * * *
93828 AAAAGATTTCCACGCAAAAAAAAAAAATCATCAGTATCACTTT-TCCTAATAAGCAGAATGTGTT
1 AAAAGATTTCCATGC---AAAAGAAAATCATCAATATCA-TTTATCCTAATGAGGAGAATGTGTT
* *
93892 TATACTGCCTAATCA-AGGAA-GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
62 TATAGTGCCTAATCACA-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* * * *
93955 CACAAACTTAGACTTCACAAAAATTGGTAGGAAGAAAGCCTTTCATGCGAAACCAAAGCATCAAT
126 CACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAAT
* * * * * *
94020 ATCGTCTATCCTAATAAGAAGACTATGTTTACGGTGCCTAATTCTGAATAA-AATGTGGATTAGT
191 ATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA-AAGAATGGGGATTAGT
* * * * * *
94084 ATGACTATTTAT-TTTAGACTTATTTAAGAGACAAACTTTGACTCCATCAAAAACGATGAAAAGA
255 ATGACTATTCATGTTT-GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
* * * * * * **
94148 AGAGCTTTTCTTGGGACACAAAAGTATCAATGCCATGTAT-CTAAATTATGGGAATGCATTCTTG
319 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AATGATGGGAATGTGTTCTTG
* * * * * * *
94212 GTTCCTAATCTTGAAAAGAATAGAGATTGTTTCGAGAATCGATGCTTGTCATATCTGAGAGATTA
383 GTTCC-AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGA
* *
94277 ATTTTGATTTTAAGAAAAATAAGGCAAAG
447 ATTTTGATTTTAAGGAAAATAGGGCAAAG
* * * * * * *
94306 AAAATATTTTCATGCAAAAGAAAACCATCGATATCTTTTATCCCAATGAGGAGAATATGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * *
94371 GTACCTAATCACAAAATGAATGAAAATCATTACTAGAGTCCATGTTTGCCTCATTTGAGGCACAA
66 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* ** * * * * ** * * **
94436 ATTTATTCTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTGCGATGCCAAAACACCAATATATT
131 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* *
94501 GTATCCTTATGAGATGCCTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * * **
94566 ATTCATGTTTTTCTTATTTAAAAGATAAAACTTTGATGATATCAAAAACGGTGGAAAGAAAAGCT
261 ATTCATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * ** *
94631 TTTCTTACGACATCAAAGCATCAATGTCATGTAT-CAAATGATGGCTATATGTTCTTGGTTCC
325 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTTCC
94693 TGAAAGCTTA
Statistics
Matches: 14495, Mismatches: 2580, Indels: 749
0.81 0.14 0.04
Matches are distributed among these distances:
445 19 0.00
446 343 0.02
447 7 0.00
454 1 0.00
455 2 0.00
457 1 0.00
459 1 0.00
460 9 0.00
461 2 0.00
462 1 0.00
464 8 0.00
465 244 0.02
466 133 0.01
467 4 0.00
468 398 0.03
469 521 0.04
470 17 0.00
471 4 0.00
472 380 0.03
473 518 0.04
474 1826 0.13
475 3165 0.22
476 3629 0.25
477 2593 0.18
478 514 0.04
479 148 0.01
480 7 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (475 bp):
AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTTCTTGGTTCCAAT
CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATT
TTAAGGAAAATAGGGCAAAG
Found at i:95482 original size:13 final size:13
Alignment explanation
Indices: 95464--95489 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
95454 CAACTTTTTG
95464 TGTATCGATACAT
1 TGTATCGATACAT
95477 TGTATCGATACAT
1 TGTATCGATACAT
95490 ACTTTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:95486 original size:33 final size:33
Alignment explanation
Indices: 95444--95508 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
95434 TACAAGCCAA
*
95444 TGTATCGATACA-ACTTTTTGTGTATCGATACAT
1 TGTATCGATACATAC-TTTGGTGTATCGATACAT
95477 TGTATCGATACATACTTTGGTGTATCGATACA
1 TGTATCGATACATACTTTGGTGTATCGATACA
95509 AGTTTGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATACTTTGGTGTATCGATACAT
Found at i:95613 original size:20 final size:20
Alignment explanation
Indices: 95561--95615 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
95551 CATATTTTTG
*
95561 ATGTATCGATACATTGCAAC
1 ATGTATCGATACTTTGCAAC
95581 ATGTATCGATACTTTG-AAC
1 ATGTATCGATACTTTGCAAC
*
95600 TGTGTATCGATACTTT
1 -ATGTATCGATACTTT
95616 TAAGGGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 3 0.09
20 29 0.91
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACTTTGCAAC
Found at i:96209 original size:12 final size:12
Alignment explanation
Indices: 96192--96216 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
96182 TAAGGTAATT
96192 TTAGCAAATTTA
1 TTAGCAAATTTA
96204 TTAGCAAATTTA
1 TTAGCAAATTTA
96216 T
1 T
96217 GCATTCTCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (12 bp):
TTAGCAAATTTA
Found at i:98089 original size:13 final size:13
Alignment explanation
Indices: 98071--98109 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
98061 ATAATCCCCC
*
98071 TGTATCGATACAG
1 TGTATCGATACAA
98084 TGTATCGATACAA
1 TGTATCGATACAA
98097 TGTATCGATACAA
1 TGTATCGATACAA
98110 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:104316 original size:19 final size:19
Alignment explanation
Indices: 104259--104317 Score: 82
Period size: 20 Copynumber: 3.0 Consensus size: 19
104249 TACAAGCCAA
*
104259 TGTATCGATACAACTTTTTG
1 TGTATCGATACAA-TTTTGG
104279 TGTATCGATACATATTTTGG
1 TGTATCGATACA-ATTTTGG
*
104299 TGTATCGATACAAGTTTGG
1 TGTATCGATACAATTTTGG
104318 CTACTGCCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
19 6 0.17
20 29 0.81
21 1 0.03
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.42
Consensus pattern (19 bp):
TGTATCGATACAATTTTGG
Found at i:112280 original size:20 final size:20
Alignment explanation
Indices: 112255--112333 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
112245 AATGTCCAAA
112255 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATGTTTCT
* *
112275 ATGTATCGATACATCTGGAAATTCA
1 ATGTATCGATACA--T-G--TTTCT
*
112300 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATGTTTCT
*
112320 TTGTATCGATACAT
1 ATGTATCGATACAT
112334 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 29 0.60
22 1 0.02
23 2 0.04
25 16 0.33
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATGTTTCT
Found at i:112338 original size:13 final size:13
Alignment explanation
Indices: 112320--112356 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
112310 ACATTTTTCT
112320 TTGTATCGATACA
1 TTGTATCGATACA
112333 TTGTATCGATACA
1 TTGTATCGATACA
*
112346 CTGTATCGATA
1 TTGTATCGATA
112357 AAGGGGGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:112522 original size:21 final size:21
Alignment explanation
Indices: 112476--112522 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
112466 AAATCTTTTG
112476 CAAAA-TACTTGTTTTTCACTT
1 CAAAACTACTTGTTTTTCAC-T
112497 C-AAACTACTTCGTTTTTCA-T
1 CAAAACTACTT-GTTTTTCACT
112517 CAAAAC
1 CAAAAC
112523 CAGCATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 5 0.22
21 10 0.43
22 8 0.35
ACGTcount: A:0.32, C:0.23, G:0.04, T:0.40
Consensus pattern (21 bp):
CAAAACTACTTGTTTTTCACT
Found at i:114955 original size:13 final size:13
Alignment explanation
Indices: 114937--114962 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
114927 ACACCAAAGT
114937 ATGTATCGATACA
1 ATGTATCGATACA
114950 ATGTATCGATACA
1 ATGTATCGATACA
114963 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:114960 original size:33 final size:33
Alignment explanation
Indices: 114918--114980 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
114908 TAGCCAAACT
* *
114918 TGTATCGATACAC-CAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAAAT-TGTATCGATACAA
114951 TGTATCGATACACAAAAAATTGTATCGATA
1 TGTATCGATACACAAAAAATTGTATCGATA
114981 AATTGGCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 23 0.85
34 4 0.15
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:116466 original size:52 final size:52
Alignment explanation
Indices: 116391--116536 Score: 213
Period size: 52 Copynumber: 2.8 Consensus size: 52
116381 AATATGAAAT
* *
116391 TTTGCCTTCATGTATCAATACATTTATTAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTATTAGTGTATCGATACATCTGGGCAAA
*
116443 TTTGCCTGCATGTATCGATACATTT-TATAGTGTATCAATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTAT-TAGTGTATCGATACATCTGGGCAAA
*** *
116495 TTTGCCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 TTTGCCTGCATGTATCGATACATTTATTAGTGTATCGATACA
116537 ATGTATCGAT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 1 0.01
52 82 0.98
53 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTATTAGTGTATCGATACATCTGGGCAAA
Found at i:116543 original size:13 final size:13
Alignment explanation
Indices: 116525--116549 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
116515 CAAAGATCAG
116525 TGTATCGATACAA
1 TGTATCGATACAA
116538 TGTATCGATACA
1 TGTATCGATACA
116550 GTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:117178 original size:52 final size:52
Alignment explanation
Indices: 117076--117245 Score: 162
Period size: 52 Copynumber: 3.2 Consensus size: 52
117066 GATATTGGGT
* * * * *
117076 TTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCACGGTCAGCGACATTAGAC
1 TTAAAGATGAG-AAAA--ATGCCAATGTGCTGATTCAAGGTCAACAACATTGGAC
* **
117131 TTGAAGATGAGAAAAATGCCAATGTGCTGATTCAAGGTCAACAACATTGGGTT
1 TTAAAGATGAGAAAAATGCCAATGTGCTGATTCAAGGTCAACAACATT-GGAC
** * * * *
117184 TTAAAGATGATG-AAGGTGCCAATATGCTGATTCAATGCCAACAATATTGGAC
1 TTAAAGATGA-GAAAAATGCCAATGTGCTGATTCAAGGTCAACAACATTGGAC
117236 TTAAAGATGA
1 TTAAAGATGA
117246 AGATGAGAAA
Statistics
Matches: 96, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
52 41 0.43
53 40 0.42
54 5 0.05
55 10 0.10
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.26
Consensus pattern (52 bp):
TTAAAGATGAGAAAAATGCCAATGTGCTGATTCAAGGTCAACAACATTGGAC
Found at i:117282 original size:67 final size:68
Alignment explanation
Indices: 117186--117312 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
117176 ATTGGGTTTT
* * *
117186 AAAGATGATGAAGGTGCCAATATGCTGATTCAATGCCAACAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
117251 AGA
66 AGA
* * ** *
117254 AAAG-TGATAAAGATGCCAATATGTTGATTCACGGCCAATGATATTGGGCTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
117313 GAAAAAGGAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:117434 original size:43 final size:43
Alignment explanation
Indices: 117373--117507 Score: 171
Period size: 43 Copynumber: 3.0 Consensus size: 43
117363 GATGGAAAAA
117373 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
* * * *
117416 GTGCCAATGTGCTGATTCAAGGCCAACTACAATGGACTTAAAGAAGAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-----A-AAG
*
117465 GTGCCAATATGCTGATTCAAAGCCAGCTATATTGGACTTAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
117508 AAGAAGATGC
Statistics
Matches: 77, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
43 38 0.49
44 1 0.01
48 1 0.01
49 37 0.48
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (43 bp):
GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
Found at i:117495 original size:92 final size:94
Alignment explanation
Indices: 117316--117507 Score: 280
Period size: 92 Copynumber: 2.0 Consensus size: 94
117306 AAGATGAGAA
* * *
117316 AAAGGATGTCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAAGTGCCAAT
1 AAAGGATGCCAATATGCTGATTCAAGGCCAACTACAATGAACTTAAAGA--GAAAAAGTGCCAAT
*
117381 ATGCTGATTCAAGGCCAGCTATATTGGACTT
64 ATGCTGATTCAAAGCCAGCTATATTGGACTT
* * * *
117412 AAAGG-TGCCAATGTGCTGATTCAAGGCCAACTACAATGGACTTAAAGA-AGAAGGTGCCAATAT
1 AAAGGATGCCAATATGCTGATTCAAGGCCAACTACAATGAACTTAAAGAGAAAAAGTGCCAATAT
117475 GCTGATTCAAAGCCAGCTATATTGGACTT
66 GCTGATTCAAAGCCAGCTATATTGGACTT
117504 AAAG
1 AAAG
117508 AAGAAGATGC
Statistics
Matches: 88, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
92 45 0.51
95 38 0.43
96 5 0.06
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.24
Consensus pattern (94 bp):
AAAGGATGCCAATATGCTGATTCAAGGCCAACTACAATGAACTTAAAGAGAAAAAGTGCCAATAT
GCTGATTCAAAGCCAGCTATATTGGACTT
Found at i:117501 original size:49 final size:49
Alignment explanation
Indices: 117325--117519 Score: 231
Period size: 49 Copynumber: 4.0 Consensus size: 49
117315 AAAAGGATGT
* * *
117325 CAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAAGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA---AGAAGGTGC
*
117377 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT-----A-AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGC
* * *
117420 CAATGTGCTGATTCAAGGCCAACTACAATGGACTTAAAGAAGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGC
* * *
117469 CAATATGCTGATTCAAAGCCAGCTATATTGGACTTAAAGAAGAAGATGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGC
117518 CA
1 CA
117520 CCAACTTGTG
Statistics
Matches: 124, Mismatches: 13, Indels: 15
0.82 0.09 0.10
Matches are distributed among these distances:
43 37 0.30
44 1 0.01
48 1 0.01
49 52 0.42
52 33 0.27
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGC
Found at i:117549 original size:30 final size:28
Alignment explanation
Indices: 117528--117897 Score: 286
Period size: 29 Copynumber: 12.6 Consensus size: 28
117518 CACCAACTTG
*
117528 TGTGGGCTTTTGAAGGTTGCCATTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* *
117556 TGTGGGCTTTGGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTTG--AAGGTTGCCACTGACT
*
117586 TGTGGGCTTTTGAAGGTTGCCATTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* * *
117614 TGTGGGCTTTAGGAGAAGGGTGCCACTGATT
1 TGTGGGCTTT---TGAAGGTTGCCACTGACT
117645 TGTGGGC-TTTGAAAAAGAG-TGCCACTGACT
1 TGTGGGCTTTTG---AAG-GTTGCCACTGACT
* * *
117675 TGTGGGCTTTGGGAGAAGGGTGCCACTGATT
1 TGTGGGCTTT---TGAAGGTTGCCACTGACT
117706 TGTGGGC-TTTGAAAAAGAG-TGCCACTGACT
1 TGTGGGCTTTTG---AAG-GTTGCCACTGACT
*
117736 TGTGGGATTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* * *
117764 TGTGGGCTTTGGGAAAAGGGTGCCACTGATT
1 TGTGGGCTTT-TG--AAGGTTGCCACTGACT
* *
117795 TGTGGGC-TTTGAAAAAGATGCCACTGACT
1 TGTGGGCTTTTG--AAGGTTGCCACTGACT
* * * *
117824 TGTGGAC-TTTGAAAAAGATGCCATTGACT
1 TGTGGGCTTTTG--AAGGTTGCCACTGACT
117853 TGTGGGC-TTTGAAAAGGTTGCCACTGACT
1 TGTGGGCTTTTG--AAGGTTGCCACTGACT
117882 TGTGGGCTTTTGAAGG
1 TGTGGGCTTTTGAAGG
117898 GTGAGGAATG
Statistics
Matches: 287, Mismatches: 31, Indels: 48
0.78 0.08 0.13
Matches are distributed among these distances:
27 3 0.01
28 62 0.22
29 76 0.26
30 75 0.26
31 70 0.24
34 1 0.00
ACGTcount: A:0.21, C:0.15, G:0.34, T:0.31
Consensus pattern (28 bp):
TGTGGGCTTTTGAAGGTTGCCACTGACT
Found at i:117598 original size:58 final size:58
Alignment explanation
Indices: 117528--117900 Score: 386
Period size: 58 Copynumber: 6.3 Consensus size: 58
117518 CACCAACTTG
*
117528 TGTGGGCTTTTG-AAGGTTGCCATTGACTTGTGGGCTTTGGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTTGAAAGG-TGCCACTGACTTGTGGGCTTTGGAAAAGGGTGCCACTGACT
* * *
117586 TGTGGGCTTTTG-AAGGTTGCCATTGACTTGTGGGCTTTAGGAGAAGGGTGCCACTGATT
1 TGTGGGCTTTTGAAAGG-TGCCACTGACTTGTGGGCTTT-GGAAAAGGGTGCCACTGACT
* *
117645 TGTGGGC-TTTGAAAAAGAGTGCCACTGACTTGTGGGCTTTGGGAGAAGGGTGCCACTGATT
1 TGTGGGCTTTTG--AAAG-GTGCCACTGACTTGTGGGCTTT-GGAAAAGGGTGCCACTGACT
* * *
117706 TGTGGGC-TTTGAAAAAGAGTGCCACTGACTTGTGGGATTTTG--AAGGTTGCCACTGACT
1 TGTGGGCTTTTG--AAAG-GTGCCACTGACTTGTGGGCTTTGGAAAAGGGTGCCACTGACT
* * * *
117764 TGTGGGCTTTGGGAAAAGGGTGCCACTGATTTGTGGGCTTT-GAAAAAGATGCCACTGACT
1 TGTGGGCTTT-TG-AAA-GGTGCCACTGACTTGTGGGCTTTGGAAAAGGGTGCCACTGACT
* * * *
117824 TGTGGAC-TTTGAAAAAGATGCCATTGACTTGTGGGCTTT-GAAAAGGTTGCCACTGACT
1 TGTGGGCTTTTG--AAAGGTGCCACTGACTTGTGGGCTTTGGAAAAGGGTGCCACTGACT
*
117882 TGTGGGCTTTTGAAGGGTG
1 TGTGGGCTTTTGAAAGGTG
117901 AGGAATGGCT
Statistics
Matches: 280, Mismatches: 23, Indels: 25
0.85 0.07 0.08
Matches are distributed among these distances:
57 5 0.02
58 108 0.39
59 61 0.22
60 23 0.08
61 82 0.29
62 1 0.00
ACGTcount: A:0.21, C:0.14, G:0.34, T:0.31
Consensus pattern (58 bp):
TGTGGGCTTTTGAAAGGTGCCACTGACTTGTGGGCTTTGGAAAAGGGTGCCACTGACT
Found at i:117648 original size:89 final size:90
Alignment explanation
Indices: 117528--117891 Score: 404
Period size: 89 Copynumber: 4.1 Consensus size: 90
117518 CACCAACTTG
* * *
117528 TGTGGGCTTTTG--AAGGTTGCCATTGACTTGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGG
1 TGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGG
* *
117591 GCTTT-TG-AAGGTTGCCATTGACT
66 GCTTTGTGAAAGGGTGCCACTGACT
* * * *
117614 TGTGGGCTTTAGGAGAAGGGTGCCACTGATTTGTGGGCTTTGAAAAAGAGTGCCACTGACTTGTG
1 TGTGGGCTTT-GGAAAAGGGTGCCACTGACTTGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTG
* *
117679 GGCTTTGGGAGAAGGGTGCCACTGATT
65 GGCTTTGTGA-AAGGGTGCCACTGACT
* * * * *
117706 TGTGGGCTTTGAAAAAGAGTGCCACTGACTTGTGGGATTTTG--AAGGTTGCCACTGACTTGTGG
1 TGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGG
* *
117769 GCTTTGGGAAAAGGGTGCCACTGATT
66 GCTTTGTG-AAAGGGTGCCACTGACT
* * * * * *
117795 TGTGGGCTTT-GAAAAAGATGCCACTGACTTGTGGACTTT-GAAAAAGATGCCATTGACTTGTGG
1 TGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGG
* *
117858 GCTTTG-AAAAGGTTGCCACTGACT
66 GCTTTGTGAAAGGGTGCCACTGACT
117882 TGTGGGCTTT
1 TGTGGGCTTT
117892 TGAAGGGTGA
Statistics
Matches: 238, Mismatches: 31, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
86 10 0.04
87 27 0.11
88 23 0.10
89 128 0.54
90 2 0.01
91 25 0.11
92 23 0.10
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.31
Consensus pattern (90 bp):
TGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGG
GCTTTGTGAAAGGGTGCCACTGACT
Found at i:117810 original size:150 final size:145
Alignment explanation
Indices: 117539--117897 Score: 547
Period size: 150 Copynumber: 2.4 Consensus size: 145
117529 GTGGGCTTTT
*
117539 GAAGGTTGCCATTGACTTGTGGGCTTTGGAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGGTT
1 GAAGGATGCCATTGACTTGTGGGCTTT-GAAAA-GGTGCCACTGACTTGTGGGCTTTTGAAGGTT
* *
117604 GCCATTGACTTGTGGGCTTTAGGAGAAGGGTGCCACTGATTTGTGGGCTTTGAAAAAGAGTGCCA
64 GCCACTGACTTGTGGGCTTTAGGAAAAGGGTGCCACTGATTTGTGGGCTTTGAAAAAGA-TGCCA
*
117669 CTGACTTGTGGGCTTTGGGA
128 CTGACTTGTGGACTTT--GA
* * * *
117689 GAAGGGTGCCACTGATTTGTGGGCTTTGAAAAAGAGTGCCACTGACTTGTGGGATTTTGAAGGTT
1 GAAGGATGCCATTGACTTGTGGGCTTTG-AAAAG-GTGCCACTGACTTGTGGGCTTTTGAAGGTT
*
117754 GCCACTGACTTGTGGGCTTTGGGAAAAGGGTGCCACTGATTTGTGGGCTTTGAAAAAGATGCCAC
64 GCCACTGACTTGTGGGCTTTAGGAAAAGGGTGCCACTGATTTGTGGGCTTTGAAAAAGATGCCAC
117819 TGACTTGTGGACTTTGA
129 TGACTTGTGGACTTTGA
* *
117836 AAAAGATGCCATTGACTTGTGGGCTTTGAAAAGGTTGCCACTGACTTGTGGGCTTTTGAAGG
1 GAAGGATGCCATTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACTTGTGGGCTTTTGAAGG
117898 GTGAGGAATG
Statistics
Matches: 192, Mismatches: 14, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
145 1 0.01
146 31 0.16
147 25 0.13
149 22 0.11
150 113 0.59
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.30
Consensus pattern (145 bp):
GAAGGATGCCATTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTTGAAGGTTGC
CACTGACTTGTGGGCTTTAGGAAAAGGGTGCCACTGATTTGTGGGCTTTGAAAAAGATGCCACTG
ACTTGTGGACTTTGA
Found at i:119360 original size:18 final size:19
Alignment explanation
Indices: 119333--119376 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
119323 ATCCAGACCC
*
119333 TTTTTGTTGTTGTTGTTT-
1 TTTTTTTTGTTGTTGTTTG
*
119351 TTTTTTTTGTTTTTGTTTG
1 TTTTTTTTGTTGTTGTTTG
119370 TTTTTTT
1 TTTTTTT
119377 CTTCTTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (19 bp):
TTTTTTTTGTTGTTGTTTG
Found at i:119376 original size:25 final size:25
Alignment explanation
Indices: 119332--119409 Score: 84
Period size: 25 Copynumber: 3.0 Consensus size: 25
119322 CATCCAGACC
*
119332 CTTTTTGTTGTTGTTGTTTTTTTTTTT
1 CTTTTTG-T-TTGTTTTTTTTTTTTTT
* * *
119359 GTTTTTGTTTGTTTTTTTCTTCTTT
1 CTTTTTGTTTGTTTTTTTTTTTTTT
*
119384 CATTTTGTTTGTTTTTTTTTTGTTTT
1 CTTTTTGTTTGTTTTTTTTTT-TTTT
119410 TAGAGGATGC
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
25 32 0.76
26 4 0.10
27 6 0.14
ACGTcount: A:0.01, C:0.05, G:0.13, T:0.81
Consensus pattern (25 bp):
CTTTTTGTTTGTTTTTTTTTTTTTT
Found at i:119410 original size:21 final size:21
Alignment explanation
Indices: 119333--119410 Score: 86
Period size: 21 Copynumber: 3.5 Consensus size: 21
119323 ATCCAGACCC
*
119333 TTTTTGTTGTTG-TTGTTTTTT
1 TTTTTGTTTTTGTTTG-TTTTT
119354 TTTTTGTTTTTGTTTGTTTTT
1 TTTTTGTTTTTGTTTGTTTTT
*
119375 TTCTTCTTTCATTTTGTTTGTTTTT
1 TT-TT-TGT--TTTTGTTTGTTTTT
119400 TTTTTGTTTTT
1 TTTTTGTTTTT
119411 AGAGGATGCC
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
21 22 0.45
22 5 0.10
23 4 0.08
24 2 0.04
25 16 0.33
ACGTcount: A:0.01, C:0.04, G:0.13, T:0.82
Consensus pattern (21 bp):
TTTTTGTTTTTGTTTGTTTTT
Found at i:133329 original size:52 final size:52
Alignment explanation
Indices: 133254--133379 Score: 225
Period size: 52 Copynumber: 2.4 Consensus size: 52
133244 AATATGAAAT
*
133254 TTTGCCTGCATGTATCGATACATTTAATATTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
*
133306 TTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
*
133358 TTAGCCTGCATGTATCGATACA
1 TTTGCCTGCATGTATCGATACA
133380 AAGATCAGTG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
Found at i:133390 original size:52 final size:51
Alignment explanation
Indices: 133257--133399 Score: 207
Period size: 52 Copynumber: 2.7 Consensus size: 51
133247 ATGAAATTTT
* *
133257 GCCTGCATGTATCGATACATTTAATATTGTATCGATACATCTGGGCAAATTT
1 GCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTA
*
133309 GCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAATTA
1 GCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTA
*
133361 GCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 GCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
133400 GTTGAGTAAT
Statistics
Matches: 84, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 82 0.98
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (51 bp):
GCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTA
Found at i:133455 original size:33 final size:33
Alignment explanation
Indices: 133409--133498 Score: 171
Period size: 33 Copynumber: 2.7 Consensus size: 33
133399 AGTTGAGTAA
133409 TGTATCGATACATTTTTTGGCAGTAGCTTAAAT
1 TGTATCGATACATTTTTTGGCAGTAGCTTAAAT
*
133442 TGTATCGAGACATTTTTTGGCAGTAGCTTAAAT
1 TGTATCGATACATTTTTTGGCAGTAGCTTAAAT
133475 TGTATCGATACATTTTTTGGCAGT
1 TGTATCGATACATTTTTTGGCAGT
133499 CCCCACACAC
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATTTTTTGGCAGTAGCTTAAAT
Found at i:134650 original size:475 final size:474
Alignment explanation
Indices: 133586--144799 Score: 15463
Period size: 476 Copynumber: 23.6 Consensus size: 474
133576 TACAGTTTCT
* * * * *
133586 AATCTTGAAAAGAATGGAGATTGTTTCGGGAATCGATACTTGTCATATTCAAGAGATGAATTTTG
1 AATCTTGAAAAGAATGGAGACTGTTT-GAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
* * *
133651 ATTTTAAGGAAAATAGGGCAAACAAAAGATTTT-AGTGCAAAAGAAAACCATTAATATCATTTAT
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAACCATCAATATCATTTAT
* * * * * *
133715 CCTAATGAAGAGAATGTGCTCATAGTGCCTAATAAAAAAATGAATGAAGGTCATTACTAGAATCC
129 CCTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * *
133780 ATGTTGGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAAAAAGTCTTTCTT
194 ATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
* *
133845 GCGATGCCAAAACACCAATATATTGT-GCGCTTATGAGAAGACTATGTTTATGGTGCCTAATCCA
259 GCGATGCCAAAACACCAATATATTGTATC-CTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * *
133909 AAAAACAATGTGGATTAGTATGACTATTCATATTTCTCTTATTTAAGAGACAAAACTTTGATTAT
323 AAAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGAC-AAACTTTGATTAT
* * * *
133974 ATTAAAAACGGTGGAAGGAAAAGCTTTGCTTGCGACACCAAAGCATCAATGTCATGTATATAAAT
387 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT
**
134039 GATGGAAATGTGTTCTTGGTTCCC
452 -ATGGGTATGTGTTCTTGGTTCCC
* * ** *
134063 AATCTTTAAAAGAATGGAGATTGTTTCGAGAATTGATGCTT-TCATATTTAAGAGATGAATTTTT
1 AATCTTGAAAAGAATGGAGACTGTTT-GAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
* *
134127 ATTTTAAGGAAAATAGGGAAAAGAAAAG-TTTTCCATGCAAAA-AAAACCATCAATATCATTTAT
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTT-CATGCAAAAGAAAACCATCAATATCATTTAT
* * * * *
134190 CCTAATGAGGAGAATGTGTTTATACTGCCTAATTACAAAATGAATGAATATCATTAATAGAATCC
129 CCTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * *
134255 AAGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAATTGGTTGAAAGAAAGCTTTTCTT
194 ATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
* * * *
134320 GCGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTA
259 GCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA
** * * *
134385 AAAAGAATGGGGATTATTATGACTATTCATGCATCTCTTATTTAAAAGACAAGCTTTGATTATTT
324 AAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTATAT
* *
134450 AAAAAACGGTGGAAAG-AAAGCTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCTAAATAT
389 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATA-
*
134514 TGGGTATGTGTTCTTGGTTCCT
453 TGGGTATGTGTTCTTGGTTCCC
*
134536 AATCTTGAAAAGAATGGAGACTGTTCTGAGAAACGATGCTTGTCATATTTAAGAGATGAATTTCG
1 AATCTTGAAAAGAATGGAGACTGTT-TGAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
**
134601 ATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATC-TTTGAT
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTT-AT
* * * * * * *
134665 CCCAACGAGGAGAATATGGTTATAGTGCCTAATCACAAAATGAATGAAAATCATTTCTGGAGTCC
129 CCTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* **
134730 ATGTTTGCCTCATTTGAGGCACGAATTTATTCTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
194 ATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
* * * *
134795 GCGATGCCTAAACACCAATATATTGTATCCTTATGAGATGACTATGTTTATGGTGCCTAATCTTG
259 GCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* * * *
134860 AAAAGAATGGGGATTAGTT-TGGCTATTCATGTTTTTCTTATTTAAAAGATAAAACTTTGATTAT
324 AAAAGAATGGGGATTA-TTATGACTATTCATGTTTCTCTTATTTAAGAGA-CAAACTTTGATTAT
*
134924 ATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC-AAAT
387 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT
* * *
134988 GATGTGTATGTGTCCTTGGTTCCT
452 -ATGGGTATGTGTTCTTGGTTCCC
* *
135012 AATCTTGAAAAGAATGGAGACTGTTTTAGGAATCGATGCTTGTCATATTTAAGAGATGAATTTTG
1 AATCTTGAAAAGAATGGAGACTGTTTGA-GAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
* *
135077 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-AGTGCAAAAGAAAACCATTAATATCATTTAT
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAACCATCAATATCATTTAT
* * * * **
135141 CCTAATGAGAAGAATGTGCTCATAGTGCCTAATCAAAAAATGAATGAAGGCCATTACTAGAATCC
129 CCTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * *
135206 ATGTTGGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGCTTGAAAGAAAGTCTTTCTT
194 ATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
* * ** * * *
135271 GCGAAGCCATAACACCAATATATTGTGCCCTTATGAGAAGACTATATTTACGGTGCCTAATCCAA
259 GCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* * * * *
135336 AAAAGAATGTGGATTAGTATAACTATTCTTATTTCTCTTATTTAAGAGACAAAACTTTGATTATA
324 AAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGAC-AAACTTTGATTATA
** * * *
135401 TCAAAAACGGTGGATGGAAAAGCTTTCCTTGCGACACCAAAGCTTCAATGTCAAGTATCTAAATG
388 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT-
**
135466 ATGGAAATGTGTTCTTGGTTCCC
452 ATGGGTATGTGTTCTTGGTTCCC
* *
135489 AATCCTT-AAAAGAATGGAGACTGTTTCGAG-AATGCATGCTT-TGATATTTAAGAGATGAATTT
1 AAT-CTTGAAAAGAATGGAGACTGTTT-GAGAAACG-ATGCTTGTCATATTTAAGAGATGAATTT
* * *
135551 TTATTTTAAGGAAAAT-AGTGAAAACAAAAG-TTTTCCATGCAAAA-AAAACCATCAATATCATT
63 TGATTTTAAGGAAAATAAG-GCAAAGAAAAGATTTT-CATGCAAAAGAAAACCATCAATATCATT
* *
135613 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAATAGAA
126 TATCCTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* *
135678 TCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAATTGGTTGAAAGAAAGCCTTT
191 TCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTT
* * * *
135743 CTTGCGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATC
256 CTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC
* * * *
135808 CTAAAAAGAATGGGGATAATTATGACTATTCATGCTTCTCTTATTTGAGAGACAAACTTTGATTC
321 CTAAAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTA
* *
135873 TTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCTAAA
386 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAA
135938 TATTGGGTATGTGTTCTTGGTTCCC
451 TA-TGGGTATGTGTTCTTGGTTCCC
* *
135963 AATCTTGAAAAGAATGGAGACTGTTTTGAGAAACGATGCTTGTCATATTTAAGAAATGAATTTCG
1 AATCTTGAAAAGAATGGAGACTG-TTTGAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
** *
136028 ATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCTTTTATC
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
* ** * * * *
136093 CCAATGAGGAGAACATGGTTATAGTGCCTAATCACAAAATGAATGAAAATCATTTCTGGAGTCCA
130 CTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* ** *
136158 TGTTTGCCTCATTTGAGGCACGAATTTATTCTTTGCAATAATTGGTTGAAATAAAGCCTTTCTTG
195 TGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
* * *
136223 CGATGCCTAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGA
260 CGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
* * * * * *
136288 AAAGAATGGAGATTAGTATGGCTATTCATGTTTTTCTTATTTAAAAGATAAAACTTTGATTATAT
325 AAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGA-CAAACTTTGATTATAT
* *
136353 CAAAAACGGTGGAAAGGAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC-AAATAA
389 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT-A
* *
136417 TGGGTATGTGTCCTTGGTTCCT
453 TGGGTATGTGTTCTTGGTTCCC
* * *
136439 AATCTTGAAAAGACTGGAGACTGTTTCAGGAATCGATGCTTGTCATATTTAAGAGATGAATTTTG
1 AATCTTGAAAAGAATGGAGACTGTTTGA-GAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
* *
136504 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-AGTGCAAAAGAAAACCATTAATATCATTTAT
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAACCATCAATATCATTTAT
* * * * *
136568 CCTAATGAGAAGAATGTGCTCATAGTGCCTAATCAAAAAATGAATGAAGGTCATTACTAGAATCC
129 CCTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * *
136633 ATGTTGGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTAGTTGAAAGAAAGTCTTTCTT
194 ATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
** *
136698 GCGATGCCAAAACACCAATATATTGTGCCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAA
259 GCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* * *
136763 AAAAGAATGTGGATTAGTATGACTATTCATATTTCTCTTATTTAAGAGACAAAACTTTGATTATA
324 AAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGAC-AAACTTTGATTATA
* * *
136828 TCAAAAACGGTGGAAGGAAAAGCTTTGCTTGCGACACCAAAGCATCAATGTCATGTATATAAATG
388 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT-
**
136893 ATGGAAATGTGTTCTTGGTTCCC
452 ATGGGTATGTGTTCTTGGTTCCC
* ** *
136916 AATCTTTAAAAGAATGGAGACTGTTTCGAGAATTGATGCTT-TCATATTTAAGAGATGAATTTTT
1 AATCTTGAAAAGAATGGAGACTGTTT-GAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
* * * * *
136980 ATTCTAAGGAAAATAGGGAAAAGAAAAGTTTTTCATGCAAAAAAAAACCATCAATATCATTTATC
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
* *
137045 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAATAGAATCCA
130 CTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* *
137110 TGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAATTGGTTGAAAGAAAGCCTTTCTTG
195 TGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
* * * *
137175 CGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTAA
260 CGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
* * * * *
137240 AAAGAATGGGGATAATTATGACTATTCATGCTTCTCTTATTTGAGAGACAAACTTTGATTCTTTC
325 AAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTATATC
*
137305 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCTAAATATT
390 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATA-T
137370 GGGTATGTGTTCTTGGTTCCC
454 GGGTATGTGTTCTTGGTTCCC
* *
137391 AATCTTGAAAAGAATGGAGACTGTTTTGAGAAACAATGCTTGTCATATTTAAGA-ATTGAATTTC
1 AATCTTGAAAAGAATGGAGACTG-TTTGAGAAACGATGCTTGTCATATTTAAGAGA-TGAATTTT
** *
137455 GATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCTTTTAT
64 GATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTAT
* ** * * *
137520 CCCAATGAGGAGAACATGGTTATAGTGCCTAATCACAAAATGAATGAAAATCATTTA-TGGAGTC
129 CCTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCA-TTACTAGAATC
* ** *
137584 CATGTTTGCCTCATTTGAGGCACGAATTTATTCTTTGCAATAATTGGTTGAAATAAAGCCTTTCT
193 CATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCT
* *
137649 TGCGATGCCTAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCT
258 TGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * *
137714 AAAAAGAATGGGGATAATTATGACTATTCATGCTTCTCTTATTTGAGAGACAAACTTTGATTCTT
323 AAAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTATA
*
137779 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCTAAATA
388 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATA
137844 TTGGGTATGTGTTCTTGGTTCCC
453 -TGGGTATGTGTTCTTGGTTCCC
* * *
137867 AATCTTGAAAAGAATGGAGACTGTTTTGAGAAACAATGCTTGTCATATTTAAGAAATGAATTTCG
1 AATCTTGAAAAGAATGGAGACTG-TTTGAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
** *
137932 ATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCTTTTATC
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
* ** * * *
137997 CCAATGAGGAGAACATGGTTATAGTGCCTAATCACAAAATGAATGAAAATCATTTA-TGGAGTCC
130 CTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCA-TTACTAGAATCC
* ** *
138061 ATGTTTGCCTCATTTGAGGCACGAATTTATTCTTTGCAATAATTGGTTGAAATAAAGCCTTTCTT
194 ATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
* *
138126 GCGATGCCTAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAA
259 GCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* * * *
138191 AAAACAATGTGGATTAGTT-TGACTATTCATATCTCTCTTATTTAAGAGACAAAACTTTGATTAT
324 AAAAGAATGGGGATTA-TTATGACTATTCATGTTTCTCTTATTTAAGAGAC-AAACTTTGATTAT
* * * *
138255 ATTAAAAACGGTGGAAGGAAAAGCTTTGCTTGCGACACCAAAGCATCAATGTCATGTATATAAAT
387 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT
**
138320 GATGGAAATGTGTTCTTGGTTCCC
452 -ATGGGTATGTGTTCTTGGTTCCC
* * ** *
138344 AATCTTTAAAAGAATGGAGATTGTTTCGAGAATTGATGCTT-TCATATTTAAGAGATGAATTTTT
1 AATCTTGAAAAGAATGGAGACTGTTT-GAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
* *
138408 ATTTTAAGGAAAATAGGGAAAAGAAAAG-TTTTCCATGCAAAA-AAAACCATCAATATCATTTAT
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTT-CATGCAAAAGAAAACCATCAATATCATTTAT
* * * * *
138471 CCTAATGAGGAGAATGTGTTTATACTGCCTAATTACAAAATGAATGAATATCATTAATAGAATCC
129 CCTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * *
138536 AAGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAATTGGTTGAAAGAAAGCTTTTCTT
194 ATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
* * * *
138601 GCGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTA
259 GCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA
** * * * *
138666 AAAAGAATGGGGATTATTATGACTATTCATGCATATCTTATTTAAAAGACAAGCTTTGATTATTT
324 AAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTATAT
* *
138731 AAAAAACGGTGGAAAG-AAAGCTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCTAAATAT
389 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATA-
138795 TGGGTATGTGTTCTTGGTTCCC
453 TGGGTATGTGTTCTTGGTTCCC
*
138817 AATCTTGAAAAGAATGGAGACTGTTCTGAGAAACGATGCTTGTCATATTTAAGAGATGAATTTCG
1 AATCTTGAAAAGAATGGAGACTGTT-TGAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
** * *
138882 ATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCTTTTATC
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
* * * * * * *
138947 CCAATGAGGAGAATATGGTTATAGTGCCTAATCACAGAATGAATGAAAATCATTTCTGGAGTCCA
130 CTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* **
139012 TGTTTGCCTCATTTGAGGCACGAATTTATTCTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
195 TGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
* * * *
139077 CGATGCCTAAACACCAATATATTGTATCCTTATGAGATGACTATGTTTATGGTGCCTAATCTTGA
260 CGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
* * * *
139142 AAAGAATGGGGATTAGTT-TGGCTATTCATGTTTTTCTTATTTAAAAGATAAAACTTTGATTATA
325 AAAGAATGGGGATTA-TTATGACTATTCATGTTTCTCTTATTTAAGAGA-CAAACTTTGATTATA
*
139206 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCGTCAATGTCATGTATC-AAATG
388 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT-
* * *
139270 ATGTGTATGTGTCCTTGGTTCCT
452 ATGGGTATGTGTTCTTGGTTCCC
* * *
139293 AATCGTGAAAAGAATGGAGACTGTTTTAGGAATCGATGCTTGTCATATTTAAGAGATGAATTTTG
1 AATCTTGAAAAGAATGGAGACTGTTTGA-GAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
* *
139358 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-AGTGCAAAAGAAAACCATTAATATC-TTTAT
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAACCATCAATATCATTTAT
* * * * * **
139421 CCTAATGTGAAGAATGTGCTCATAGTGCCTAATCAAAAAATGAATGAAGGCCATTACTAGAATCC
129 CCTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * *
139486 ATGTTGGTCTCATTTGAGGTACGAATTTAGACTTTGCAATAATTGCTTGAAAGAAAGTCTTTCTT
194 ATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
* ** * *
139551 GCGATGCCATAACACCAATATATTGTGCCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAA
259 GCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* * * * * *
139616 AAAAAAATGTGGATTAGTATAACTATTCTTATTTCTCTTATTTAAGAGACAAAACTTTGATTATA
324 AAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGAC-AAACTTTGATTATA
** * * *
139681 TCAAAAACGGTGGATGGAAAAGCTTTCCTTGCGACACCAAAGCTTCAATGTCAAGTATCTAAATG
388 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT-
**
139746 ATGGAAATGTGTTCTTGGTTCCC
452 ATGGGTATGTGTTCTTGGTTCCC
* *
139769 AATCCTT-AAAAGAATGGAGACTGTTTCGAG-AATGCATGCTT-TGATATTTAAGAGATGAATTT
1 AAT-CTTGAAAAGAATGGAGACTGTTT-GAGAAACG-ATGCTTGTCATATTTAAGAGATGAATTT
* * * * *
139831 TTATTTTAAGGAAAAT-AGTGAAAAGGAAAG-TTTTCCGTGCAAAA-ACAACCATCAATATCATT
63 TGATTTTAAGGAAAATAAG-GCAAAGAAAAGATTTT-CATGCAAAAGAAAACCATCAATATCATT
* * *
139893 TATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAATAGAA
126 TATCCTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* *
139958 TCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAATTGGTTGAAAGAAAGCCTTT
191 TCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTT
* * * *
140023 CTTGCGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATC
256 CTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC
*
140088 CTAAAAAGAATGGGGATTATTATGACTATTCATGCTTCTCTTATTTAAGAGACAAACTTTGATTA
321 CTAAAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTA
* *
140153 TTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCTAAA
386 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAA
*
140218 TATTGGGTACGTGTTCTTGGTTCCC
451 TA-TGGGTATGTGTTCTTGGTTCCC
** * * *
140243 AATCTTGAAAAGAATATACACTGTTCTGAGAAATGATGCTTGTCATATTTAAGAGATGAATTTCG
1 AATCTTGAAAAGAATGGAGACTGTT-TGAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
** *
140308 ATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCTTTTATC
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
* * * * * * *
140373 CCAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAATTAATGAAAATCATTTCTGGAGTCCA
130 CTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * **
140438 TGTTTGCCTCATTTGAGGCACGAATTAATTCTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
195 TGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
* * * *
140503 CGATGCCTAAACACCAATATATTGTATCCTTATGAGATGACTATGTTTATGGTGCCTAATCTTGA
260 CGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
* * * *
140568 AAAGAATGGGGATTAGTT-TGGCTATTCATGTTTTTCTTATTTAAAAGATAAAACTTTGATTATA
325 AAAGAATGGGGATTA-TTATGACTATTCATGTTTCTCTTATTTAAGAGA-CAAACTTTGATTATA
* *
140632 TGAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC-AAATG
388 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT-
* * *
140696 ATGTGTATGTGTCCTTGGTTCCT
452 ATGGGTATGTGTTCTTGGTTCCC
* *
140719 AATCTTGAAAAGAATGGAGACTGTTTTAGGAATCGATGCTTGTCATATTTAAGAGATGAATTTTG
1 AATCTTGAAAAGAATGGAGACTGTTTGA-GAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
* *
140784 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-AGTGCAAAAGAAAACCATTAATATC-TTTAT
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAACCATCAATATCATTTAT
* * * **
140847 CCTAATGTGAAGAATGT-GTTCATAGTGCCTAATCAAAAAATGAATGAAGGCCATTACTAGAATC
129 CCTAATGAGGAGAATGTGGTT-ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * ** *
140911 CATGTTGGTCTCATTTGAGGTACGAATTTAGACTTTGCAATAATTACTTGAAAGAAAGTCTTTCT
193 CATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCT
* ** * *
140976 TGCGATGCCATAACACCAATATATTGTGCCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCA
258 TGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * *
141041 AAAAAGAATGTGGATTAGTATAACTATTCTTATTTCTCTTATTTAAGAGACAAAACTTTGATTAT
323 AAAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGAC-AAACTTTGATTAT
** * * *
141106 ATCAAAAACGGTGGATGGAAAAGCTTTCCTTGCGACACCAAAGCTTCAATGTCAAGTATCTAAAT
387 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT
**
141171 GATGGAAATGTGTTCTTGGTTCCC
452 -ATGGGTATGTGTTCTTGGTTCCC
* *
141195 AATCCTT-AAAAGAATGGAGACTGTTTCGAG-AATGCATGCTT-TGATATTTAAGAGATGAATTT
1 AAT-CTTGAAAAGAATGGAGACTGTTT-GAGAAACG-ATGCTTGTCATATTTAAGAGATGAATTT
* * * *
141257 TTATTTTAAGGAAAAT-AGTGAAAAGGAAAG-TTTTCCGTGCAAAA-AAAACCATCAATATCATT
63 TGATTTTAAGGAAAATAAG-GCAAAGAAAAGATTTT-CATGCAAAAGAAAACCATCAATATCATT
* * *
141319 TATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAATAGAA
126 TATCCTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * *
141384 TCCATGTTTGTCTCATTTGAGGCATGAATTTATACTTTACAATAATTGGTTGAAAGAAAGCCTTT
191 TCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTT
* * * *
141449 CTTGCGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATC
256 CTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC
*
141514 CTAAAAAGAATGGGGATTATTATGACTATTCATGCTTCTCTTATTTAAGAGACAAACTTTGATTA
321 CTAAAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTA
* *
141579 TTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCTAAA
386 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAA
*
141644 TATTGGGTACGTGTTCTTGGTTCCC
451 TA-TGGGTATGTGTTCTTGGTTCCC
* * * *
141669 AATCTTGAAAAGAATGGAGACTATCCTGAGAAATGATGCTTGTCATATTTAAGAGATGAATTTTA
1 AATCTTGAAAAGAATGGAGACTGT-TTGAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
** *
141734 ATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCTTTTATC
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
* * * * * * *
141799 CCAAAGAGGAGAATATGGTTATAGTGCCTAATCACAAAATGAATGAAAATCATTTCTGGAGTCCA
130 CTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * **
141864 TGTTTGCCTCATTTGAGGCACGAATTAATTCTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
195 TGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
* * * *
141929 CGATGCCTAAACACCAATATATTGTATCCTTATGAGATGACTATGTTTATGGTGCCTAATCTTGA
260 CGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
* * * * *
141994 AAAGAATGGGGATTAGTATGGCTATTCATGTTTTTCTTATTTAAAAGATAAAACTTTGATTATAT
325 AAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGA-CAAACTTTGATTATAT
* *
142059 CAAAAACGGTGGAAAGGAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC-AAATAA
389 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT-A
* *
142123 TGGGTATGTGTCCTTGGTTCCT
453 TGGGTATGTGTTCTTGGTTCCC
* *
142145 AATCTTGAAAAGAATGGAGACTGTTTCAAGAATCGATGCTTGTCATATTTAAGAGATGAATTTTG
1 AATCTTGAAAAGAATGGAGACTGTTT-GAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
* *
142210 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-AGTGCAAAAGAAAACCATTAATATCATTTAT
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAACCATCAATATCATTTAT
* * * * *
142274 CCTAATGAGAAGAATGTGCTCATAGTGCCTAATCAAAAAATGAATGAAGGTCATTACTAGAATCC
129 CCTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * *
142339 GTGTTGGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTAGTTGAAAGAAAGTCTTTCTT
194 ATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
* ** *
142404 GCGATGCCATAACACCAATATATTGTGCCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAA
259 GCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* * * *
142469 AAAAGAATGTGGATTAGTATGACTATTAATATTTCTCTTATTTAAGAGACAAAACTTTGATTATA
324 AAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGAC-AAACTTTGATTATA
* * *
142534 TCAAAAACGGTGGAAGGAAAAGCTTTGCTTGCGACACCAAAGCATCAATGTCATGTATATAAATG
388 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT-
**
142599 ATGGAAATGTGTTCTTGGTTCCC
452 ATGGGTATGTGTTCTTGGTTCCC
* ** *
142622 AATCTTTAAAAGAATGGAGACTGTTTCGAGAATTGATGCTT-TCATATTTAAGAGATGAATTTTT
1 AATCTTGAAAAGAATGGAGACTGTTT-GAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
* * * *
142686 ATTTGAAGGAAAATAGGGAAAAGAAAAGTTTTTCATGCAAAA-AAAACCATCAATATCATTTATC
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
* *
142750 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAATAGAATCCA
130 CTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * *
142815 TGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAATTGGTTGAAAGAAAGCTTTTCTTG
195 TGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
* * * * *
142880 CGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTTA
260 CGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
** * * * *
142945 AAAGAATGGGGATTATTATGACTATTCATGCATCTCTTATTTAAAAGACAAGCTTTGATTATTTA
325 AAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTATATC
*
143010 AAAAACGGTGGAAAG-AAAGCTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCTAAATATT
390 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATA-T
143074 GGGTATGTGTTCTTGGTTCCC
454 GGGTATGTGTTCTTGGTTCCC
* * *
143095 AATCTTGAAAAGAATGAAGACTGTTCTGAGAAACGATGCTTGTCATATTTAAGAAATGAATTTCG
1 AATCTTGAAAAGAATGGAGACTGTT-TGAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
** *
143160 ATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCTTTTATC
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
* * * * * *
143225 CCAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAATGAATGAAAATCATTTCTGGAGTCCA
130 CTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* **
143290 TGTTTGCCTCATTTGAGGCACGAATTTATTCTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
195 TGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
* * * *
143355 CGATGCCTAAACACCAATATATTGTATCCTTATGAGATGACTTTGTTTATGGTTCCTAATCCTAA
260 CGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
* * * *
143420 AAAGAATGGCGATTAGTATGACTATTCATG-------TA--AAAGATA-AAACTTTGATTATATC
325 AAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTATATC
* * * *
143475 AAAAACGCTGGAAAGGAAAGTTTTTCTTGCGACACCAAAGCATCAATGTTATGTATC-AAATAAT
390 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT-AT
* *
143539 GGGTATGTGTCCTTGGTTCCT
454 GGGTATGTGTTCTTGGTTCCC
* * * *
143560 AATCTTGAAAAGAATGGAGACTGTTTTAGGAATCGATGCTTGTCATTTTTAAGAGATGAATCTTG
1 AATCTTGAAAAGAATGGAGACTGTTTGA-GAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
* *
143625 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-AGTGCAAAAGAAAACCATTAATATCATTTAT
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAACCATCAATATCATTTAT
* * * * *
143689 CCTAATGAGAAGAATGTGCTCATAGTGCCTAATCAAAAAATGAATGAAGGTCATTACTAGAATCC
129 CCTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * *
143754 ATGTTGGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTAGTTGAAAGAAAGTCTTTCTT
194 ATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
** *
143819 GCGATGCCAAAACACCAATATATTGTGCCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAA
259 GCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* * *
143884 AAAAGAATGTGGATTAGTATGACTATTCATATTTCTCTTATTTAAGAGACAAAACTTTGATTATA
324 AAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGAC-AAACTTTGATTATA
* * *
143949 TCAAAAACGGTGGAAGGAAAAGCTTTGCTTGCGACACCAAAGCATCAATGTCATGTATATAAATG
388 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT-
**
144014 ATGGAAATGTGTTCTTGGTTCCC
452 ATGGGTATGTGTTCTTGGTTCCC
* ** *
144037 AATCTTTAAAAGAATGGAGACTGTTTCGAGAATTGATGCTT-TCATATTTAAGAGATGAATTTTT
1 AATCTTGAAAAGAATGGAGACTGTTT-GAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
* * *
144101 ATTTTAAGGAAAATAGGGAAAAGAAAAGTTTTTCATGCAAAA-AAAACCATCAATATCATTTATC
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
* *
144165 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAATAGAATCCA
130 CTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * *
144230 TGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAATTGGTTGAAAGAAAGCTTTTCTTG
195 TGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
* * * * * *
144295 TGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTTA
260 CGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
** * * * *
144360 AAAGAATGGGGATTATTATGACTATTCATGCATCTCTTATTTAAAAGACAAGCTTTGATTATTTA
325 AAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTATATC
*
144425 AAAAACGGTGGAAAG-AAAGCTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCTAAATATT
390 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATA-T
144489 GGGTATGTGTTCTTGGTTCCC
454 GGGTATGTGTTCTTGGTTCCC
* * *
144510 AATCTTGAAAAGAATGAAGACTGTTCTGAGAAACGATGCTTGTCATATTTAAGAAATGAATTTCG
1 AATCTTGAAAAGAATGGAGACTGTT-TGAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTG
** *
144575 ATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCTTTTATC
65 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
* * * * * *
144640 CCAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAATGAATGAAAATCATTTCTGGAGTCCA
130 CTAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * **
144705 TGTTTGCCTCATTTGTGGCACGAATTTATTCTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
195 TGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
*
144770 CGATGCCTAAACACCAATATATTGTATCCT
260 CGATGCCAAAACACCAATATATTGTATCCT
144800 AATAAAAGGT
Statistics
Matches: 9501, Mismatches: 1095, Indels: 284
0.87 0.10 0.03
Matches are distributed among these distances:
464 3 0.00
465 362 0.04
466 43 0.00
468 2 0.00
472 6 0.00
473 403 0.04
474 742 0.08
475 3429 0.36
476 3801 0.40
477 703 0.07
478 7 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (474 bp):
AATCTTGAAAAGAATGGAGACTGTTTGAGAAACGATGCTTGTCATATTTAAGAGATGAATTTTGA
TTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCC
TAATGAGGAGAATGTGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
GTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTGC
GATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAA
AAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTATATCA
AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATATGG
GTATGTGTTCTTGGTTCCC
Found at i:138968 original size:950 final size:951
Alignment explanation
Indices: 133586--144799 Score: 15482
Period size: 950 Copynumber: 11.8 Consensus size: 951
133576 TACAGTTTCT
* * * *
133586 AATCTTGAAAAGAATGGAGATTGTTTCGGGAATCGATACTTGTCATATTCAAGAGATGAATTTTG
1 AATCTTGAAAAGAATGGAGACTGTTTCGAGAATCGATGCTTGTCATATTTAAGAGATGAATTTTG
* *
133651 ATTTTAAGGAAAATAGGGCAAACAAAAGATTTT-AGTGCAAAAGAAAACCATTAATATCATTTAT
66 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAACCATCAATATCATTTAT
* * * * *
133715 CCTAATGAAGAGAATGTGCTCATAGTGCCTAATAAAAAAATGAATGAAGGTCATTACTAGAATCC
130 CCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * *
133780 ATGTTGGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAAAAAGTCTTTCTT
195 ATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
* *
133845 GCGATGCCAAAACACCAATATATTGT-GCGCTTATGAGAAGACTATGTTTATGGTGCCTAATCCA
260 GCGATGCCAAAACACCAATATATTGTATC-CTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * *
133909 AAAAACAATGTGGATTAGTATGACTATTCATATTTCTCTTATTTAAGAGACAAAACTTTGATTAT
324 AAAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGAC-AAACTTTGATTAT
* * * *
133974 ATTAAAAACGGTGGAAGGAAAAGCTTTGCTTGCGACACCAAAGCATCAATGTCATGTATATAAAT
388 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT
** * * **
134039 GATGGAAATGTGTTCTTGGTTCCCAATCTTTAAAAGAATGGAGATTGTTTCGAGAATTGATGCTT
453 GATGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTT-GAGAAACGATGCTT
* * *
134104 -TCATATTTAAGAGATGAATTTTTATTTTAAGGAAAATAGGGAAAAGAAAAG-TTTTCCATGCAA
517 GTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTT-CATGCAA
* * * *
134167 AA-AAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATACTGCCTAATTACAAAAT
581 AAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAAT
* * * * *
134231 GAATGAATATCATTAATAGAATCCAAGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATA
646 GAATGAAGATCATTTATAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATA
* * * *
134296 ATTGGTTGAAAGAAAGCTTTTCTTGCGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGA
711 ATTGGTTGAAAGAAAGCCTTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGA
* **
134361 CTATGTTTATGGTACCTAATCCTAAAAAGAATGGGGATTA-TTATGACTATTCATGCATCTCTTA
776 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTT-TGACTATTCAT-TTTCTCTTA
* * * * *
134425 TTTAAAAGAC-AAGCTTTGATTATTTAAAAAACGGTGGAAAG-AAAGCTTTTCTTGCGACACCAA
839 TTTAAGAGACAAAACTTTGATTATATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGACACCAA
* *
134488 AGCATCAATTTCATGTATCTAAAT-ATTGGGTATGTGTTCTTGGTTCCT
904 AGCATCAATGTCATGTATCTAAATGA-TGGGTATGTGTTCTTGGTTCCC
* *
134536 AATCTTGAAAAGAATGGAGACTG-TTCTGAGAAACGATGCTTGTCATATTTAAGAGATGAATTTC
1 AATCTTGAAAAGAATGGAGACTGTTTC-GAGAATCGATGCTTGTCATATTTAAGAGATGAATTTT
** *
134600 GATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATC-TTTGA
65 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTT-A
* * * * * * * *
134664 TCCCAACGAGGAGAATATGGTTATAGTGCCTAATCACAAAATGAATGAAAATCATTTCTGGAGTC
129 TCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* **
134729 CATGTTTGCCTCATTTGAGGCACGAATTTATTCTTTGCAATAATTGGTTGAAAGAAAGCCTTTCT
194 CATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCT
* * *
134794 TGCGATGCCTAAACACCAATATATTGTATCCTTATGAGATGACTATGTTTATGGTGCCTAATCTT
259 TGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * *
134859 GAAAAGAATGGGGATTAGTT-TGGCTATTCATGTTTTTCTTATTTAAAAGATAAAACTTTGATTA
324 AAAAAGAATGGGGATTA-TTATGACTATTCATGTTTCTCTTATTTAAGAGA-CAAACTTTGATTA
*
134923 TATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC-AAA
387 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAA
* * * * *
134987 TGATGTGTATGTGTCCTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTTTAGGAATCGATGCT
452 TGATGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTGA-GAAACGATGCT
*
135052 TGTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-AGTGCA
516 TGTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA-TGCA
* * * * * *
135116 AAAGAAAACCATTAATATCATTTATCCTAATGAGAAGAATGTGCTCATAGTGCCTAATCAAAAAA
580 AAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAA
** *
135181 TGAATGAAGGCCA-TTACTAGAATCCATGTTGGTCTCATTTGAGGCACGAATTTAGACTTTGCAA
645 TGAATGAAGATCATTTA-TAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAA
* * * * **
135245 TAATTGCTTGAAAGAAAGTCTTTCTTGCGAAGCCATAACACCAATATATTGTGCCCTTATGAGAA
709 TAATTGGTTGAAAGAAAGCCTTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAA
* * * * * * *
135310 GACTATATTTACGGTGCCTAATCCAAAAAAGAATGTGGATTAGTATAACTATTCTTATTTCTCTT
774 GACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGACTATTCAT-TTTCTCTT
* *
135375 ATTTAAGAGACAAAACTTTGATTATATCAAAAACGGTGGATGGAAAAGCTTTCCTTGCGACACCA
838 ATTTAAGAGACAAAACTTTGATTATATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGACACCA
* * **
135440 AAGCTTCAATGTCAAGTATCTAAATGATGGAAATGTGTTCTTGGTTCCC
903 AAGCATCAATGTCATGTATCTAAATGATGGGTATGTGTTCTTGGTTCCC
*
135489 AATCCTT-AAAAGAATGGAGACTGTTTCGAGAAT-GCATGCTT-TGATATTTAAGAGATGAATTT
1 AAT-CTTGAAAAGAATGGAGACTGTTTCGAGAATCG-ATGCTTGTCATATTTAAGAGATGAATTT
* * * *
135551 TTATTTTAAGGAAAATAGTGAAAACAAAAG-TTTTCCATGCAAAA-AAAACCATCAATATCATTT
64 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-CATGCAAAAGAAAACCATCAATATCATTT
* *
135614 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAATAGAAT
128 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* *
135679 CCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAATTGGTTGAAAGAAAGCCTTTC
193 CCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTC
* * * *
135744 TTGCGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCC
258 TTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * *
135809 TAAAAAGAATGGGGATAATTATGACTATTCATGCTTCTCTTATTTGAGAGACAAACTTTGATTCT
323 TAAAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTAT
* *
135874 TTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCTAAAT
388 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT
135939 -ATTGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTTGAGAAACGATGCT
453 GA-TGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTG-TTTGAGAAACGATGCT
* * **
136003 TGTCATATTTAAGAAATGAATTTCGATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAA
516 TGTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAA
* * *
136068 AAGAAAACCATCAATATCTTTTATCCCAATGAGGAGAACATGGTTATAGTGCCTAATCACAAAAT
581 AAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAAT
* * * * * **
136133 GAATGAAAATCATTTCTGGAGTCCATGTTTGCCTCATTTGAGGCACGAATTTATTCTTTGCAATA
646 GAATGAAGATCATTTATAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATA
* *
136198 ATTGGTTGAAATAAAGCCTTTCTTGCGATGCCTAAACACCAATATATTGTATCCTTATGAGAAGA
711 ATTGGTTGAAAGAAAGCCTTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGA
* * * * * *
136263 CTATGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAGTATGGCTATTCATGTTTTTCTTAT
776 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGACTATTCAT-TTTCTCTTAT
* * *
136328 TTAAAAGATAAAACTTTGATTATATCAAAAACGGTGGAAAGG-AAAGTTTTTCTTGCGACACCAA
840 TTAAGAGACAAAACTTTGATTATATCAAAAACGGTGG-AAGGAAAAGCTTTTCTTGCGACACCAA
* * *
136392 AGCATCAATGTCATGTATC-AAATAATGGGTATGTGTCCTTGGTTCCT
904 AGCATCAATGTCATGTATCTAAATGATGGGTATGTGTTCTTGGTTCCC
*
136439 AATCTTGAAAAGACTGGAGACTGTTTC-AGGAATCGATGCTTGTCATATTTAAGAGATGAATTTT
1 AATCTTGAAAAGAATGGAGACTGTTTCGA-GAATCGATGCTTGTCATATTTAAGAGATGAATTTT
*
136503 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-AGTGCAAAAGAAAACCATTAATATCATTTA
65 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAACCATCAATATCATTTA
* * * *
136567 TCCTAATGAGAAGAATGTGCTCATAGTGCCTAATCAAAAAATGAATGAAGGTCATTACTAGAATC
129 TCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * *
136632 CATGTTGGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTAGTTGAAAGAAAGTCTTTCT
194 CATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCT
** *
136697 TGCGATGCCAAAACACCAATATATTGTGCCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCA
259 TGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * *
136762 AAAAAGAATGTGGATTAGTATGACTATTCATATTTCTCTTATTTAAGAGACAAAACTTTGATTAT
324 AAAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGAC-AAACTTTGATTAT
* * *
136827 ATCAAAAACGGTGGAAGGAAAAGCTTTGCTTGCGACACCAAAGCATCAATGTCATGTATATAAAT
388 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT
** * **
136892 GATGGAAATGTGTTCTTGGTTCCCAATCTTTAAAAGAATGGAGACTGTTTCGAGAATTGATGCTT
453 GATGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTT-GAGAAACGATGCTT
* * * * *
136957 -TCATATTTAAGAGATGAATTTTTATTCTAAGGAAAATAGGGAAAAGAAAAGTTTTTCATGCAAA
517 GTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAA
* * *
137021 AAAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
582 AGAAAACCATCAATATCATTTATCCTAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAATG
* * *
137086 AATGAAGATCATTAATAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAA
647 AATGAAGATCATTTATAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAA
* * *
137151 TTGGTTGAAAGAAAGCCTTTCTTGCGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGAC
712 TTGGTTGAAAGAAAGCCTTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGAC
* * *
137216 TATGTTTATGGTACCTAATCCTAAAAAGAATGGGGA-TAATTATGACTATTCATGCTTCTCTTAT
777 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTT-TGACTATTCAT-TTTCTCTTAT
* * * * *
137280 TTGAGAGAC-AAACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAA
840 TTAAGAGACAAAACTTTGATTATATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGACACCAAA
137344 GCATCAATGTCATGTATCTAAAT-ATTGGGTATGTGTTCTTGGTTCCC
905 GCATCAATGTCATGTATCTAAATGA-TGGGTATGTGTTCTTGGTTCCC
* * * *
137391 AATCTTGAAAAGAATGGAGACTGTTTTGAGAAACAATGCTTGTCATATTTAAGA-ATTGAATTTC
1 AATCTTGAAAAGAATGGAGACTGTTTCGAGAATCGATGCTTGTCATATTTAAGAGA-TGAATTTT
** * *
137455 GATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCTTTTAT
65 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTAT
* ** * * * *
137520 CCCAATGAGGAGAACATGGTTATAGTGCCTAATCACAAAATGAATGAAAATCATTTA-TGGAGTC
130 CCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCA-TTACTAGAATC
* ** *
137584 CATGTTTGCCTCATTTGAGGCACGAATTTATTCTTTGCAATAATTGGTTGAAATAAAGCCTTTCT
194 CATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCT
* *
137649 TGCGATGCCTAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCT
259 TGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * *
137714 AAAAAGAATGGGGATAATTATGACTATTCATGCTTCTCTTATTTGAGAGACAAACTTTGATTCTT
324 AAAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTATA
*
137779 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCTAAAT-
389 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATG
*
137843 ATTGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTTGAGAAACAATGCTT
454 A-TGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTG-TTTGAGAAACGATGCTT
* * **
137908 GTCATATTTAAGAAATGAATTTCGATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAA
517 GTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAA
* * *
137973 AGAAAACCATCAATATCTTTTATCCCAATGAGGAGAACATGGTTATAGTGCCTAATCACAAAATG
582 AGAAAACCATCAATATCATTTATCCTAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAATG
* * * * **
138038 AATGAAAATCATTTATGGAGTCCATGTTTGCCTCATTTGAGGCACGAATTTATTCTTTGCAATAA
647 AATGAAGATCATTTATAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAA
* *
138103 TTGGTTGAAATAAAGCCTTTCTTGCGATGCCTAAACACCAATATATTGTATCCTTATGAGAAGAC
712 TTGGTTGAAAGAAAGCCTTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGAC
* * * *
138168 TATGTTTATGGTGCCTAATCCAAAAAACAATGTGGATTAGTTTGACTATTCATATCTCTCTTATT
777 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGACTATTCAT-TTTCTCTTATT
* *
138233 TAAGAGACAAAACTTTGATTATATTAAAAACGGTGGAAGGAAAAGCTTTGCTTGCGACACCAAAG
841 TAAGAGACAAAACTTTGATTATATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAG
* **
138298 CATCAATGTCATGTATATAAATGATGGAAATGTGTTCTTGGTTCCC
906 CATCAATGTCATGTATCTAAATGATGGGTATGTGTTCTTGGTTCCC
* * * *
138344 AATCTTTAAAAGAATGGAGATTGTTTCGAGAATTGATGCTT-TCATATTTAAGAGATGAATTTTT
1 AATCTTGAAAAGAATGGAGACTGTTTCGAGAATCGATGCTTGTCATATTTAAGAGATGAATTTTG
*
138408 ATTTTAAGGAAAATAGGGAAAAGAAAAG-TTTTCCATGCAAAA-AAAACCATCAATATCATTTAT
66 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-CATGCAAAAGAAAACCATCAATATCATTTAT
* * * * *
138471 CCTAATGAGGAGAATGTGTTTATACTGCCTAATTACAAAATGAATGAATATCATTAATAGAATCC
130 CCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * *
138536 AAGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAATTGGTTGAAAGAAAGCTTTTCTT
195 ATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
* * * *
138601 GCGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTA
260 GCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA
** * * * *
138666 AAAAGAATGGGGATTATTATGACTATTCATGCATATCTTATTTAAAAGACAAGCTTTGATTATTT
325 AAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTATAT
* *
138731 AAAAAACGGTGGAAAG-AAAGCTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCTAAAT-A
390 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATGA
138794 TTGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTCTGAGAAACGATGCTTG
455 -TGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTT-TGAGAAACGATGCTTG
* **
138859 TCATATTTAAGAGATGAATTTCGATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAA
518 TCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAA
* * * *
138924 CAAAACCATCAATATCTTTTATCCCAATGAGGAGAATATGGTTATAGTGCCTAATCACAGAATGA
583 GAAAACCATCAATATCATTTATCCTAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAATGA
* * * * * **
138989 ATGAAAATCATTTCTGGAGTCCATGTTTGCCTCATTTGAGGCACGAATTTATTCTTTGCAATAAT
648 ATGAAGATCATTTATAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAAT
* *
139054 TGGTTGAAAGAAAGCCTTTCTTGCGATGCCTAAACACCAATATATTGTATCCTTATGAGATGACT
713 TGGTTGAAAGAAAGCCTTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACT
* * * *
139119 ATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTTTGGCTATTCATGTTTTTCTTATTT
778 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGACTATTCAT-TTTCTCTTATTT
* * *
139184 AAAAGATAAAACTTTGATTATATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
842 AAGAGACAAAACTTTGATTATATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAGC
* * * *
139249 GTCAATGTCATGTATC-AAATGATGTGTATGTGTCCTTGGTTCCT
907 ATCAATGTCATGTATCTAAATGATGGGTATGTGTTCTTGGTTCCC
* *
139293 AATCGTGAAAAGAATGGAGACTGTTT-TAGGAATCGATGCTTGTCATATTTAAGAGATGAATTTT
1 AATCTTGAAAAGAATGGAGACTGTTTCGA-GAATCGATGCTTGTCATATTTAAGAGATGAATTTT
*
139357 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-AGTGCAAAAGAAAACCATTAATATC-TTTA
65 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAACCATCAATATCATTTA
* * * * **
139420 TCCTAATGTGAAGAATGTGCTCATAGTGCCTAATCAAAAAATGAATGAAGGCCATTACTAGAATC
129 TCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * *
139485 CATGTTGGTCTCATTTGAGGTACGAATTTAGACTTTGCAATAATTGCTTGAAAGAAAGTCTTTCT
194 CATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCT
* ** * *
139550 TGCGATGCCATAACACCAATATATTGTGCCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCA
259 TGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * * *
139615 AAAAAAAATGTGGATTAGTATAACTATTCTTATTTCTCTTATTTAAGAGACAAAACTTTGATTAT
324 AAAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGAC-AAACTTTGATTAT
** * * *
139680 ATCAAAAACGGTGGATGGAAAAGCTTTCCTTGCGACACCAAAGCTTCAATGTCAAGTATCTAAAT
388 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT
** *
139745 GATGGAAATGTGTTCTTGGTTCCCAATCCTT-AAAAGAATGGAGACTGTTTCGAG-AATGCATGC
453 GATGGGTATGTGTTCTTGGTTCCCAAT-CTTGAAAAGAATGGAGACTGTTT-GAGAAACG-ATGC
* * * * *
139808 TT-TGATATTTAAGAGATGAATTTTTATTTTAAGGAAAAT-AGTGAAAAGGAAAG-TTTTCCGTG
515 TTGTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAAG-GCAAAGAAAAGATTTT-CATG
* *
139870 CAAAA-ACAACCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAA
578 CAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATATGGTTATAGTGCCTAATCACAA
* * *
139934 AATGAATGAAGATCATTAATAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACA
643 AATGAATGAAGATCATTTATAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCA
* * *
139999 ATAATTGGTTGAAAGAAAGCCTTTCTTGCGACGCCAAAACATCAATATAATGTATCCTTATGAGA
708 ATAATTGGTTGAAAGAAAGCCTTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGA
* *
140064 AGACTATGTTTATGGTACCTAATCCTAAAAAGAATGGGGATTA-TTATGACTATTCATGCTTCTC
773 AGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTT-TGACTATTCAT-TTTCTC
* * *
140128 TTATTTAAGAGAC-AAACTTTGATTATTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACAC
836 TTATTTAAGAGACAAAACTTTGATTATATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGACAC
*
140192 CAAAGCATCAATGTCATGTATCTAAAT-ATTGGGTACGTGTTCTTGGTTCCC
901 CAAAGCATCAATGTCATGTATCTAAATGA-TGGGTATGTGTTCTTGGTTCCC
** *
140243 AATCTTGAAAAGAATATACACTG-TTCTGAGAAAT-GATGCTTGTCATATTTAAGAGATGAATTT
1 AATCTTGAAAAGAATGGAGACTGTTTC-GAG-AATCGATGCTTGTCATATTTAAGAGATGAATTT
* ** * *
140306 CGATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCTTTTA
64 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTA
* * * * * * * *
140371 TCCCAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAATTAATGAAAATCATTTCTGGAGTC
129 TCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * **
140436 CATGTTTGCCTCATTTGAGGCACGAATTAATTCTTTGCAATAATTGGTTGAAAGAAAGCCTTTCT
194 CATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCT
* * *
140501 TGCGATGCCTAAACACCAATATATTGTATCCTTATGAGATGACTATGTTTATGGTGCCTAATCTT
259 TGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * *
140566 GAAAAGAATGGGGATTAGTT-TGGCTATTCATGTTTTTCTTATTTAAAAGATAAAACTTTGATTA
324 AAAAAGAATGGGGATTA-TTATGACTATTCATGTTTCTCTTATTTAAGAGA-CAAACTTTGATTA
* *
140630 TATGAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC-AAA
387 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAA
* * * * *
140694 TGATGTGTATGTGTCCTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTTTAGGAATCGATGCT
452 TGATGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTGA-GAAACGATGCT
*
140759 TGTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-AGTGCA
516 TGTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA-TGCA
* * * * *
140823 AAAGAAAACCATTAATATC-TTTATCCTAATGTGAAGAATGT-GTTCATAGTGCCTAATCAAAAA
580 AAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATATGGTT-ATAGTGCCTAATCACAAA
** * *
140886 ATGAATGAAGGCCA-TTACTAGAATCCATGTTGGTCTCATTTGAGGTACGAATTTAGACTTTGCA
644 ATGAATGAAGATCATTTA-TAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCA
** * * **
140950 ATAATTACTTGAAAGAAAGTCTTTCTTGCGATGCCATAACACCAATATATTGTGCCCTTATGAGA
708 ATAATTGGTTGAAAGAAAGCCTTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGA
* * * * * *
141015 AGACTATGTTTACGGTGCCTAATCCAAAAAAGAATGTGGATTAGTATAACTATTCTTATTTCTCT
773 AGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGACTATTCAT-TTTCTCT
* *
141080 TATTTAAGAGACAAAACTTTGATTATATCAAAAACGGTGGATGGAAAAGCTTTCCTTGCGACACC
837 TATTTAAGAGACAAAACTTTGATTATATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGACACC
* * **
141145 AAAGCTTCAATGTCAAGTATCTAAATGATGGAAATGTGTTCTTGGTTCCC
902 AAAGCATCAATGTCATGTATCTAAATGATGGGTATGTGTTCTTGGTTCCC
*
141195 AATCCTT-AAAAGAATGGAGACTGTTTCGAGAAT-GCATGCTT-TGATATTTAAGAGATGAATTT
1 AAT-CTTGAAAAGAATGGAGACTGTTTCGAGAATCG-ATGCTTGTCATATTTAAGAGATGAATTT
* * * * *
141257 TTATTTTAAGGAAAATAGTGAAAAGGAAAG-TTTTCCGTGCAAAA-AAAACCATCAATATCATTT
64 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-CATGCAAAAGAAAACCATCAATATCATTT
* * *
141320 ATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAATAGAAT
128 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * *
141385 CCATGTTTGTCTCATTTGAGGCATGAATTTATACTTTACAATAATTGGTTGAAAGAAAGCCTTTC
193 CCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTC
* * * *
141450 TTGCGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCC
258 TTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC
*
141515 TAAAAAGAATGGGGATTATTATGACTATTCATGCTTCTCTTATTTAAGAGACAAACTTTGATTAT
323 TAAAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTAT
* *
141580 TTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCTAAAT
388 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAAT
* * * *
141645 -ATTGGGTACGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATCCTGAGAAATGATGCT
453 GA-TGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGT-TTGAGAAACGATGCT
* **
141709 TGTCATATTTAAGAGATGAATTTTAATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAA
516 TGTCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAA
* * *
141774 AAGAAAACCATCAATATCTTTTATCCCAAAGAGGAGAATATGGTTATAGTGCCTAATCACAAAAT
581 AAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAAT
* * * * * * **
141839 GAATGAAAATCATTTCTGGAGTCCATGTTTGCCTCATTTGAGGCACGAATTAATTCTTTGCAATA
646 GAATGAAGATCATTTATAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATA
* *
141904 ATTGGTTGAAAGAAAGCCTTTCTTGCGATGCCTAAACACCAATATATTGTATCCTTATGAGATGA
711 ATTGGTTGAAAGAAAGCCTTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGA
* * * * *
141969 CTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGGCTATTCATGTTTTTCTTAT
776 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGACTATTCAT-TTTCTCTTAT
* * *
142034 TTAAAAGATAAAACTTTGATTATATCAAAAACGGTGGAAAGG-AAAGTTTTTCTTGCGACACCAA
840 TTAAGAGACAAAACTTTGATTATATCAAAAACGGTGG-AAGGAAAAGCTTTTCTTGCGACACCAA
* * *
142098 AGCATCAATGTCATGTATC-AAATAATGGGTATGTGTCCTTGGTTCCT
904 AGCATCAATGTCATGTATCTAAATGATGGGTATGTGTTCTTGGTTCCC
*
142145 AATCTTGAAAAGAATGGAGACTGTTTCAAGAATCGATGCTTGTCATATTTAAGAGATGAATTTTG
1 AATCTTGAAAAGAATGGAGACTGTTTCGAGAATCGATGCTTGTCATATTTAAGAGATGAATTTTG
*
142210 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-AGTGCAAAAGAAAACCATTAATATCATTTAT
66 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAACCATCAATATCATTTAT
* * * *
142274 CCTAATGAGAAGAATGTGCTCATAGTGCCTAATCAAAAAATGAATGAAGGTCATTACTAGAATCC
130 CCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * *
142339 GTGTTGGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTAGTTGAAAGAAAGTCTTTCTT
195 ATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
* ** *
142404 GCGATGCCATAACACCAATATATTGTGCCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAA
260 GCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* * * *
142469 AAAAGAATGTGGATTAGTATGACTATTAATATTTCTCTTATTTAAGAGACAAAACTTTGATTATA
325 AAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGAC-AAACTTTGATTATA
* * *
142534 TCAAAAACGGTGGAAGGAAAAGCTTTGCTTGCGACACCAAAGCATCAATGTCATGTATATAAATG
389 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATG
** * **
142599 ATGGAAATGTGTTCTTGGTTCCCAATCTTTAAAAGAATGGAGACTGTTTCGAGAATTGATGCTT-
454 ATGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTT-GAGAAACGATGCTTG
* * * * *
142663 TCATATTTAAGAGATGAATTTTTATTTGAAGGAAAATAGGGAAAAGAAAAGTTTTTCATGCAAAA
518 TCATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAA
* *
142728 -AAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
583 GAAAACCATCAATATCATTTATCCTAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAATGA
* * *
142792 ATGAAGATCATTAATAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAAT
648 ATGAAGATCATTTATAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAAT
* * * *
142857 TGGTTGAAAGAAAGCTTTTCTTGCGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGACT
713 TGGTTGAAAGAAAGCCTTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACT
* * **
142922 ATGTTTATGGTACCTAATCCTTAAAAGAATGGGGATTA-TTATGACTATTCATGCATCTCTTATT
778 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTT-TGACTATTCAT-TTTCTCTTATT
* * * * *
142986 TAAAAGAC-AAGCTTTGATTATTTAAAAAACGGTGGAAAG-AAAGCTTTTCTTGCGACACCAAAG
841 TAAGAGACAAAACTTTGATTATATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAG
*
143049 CATCAATTTCATGTATCTAAAT-ATTGGGTATGTGTTCTTGGTTCCC
906 CATCAATGTCATGTATCTAAATGA-TGGGTATGTGTTCTTGGTTCCC
* * * *
143095 AATCTTGAAAAGAATGAAGACTG-TTCTGAGAAACGATGCTTGTCATATTTAAGAAATGAATTTC
1 AATCTTGAAAAGAATGGAGACTGTTTC-GAGAATCGATGCTTGTCATATTTAAGAGATGAATTTT
** * *
143159 GATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCTTTTAT
65 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTAT
* * * * * * *
143224 CCCAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAATGAATGAAAATCATTTCTGGAGTCC
130 CCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* **
143289 ATGTTTGCCTCATTTGAGGCACGAATTTATTCTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
195 ATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTT
* * * *
143354 GCGATGCCTAAACACCAATATATTGTATCCTTATGAGATGACTTTGTTTATGGTTCCTAATCCTA
260 GCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* * * *
143419 AAAAGAATGGCGATTAGTATGACTATTCATG-------TA--AAAGATA-AAACTTTGATTATAT
325 AAAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTATAT
* * * * *
143474 CAAAAACGCTGGAAAGGAAAGTTTTTCTTGCGACACCAAAGCATCAATGTTATGTATC-AAATAA
390 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATGA
* * * *
143538 TGGGTATGTGTCCTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTTTAGGAATCGATGCTTGT
455 TGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTGA-GAAACGATGCTTGT
* * *
143603 CATTTTTAAGAGATGAATCTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-AGTGCAAAA
519 CATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA-TGCAAAA
* * * * * *
143667 GAAAACCATTAATATCATTTATCCTAATGAGAAGAATGTGCTCATAGTGCCTAATCAAAAAATGA
583 GAAAACCATCAATATCATTTATCCTAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAATGA
* *
143732 ATGAAGGTCA-TTACTAGAATCCATGTTGGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAA
648 ATGAAGATCATTTA-TAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAA
* * **
143796 TTAGTTGAAAGAAAGTCTTTCTTGCGATGCCAAAACACCAATATATTGTGCCCTTATGAGAAGAC
712 TTGGTTGAAAGAAAGCCTTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGAC
* * *
143861 TATGTTTATGGTGCCTAATCCAAAAAAGAATGTGGATTAGTATGACTATTCATATTTCTCTTATT
777 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGACTATTCAT-TTTCTCTTATT
*
143926 TAAGAGACAAAACTTTGATTATATCAAAAACGGTGGAAGGAAAAGCTTTGCTTGCGACACCAAAG
841 TAAGAGACAAAACTTTGATTATATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAG
* **
143991 CATCAATGTCATGTATATAAATGATGGAAATGTGTTCTTGGTTCCC
906 CATCAATGTCATGTATCTAAATGATGGGTATGTGTTCTTGGTTCCC
* * *
144037 AATCTTTAAAAGAATGGAGACTGTTTCGAGAATTGATGCTT-TCATATTTAAGAGATGAATTTTT
1 AATCTTGAAAAGAATGGAGACTGTTTCGAGAATCGATGCTTGTCATATTTAAGAGATGAATTTTG
* *
144101 ATTTTAAGGAAAATAGGGAAAAGAAAAGTTTTTCATGCAAAA-AAAACCATCAATATCATTTATC
66 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
* *
144165 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAATAGAATCCA
131 CTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * *
144230 TGTTTGTCTCATTTGAGGCATGAATTTAGACTTTACAATAATTGGTTGAAAGAAAGCTTTTCTTG
196 TGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
* * * * * *
144295 TGACGCCAAAACATCAATATAATGTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTTA
261 CGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
** * * * *
144360 AAAGAATGGGGATTATTATGACTATTCATGCATCTCTTATTTAAAAGACAAGCTTTGATTATTTA
326 AAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTATATC
*
144425 AAAAACGGTGGAAAG-AAAGCTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCTAAAT-AT
391 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATGA-
*
144488 TGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGAAGACTGTTCTGAGAAACGATGCTTGT
455 TGGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTT-TGAGAAACGATGCTTGT
* * **
144553 CATATTTAAGAAATGAATTTCGATTTTAACAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAG
519 CATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAG
* *
144618 AAAACCATCAATATCTTTTATCCCAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAATGAA
584 AAAACCATCAATATCATTTATCCTAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAATGAA
* * * * * * **
144683 TGAAAATCATTTCTGGAGTCCATGTTTGCCTCATTTGTGGCACGAATTTATTCTTTGCAATAATT
649 TGAAGATCATTTATAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATT
*
144748 GGTTGAAAGAAAGCCTTTCTTGCGATGCCTAAACACCAATATATTGTATCCT
714 GGTTGAAAGAAAGCCTTTCTTGCGATGCCAAAACACCAATATATTGTATCCT
144800 AATAAAAGGT
Statistics
Matches: 9050, Mismatches: 1070, Indels: 288
0.87 0.10 0.03
Matches are distributed among these distances:
937 1 0.00
938 60 0.01
939 125 0.01
940 455 0.05
941 90 0.01
942 96 0.01
943 6 0.00
947 2 0.00
948 2 0.00
949 372 0.04
950 2840 0.31
951 2645 0.29
952 1855 0.20
953 491 0.05
954 10 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (951 bp):
AATCTTGAAAAGAATGGAGACTGTTTCGAGAATCGATGCTTGTCATATTTAAGAGATGAATTTTG
ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
CTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
TGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGGTTGAAAGAAAGCCTTTCTTG
CGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
AAAGAATGGGGATTATTATGACTATTCATGTTTCTCTTATTTAAGAGACAAACTTTGATTATATC
AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTAAATGAT
GGGTATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTGAGAAACGATGCTTGTCA
TATTTAAGAGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAA
AACCATCAATATCATTTATCCTAATGAGGAGAATATGGTTATAGTGCCTAATCACAAAATGAATG
AAGATCATTTATAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTGCAATAATTGG
TTGAAAGAAAGCCTTTCTTGCGATGCCAAAACACCAATATATTGTATCCTTATGAGAAGACTATG
TTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGACTATTCATTTTCTCTTATTTAAGA
GACAAAACTTTGATTATATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAGCATCA
ATGTCATGTATCTAAATGATGGGTATGTGTTCTTGGTTCCC
Found at i:147391 original size:475 final size:476
Alignment explanation
Indices: 145517--157483 Score: 12935
Period size: 475 Copynumber: 25.2 Consensus size: 476
145507 ACATGATTTT
* * * * * * * *
145517 TTTTTTTTTGCATAGAAACCTCTTCTTCGCCCCATTTTCCTTAAAATAAAAATTCATCCTTTAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * * *
145582 TATGACAAGCATTGTTTCTCGTAACGGTCTCCATTCTTTTCACGATTGGGAACTAAGAACACATT
66 TATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACACATT
* * * *
145647 CCCTTCATTAGGATACATGACATTGATGATTTGGTGTCGCTAGAAAAGCTTTTATTTCCACCATT
131 CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATT
* *** * * * * *
145712 TTTAATAGAATCAAAGTTTGTCTAAAAAATAAGACAAACATTAATACTCATACAAATCTCCACTC
196 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC
* ** * *
145777 TTTTCAGGATTAGGCACCATGAACATAGTCTTCTCATTAA-GATTGATGATATTGATGCATTGGT
261 TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATATTGATGCTTTGGT
* * * * * *
145841 TT-GCTAGGAATGGCTTTCTT-CTACCAATTTTTGTAAAGTATAAGTTCGTGCTTCAAATGAGAT
325 TTCGC-AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
*
145904 AAACATGGATTCTAGTAA-GTATCCTT-ATTCATTTTGTGATTAGGCACTACAAACACATTCTCC
389 AAACATGGATTCTAGTAATG-AT-CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
* *
145967 TTAATAGGATAAATGATATTGATGA
452 TCATTAGGATAAATGATATTGATGA
* * * *
145992 TTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATTAAAATTCATCCCCTAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * * * * *
146057 TATGACAAGCATCGTTTCTCATAAAAGTCTCCATTCCTTTCAGGATT-GGAACCAAGAACACACT
66 TATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACACATT
* * * * * * * ***
146121 CCTTTCCTTAGGATACAAGATATTAATGCTTTGGAGTCGCAAGAAAAGCTTTTCTTTCC-TTTTC
131 CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCAT-
* * *
146185 TTTTGATATAATCAAAGTTTGTCTCGTAAAAAAGACAAACATGAATAGTCATACTAATCCCCATT
195 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT
* * * * * *
146250 -TTTTTAGGATTAGGCACCCTAAACATAGTCTCCTTATAAAGATACACGATATTGACGCTTTGGT
260 CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGT
** * * * *
146314 TTCATAAGAAAAGCTTTCTTCACACCAATTTTTGTAAAGTGC-AAGTTCATGCCTTAAATGAGAC
325 TTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT-CTAAGTTCGTGCCTCAAATGAGAC
* * * *
146378 AAACATGGATTCTAGTAAGGA---TC-TTCATTTTGTGATTAGGAACTATAGACACATTCTCCAC
389 AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC
* **
146439 AATAGGATAAATGATATAAATGA
454 ATTAGGATAAATGATATTGATGA
* * *
146462 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATTAAAATTCATCCCTTAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * *
146527 TATGACAAGCATC-ATTTCCCGTAACAGTCTCTC-TTTTTTTGACA-ATT-GGAACCAAGAACAC
66 TATGACAAGCATCGA-TTCTCGTAACAGTCTC-CATTCTTTTCA-AGATTGGGAACAAAGAACAC
* * * * *
146588 ATTCCCTTCCTTAGGATTCATGACATTGATGCTATGGTGTCACAAG-AAAGCTTTTCTTTCCACC
128 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACC
* * ** * * *
146652 ATTTGTGACAGAATCAAAGATTT-TCTCCGAAATAAAACAAACATGATTACTCATACTAATCCCC
193 ATTTTTGATAGAATCAAAG-TTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCC
* *
146716 ATTCTTTTCAGGATTAGGCACCATAAA-ATAGTCTTCTCATTAGGATGA-AAGATATTGATGCTT
257 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT-ACACGATATTGATGCTT
* * * * * *
146779 TGGTTTTGCAAGAAAGGCTTTCTTCCTACCAATTTTTGTAACGTCTAAGTTCATACCTCGAATGA
321 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
* * * * * * * * * *
146844 GACAAATATTGATTCTAGTAAGGATCCTCTTTTAATTTCTGATTAGACACTACAAACACATTCTC
386 GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* *
146909 CTCAATAGGATAAATGATATTGATAA
451 CTCATTAGGATAAATGATATTGATGA
* ** * * *
146935 TTATCTTTTGTGTGGAAATCTTTTTTTTGCCCTGTTTTTCTTAAAATCAAAATTCATCCCTTAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * * * *
147000 TACGACATGCAT-TATTTCTCATAACAGTCTCCATTCTTTTCACGATTGGGAACAAATAACACAT
66 TATGACAAGCATCGA-TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACACAT
* * * * **** * * **
147064 TCTCGTCATTAAGATACATGATATTGATGCTCCAATGTTGCAAGAAAAGGATTT-TTTCCACTGT
130 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCAT
* * * * *
147128 TTGTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATAGTCATATTACTCCCAATT
195 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT
* ** * * *
147193 CTTTACAGGATTAGGCACCATAAATGTAGTCTTCTAATAAAGATACACAATATTGATGCTTTGGT
260 CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGT
* * * * *
147258 TTCGCAAGAAGGGCTTTTTTCCCACCAATTTTGGTAAAGTCTAAGCTT-ATGCCTTAAATGAGAC
325 TTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG-TTCGTGCCTCAAATGAGAC
* * * * * * *
147322 AAACATGGATTATAGTAAGGATCTTCATTCATTTTGTGATTAGGCAATACAGACACATTTTCTTC
389 AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC
* * *
147387 AATAGGATAAATGATGTTGATAA
454 ATTAGGATAAATGATATTGATGA
* * * * *
147410 TTTTCTTTTGCGTGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTCATCCTTTCAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * * * * *
147475 TAAGACAAGTATCGATTCTCGTAATACTCTCTATTCTTTTTAAGATTGGGAACCAAA-AATACAT
66 TATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CAAAGAACACAT
* * ** * *
147539 TCCCTTCATTAGGATACATGACATTGATGCTATGGAGTCATAGGAAAAGGTTTTATTTCCACCAT
130 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCAT
* * * * *
147604 TTTTTATAGAATCAAAGTTTGTCTTTTAAATAAGTCAAACATGAATAGTCATACCAATCCCTATT
195 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT
* ** * *
147669 CTCTTCTAGG-TTAGGCACCATAAACATAGTCTTCTTGTTAGGATAGACGATATTGATGCTTTGG
260 CTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG
* * * * *
147733 TTTTGCAAGAAAAGCTTTCTTCCCACTAATTTTTGTAAAGTCTAGGTTCGTGCCTCAAACGAGAC
324 TTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
* * * * *
147798 AAACATGGATTCCAGTAATGATCTTCCTTCATTTTATGATTAGGTACTATAAACACATTTTCCTC
389 AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC
*
147863 ATTAGGATAAATGATATTGATGG
454 ATTAGGATAAATGATATTGATGA
* * * * *
147886 TTTTCTTTTGCCT-AAAATATTTTCTTTGCCCTATTTT-CTACAAAATCAAAATTCATCTCTTAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT-TAAAATCAAAATTCATCCCTTAA
* ** * * * * * * * * *
147949 ATAAGGTAATCA-CTGATTCCCGTAGCAGTCTCCATTCATTCCAAGACTAGGAGCCAAA-AAGAC
65 ATATGACAAGCATC-GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA-ACAAAGAACAC
* * * * * *
148012 ATTCCTTTGATTAGGATACATGATATTGACGCTTTGGTGTCGCAGGAAAAGGTTTTCTTTCAACC
128 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACC
* * * ** * *
148077 ATTTTTGATAGAATTAAAATTTGTC-CCTAAATAAGTTAAACATGAATAGTTATGCTAATCCCCA
193 ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA
* * * * * *
148141 TTCTTTTCAGGATTAGCCACCATAATCATAGTTTTCTTATAAGGATACACGATATTGACGCTTTA
258 TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTG
** * * * *
148206 GTTTTACAAGAAAGGCTTTCTTCCCACCAAATTTTATAAAGTCTAAGTTCATACCTCAAATGAGA
323 GTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA
* * *
148271 TAAACATGGATTCTAGTAATGATATTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCCT
388 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT
148336 CATTAGGATAAATGATATTGATGA
453 CATTAGGATAAATGATATTGATGA
* * * * * *
148360 -TTTGTTTTCCATAGAAATCTTTTTTTTGCCTTATTTTCCTTAAAATC-AAATTCATCTCTTAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * * * * * **
148423 TAAGGCAAGCATTGATTCCCGTAACAGTCTCCATTCTTTTCTAGATTGGGAACCAAGAATACACC
66 TATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACACATT
* * * * * **
148488 CCCTTCCTTAGGATACATGACATTAATGCTTTGGTGTTCGCAAGAAAAGCTTTTATTTCCTCTGT
131 CCCTTCATTAGGATACATGACATTGATGCTTTGGTG-TCGCAAGAAAAGGTTTTCTTTCCACCAT
*
148553 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGCCAAACATGAATAGTCATACTAATCCCCATT
195 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT
* * *
148618 CTTTTCAGGATTCA-GCACCATAAACATAGTCTTCTCATAAGGATATACAATATTGATGCTGTGG
260 CTTTTCAGGATT-AGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG
* * * * *
148682 TTTTGCAAGAAAAGCTTTCTTCCCCCCAAATTTTGTAAAGTCTAAGTT-GATGCCTCAAATAAGA
324 TTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCG-TGCCTCAAATGAGA
* * * * *
148746 CGAACAAGGATTCTAGTAATGATTTTTA-TCTATTTTGTGTTTAGGCACTATAAACACATTCTCC
388 CAAACATGGATTCTAGTAATGATCTTCATTC-ATTTTGTGATTAGGCACTATAAACACATTCTCC
*
148810 TCATTAGGATAAATGACATTGATGA
452 TCATTAGGATAAATGATATTGATGA
* * * * *
148835 TTTTTTTTTGCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCATAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * * *
148900 TAAGACAAGCATTGATTCTCGTAACTA-TCTGCA--C---TC----TT---AACCAATAACACAT
66 TATGACAAGCATCGATTCTCGTAAC-AGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACACAT
*
148952 TCCAC-TCATTAGGATATATGACATTGATGCTTTAGG-GTCGCAAGAAAAGGTTTTCTTTCCACC
130 TCC-CTTCATTAGGATACATGACATTGATGCTTT-GGTGTCGCAAGAAAAGGTTTTCTTTCCACC
* * * *
149015 ATTTTTCATAGAATCAAAGTTTGTGTCTTAAATAAGAGAAACATGACTAGTCATACTAATCCCCA
193 ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA
* * *
149080 TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATCGATGCTTTA
258 TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTG
* * * * * * *
149145 GTTTTGCATGAAAGGCTTTCTTCCCACCAAATTTTGTAAAGGCTAAGTTCATGCCTCAATTGAAA
323 GTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA
* * *
149210 CAAACATGAATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTACAAGCACATTCTCCT
388 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT
* * *
149275 TATTAGAATAAATGATATTCATGA
453 CATTAGGATAAATGATATTGATGA
* * *
149299 TTTTTTTCTTTGCATGGAAATCTTTT-TTTCGCCTTATTTTCCTTAAAATCAAAATTCATGCCTT
1 -TTTTCT-TTTGCATGGAAATCTTTTCTTT-GCCCTATTTTCCTTAAAATCAAAATTCATCCCTT
* * * *
149363 AAATATGACAAGCATTGATTCTCGTAACAG-CATCCATTCTTTTCAAGATTAGGAACTAAGAATA
63 AAATATGACAAGCATCGATTCTCGTAACAGTC-TCCATTCTTTTCAAGATTGGGAACAAAGAACA
* * * * *
149427 CATACCCTTAATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAATGGTTTTCTTTTCAC
127 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCAC
* ** * * *
149492 CAGTTTTGATAGAATCAAAGTTTAACACTTAAATAAGTA-AAACATGAATAGTCAAAATAATCCC
192 CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG-ACAAACATGAATAGTCATACTAATCCC
* * *
149556 AATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACGATTATT-ATGCT
256 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA-TATTGATGCT
* * * * * * * *
149620 TT-ATTGTTGCAAGAAAGGCTTT-TTCCCAACTAACTTTTGTAAATTTTAAGTTCATGCCTTAAA
320 TTGGTT-TCGCAAGAAAGGCTTTCTTCCC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * * * * **
149683 TGAGACAAACATGGATTTTAGTAGTCATCCTCATTCATTTTGTGATTAGGCA--AAAAAGCATTT
383 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA-CACAT
* *
149746 TCTCCTTAATAGGATAAATGATATTGAT-A
447 TCTCCTCATTAGGATAAATGATATTGATGA
* ** * * * *
149775 GTTTTCTTTTGCCTTAAAATCTTTTTTTTGCCCTATTTTCGTTAAAAACAAAATTCATCGCTTAA
1 -TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAA
* * * ** **
149840 AT-TAGGCAAGTATTGATTCTCGTAGTAGTCTCCATTCTTTAAAAGATTGGGAACCAAA-AACAC
65 ATAT-GACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CAAAGAACAC
* * * * * *
149903 AATGCCTTAAATAGGATATATGACATTGATGCATTGGTGTCGCAAGAAAAGGTTTTCTTTCCACC
128 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACC
* * * * *
149968 GTTTTTCATAGAATCAAAGTTTATCTTTTAAATAAGTCAAACATGAATAGTCATACTAATCCCCA
193 ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA
* * * * *
150033 TTCTTTTCCA-GATTAGGCACTATAAACATAATCTTCTCATTAGGTTAGACGATATTGATGCTTT
258 TTCTTTT-CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
** * * **
150097 GGTTTCATAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGGCTAAGTTCGTGCCTCAAACAAG
322 GGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
* * * *
150162 ACAAACATGGATTTTAGTAATGATCTTTATTTATTTTGTGATTAGGTACTATAAACACATTCTCC
387 ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
* *
150227 TCATTACGATAAATGATATTGATGG
452 TCATTAGGATAAATGATATTGATGA
* ** * * ** * *
150252 TTTTCTTTTGCCTTAAAATCTTTTCTTTGCCTTATTTTTCGCAAAATCAAAATTCAGCTCTTAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* ** * * * * *
150317 TAAGGTAAGCATTGATTCCCGTAATAGTCTCCATTC-TTTCAAGATTAGGAACGAAGAACACATT
66 TATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACACATT
* * * * *
150381 TCCTTGATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCTACAATT
131 CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATT
** * * * * * *
150446 TTTGATTTAATCAAAGTTTATCACTAAAATAAGACAAACATGAATATTCAAACTAATCCCCATTG
196 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC
* * * * *
150511 TTTTCAAGATTAGGCACCATAAACATAGTATTCTCATAAGGACACATGATATTAATGCTTTGGTT
261 TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTT
** * * * *
150576 TTACAAGAAAGGCTTTCTTCCAATCAATTTTTGTATAGTCTAAGTTCGTGCTTCAAATGAGACAA
326 TCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA
* * *
150641 ACATGGATTCTAATATTGATCTTCATTCATTTTGTGATTAGGCACTATGAACACATTCTCCTCAT
391 ACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAT
150706 TAGGATAAATGATATTGATGA
456 TAGGATAAATGATATTGATGA
150727 TATTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAA
1 T-TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAA
* * * *
150791 ATATGACAAGCATCGATTTTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAAGACAC
65 ATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACACA-
* * * * * * * ** * *
150856 TT-CCTTGATTAGGATATATAACATTGATGCTTTGGTGTTGTAAAAAAATGTTTTCTTTGTATCG
129 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCA
* * *
150920 TTTTTGATAGAATCAAAGTTTGTCTCTAAAATATA-ATAAACATGAA-AGGTCATAATAATCCCC
194 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-AGACAAACATGAATA-GTCATACTAATCCCC
* * * * ** *
150983 ATTGTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGACACACAATATTGACACTCT
257 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
* * * * *
151048 GGTTTTGCAAGAAAGGCTTTCTTCCAACCAATTTTTGTATAGTCTAAGTTGGTGCTTCAAATGAG
322 GGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
* * * * * *
151113 GCAAACATTGATTATAGTATTGATCTTCATTCATTTTGTGATTAAGCACTATGAACACATTCTCC
387 ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
151178 TCATTAGGATAAATGATATTGATGA
452 TCATTAGGATAAATGATATTGATGA
* * * *
151203 TTTTTTTTTTGCATGGAAATCTTTTTTTTGCCCTATTTTCCTTAAAATCAAAATTGATCCATTAA
1 -TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAA
* * * * *
151268 ATACGAAAAGCATCGATT-TGCATAAAAGCCTCCATTCTTTTCAAGATTGGGAACCAAA-AACAC
65 ATATGACAAGCATCGATTCT-CGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CAAAGAACAC
* * * * * *
151331 ATTCACTTGATTGGGATACATGACATTGATGCTTTGATGTCGCAGGAAAAGGTTTTCTTTCAACC
128 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACC
* * * * *
151396 ATTTTTTATAGAATCAAAGTTTGTCT-TGAAATAAGTCGAACATGAATAGTCATACTAATCCTCA
193 ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA
* * * * *
151460 TTCTCTTCAGGATTAGGCATCTTAAACATAGTCTTCTCATTAGGAT-CGACGATATTCATGCTTT
258 TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC-ACGATATTGATGCTTT
* * *** * *
151524 GGTTTTGTAAGAAAGGCTTTC-TCCTGTTCAATTTTTGTAAAGTCCAAGTTCGTGCCTTAAATGA
322 GGTTTCGCAAGAAAGGCTTTCTTCC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
* * * *
151588 GACAAACATGGATTCTAGTAATCATCTTCGTTCATTTTGTGATTAGGCATTATAAACATA-TCTC
386 GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* * *
151652 CTCATTAGTATAAATGACACTGATGA
451 CTCATTAGGATAAATGATATTGATGA
* * ** * *
151678 TTTCCTTTTGCTTGGAAATCTTTTCTTTGCCAAATTTTTTCATAAAATCAAAATTCATCTCC-TA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTTCCTTAAAATCAAAATTCATC-CCTTA
* * * * * * *
151742 AATTTGGCAAGCATTGATCCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAATACT
64 AATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACACA
* * * * **
151807 TTCCTTTCATTAGGATACATGACATTGAAGCTTTGGTGTCACAAGAAAAGCTTTTCTTTTAACCA
129 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCA
* * * * * *
151872 TTTCTGATAGAATCAATGTTTTTCTCTTAAATATGACAAACATGAATACTCATACTAATCCCTAT
194 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * * *
151937 TCTTTTCAGGATTCGACACCATAAACATAGTCTTCGT-ATAAGAATACACGATATTGATGCTTTA
259 TCTTTTCAGGATTAGGCACCATAAACATAGTCTTC-TCATAAGGATACACGATATTGATGCTTTG
** * * * *
152001 GTTTCATAAGAAATGATTT-TTCCCCCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGA
323 GTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA
* * * * * *
152065 CAAACATGGATTCTAATAATAATATTTATTCATTTAG-GATTAGGCACTATAAACAGATTCTCCT
388 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT
152129 CATTAGGATAAATGATATTGATGA
453 CATTAGGATAAATGATATTGATGA
* * *
152153 TTTTCTTTTGCATGGAAAACTTTTCTTTGCCCTATTTTTCTTAAAATCAAAATTCATCCCTTAGA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
** * * * * *
152218 TAAAACAAGCATCGATTCTCATAGCAGTTTCAATTCTTTCCAAGATTGGGAAGCAAA-AACACAT
66 TATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CAAAGAACACAT
* * *
152282 TCCCTTCATTCA-GATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTCTATCCCCCA
130 TCCCTTCATT-AGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCA
* * **
152346 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-AGATAATCACACTAATCCTTA
194 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA-ATAGTCATACTAATCCCCA
* * * *
152410 TTCTTTTCAAGATTAGGCACCATAAACATGGTCTTCTTATAATGATACACGATATTGATGCTTTG
258 TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTG
* * * * *
152475 GTGTT-GTAAGAAAGGCTTTCTTGCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAGATGAG
323 GT-TTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
** * * * *
152539 ACAAACATGGATTCTAGTGTTGATCTTCATTCATTTTGGGATTAAGCACAATAAAGACATTCTCC
387 ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
** *
152604 TTGTTAGGATAAATGATAGTGATGA
452 TCATTAGGATAAATGATATTGATGA
* * * * *
152629 CTTTCTTTTGCATGGAAATCTTTTTTTTACCCTACTTTCCTTAAAATAAAAATTCATCCCTTAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * ** * * * * *
152694 TATTATACTCATCGATTCTCGTAACAGTCTCTATTTTTTTCAAGATTAGAAACCAAA-AACATAT
66 TATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CAAAGAACACAT
* * * * *
152758 TCCCTTCA--AGAATACATGACATTGAAGCTTTGGTGTTAG-AA-AAGAAGCTTTTCTTTCAACC
130 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTG-TCGCAAGAA-AAGGTTTTCTTTCCACC
* ** * * * *
152819 GTCCTTAATAGAATCAAAGTTTCTCCCTTAAATAAGACAAACATGAATA-CCAATACTAATCCCC
193 ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC-ATACTAATCCCC
* * * * * * *
152883 ATTCTTTTCTGGATTTGGAACCATTAACATAGTCTTCTCATAAGGGTGCACGATGTTGATGCTTT
257 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
* * * * * *
152948 GGTTTTGCAGGAAAGGCTTTCTT-CCACTAATTTTTGTAAGGTCTAAGTTCGTGCATTAAATGAG
322 GGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
* * * * * *
153012 ACAAACACGGATTCTAGGAATGATATTTATTGATTTTGTGATTAGGCACTATAAACACATTCTAC
387 ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
* * *
153077 TCCTTAGAATAAACGATATTGATGA
452 TCATTAGGATAAATGATATTGATGA
* **
153102 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCAAAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * * *
153167 TATTATAAGAATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAATACATT
66 TATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACACATT
* * * * * *
153232 CCTTTTATTAGGATACATGGCATTGATGCTTTCGTGTCGTAA-AGAAACGTTTTCTTTCCACCAT
131 CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA-AAAGGTTTTCTTTCCACCAT
* *
153296 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATATTAATCCCCATT
195 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT
* * * * * * * * * * *
153361 CTTTTCAGCCA-AAGGCACCATAAACATAGTATTGTCTTTAA-TATAGATGATACTAAAGCTTTG
260 CTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTC-ATAAGGATACACGATATTGATGCTTTG
* * * ** * * *
153424 GTTTCGCAAGAAAGGCTTTTTTCCC-CCAATTTTTGTCAAGTGTAAGTTTATACCACAAATGAAA
323 GTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA
* * * * *
153488 CAAACATGGATTCTAGTAAGGAT-TTCATTCAATCTGTGATTAGGCACTATAAAAATATTCTCCT
388 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT
*
153552 TATTAGGATAAATGATATTGATGA
453 CATTAGGATAAATGATATTGATGA
* * *
153576 TTTTCTTTTGCATGGAAATCTTTTCTTTCCCCTATTTTCCATAATATCAAAATTCATCCCTTAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * *
153641 TAAGACAAGCATCGATTCTCATAACAGTTTCCATTCCTTTT-AAGATTGGGAAGCAAA-AGCACA
66 TATGACAAGCATCGATTCTCGTAACAGTCTCCATT-CTTTTCAAGATTGGGAA-CAAAGAACACA
* * ** * * * *
153704 ATCCCTTCATTACGATACCCGATATTGATGCTTTGGTGTCGTAAG-AAAGCTTTTCTTT-CAACA
129 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCA
* * * *
153767 GTTTTGGATAGAATCAAAGTTTGTGC-CTTAAATAAGACAAACATCAACACTCATACTAATCCCC
194 -TTTTTGATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCC
* * *
153831 ATTCTTTTCTA-GATTAGGCACCAT-AACATATTCTTCTCATAAGGATACACGATGTTGATGGTT
257 ATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTT
* * * * *
153894 TGGTTTCGCAGGAAAAGCTTTCTTCCCACCAATTTGTGTAAAGTCTAAGTTCATGCCTCAAATAA
321 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
* * * * * *
153959 GACCAACGTGGATTCTAATACTGATTTTCATTCATTTTGTGATTAGCCACTATAAACACATTCTC
386 GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* * * *
154024 CTCCTTAGAATAAATCATATTGATGG
451 CTCATTAGGATAAATGATATTGATGA
154050 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCA-CCCTTAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * * * * *
154114 TATGGCAAGAATCTATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAACCAAGAATACATT
66 TATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACACATT
* * * * * * * *
154179 CCCTTTATTAGGATACATGGCATTGATGCTTTCGTGCCGCAAGGAAAGGTTTTCCTTCTACAATA
131 CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCAT-
* **
154244 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAATGTGAATAGTCATACTAAT-CCCATT
195 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT
* * * ** * * * *** *
154308 CTTCTCAGCATGAGGTGCCATAAACATAGTCTTGTCTTTAGGATAGGTGATATTGATGCATTGGT
260 CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGT
* * * * * * * *
154373 TTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTGTAAGTTTGTACCACATATAAGACA
325 TTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * * * * * * *
154438 ACCATGGATTCTTGTAAGGAT-TTCATTGATTCTATCATTAGGCACTATAAACATATTCTCCTCA
390 AACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA
*
154502 TTAGGATAAAAGATATTGATGA
455 TTAGGATAAATGATATTGATGA
* *
154524 TTTTCTTTTGCATGGAACTCTTTTCTTTGCCCTATTTTCCATAAAATCAAAATTCATCCCTTAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
** * * * * * *
154589 TAAAACAAGCATCGATTCTCGTAACAGTTTGCATTCCTTTCAAGATTAGGAAGCAAA-AGCACAA
66 TATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CAAAGAACACAT
* * * * * ** *
154653 TCCCTTCGTTACGATACCTGACATTGAAGCTTTGGTGTCACAAG-AAACCTTTTCTTTCAACCAT
130 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCAT
* * * *
154717 TTTTGATAGAATCAAAGTTCGTGTCTTAAATAAGACAAACATTAATACTCATACTAATCCCCATT
195 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT
* * * * * * * *
154782 CTTTTCTGGATTAGGCACCATAAACCTTGTCTTCTTATAAGGATACATGATGTTGATGTTTTGTT
260 CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGT
** ** * * * *
154847 TTCAAAAGAACTGCTTTCTTCCCACCAATTTTTGTAATGTCTAAGTTTGTGCCTTAAATAAGACA
325 TTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * * *
154912 AACATTGATTCTAATAATGATCTTCATTCATTTTGTGACTAGCCACTATAAACACATTCTCCTCA
390 AACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA
* *
154977 TTAGGATGAATGATATTGCTGA
455 TTAGGATAAATGATATTGATGA
* *
154999 TTTTCTGTTGCATGGAAATCTTTTCTTTGCCATATTTTCCTTAAAATCAAAATTCATCCCTTAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
** ** * * *
155064 TATGACAAGCATCGATTCTCG-ATACAACCTCCATTCTCATCAAGATTGGGAACCAAGAATACTT
66 TATGACAAGCATCGATTCTCGTA-ACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACACAT
* * * *
155128 TCCCATCATTAGGATACATGACATTGATGCTTTGG-GACCACAAGAAAAGCTTTTC-TTCCAACC
130 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTG-TCGCAAGAAAAGGTTTTCTTTCC-ACC
* * * * * * *
155191 GTTTTTTTATTGAATCAAAGTTTGTCTCTTAAATATGACAAACATTAATACTCATACTAATCCCA
193 -ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCC
* * * * * * *** * * *
155256 ATTCTTTACAGCATGAGGCACCATAAACATAGTCTTGTCTTTAGGATAGGTGAAACTGAAGCTTT
257 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
* ** * * * *
155321 GGTTTCGCAAGAAAGGCTTT-TTCCC-CTAATTTTTGTAAAGTGGAAGTTCATACCACAAATGAA
322 GGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
* * * *
155384 ACAAACATGGATTCTAGT-ATGGAT-TTCATTCATTCTATGATTAGGCACTATAAAAATATTCTC
387 ACAAACATGGATTCTAGTAAT-GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
*
155447 CTCATTAGGAAAAATGATATTGATGA
451 CTCATTAGGATAAATGATATTGATGA
* * * *
155473 TTTT-TTTTACATGGAAATCTTTTCTTT-CCCTTATTTTCCATAAAATCAAAATTCATCTCTCAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCC-TATTTTCCTTAAAATCAAAATTCATCCCTTAA
* * * * * * *
155536 ATAAGACAAGCATC-ACTTCTCGTAACTGTTTCCATTCCTTTCAGGATAGGGAAGCAAA-AGCAC
65 ATATGACAAGCATCGA-TTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CAAAGAACAC
* * * * *
155599 AATCCCTTCATTACGATACCTGACATTGATGCTTTGGTGTCGCAAG-AAAGCTTTTCTTTCAACC
128 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACC
* * * * * *
155663 GTTTTGGATAGAATCAAAGTTTGTGTCTTAAATATGACAAACATCAATACTCATACTAATCCCCA
193 ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA
* * * * *
155728 TTCTTTTCTA-CATTAGGCACGATAAACATATTCTTCTCATAAGGATACACGATGTTGATGGTTT
258 TTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT
* * * *
155792 GGTTTCGCAAGAAAAGCTTTATTCCCACTAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAT-AG
322 GGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
* * * *
155856 ACAAACATGGATTCTAATAATGATTTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCT
387 ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
* *
155921 TCCA-TAGAATAAATGATATTGATGG
452 T-CATTAGGATAAATGATATTGATGA
*
155946 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA-TTTCCTTAAAATCAAAATTCATCCCTTAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * * * *
156010 TATGACAAACATCTATTCTCGTAACAATCTCCATTCATTTT-AAGTTTGGGAACCAAGAATACAT
66 TATGACAAGCATCGATTCTCGTAACAGTCTCCATTC-TTTTCAAGATTGGGAACAAAGAACACAT
* * * * * * **
156074 TCCCTTTATTAGGATACATGGCATGGATGCTTTCGTGTCGCAA-AGAAAGGTTTTCCTTCTACTG
130 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA-AAAGGTTTTCTTTCCACCA
* * *
156138 TTTTTGATTGAATCAAAGTTTGTCTCTTAAGTAAGACAAACGTGAATAGTCATACTAATCCCCAT
194 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * * * * * * * ***
156203 TCTTCTCAGCATGAGGCGCCATAGACATAGTCTTGTCTTTAGGATAGGTGATATTGATGCATTT-
259 TCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGC-TTTG
* * * * * *
156267 GTTTCAG-AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTGTAAGTTCGTACCACATATAAG
323 GTTTC-GCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
* * * * * * *
156331 ATAAACATGGATTCTTGTAAGGAT-TTCATTGATTCTATGATTAGGCACTATAAACATATTCTCC
387 ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
* *
156395 TCATTAGAATAAAAGATATTGATGA
452 TCATTAGGATAAATGATATTGATGA
* * *
156420 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCATAAAATCAAAATTCATCCCATAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * * * *
156485 TAAGACAAGC-CCTGATTCTCGTAACAGTTTGCATTCCTTTCAAGATTGGGAAGCAAA-AGCACA
66 TATGACAAGCATC-GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CAAAGAACACA
* * * * * * * * * *
156548 ATCCCTTCGTTACGATACCTGACATTGAAGCTTTGGTGTCACGAG-AAAGCTTTTCTTTCAATCA
129 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCA
* ** * * *
156612 TTTTTGATTGAATCAAAGTTCATGTCTTAAATAAGACAAACATCAATACTCATACTAATCCCCAT
194 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * * * * * * * *
156677 TTTTTTCTGGATTAGGCATCATAAACCTTGTCTTCTTATAAGGATACACGATGTTGATGTTTTGA
259 TCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG
** * * *
156742 TTTCAAAAGAACGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGAC
324 TTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
* *
156807 AAACATGGATTCTAATAATGATCTTCATTCATTTTGTGATTAGGGACTATAAACACATTCTCCTC
389 AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC
*
156872 ATTAGGATAAATGACATTGATGA
454 ATTAGGATAAATGATATTGATGA
* *
156895 TTTTCTGTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATCCATCCCTTAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* ** * * **
156960 TATGACAAGCATCGATTCTCG-AGACAGCCTCCATTCTCATCAAGATTGGGAACCAAGAATAGTT
66 TATGACAAGCATCGATTCTCGTA-ACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACACAT
* * * *
157024 TCCCCTT-ATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTT-TTTCAACCA
130 T-CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCA
* * * * *
157087 TTTTTTATTGAATCAAAGTTTGTCTTTTAAATATGACAAACATGAATACTCATACTAATCCCCAT
194 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * ** *
157152 TCTTTTCAAGATTAGGTACCATAAACATAGTCTTCTCCGAAGGATACACAATATTGATGCTTTGG
259 TCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG
* * * * *
157217 TTTCGTAAGAAAGGCTTTCTTCCC-CCTAATTTTTCTAACGTATAAGTTCGTGCCTCAAATAAGA
324 TTTCGCAAGAAAGGCTTTCTTCCCACC-AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA
** * * * * *
157281 CAAACATGGATTCTAGTAATGATCTTTGTTCATTTTGTGATTAGACA-GATAAATA-GTTCTACT
388 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT
* *
157344 CGTTAGGATAAATGGTATTGATGA
453 CATTAGGATAAATGATATTGATGA
* *
157368 TTTTCTTTTGCATGG-AAT-TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCGTCTCTTAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
* * * *
157431 TAAGACGAGCATCGATTCTCGTAACTA-CCTCCATTCTTTTCTAGATTGGGAAC
66 TATGACAAGCATCGATTCTCGTAAC-AGTCTCCATTCTTTTCAAGATTGGGAAC
157484 TGTAAACACT
Statistics
Matches: 9601, Mismatches: 1683, Indels: 420
0.82 0.14 0.04
Matches are distributed among these distances:
463 1 0.00
464 268 0.03
465 51 0.01
466 80 0.01
468 4 0.00
469 170 0.02
470 229 0.02
471 216 0.02
472 125 0.01
473 1188 0.12
474 2205 0.23
475 3140 0.33
476 1265 0.13
477 390 0.04
478 265 0.03
479 4 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
TATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACAAAGAACACATT
CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATT
TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC
TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTT
TCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA
ACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAT
TAGGATAAATGATATTGATGA
Found at i:157629 original size:49 final size:48
Alignment explanation
Indices: 157574--157995 Score: 478
Period size: 49 Copynumber: 8.9 Consensus size: 48
157564 GACGAATTCA
*
157574 ATTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTC
* *
157622 AATTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--C
1 -ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTC
* *
157668 --TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCATCTTC
1 ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTC
* * *
157714 ATCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCA-C--C
1 AT-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTC
* * *
157760 --TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTC
1 ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTC
* * *
157806 ATCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTC
1 AT-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTC
*
157855 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA-C--C
1 AT-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTC
*
157901 --TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCC
1 ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA--TCTT-C
* * * * *
157950 ATCTTTAAGTTCAATGTTGCTGGCCTTGAATCAGCACATTGACATC
1 AT-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATC
157996 CTTTTTCTCA
Statistics
Matches: 322, Mismatches: 30, Indels: 41
0.82 0.08 0.10
Matches are distributed among these distances:
43 113 0.35
44 2 0.01
46 5 0.02
48 3 0.01
49 162 0.50
50 1 0.00
52 36 0.11
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (48 bp):
ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTC
Found at i:157733 original size:92 final size:92
Alignment explanation
Indices: 157576--157946 Score: 513
Period size: 92 Copynumber: 4.0 Consensus size: 92
157566 CGAATTCAAT
* *
157576 TTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTCAAT-TTTAAGTCCAATGTA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC-ATCTTTAAGTCCAATATA
*
157640 GCTGGCCTTGAATCAGCACATTGGCACC
65 GCTAGCCTTGAATCAGCACATTGGCACC
* *
157668 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCATCTTCATCTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATATAG
157733 CTAGCCTTGAATCAGCACATTGGCACC
66 CTAGCCTTGAATCAGCACATTGGCACC
* * *
157760 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATATAG
*
157825 CTAGCCTTGAATCAGCATATTGGCACCTTCATC
66 CTAGCCTTGAATCAGCACATTGGCA----C--C
* *
157858 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATATAG
* *
157917 CTGGCCTTGAATCAGCATATTGGCACC
66 CTAGCCTTGAATCAGCACATTGGCACC
157944 TTT
1 TTT
157947 TCCATCTTTA
Statistics
Matches: 258, Mismatches: 14, Indels: 20
0.88 0.05 0.07
Matches are distributed among these distances:
86 4 0.02
88 1 0.00
91 2 0.01
92 210 0.81
94 1 0.00
96 1 0.00
98 39 0.15
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (92 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATATAG
CTAGCCTTGAATCAGCACATTGGCACC
Found at i:157832 original size:141 final size:141
Alignment explanation
Indices: 157576--157985 Score: 571
Period size: 141 Copynumber: 2.9 Consensus size: 141
157566 CGAATTCAAT
* * *
157576 TTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCATCTTCAATTTTAAGTCCAATGTAG
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA-C--C---TTTAAGTCCAATATAG
*
157641 CTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGC
60 CTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGC
*
157700 ATATTAGCATCTTCATC
125 ATATTAGCACCTTCATC
* * * *
157717 TTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGTTGGCC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCC
* *
157782 TTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTG
66 TTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTA
157847 GCACCTTCATC
131 GCACCTTCATC
157858 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCC
1 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCC
* * *
157923 TTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTTGCTGGCCTTGAATCAGCA
66 TTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCA
157986 CATTGACATC
Statistics
Matches: 241, Mismatches: 19, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
135 37 0.15
138 1 0.00
139 1 0.00
140 1 0.00
141 166 0.69
143 2 0.01
144 33 0.14
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (141 bp):
TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGCC
TTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTA
GCACCTTCATC
Found at i:157902 original size:21 final size:21
Alignment explanation
Indices: 157878--157945 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
157868 ATGTAGCTGG
157878 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
* ** *
157899 CCTTTAAGTCCAATATAGCTGG--
1 CCTTGAA-T-CAGCATA-TTGGCA
157921 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
157942 CCTT
1 CCTT
157946 TTCCATCTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
19 3 0.09
20 5 0.15
21 11 0.32
22 7 0.21
23 5 0.15
24 3 0.09
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (21 bp):
CCTTGAATCAGCATATTGGCA
Found at i:157924 original size:22 final size:22
Alignment explanation
Indices: 157857--157924 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 22
157847 GCACCTTCAT
*
157857 CTTTAAGTCCAATGTAGCTGGC
1 CTTTAAGTCCAATATAGCTGGC
* ** *
157879 CTTGAA-T-CAGCATA-TTGGCAC
1 CTTTAAGTCCAATATAGCTGG--C
157900 CTTTAAGTCCAATATAGCTGGC
1 CTTTAAGTCCAATATAGCTGGC
157922 CTT
1 CTT
157925 GAATCAGCAT
Statistics
Matches: 32, Mismatches: 9, Indels: 10
0.63 0.18 0.20
Matches are distributed among these distances:
19 3 0.09
20 4 0.12
21 7 0.22
22 10 0.31
23 5 0.16
24 3 0.09
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (22 bp):
CTTTAAGTCCAATATAGCTGGC
Found at i:157936 original size:22 final size:22
Alignment explanation
Indices: 157871--157936 Score: 52
Period size: 22 Copynumber: 3.0 Consensus size: 22
157861 AAGTCCAATG
157871 TAGCTGGCCTTGAATCAGCATA
1 TAGCTGGCCTTGAATCAGCATA
*
157893 T---TGGCACCTTTAAGTC--CAATA
1 TAGCTGG--CCTTGAA-TCAGC-ATA
157914 TAGCTGGCCTTGAATCAGCATA
1 TAGCTGGCCTTGAATCAGCATA
157936 T
1 T
157937 TGGCACCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 18
0.62 0.04 0.34
Matches are distributed among these distances:
19 3 0.09
20 1 0.03
21 12 0.36
22 13 0.39
23 1 0.03
24 3 0.09
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (22 bp):
TAGCTGGCCTTGAATCAGCATA
Found at i:157978 original size:52 final size:53
Alignment explanation
Indices: 157900--158053 Score: 177
Period size: 52 Copynumber: 2.9 Consensus size: 53
157890 ATATTGGCAC
157900 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCAT
* * * * *
157952 CTTTAAGTTCAATGTTGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTCTCAT
* * * * *
158007 CTTTAAGCCCAATATCGTTGG-CTATGAATCAACATATTGGCATCTTT
1 CTTTAAGTCCAATATAGCTGGCCT-TGAATCAGCATATTGGCACCTTT
158054 ATCACTTTTC
Statistics
Matches: 84, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
52 37 0.44
53 5 0.06
54 8 0.10
55 34 0.40
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (53 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCAT
Found at i:158191 original size:232 final size:232
Alignment explanation
Indices: 157918--158335 Score: 614
Period size: 232 Copynumber: 1.8 Consensus size: 232
157908 CCAATATAGC
* * * *
157918 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGT-TCAATGTTGCTGGCCTTGAATC
1 TGGCCTTGAATCAGCATATTGACACCTTTTCCATCTTTAAGTCT-AATGTCGCTGACCGTGAAT-
*
157982 AGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGGCTATGAATCAACATATTG
64 AGCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCCATGAATCAACATATTG
* * *
158046 G-CATCTTTATCACTTTTC-TCACT-TTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCA
128 GTC-TCTTTATCACTCTTCATC-CTCATCATCTTTAAGTCCAATGTCGCAGGCCTTGAATCAGCA
158108 CATTGGCACCTTCATCTTTAACATTCCTTAACCCAATGTTGT
191 CATTGGCACCTTCATCTTTAACATTCCTTAACCCAATGTTGT
*
158150 TGGCCTTGAATCAGCATATTGACA-TTTTTCTCATCTTTAAGTCTAATGTCGCTGACCGTGAATA
1 TGGCCTTGAATCAGCATATTGACACCTTTTC-CATCTTTAAGTCTAATGTCGCTGACCGTGAATA
**
158214 GCACATTGACATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCCATGAATCAATGTATTGGT
65 GCACATTGACATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCCATGAATCAACATATTGGT
* * *
158279 CTTTTTATCACTCTTCATCCTCATCATCTTTAAGTCCAGTGTGGCAGGCCTTGAATC
130 CTCTTTATCACTCTTCATCCTCATCATCTTTAAGTCCAATGTCGCAGGCCTTGAATC
158336 TGAACAGTGG
Statistics
Matches: 166, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
231 79 0.48
232 86 0.52
233 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.38
Consensus pattern (232 bp):
TGGCCTTGAATCAGCATATTGACACCTTTTCCATCTTTAAGTCTAATGTCGCTGACCGTGAATAG
CACATTGACATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCCATGAATCAACATATTGGTC
TCTTTATCACTCTTCATCCTCATCATCTTTAAGTCCAATGTCGCAGGCCTTGAATCAGCACATTG
GCACCTTCATCTTTAACATTCCTTAACCCAATGTTGT
Found at i:158266 original size:54 final size:51
Alignment explanation
Indices: 158135--158268 Score: 135
Period size: 54 Copynumber: 2.5 Consensus size: 51
158125 TTAACATTCC
* * *
158135 TTAACCCAATGTTGTTGGCCTTGAATCAGCATATTGACATTTTTCTCATCT
1 TTAACCCAATGTCGTTGGCCATGAATCAGCACATTGACATTTTTCTCATCT
* * * * *
158186 TTAAGTCTAATGTCGCTGACCGTGAAT-AGCACATTGACATCCTTTTTCTCATCT
1 TTAA-CCCAATGTCGTTGGCCATGAATCAGCACATTGACA---TTTTTCTCATCT
*
158240 TTGAACCCAATATCGTTGGCCATGAATCA
1 TT-AACCCAATGTCGTTGGCCATGAATCA
158269 ATGTATTGGT
Statistics
Matches: 64, Mismatches: 13, Indels: 8
0.75 0.15 0.09
Matches are distributed among these distances:
51 15 0.23
52 16 0.25
54 30 0.47
55 3 0.05
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (51 bp):
TTAACCCAATGTCGTTGGCCATGAATCAGCACATTGACATTTTTCTCATCT
Found at i:158284 original size:106 final size:108
Alignment explanation
Indices: 158070--158269 Score: 230
Period size: 110 Copynumber: 1.9 Consensus size: 108
158060 TTTCTCACTT
* * *
158070 TCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAACATTCC
1 TCATCTTTAAGTCCAATGTCGCTGACCGTGAATCAGCACATTGACACCTT-ATCTTT-ACATTCC
* * * * *
158135 TTAACCCAATGTTGTTGGCCTTGAATCAGCATATTGACATTTTTC
64 TTAACCCAATATCGTTGGCCATGAATCAACATATTGACATTTTTA
* *
158180 TCATCTTTAAGTCTAATGTCGCTGACCGTGAAT-AGCACATTGACATCCTT-T-TTCT-CA-TCT
1 TCATCTTTAAGTCCAATGTCGCTGACCGTGAATCAGCACATTGACA-CCTTATCTT-TACATTCC
158240 TTGAACCCAATATCGTTGGCCATGAATCAA
64 TT-AACCCAATATCGTTGGCCATGAATCAA
158270 TGTATTGGTC
Statistics
Matches: 78, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
105 4 0.05
106 25 0.32
107 2 0.03
108 2 0.03
109 11 0.14
110 34 0.44
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (108 bp):
TCATCTTTAAGTCCAATGTCGCTGACCGTGAATCAGCACATTGACACCTTATCTTTACATTCCTT
AACCCAATATCGTTGGCCATGAATCAACATATTGACATTTTTA
Found at i:158763 original size:49 final size:47
Alignment explanation
Indices: 158708--159157 Score: 545
Period size: 49 Copynumber: 9.7 Consensus size: 47
158698 GACGAATTCA
* *
158708 ATTTTAAGTCCAATATTGCTGGCCTTGAATCAGTATATTGGCATCTTC
1 ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTC
* *
158756 AATTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC--C
1 -ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTC
*
158802 --TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTC
* *
158848 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC--C
1 AT-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTC
* *
158894 --TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCATCTTC
1 ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTC
* * *
158940 ATCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCAC--C
1 AT-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTC
* *
158986 --TTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGGCACCTTC
1 ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTC
*
159032 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTC
1 AT-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CTTC
* *
159081 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC--C
1 AT-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTC
159127 --TTTAAGTCCAATATAGCTGGCCTTGAATCAG
1 ATTTTAAGTCCAATATAGCTGGCCTTGAATCAG
159158 TATAATGGTT
Statistics
Matches: 354, Mismatches: 29, Indels: 42
0.83 0.07 0.10
Matches are distributed among these distances:
43 141 0.40
44 3 0.01
46 7 0.02
48 4 0.01
49 199 0.56
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (47 bp):
ATTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACTTC
Found at i:158867 original size:92 final size:92
Alignment explanation
Indices: 158710--159157 Score: 667
Period size: 92 Copynumber: 4.9 Consensus size: 92
158700 CGAATTCAAT
* *
158710 TTTAAGTCCAATATTGCTGGCCTTGAATCAGTATATTGGCATCTTCAAT-TTTAAGTCCAATGTA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC-ATCTTTAAGTCCAATGTA
158774 GCTGGCCTTGAATCAGCACATTGGCACC
65 GCTGGCCTTGAATCAGCACATTGGCACC
158802 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
158867 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
*
158894 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCATCTTCATCTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
*
158959 CTAGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
* * * *
158986 TTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGGCACCTTCATCTTTAAGTCCAATATCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
*
159051 CTGGCCTTGAATCAGCATATTGGCACCTTCATC
66 CTGGCCTTGAATCAGCACATTGGCA----C--C
* * * *
159084 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
159143 CTGGCCTTGAATCAG
66 CTGGCCTTGAATCAG
159158 TATAATGGTT
Statistics
Matches: 333, Mismatches: 16, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
91 2 0.01
92 291 0.87
94 1 0.00
96 1 0.00
98 38 0.11
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (92 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAG
CTGGCCTTGAATCAGCACATTGGCACC
Found at i:159158 original size:141 final size:139
Alignment explanation
Indices: 158710--159161 Score: 611
Period size: 141 Copynumber: 3.3 Consensus size: 139
158700 CGAATTCAAT
* * *
158710 TTTAAGTCCAATATTGCTGGCCTTGAATCAGTATATTGGCATCTTCAAT-TTTAAGTCCAATGTA
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGTATATTGGCA-CTTC-ATCTTTAAGTCCAATATC
* * *
158774 GCTGGCCTTGAATCAGCACATTGGCA---C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGC
64 GCTGGCCTTGAATCAGCATATTGGCACTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGC
*
158834 ATATTGGCATCTTCATC
129 ACATTGGCA----C--C
* * *
158851 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--CTTTAAGTCCAATATCGC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGTATATTGGCACTTCATCTTTAAGTCCAATATCGC
* *
158911 TGGCCTTGAATCAGCATATTAGCATCTTCATCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCA
66 TGGCCTTGAATCAGCATATTGGCA-CTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCA
158976 CATTGGCACC
130 CATTGGCACC
*
158986 TTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGGCACCTTCATCTTTAAGTCCAATATCG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGTATATTGGCA-CTTCATCTTTAAGTCCAATATCG
159051 CTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGC
65 CTGGCCTTGAATCAGCATATTGGCA-CTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGC
159116 ACATTGGCACC
129 ACATTGGCACC
159127 TTTAAGTCCAATATAGCTGGCCTTGAATCAGTATA
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGTATA
159162 ATGGTTTTTT
Statistics
Matches: 278, Mismatches: 20, Indels: 26
0.86 0.06 0.08
Matches are distributed among these distances:
135 75 0.27
137 2 0.01
139 2 0.01
141 199 0.72
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (139 bp):
TTTAAGTCCAATATAGCTGGCCTTGAATCAGTATATTGGCACTTCATCTTTAAGTCCAATATCGC
TGGCCTTGAATCAGCATATTGGCACTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
ATTGGCACC
Found at i:159387 original size:13 final size:13
Alignment explanation
Indices: 159369--159393 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
159359 CATAAAGTGT
159369 TGTATCGATACAA
1 TGTATCGATACAA
159382 TGTATCGATACA
1 TGTATCGATACA
159394 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:159404 original size:32 final size:33
Alignment explanation
Indices: 159351--159414 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 33
159341 CAATGATTTT
159351 TATCGATACATAAAGTGTTGTATCGATACAATG
1 TATCGATACATAAAGTGTTGTATCGATACAATG
159384 TATCGATACAT-AAGTGTTGTATCGATACAAT
1 TATCGATACATAAAGTGTTGTATCGATACAAT
159415 TTAAGCTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 20 0.65
33 11 0.35
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.34
Consensus pattern (33 bp):
TATCGATACATAAAGTGTTGTATCGATACAATG
Found at i:159406 original size:19 final size:19
Alignment explanation
Indices: 159351--159412 Score: 73
Period size: 19 Copynumber: 3.5 Consensus size: 19
159341 CAATGATTTT
159351 TATCGATACATAAAGTGTTG
1 TATCGATACAT-AAGTGTTG
159371 TATCGATAC--AA----TG
1 TATCGATACATAAGTGTTG
159384 TATCGATACATAAGTGTTG
1 TATCGATACATAAGTGTTG
159403 TATCGATACA
1 TATCGATACA
159413 ATTTAAGCTA
Statistics
Matches: 36, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
13 11 0.31
15 2 0.06
17 2 0.06
19 12 0.33
20 9 0.25
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (19 bp):
TATCGATACATAAGTGTTG
Found at i:159517 original size:52 final size:50
Alignment explanation
Indices: 159454--159599 Score: 202
Period size: 52 Copynumber: 2.8 Consensus size: 50
159444 CATTACTCAA
* *
159454 ATGTATCGATACACTGATCTTTGTATCGATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACACT-AT-TATGTATCGATACATGCAGGCAAAATTGCCCAG
* *
159506 ATGTATCGATACACTATAAAATGTATCAATACATGCAGGCAAAATTGCCCAG
1 ATGTATCGATACACTAT--TATGTATCGATACATGCAGGCAAAATTGCCCAG
159558 ATGTATCGATACACTATTAAATGTATCGATACATGCAGGCAA
1 ATGTATCGATACACTATT--ATGTATCGATACATGCAGGCAA
159600 CTTTTCATAT
Statistics
Matches: 84, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
51 2 0.02
52 82 0.98
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (50 bp):
ATGTATCGATACACTATTATGTATCGATACATGCAGGCAAAATTGCCCAG
Found at i:164331 original size:476 final size:474
Alignment explanation
Indices: 162683--168269 Score: 6061
Period size: 476 Copynumber: 11.8 Consensus size: 474
162673 CGTTATGACA
*** * * * ** *
162683 GGAACCAAGAACACATTTTGTT-AGTAGGA-AAATGACATTGATGTTTTGGTACCACAAGAAAAG
1 GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * * *
162746 CTTTTATTTTCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGT
66 GTTTTCTTTCCACC-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* * * ** * * *
162811 CATACTAATCCCCATTCTTTTCAAGATTGGGCACCATAAATGTAGTCTTTTCATTAGGATACAAG
130 CATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
* * * * ** * * *
162876 ATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCTTCCCCCGATTTTCATAGAGTCTAAGCTCAT
195 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACAATTTTTGTAAAGTCTAAGTTCGT
* * ** * *
162941 GCCTCAAATGAGACAAAGATGGATTCTAGTAACGATCTTTGTTCATTTAGTGATTAGACACTATA
260 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * *
163006 AACACTTTCCCCTCATTTA-GATAAATGATATTGATGATTTTCTTTTCCGTGGAAATCTTTTCTT
325 AACACTTTCTCCTCA-TTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * * * *
163070 TGCCTTATTTTCCTAAAAATCAAAATTTATCCTTTAAATAAGGCAAACATC-ACTTCTCATAACA
389 TGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGA-TTCTCGTAACA
*
163134 GTCTCCATTCTTTTCAATATTG
453 GTCTCCATTCTTTTCAAGATTG
* * * * * * *
163156 GAAACCAAGAACACATTCTCGTT-ATCAGGATACTTGACA-TGAATGCCTTGGTGTCCCAAGAAG
1 GGAACCAAGAACACATTC-CCTTCATTAGGATACATGACATTG-ATGCTTTGGTGTCGCAAGAAA
* * * * * * * *
163219 TGGTTTTATTTCCACAATTTTTAATTGATTCAAAGTTTGTCTCTCAAATAAGACAAACATGAAAA
64 AGGTTTTCTTTCCAC-CTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * * * * * *
163284 GTAATACAAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATTGTCTTTTTATAAGAATAGA
128 GTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
*
163349 CGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCGTCCCACCAATTTTTGTAAAGTCTAAGTT
193 CGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCA-CAATTTTTGTAAAGTCTAAGTT
* ** * * * *
163414 CATGCCTCAAATGAGATTAACATGGGTTCTAGTAATGATCTTCATTTATTTTGTGATTAAGAACT
257 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
*
163479 ATAAACACATTT-TCCTCCTTAGGATAAATGATATTGAAT-ATTTTCTTTTGCAT-GAAAGTCTT
322 ATAAACAC-TTTCTCCTCATTAGGATAAATGATATTG-ATGATTTTCTTTTGCATGGAAA-TC--
* * *
163541 TTTTTTTTGCCCTATTTTCCATAAAATCAAAATTCATCCC-TAAACTAAGACAAGAATCGATTCT
382 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA-TAAGACAAGCATCGATTCT
* **
163605 CGTAATAGTCTCTTTTCTTTTCAAGATTG
446 CGTAACAGTCTCCATTCTTTTCAAGATTG
** * * *
163634 GGAAGTAA-AAGCATATTCCCTTCATTAGGGTACATGACATCT-ACGCTTTGGTGTCGCAAGGAA
1 GGAACCAAGAA-CACATTCCCTTCATTAGGATACATGACAT-TGATGCTTTGGTGTCGCAA-GAA
* * * * *
163697 CA-GTTTCCTTTCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACATGAGT
63 AAGGTTTTCTTTCCACC-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* * * * *
163761 AGTCATACTAATCCTCTTTCTTTTCAGGATTAGGCACC-TGAAACATTGTCTTCCCATAAGGATA
127 AGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCAT-AAACATAGTCTTCTCATAAGGATA
* ** * *
163825 CATGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTTCCCACAATTTTTGTAGAGTCTAAA
191 CACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCACAATTTTTGTAAAGTCTAAG
* *
163890 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGACA
255 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
* * * * * *
163955 CTATAAACATTTTTTTCTCATTAAGATAAATGATATTAATGATTTTCTTTTGCATGAAAATCTTT
320 CTATAAACACTTTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
* * * *
164020 TCTTTGCCTTATTGTCCTTAAAATCAAAATTCTTCCCTTAAATAAGACAAGCATCGATTCTCATA
385 TCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTA
*
164085 ACAGTCTCCATTCTTTTCAAGATTA
450 ACAGTCTCCATTCTTTTCAAGATTG
* * * * ** *
164110 AGAACCAAGAATACATTCCCGTT-ATTAGGATACATTACGTTGATGCTTTGGTGTCGTGAGAATA
1 GGAACCAAGAACACATTCCC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
* * * *
164174 GCTTTTTTTTTCCATCCTTTTTGATAGAATCAAAGTTTCTCTCTTAAATAAGACAAACATGAGTA
65 G-GTTTTCTTTCCA-CCTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
** * *
164239 GTTGTACTAA-CCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCAAAAGGATACA
128 GTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* * * * *
164303 CAATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCCCCAATTTTTGTAATGTATAAGTT
193 CGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCCACAATTTTTGTAAAGTCTAAGTT
* * * ** * *
164368 GGTGCCTCAAATGAGACATACATGGATTCTAGGAATGATCTTTGTTCATTTTGTGATTAGACATT
257 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
* * * * * *
164433 ACAAATAGTTTCTACTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATTTTTTC
322 ATAAACACTTTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTC
* * * *
164498 TTTGCCCTATTTTCCTTAAAATCAACATTCATCCTTTAAATAAGACAAGCATCTATTCTCCTAAC
387 TTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
* * *
164563 TGTATCCATTCTTTTCAAGATTT
452 AGTCTCCATTCTTTTCAAGATTG
* * *
164586 GGAACTAAGAACACATTCCCGTT-ATTAGGATACATGACATTGACGCTTTGATGTCGCAAGAAAA
1 GGAACCAAGAACACATTCCC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
* * * * * *
164650 GATTTTATTTCCATCATTTTTTATAGAATCAAAGTTTGTCTCTCAAATACGACAAACATGAATAG
65 GGTTTTCTTTCCA-CCTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* * *
164715 TCATACTAATCCCCATTCTTTTCT-GGATTAGGCTCCATAAACATAGTCTTTTCATAACGATACA
129 TCATACTAATCCCCATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* * * * *
164779 GGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCGTCCCCTCAATTTTTGTACAGTCTAAGTT
193 CGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCACAATTTTTGTAAAGTCTAAGTT
* * * *
164844 CGTGTCTCAAATGGGACAAACATGGATTCTAGTAATGATATTCAATCATTTTGTGATTAGGCACT
257 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
* * * * *
164909 ATAAACACATTCTCCTTATTAGGATAAATGACATTGATGATTTCCTTTTGCATGGAAATCTTTTT
322 ATAAACACTTTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTC
* * * * ** *
164974 TTTGCCCTATTTTCATTAAAATCAAAA-TCTATCCTTTAAATATGACAAACATCCCTTCTCTTAA
387 TTTGCCCTATTTTCCTTAAAATCAAAATTC-ATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
** * *
165038 GTGTCTCCAGTCTTTTCGAGATTG
451 CAGTCTCCATTCTTTTCAAGATTG
* * * * * *
165062 GGAACTAAGAACACATTCCCTTCGTTAGGATACAGGACATTGGTG-TATTGGTGCCACAAGAAAA
1 GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT-TTGGTGTCGCAAGAAAA
* * *
165126 GGTTTTCTTTCCATCATTTTTCATAGAATCAAAGTTTGTATCTTAAATAAGAC-AACATGAATAG
65 GGTTTTCTTTCCA-CCTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG
* * * *
165190 TCATACTAAT-CCCATTCTTTTCAAGATTAGGCACCATAGATATAGTCTTCTCATAAGGATACAC
129 TCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
* * * *** *** * * *
165254 AATATTGACGCTATCACTTCATGAGAAAGACTTTCTTCCCACCAATTTTTGCAGAGTCTAAGTTC
194 GATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCA-CAATTTTTGTAAAGTCTAAGTTC
*
165319 GTGCCTCAAATGAGACAAACATGGATTCCAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
258 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* * * *
165384 TAAACACATTCTCCTCATTAGGATAAATGATATTGGTGATTTTCTTTTACATGGAAATCTTTTTT
323 TAAACACTTTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
* ** ** * * *
165449 TTGCACTATTTTCAATAAAATCAAAATTCATCCCTTAGGTAAGACAGGCATCGATTCTCATAATA
388 TTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* *
165514 GTCTCTATTCTTTTCAAGATTC
453 GTCTCCATTCTTTTCAAGATTG
** * * * * *
165536 AAAAGCAA-AAGCACATTCCCCTCATTAGGATACATGACATTGATGCTTTAGTGTCGTGAA-AGA
1 GGAACCAAGAA-CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG-CAAGAAA
** *
165599 AGGTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCATAAATAAGACAAACATGAATA
64 AGGTTTTCTTTCCA-CCTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * * *
165664 GTCATACTAATCCTCATTCTTTTCTA-GATTATGCACCATAAACATTGTCTTCTCGTAAGGATAC
128 GTCATACTAATCCCCATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* * * * * * **
165728 TA-GATATTGACGCTTTGGTTTTGCAAGAAAAGCTTTCTTCGGCTCAGTTTTTGTGGAGTCTAAG
192 -ACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CCACAATTTTTGTAAAGTCTAAG
* * * *
165792 TTCGTACCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCACTTCGT-AGTTAGGC
255 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA-TTAGGC
* * * *
165856 ACTATAAACA-TATTCTCCTCGTTAGGATAAATGACATTGATGATTTTCTTTTGCATGAAAATAT
319 ACTATAAACACT-TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * * *
165920 TTTCTTGGCCTTTTTTTCCATAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCG
383 TTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCG
* ** * *
165985 TAACAATCTCCATTCTTTGAAATATTA
448 TAACAGTCTCCATTCTTTTCAAGATTG
* * *
166012 GGAACCAGGAACACATTCCCGTT-TTTAGGATACATGCCATTGATGCTTTGGTGTCGCAAGAAAA
1 GGAACCAAGAACACATTCCC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
* * * *
166076 GGTTTTCTTTCCACATTTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGCCAAATATGAATAGT
65 GGTTTTCTTTCCACCTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* * * ** * * * * *
166141 CAAACAAATCCCCATTCTTTCTAGGATTAGGCACTTTAAACATTGTCCTCTCAAAAGGATAGATG
130 CATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
** * *
166206 ATATTGATGCTTTGGTTTCATAATAAAGGCTTTCATCCCACCAATTTTTGTAAAGTCTAAGTTCG
195 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCA-CAATTTTTGTAAAGTCTAAGTTCG
* * *
166271 TGCCTCAAAAGAGACAAACATGGATTTTAGTAATGATCTTCGTTCATTTTGTGATTAGGCACTAT
259 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * *
166336 AAACACTTTCTCCTCATTAGGATAAATGATATTGATTG-TTTTATTTTGCTTGAAAATCTTTTGT
324 AAACACTTTCTCCTCATTAGGATAAATGATATTGA-TGATTTTCTTTTGCATGGAAATCTTTTCT
* ** *
166400 TTGCCCTATTTTCATTAAAATCAAAATTCATCCCTTAGTTAAGACAAGAATCGATTCTCGTAACA
388 TTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* *
166465 GGCTCC-TTTTTTTCCAAGATTG
453 GTCTCCATTCTTTT-CAAGATTG
* ** * * *
166487 GGAAGCAA-AAGCACATTCTTTTCCTTAGGATAAATGACATTGATGCTTTGGTGTAC-CAACAAA
1 GGAACCAAGAA-CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT-CGCAAGAAA
* * * * * *
166550 TGGTGTTATTTCCGCCATTTTTGATAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGAGTA
64 AGGTTTTCTTTCCACC-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * * * * *
166615 ATCATACTAATGCCCATCCTTTTCAGGATTAGGCACCTTAAACAGT-GTATTCTCATAAGGATAC
128 GTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACA-TAGTCTTCTCATAAGGATAC
* * * ** * * *
166679 ATGATATTAAGGCTTTGGTTTCATAAGAAAGGCTTTCTTACCCCCAATTTTTTTAGCA-TCTAAG
192 ACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCCACAATTTTTGTA-AAGTCTAAG
* * * ** * *
166743 TTCGTGTCTCAAATGAGATAAACACGGATTCTAGTAATGATCTTTGTTCATTTTGTGGTTAGACA
255 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
* * * *
166808 CTATATACACTTTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAATCTTT
320 CTATAAACACTTTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
* * * * *
166873 TTTTTGCCCTTTTTTCTTTAAAATCAAAATTTATCCCTTAAATATGACAAGCATCGATTCTCGTA
385 TCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTA
166938 ACAGT-TCCATTCTTTTCAAGATTG
450 ACAGTCTCCATTCTTTTCAAGATTG
* * * * * *
166962 GGAATCAAGAACACATTCCTTTCATTAGGATACATGCCAAT-AGCGCTTTGATGTCGCAAGAAAA
1 GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGTCGCAAGAAAA
* * * * * *
167026 GCTTTTTTTTCTACTGTTTTTTATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGGAA-A
65 GGTTTTCTTTCCAC-CTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATA
* * *
167090 CTCAAACTAATCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTATTCTCATAAGGATAC
128 GTCATACTAATCCCCATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* * *
167154 ACGATGTTGTTGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCAACAATTTTTGTAAAGTCTAAGTT
192 ACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACAATTTTTGTAAAGTCTAAGTT
* * * * * *
167219 CGTGCCTCAAATGAAATAAATATGGATTCTAGTAAGGAT-TTCATTAATTTTGTTATTAGGCACT
257 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
** * * *
167283 ATTGACA-TAT-T-CT--TTATGATAAAAGATATTGATGATTTTCTTTTGCATGGAAATCTTTTC
322 ATAAACACTTTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTC
**
167343 TTTGCCCTATTTTCCAAAAAATCAAAATTCATCCCTTTAAA-AAGACAAGCATCGATTCTCGTAA
387 TTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC-TTAAATAAGACAAGCATCGATTCTCGTAA
* * * *
167407 CAATTTCTATTCCTTTCAAGATTG
451 CAGTCTCCATTCTTTTCAAGATTG
** * * * *
167431 GGAAATAA-AAGCACAATCCCTTCATTACGATACCTGACCTTGATGCTTTGGTGTCGCAAGAAAA
1 GGAACCAAGAA-CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
* * * * *
167495 GCTTTTC-TTCCAACCGTTTTTGATAGAATTAAAGTCT-ACTTCTTAAATAAGATAAACATGAAT
65 GGTTTTCTTTCC-ACC-TTTTTGATAGAATCAAAGTTTGTC-TCTTAAATAAGACAAACATGAAT
* ** **
167558 AGTCATAATAATCCCCATTCTTTTCGGGATTAGGTGCCATAAACATTA-TCTTCT-ATAAGGATA
127 AGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACA-TAGTCTTCTCATAAGGATA
* *
167621 CACGATATTGACGCTTTGAG-TTCGCAAGAAAGGCTTT-TTCCCACCAGTTTTTGTAAAGTCTAA
191 CACGATATTGATGCTTTG-GTTTCGCAAGAAAGGCTTTCTTCCCA-CAATTTTTGTAAAGTCTAA
* * * * *
167684 ATTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTTATTAGTC
254 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * ** * *
167749 ACAATAAATACTTTCTCCTTGTTAGGATAAATTATATTGATGATTTT-TGTTTTCATGGAAATCT
319 ACTATAAACACTTTCTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCATGGAAATCT
* * * * * * *
167813 TTTTTTTAG-CCTATTCTCCTTAAAATAAAAAATCATCCTTTAAATATGACAAGCAGCGATTCTC
383 TTTCTTT-GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * ** *
167877 ATAACAGTCTCCATTGTTTTTGAGATTA
447 GTAACAGTCTCCATTCTTTTCAAGATTG
* * * * * * *
167905 GGAACTAAGAACACATTCCCTTCAATAGAATACATGACACTGTTGTTTTGGTGTTGCAAGAAAAG
1 GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
** * * *
167970 CATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAACACAAACAAGAATAGT
66 GTTTTCTTTCCACC-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGT
* * * * * *
168035 CATACTAATCCCTATTCATTTTAGGATTAGGCACCATGAACATAGTCTGCTCATTAGGATACAAG
130 CATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
* ** * * *
168100 GTATTGACACTTTGGTTT-GCAAAAAAGGCTTTTTTCTCTC-CAACTTTTGTAAAGTCTAAGTTC
195 ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-C-CACAATTTTTGTAAAGTCTAAGTTC
* * * * * *
168163 ATGCCTCAAATGAGACAAACATGGATTTTGGTAAGGATCTTCATTCATTTTGTGGTTAGGCACGA
258 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
*
168228 TAAACACTTTCCCCTCATTAGGATAAATGA-ATTTGATGATTT
323 TAAACACTTTCTCCTCATTAGGATAAATGATA-TTGATGATTT
168270 CGTTTTTGCA
Statistics
Matches: 4294, Mismatches: 710, Indels: 218
0.82 0.14 0.04
Matches are distributed among these distances:
467 5 0.00
468 202 0.05
469 181 0.04
470 7 0.00
471 2 0.00
472 4 0.00
473 55 0.01
474 707 0.16
475 1019 0.24
476 1625 0.38
477 105 0.02
478 369 0.09
479 12 0.00
480 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (474 bp):
GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
GTTTTCTTTCCACCTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
ATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA
TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACAATTTTTGTAAAGTCTAAGTTCGTG
CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
ACACTTTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
CCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTC
TCCATTCTTTTCAAGATTG
Found at i:168222 original size:157 final size:159
Alignment explanation
Indices: 168048--168413 Score: 411
Period size: 159 Copynumber: 2.3 Consensus size: 159
168038 ACTAATCCCT
* * * *
168048 ATTCATTTTAG-GATTAGGCACCATGAACA-TAGTCTGCTCATTAGGATACAAGGTA-TTGA-CA
1 ATTCATTTT-GTGATTAGGCACCATAAACACT-TTCTCCTCATTAGGATA-AAGGAATTTGATCA
* * *
168109 CTTT-G-GTTTGCAAAAAAGGCTTTTTTCTCTCCAACTTTTGTAAAGTCTAAGTTCATGCCTCAA
63 -TTTCGTGTTTGCAAAAAAGGCTTTCTTCCCACCAACTTTTGTAAAGTCTAAGTTCATGCCTCAA
* *
168172 ATGAGACAAACATGGATTTTGGTAAGGATCTTC
127 ATGAGACAAACATGGATTGTAGTAAGGATCTTC
* * * * *
168205 ATTCATTTTGTGGTTAGGCACGATAAACACTTTCCCCTCATTAGGATAAATGAATTTGATGATTT
1 ATTCATTTTGTGATTAGGCACCATAAACACTTTCTCCTCATTAGGATAAAGGAATTTGATCATTT
* * ** * * * * *
168270 CGTTTTTGCAAGAAAGGCTTTCTTCCCACTGATTTTTGTATAGTCTCAGTTCATGGCTTAAATGA
66 CGTGTTTGCAAAAAAGGCTTTCTTCCCACCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
*
168335 GACAAACATGGATTGTAGTAATGATCTTC
131 GACAAACATGGATTGTAGTAAGGATCTTC
* * *
168364 ATTTATTTTGTAATTAGGCACTATAAACACTTTCTCCTCATTAGGATAAA
1 ATTCATTTTGTGATTAGGCACCATAAACACTTTCTCCTCATTAGGATAAA
168414 TGATATTGAT
Statistics
Matches: 174, Mismatches: 29, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
156 5 0.03
157 45 0.26
158 3 0.02
159 121 0.70
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37
Consensus pattern (159 bp):
ATTCATTTTGTGATTAGGCACCATAAACACTTTCTCCTCATTAGGATAAAGGAATTTGATCATTT
CGTGTTTGCAAAAAAGGCTTTCTTCCCACCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
GACAAACATGGATTGTAGTAAGGATCTTC
Found at i:168321 original size:159 final size:160
Alignment explanation
Indices: 168144--169539 Score: 527
Period size: 159 Copynumber: 8.8 Consensus size: 160
168134 TCTCTCCAAC
* *
168144 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTTTGGTAAGGATCTTCATTC
1 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTGTAGTAAGGATCTTCATTC
**
168209 ATTTTGTGGTTAGGCACGATAAACACTTTCCCCTCATTAGGATAAATGA-ATTTGATGA-TTTCG
66 ATTTTGTAATTAGGCACGATAAACACTTTCCCCTCATTAGGATAAATGATA-TTGATGATTTTCG
168272 TTTTTGCAAGAAAGGCTTTCTTCCCACTGAT
130 TTTTTGCAAGAAAGGCTTTCTTCCCACTGAT
* * * * * *
168303 TTTTGTATAGTCTCAGTTCATGGCTTAAATGAGACAAACATGGATTGTAGTAATGATCTTCATTT
1 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTGTAGTAAGGATCTTCATTC
* *
168368 ATTTTGTAATTAGGCACTATAAACACTTTCTCCTCATTAGGATAAATGATATTGATGATTTTCG-
66 ATTTTGTAATTAGGCACGATAAACACTTTCCCCTCATTAGGATAAATGATATTGATGATTTTCGT
* * *
168432 -TTTGCATGGAAA-TCTTTTCTTTGCC-CT-AT
131 TTTTGCA-AGAAAGGC-TTTC-TTCCCACTGAT
* * * * * * * * * * *
168461 TTTTCTTAAAATCAAAATTCATCCCTTAAAT-ATAACAAACATCGATTCTCA-TAAGGGTCTCCA
1 TTTT-GTAAAGTCTAAGTTCATGCCTCAAATGA-GACAAACATGGATTGT-AGTAAGGATCTTCA
* * * * ** * * * *
168524 CTTC-TTTCG-AGATTGGGAAC--TAAGA-A----CACCTTGTTAGGATACATAACATTGATG-G
63 -TTCATTTTGTA-ATTAGGCACGATAA-ACACTTTCCCCTCATTAGGATAAATGATATTGATGAT
* * * * * * *
168579 TTT-GGTGTCGCAAGAAAAGCTTTTCTTTCAACCG-T
125 TTTCGTTTTTGCAAGAAAGGC-TTTCTTCCCACTGAT
* * * * ** ** **
168614 TTTTGATAGAA-TCAAAG-T-ATGCCTATTAAATAAGACAAACATGCACAGTCA-TAATAATCCC
1 TTTTG-TA-AAGTCTAAGTTCATGCC--TCAAATGAGACAAACATGGATTGT-AGTAAGGATCTT
* ** * *
168675 CATTC-TTTTCAG-GATTAGCTGC-C-ATAAACA-TTATCTTCT-ATAAGGAT-ATTCGATATTG
61 CATTCATTTT--GTAATTAG--GCACGATAAACACTT-TCCCCTCATTAGGATAAAT-GATATTG
* * * * * *
168733 ATG-CTTTGGTTTTCGCAAAAAAGGCTTTCTTCCCACAGAC
120 ATGATTTTCGTTTTTGCAAGAAAGGCTTTCTTCCCACTGAT
* * * * * *
168773 TTTTGTAAAGTGTAAGTTCGTGGCTCAAATGAGACAAACCTGGATTCTAGTAATGATCTTCATTC
1 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTGTAGTAAGGATCTTCATTC
* * * * * *
168838 ATTTCGTAATTAGGCACTATTAACACATTCACCTCATTAGGATAAATGTTATTGATGATTTTC--
66 ATTTTGTAATTAGGCACGATAAACACTTTCCCCTCATTAGGATAAATGATATTGATGATTTTCGT
* * ** *
168901 TTTTGTATGGAAA-TTTTTCTTTGGCCA---AT
131 TTTTGCA-AGAAAGGCTTTC-TT-CCCACTGAT
* * ** * * *
168930 TTTCCT-TAAAATCAAAAATCAT-CCTTTAAAT-ATGACAAACATCGATTCTCA-TAAGAGA-CT
1 TTT--TGTAAAGTCTAAGTTCATGCC-TCAAATGA-GACAAACATGGATTGT-AGTAAG-GATCT
* * * * * * * * * * *
168990 CCA-TCCTTTTTTAGATTAGGAACTA-AGAACACATTCCCTTCATTAGAATACATGACATTGTTG
60 TCATTCATTTTGTA-ATTAGGCACGATA-AACACTTTCCCCTCATTAGGATAAATGATATTGATG
* * ** * * *
169053 -TTTTAG-TGTAACAAGAAAAGCTTCTCTTTCCACCG-T
123 ATTTTCGTTTTTGCAAGAAAGGCTT-TCTTCCCACTGAT
* * * * * ** * *** **
169089 TTTTAATAGAA-TCAAAGTT--TGTCTCCTAAATAACACAAACATAAATAGTCA-TACTAATCCC
1 TTTT-GTA-AAGTCTAAGTTCATGCCT-C-AAATGAGACAAACATGGATTGT-AGTAAGGATCTT
* * * * ** * *
169150 CATTCATTTCAG-GATTAGGCACCATAAACA-TAGTCTTCTCATTAGGATACAA-GGTACTGATG
61 CATTCATTT-TGTAATTAGGCACGATAAACACT-TTCCCCTCATTAGGATA-AATGATATTGATG
* * * * * * ** *
169212 -CTTT-GGTTTCGTAAGAAAGTCTTTTTTTCCCACCAAC
123 ATTTTCGTTTTTGCAAGAAAGGC-TTTCTTCCCACTGAT
**
169249 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCCAGTAAGGATCTTCATTC
1 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTGTAGTAAGGATCTTCATTC
* * * * * * *
169314 ATTTTGTGATTAGGCACTATAAACACTTTCTCCTAATTAGGATAAATGAAATTGATG-CTTTGGT
66 ATTTTGTAATTAGGCACGATAAACACTTTCCCCTCATTAGGATAAATGATATTGATGATTTTCGT
** *
169378 TTTCACAAGAAAGGCTTTCTTCCCACCGAT
131 TTTTGCAAGAAAGGCTTTCTTCCCACTGAT
** * * * * *
169408 TTTTGTATTGTCTAAGTTCGTGCGTCAAATGAGACAAACATGGATTCTAGTAATGATTTTCATTC
1 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTGTAGTAAGGATCTTCATTC
* * * * * * *
169473 ATTTTGTAATTAGGCACTATTAGCACATTCACCTTATTAGGATAAATGGTATTGATGATTTTC-T
66 ATTTTGTAATTAGGCACGATAAACACTTTCCCCTCATTAGGATAAATGATATTGATGATTTTCGT
169537 TTT
131 TTT
169540 CCACGAAAAT
Statistics
Matches: 914, Mismatches: 235, Indels: 176
0.69 0.18 0.13
Matches are distributed among these distances:
151 5 0.01
152 17 0.02
153 75 0.08
154 6 0.01
155 5 0.01
156 2 0.00
157 37 0.04
158 193 0.21
159 512 0.56
160 58 0.06
161 4 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (160 bp):
TTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTGTAGTAAGGATCTTCATTC
ATTTTGTAATTAGGCACGATAAACACTTTCCCCTCATTAGGATAAATGATATTGATGATTTTCGT
TTTTGCAAGAAAGGCTTTCTTCCCACTGAT
Found at i:171491 original size:476 final size:474
Alignment explanation
Indices: 169364--174520 Score: 5419
Period size: 476 Copynumber: 10.9 Consensus size: 474
169354 GATAAATGAA
* * * ** * * *
169364 ATTGATGCTTTGGTTTTCACAAGAAAGGCTTTCTTCCCACCGATTTTTGTATTGTCTAAGTTCGT
1 ATTGATGCTTTGG-TATCGCAAGAAAGGCTTTCTTCCCACCAATTTTTACA-AGTGTAAGTTCAT
* * *
169429 GCGTCAAATGAGACAAACATGGATTCTAGTAATGATTTTCATTCATTTTGTAATTAGGCACTATT
64 GC-TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * * *
169494 AGCACATTCACCTTATTAGGATAAATGGTATTGATGATTTTCTTTTCCACGAAAATCTTTTCTTT
128 AACATAATCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTT
** * * * * * *
169559 ACCCTATTTTCCTTAAAATCAAAACTCGTCCCTTAAATATGACAAGCACCGATTCTTACAAGAGT
193 GGCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCATATGAGT
* ** * ** * * *
169624 CTCCACCCTTTACGAGATTGGGAACTAAGAACACATTCACC-TCATTAAGATACATAACAATGAT
258 CTCTATTCTTTTCGAGATTTAGAACTAAGAACACATTC-CCTTCATTAGGATACATGACATTGAT
* * * *
169688 GCTTTGGTGTCGCAAGAAATGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTCTAC-CTCTT
322 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT-TTCTCTCTT
* * ** * *
169752 AAATAAGGCAAACATGAACAGTCATAATAA-CCCCCTTTTCTTTCAAGATTA-GCAGCCATAATA
386 AAATAAGACAAACATGAATAGTCATACGAATCCCCATTTT-TTTCAGGATTAGGCA-CCATAA-A
* ** *
169815 -ATTGTCTTCT-A-TAAGGTTACACGAT
448 CATAGTCTTCTCAGT-AGGACACAAGAT
* * * * * **
169840 ATTGACT-CTTTGGTTTCACAAGAAAGGCTCTT-TTCCCTCCAATTTTTGAAAAGTCTAAACTCA
1 ATTGA-TGCTTTGGTATCGCAAGAAAGGCT-TTCTTCCCACCAATTTTT-ACAAGTGTAAGTTCA
* * ** *
169903 TGCCTCAAATGAGACAAACATGGATTCTAATAAGGATCTGT-ATTCATTTTGTGATTAGATACTT
63 TG-CTCAAATGAGACAAACATGGATTCTAGTAATGATCT-TCATTCATTTTGTGATTAGGCACTA
* * * * * * *
169967 TAAACACT-TTTTCCTCATTAGGATAAATGATATTGATGATTTTCGTTTGCACGGAAATCTTTTC
126 TAAACA-TAATCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAATCTTTTC
* * * * * * *
170031 TTTGACTTATTTTACATAAAATCAAAATTCATCCCTAAAATATGACAAGCATCGATTCTCGTATC
190 TTTGGCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCATATG
* * * * *
170096 AGTCTCTATTCTTTTCAAGATTTGGATCCAAGAACACATTCCCTCCATTAGGATACATGACATTG
255 AGTCTCTATTCTTTTCGAGATTTAGAACTAAGAACACATTCCCTTCATTAGGATACATGACATTG
* * * * *
170161 ATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCATCGTTCTCGACAGAAGT-AAAGTTTCTCTC
320 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAA-TCAAAGTTTCTCTC
* * * * *
170225 TTAATTAAGACAGACATTG-ATAGTTATACGAATCCCCATTTTTTTCAAGATTATGCACCATAAA
384 TTAAATAAGACAAACA-TGAATAGTCATACGAATCCCCATTTTTTTCAGGATTAGGCACCATAAA
* * *
170289 CATAGTATTCTCAGTAGGACAGATGAT
448 CATAGTCTTCTCAGTAGGACACAAGAT
* * *
170316 ACTGATGCTTTGGTATCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTGTAAGTTCGTA
1 ATTGATGCTTTGGTATCGCAAGAAAGGCTTTCTTCCCACCAATTTTTAC-AAGTGTAAGTTCAT-
* * * * *
170381 CCTCAAATAAGACAAAC----A-T-TAGCAATGATCTTTATTCATTTTGTGATTAGGCACTATTA
64 GCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * * *
170440 ACACAATCTCCTTATTAGGAT-AATAATACTGATGATTTTCTTCTCCATGAAAATGTTTTCTTTG
129 ACATAATCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTG
* * * * *
170504 AG-CTATTTTCCTGAAAATAAAAAATT-ATCCTTTGAATATGACAAGCATCGATTCTCATAAGAG
194 -GCCTATTTTCCTTAAAAT-CAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCATATGAG
* * * * ** *
170567 TCTC-ATTTCTTTTTGCGA-TTAGGAACTAAGAACACATTCCCTTTAGTAAAATATATGACATTG
257 TCTCTA-TTCTTTTCGAGATTTA-GAACTAAGAACACATTCCCTTCATTAGGATACATGACATTG
* ** * * * * *
170630 TTATTTTGGTGTCACAAGAAAAGTTTTTCTTTCCGCCGTTTTTGATAGAATCAAACTTTGTCTCT
320 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTCTCTCT
* * * ** *
170695 TAAATAACACAAACTTGAATAGTCATACTAAT-CCCATTCATTTCAGGATTAGGCACTATAAACA
385 TAAATAAGACAAACATGAATAGTCATACGAATCCCCATTTTTTTCAGGATTAGGCACCATAAACA
* * *
170759 TAGTCTTCTCATTAGGATACAAGGT
450 TAGTCTTCTCAGTAGGACACAAGAT
* * * * * * *
170784 ATTGATGCTTTGGTTTCGCAAGAACGGTTTTTTTCCCACCAACTTTTGTA-AAGTTTAAATTCTT
1 ATTGATGCTTTGGTATCGCAAGAAAGGCTTTCTTCCCACCAA-TTTT-TACAAGTGTAAGTTCAT
* * * *
170848 GCCTCAAATGACACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGCGATTAGACAC--TA
64 G-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * ** * * * *
170911 AA-ATACTTTCACAGCATTAGGATAAATAATATTGATGATTTT-TGTTTGCATGGAAATCTTTTT
128 AACATAATCTC-C-TTATTAGGATAAATGATATTGATGATTTTCT-TTTCCATGAAAATCTTTTC
* * * * * * *
170974 TTTGCCCCATTTTACTTAAAATAAAAATTCATCCCTTAAATATGACAAGTATCGATTCTCATTTC
190 TTTGGCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCATATG
* * *
171039 AGTCTCTTTTCTTTTCAAGATTTAGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTG
255 AGTCTCTATTCTTTTCGAGATTTAGAACTAAGAACACATTCCCTTCATTAGGATACATGACATTG
* * * * *
171104 ATGCTTTGGTGTCGCAACAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTTCCTCTCT
320 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTCTCTCT
* *
171169 TAATTAAGACAAACATGAATAGTCTTACGAATCCCCACTTTTTTTCAGGATTAGGCACCATAAAC
385 TAAATAAGACAAACATGAATAGTCATACGAATCCCCA-TTTTTTTCAGGATTAGGCACCATAAAC
* *
171234 ATAGTCTTCTCAGTAGGACAGACGAT
449 ATAGTCTTCTCAGTAGGACACAAGAT
* * * *
171260 ATTGATGCTTTAGTATCGCAAGAAAGGCTTTCTTCCCCCCAAATTTTACAAGCTGTAAGTTCTTG
1 ATTGATGCTTTGGTATCGCAAGAAAGGCTTTCTTCCCACCAATTTTTACAAG-TGTAAGTTCATG
* * * *
171325 CTCAAATAAGACAAACATAGATTCTAGTAATGATCTTTATTCATTTTATGATTAGGCACTATAAA
65 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * *
171390 CATAATCTCCTTACTCGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTCTCTTTGG
130 CATAATCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGG
* * ** * * *
171455 TCTATTTCCCTTAAAATCAAAATTCATCTATTAAATACGGCAAGCATCGATTCTCATAAGAGTCT
195 CCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCATATGAGTCT
** * * * * * *
171520 CCCTTTTTTTTGAGA-TTAGGAATTAAGAACACATTCCCTTTATTAGAATACATGACGTTG-TGG
260 CTATTCTTTTCGAGATTTA-GAACTAAGAACACATTCCCTTCATTAGGATACATGACATTGAT-G
* * * * * *
171583 TTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTGTTTTTTATAGAATCAAAGTTTGTCTCCTAA
323 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTCTCTCTTAA
* * * * * ** *
171648 ATAACATAAACTTAAATAGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAG
388 ATAAGACAAACATGAATAGTCATACGAATCCCCATTTTTTTCAGGATTAGGCACCATAAACATAG
* * *
171713 TCTTCTCACTAGGATACAAGGT
453 TCTTCTCAGTAGGACACAAGAT
* * * *
171735 ATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAACTTTTGTA-AAGTCTAAGTTCAT
1 ATTGATGCTTTGGTATCGCAAGAAAGGCTTTCTTCCCACCAA-TTTT-TACAAGTGTAAGTTCAT
* * *
171799 GCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATA
64 G-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* ** * * *
171864 AACACT-TTCTCCGCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATGGAAAT-TTCTT-
128 AACA-TAATCTCCTTATTAGGATAAATGATATTGATGATTTTCT-TTTCCATGAAAATCTT-TTC
** * * * * ** *
171925 TTTTCCCTTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTT
190 TTTGGCC-TATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCATAT
* * * *
171990 TAGTCTCTATTCTTTTGGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATT
254 GAGTCTCTATTCTTTTCGAGATTTAGAACTAAGAACACATTCCCTTCATTAGGATACATGACATT
* * * * *
172055 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTT
319 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTCTCTC
* *
172120 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTTCAGGATTAGGCACCATAA
384 TTAAATAAGACAAACATGAATAGTCATACGAATCCCCA--TTTTTTTCAGGATTAGGCACCATAA
* *
172185 ACATAGTCTTCTCAGTAGGACAGATGAT
447 ACATAGTCTTCTCAGTAGGACACAAGAT
** * *
172213 ATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTAAGTTCAT
1 ATTGATGCTTTGGTATCGCAAGAAAGGCTTTC-TTCCCACCAATTTTTAC-AAGTGTAAGTTCAT
* *
172277 GCTCAAATAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
64 GCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * * *
172342 ACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTT
129 ACATAATCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTG
* * * * * *
172407 GTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTC
194 GCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCATATGAGTC
** * * *
172472 TCCCTT-TTTTCTGAGA-TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTT
259 TCTATTCTTTTC-GAGATTTA-GAACTAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * *
172535 GTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTA
322 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTCTCTCTTA
* * * * ** *
172600 AATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATA
387 AATAAGACAAACATGAATAGTCATACGAATCCCCATTTTTTTCAGGATTAGGCACCATAAACATA
* * *
172665 GTCTTCTCACTAGGATACAAGGT
452 GTCTTCTCAGTAGGACACAAGAT
* * * * *
172688 ATTGACGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAACTTTTGTA-AAGTCTAAGTTCAT
1 ATTGATGCTTTGGTATCGCAAGAAAGGCTTTCTTCCCACCAA-TTTT-TACAAGTGTAAGTTCAT
* * *
172752 GCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATA
64 G-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* ** * * * * *
172817 AACACT-TTCTCCGCATTAGGATAAATGATATTGATGATTTCCGTTTGCATGGAAAT-TTCTTTT
128 AACA-TAATCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAATCTT-TTCT
* * * * * ** * *
172880 TTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTTA
191 TTGGCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCATATGA
* * *
172945 GTCTCTATTCTTTTCGAGATTTAGAACCAAGAACACATTCCATTCATTAGGATACATTACATTGA
256 GTCTCTATTCTTTTCGAGATTTAGAACTAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * *
173010 TGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTTTT
321 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTCTCTCTT
* * * *
173075 AATTAAGACAAACATCAATAGTCTTATGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAACA
386 AAATAAGACAAACATGAATAGTCATACGAATCCCCA-TTTTTTTCAGGATTAGGCACCATAAACA
* *
173140 TAGTCTTCTCAGTAGGACAGAGGAT
450 TAGTCTTCTCAGTAGGACACAAGAT
* ** * *
173165 ATTCATGCTTTAATATTGCAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTAAGTTCAT
1 ATTGATGCTTTGGTATCGCAAGAAAGGCTTTC-TTCCCACCAATTTTTAC-AAGTGTAAGTTCAT
* * *
173229 GCTCAAATAAGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
64 GCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * *
173294 ACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTG
129 ACATAATCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTG
** * * * * * *
173359 GTTTATTTCCCGTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTC
194 GCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCATATGAGT-
* * * * *
173424 CCCT-TT-TTTTTGAGA-TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTT
258 CTCTATTCTTTTCGAGATTTA-GAACTAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * *
173486 GTTTTGGTGTCACAAGAAAAGCTTTTCTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
322 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTCTCTCTTA
* * * * ** *
173551 AATAACACAAACTTAAATAGTCATACAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATA
387 AATAAGACAAACATGAATAGTCATACGAATCCCCATTTTTTTCAGGATTAGGCACCATAAACATA
* * *
173616 GTCTTCTCACTAGGATACAAGGT
452 GTCTTCTCAGTAGGACACAAGAT
* * *
173639 ATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAACTTTTGTA-AAGTCTAAGTTCAT
1 ATTGATGCTTTGGTATCGCAAGAAAGGCTTTCTTCCCACCAA-TTTT-TACAAGTGTAAGTTCAT
* * *
173703 GCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATA
64 G-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * * *
173768 AACACT-TTCT-CTGCATTAGGATAAATGATATTGCTGATTTT-TGCTTGCATGGAAAT-TTCTT
128 AACA-TAATCTCCT-TATTAGGATAAATGATATTGATGATTTTCT-TTTCCATGAAAATCTT-TT
* ** * * * * ** *
173829 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTT
189 CTTTGGCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCATAT
* * * *
173894 TAATCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATT
254 GAGTCTCTATTCTTTTCGAGATTTAGAACTAAGAACACATTCCCTTCATTAGGATACATGACATT
* * * *
173959 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
319 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTCTCTC
* * *
174024 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTTCAGAATTAGGCACCATAA
384 TTAAATAAGACAAACATGAATAGTCATACGAATCCCCA--TTTTTTTCAGGATTAGGCACCATAA
* *
174089 ACATAGTCTTCTCAGTAGGACAGATGAT
447 ACATAGTCTTCTCAGTAGGACACAAGAT
** * *
174117 ATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTAAGTTCAT
1 ATTGATGCTTTGGTATCGCAAGAAAGGCTTTC-TTCCCACCAATTTTTAC-AAGTGTAAGTTCAT
* *
174181 GCTCAAATAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
64 GCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * * *
174246 ACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTTCGTGAAAATCTTTTCTTTG
129 ACATAATCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTG
* * * * *
174311 GTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATA--AGTC
194 GCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCATATGAGT-
* * * *
174374 CCCT-TT-TTTT-GAGA-TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTT
258 CTCTATTCTTTTCGAGATTTA-GAACTAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * *
174435 GTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTTATAGAATCAAAGTTTGTTTCTTA
322 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTCTCTCTTA
* * *
174500 AATAACACAAACTTAAATAGT
387 AATAAGACAAACATGAATAGT
174521 TTGGTTTCGC
Statistics
Matches: 3829, Mismatches: 740, Indels: 227
0.80 0.15 0.05
Matches are distributed among these distances:
468 114 0.03
469 203 0.05
470 54 0.01
471 6 0.00
472 8 0.00
473 138 0.04
474 352 0.09
475 889 0.23
476 1295 0.34
477 560 0.15
478 200 0.05
479 10 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (474 bp):
ATTGATGCTTTGGTATCGCAAGAAAGGCTTTCTTCCCACCAATTTTTACAAGTGTAAGTTCATGC
TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
ATAATCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGGC
CTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCATATGAGTCTC
TATTCTTTTCGAGATTTAGAACTAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTCTCTCTTAAATA
AGACAAACATGAATAGTCATACGAATCCCCATTTTTTTCAGGATTAGGCACCATAAACATAGTCT
TCTCAGTAGGACACAAGAT
Found at i:172390 original size:953 final size:951
Alignment explanation
Indices: 169380--174520 Score: 7744
Period size: 953 Copynumber: 5.4 Consensus size: 951
169370 GCTTTGGTTT
* ** *** * * *
169380 TCACAAGAAAGGCTTTC-TTCCCACCGATTTTTGTATTGTCTAAGTTCGTGCGTCAAATGAGACA
1 TCACAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTAAGTTCATGC-TCAAATAAGACA
* * * * * * *
169444 AACATGGATTCTAGTAATGATTTTCATTCATTTTGTAATTAGGCACTATTAGCACATTCACCTTA
64 AACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTA
* * * ** *** *
169509 TTAGGATAAATGGTATTGATGATTTTCTTTTCCACGAAAATCTTTTCTTTACCCTATTTTCCTTA
129 CTAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTA
* * * * * * * * ** **
169574 AAATCAAAACTCGTCCCTTAAATATGACAAGCACCGATTCTTACAAGAGTCTCCAC-CCTTTACG
194 AAATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCC-CTTTTTTTTG
* * * * * * *
169638 AGATTGGGAACTAAGAACACATTCACC-TCATTA-AGATACATAACAATGATGCTTTGGTGTCGC
258 AGATTAGGAATTAAGAACACATTC-CCTTCATTAGA-ATACATGACATTGTTGTTTTGGTGTCAC
* * * * ** ** *
169701 AAGAAATGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTCTACCTCTTAAATAAGGCAAACA
321 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAACACAAACT
* * * * * *
169766 TGAACAGTCATA-ATAACCCCCTTTTC-TTTCAAGATTA-GCAGCCATAATA-ATTGTCTTCT-A
386 TAAATAGTCATACA-AATCCCC-ATTCATTTCAGGATTAGGCA-CCATAA-ACATAGTCTTCTCA
* * * * * * * * *
169826 -TAAGGTTACACGATATTGACTCTTTGGTTTCACAAGAAAGGCTCTTTTCCCTCCAATTTTTGAA
447 CT-AGGATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAACTTTTGTA
** * *
169890 AAGTCTAAACTCATGCCTCAAATGAGACAAACATGGATTCTAATAAGGATCTGT-ATTCATTTTG
511 AAGTCTAAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCT-TCATTCATTTTG
* * * * * *
169954 TGATTAGATACTTTAAACACTTTTTCCTCATTAGGATAAATGATATTGATGATTTTCGTTTGCAC
575 TGATTAGACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGTTTGCAT
** * * * *
170019 GGAAATCTT-TTCTTTGACTTATTTTACAT-AAAATCAAAATTCATCCCTAAAATATGACAAGCA
640 GGAAAT-TTCTT-TTTTCCCTATTTTTC-TCAAAATCAAAATTCATCCCTTAAATATAACAAGCA
* * * * * * *
170082 TCGATTCTCGTATCAGTCTCTATTCTTTTCAAGATTTGGATCCAAGAACACATTCCCTCCATTAG
702 TCAATTCTTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAG
* * * *
170147 GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCATCGTTCTCGACAGAAG
767 GATACATGACATTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAA-
* * *
170212 T-AAAGTTTCTCTCTTAATTAAGACAGACATTG-ATAGT-TATACGAATCCCCA-TTTTTTTCAA
831 TCAAAGTTCCTCTCTTAATTAAGACAAACA-TGAATAGTCT-TACGAATCCCCATTTTTTTTCAG
* * * **
170273 GATTATGCACCATAAACATAGTATTCTCAGTAGGACAGATGATACTGATGCTTTGGTA
894 GATTAGGCACCATAAACATAGTCTTCTCAGTAGGACAGATGATATTGATGCTTTAATA
* * * * *
170331 TCGCAAGAAAGGCTTTC-TTCCCACCAATTTTTGCAAAGTGTAAGTTCGTACCTCAAATAAGACA
1 TCACAAGAAAGGCTTTCTTTCCC-CCAATTTTTACAAACTGTAAGTTCAT-GCTCAAATAAGACA
* * *
170395 AAC----A-T-TAGCAATGATCTTTATTCATTTTGTGATTAGGCACTATTAACACAATCTCCTTA
64 AACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTA
* * * * * * * * *
170454 TTAGGA-TAATAATACTGATGATTTTCTTCTCCATGAAAATGTTTTCTTTGAG-CTATTTTCCTG
129 CTAGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTG-GTCTATTTCCCTT
* * * * * *
170517 AAAATAAAAAATT-ATCCTTTGAATATGACAAGCATCGATTCTCATAAGAGTCT-CATTTCTTTT
193 AAAAT-CAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTT-TTTT
* * * * * * *
170580 TGCGATTAGGAACTAAGAACACATTCCCTTTAGTAAAATATATGACATTGTTATTTTGGTGTCAC
256 TGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCAC
* * *
170645 AAGAAAAGTTTTTCTTTCCGCCGTTTTTGATAGAATCAAACTTTGTCTCTTAAATAACACAAACT
321 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAACACAAACT
* * * *
170710 TGAATAGTCATACTAAT-CCCATTCATTTCAGGATTAGGCACTATAAACATAGTCTTCTCATTAG
386 TAAATAGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCACTAG
* * * *
170774 GATACAAGGTATTGATGCTTTGGTTTCGCAAGAACGGTTTTTTTCCCACCAACTTTTGTAAAGTT
451 GATACAAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTC
* * * * *
170839 TAAATTCTTGCCTCAAATGACACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGCGATTA
516 TAAGTTCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTA
* * * *
170904 GACACTA-AAATACTTTCACAGCATTAGGATAAATAATATTGATGATTTTTGTTTGCATGGAAAT
581 GACACTATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGTTTGCATGGAAAT
* * * * * * *
170968 CTT-TTTTTTGCCCCATTTTACTTAAAATAAAAATTCATCCCTTAAATATGACAAGTATCGATTC
646 -TTCTTTTTT-CCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTC
** * * * *
171032 TCATTTCAGTCTCTTTTCTTTTCAAGATTTAGAACCAAGAACACATTCCCTTCATTAGGATACAT
709 TTGTTTTAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACAT
* * *
171097 GACATTGATGCTTTGGTGTCGCAACAAAAGGTTTTCTTTCCACCATTTTCGATAGAATCAAAGTT
774 GACATTGATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTT
*
171162 CCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCACTTTTTTTCAGGATTAGGCAC
839 CCTCTCTTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCAC
* *
171227 CATAAACATAGTCTTCTCAGTAGGACAGACGATATTGATGCTTTAGTA
904 CATAAACATAGTCTTCTCAGTAGGACAGATGATATTGATGCTTTAATA
* * * * *
171275 TCGCAAGAAAGGCTTTCTTCCCCCCAAATTTTACAAGCTGTAAGTTCTTGCTCAAATAAGACAAA
1 TCACAAGAAAGGCTTTCTTTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAA
* * *
171340 CATAGATTCTAGTAATGATCTTTATTCATTTTATGATTAGGCACTATAAACATAATCTCCTTACT
66 CATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
* *
171405 CGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTCTCTTTGGTCTATTTCCCTTAAA
131 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
*
171470 ATCAAAATTCATCTATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
196 ATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
* * *
171535 TTAGGAATTAAGAACACATTCCCTTTATTAGAATACATGACGTTGTGGTTTTGGTGTCACAAGAA
261 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
* * * *
171600 AAGCTTTTCTTTCCACTGTTTTTTATAGAATCAAAGTTTGTCTCCTAAATAACATAAACTTAAAT
326 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
*
171665 AGTCATACAAATCCCCATTCATTTCAGGATTACGCACCATAAACATAGTCTTCTCACTAGGATAC
391 AGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCACTAGGATAC
171730 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGT
456 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGT
171795 TCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
521 TCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
*
171860 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCTT
586 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGTTTGCATGGAAATTTCTT
171925 TTTTCCCTTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTT
651 TTTTCCC-TATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTT
*
171990 TAGTCTCTATTCTTTTGGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATT
715 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATT
*
172055 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTT
780 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
172120 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTTCAGGATTAGGCACCATAA
845 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCA-TTTTTTTTCAGGATTAGGCACCATAA
172185 ACATAGTCTTCTCAGTAGGACAGATGATATTGATGCTTTAATA
909 ACATAGTCTTCTCAGTAGGACAGATGATATTGATGCTTTAATA
172228 TCACAAGAAAGGCTTTCTTTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAA
1 TCACAAGAAAGGCTTTCTTTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAA
172293 CATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
66 CATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
*
172358 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTTGTCTATTTCCCTTAAA
131 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
*
172423 ATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTCTGAGA
196 ATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
172488 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
261 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
*
172553 AAGCTTTTCTTTCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
326 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
*
172618 AGTCATACAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATAGTCTTCTCACTAGGATAC
391 AGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCACTAGGATAC
*
172683 AAGGTATTGACGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGT
456 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGT
172748 TCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
521 TCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
**
172813 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTCCGTTTGCATGGAAATTTCTT
586 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGTTTGCATGGAAATTTCTT
172878 TTTTGCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTT
651 TTTT-CCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTT
* * *
172943 TAGTCTCTATTCTTTTCGAGATTTAGAACCAAGAACACATTCCATTCATTAGGATACATTACATT
715 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATT
*
173008 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTT
780 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
* *
173073 TTAATTAAGACAAACATCAATAGTCTTATGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
845 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAA
* *
173138 CATAGTCTTCTCAGTAGGACAGAGGATATTCATGCTTTAATA
910 CATAGTCTTCTCAGTAGGACAGATGATATTGATGCTTTAATA
**
173180 TTGCAAGAAAGGCTTTCTTTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAA
1 TCACAAGAAAGGCTTTCTTTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAA
*
173245 CCTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
66 CATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
* *
173310 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTTTATTTCCCGTAAA
131 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
173375 ATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTC-CCCTTTTTTTTGAGA
196 ATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
173439 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
261 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
*
173504 AAGCTTTTCTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
326 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
*
173569 AGTCATACAAATCCCCATTCATTTCGGGATTAGGCACCATAAACATAGTCTTCTCACTAGGATAC
391 AGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCACTAGGATAC
*
173634 AAGGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGT
456 AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGT
173699 TCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
521 TCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
* * *
173764 TATAAACACTTTCTCTGCATTAGGATAAATGATATTGCTGATTTTTGCTTGCATGGAAATTTCTT
586 TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGTTTGCATGGAAATTTCTT
173829 TTTTCCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTT
651 TTTT-CCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTT
*
173894 TAATCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATT
715 TAGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATT
173959 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
780 GATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTC
*
174024 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTTCAGAATTAGGCACCATAA
845 TTAATTAAGACAAACATGAATAGTCTTACGAATCCCCA-TTTTTTTTCAGGATTAGGCACCATAA
174089 ACATAGTCTTCTCAGTAGGACAGATGATATTGATGCTTTAATA
909 ACATAGTCTTCTCAGTAGGACAGATGATATTGATGCTTTAATA
174132 TCACAAGAAAGGCTTTCTTTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAA
1 TCACAAGAAAGGCTTTCTTTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAA
174197 CATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
66 CATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
*
174262 AGGACAAATGATATTGATGATTTTCTTTTTCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
131 AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
174327 ATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCAT-A-AGTC-CCC-TTTTTTTGAGA
196 ATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
174388 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
261 TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
* *
174453 AAGCTTTTCTTTCCACCGTTTTTTATAGAATCAAAGTTTGTTTCTTAAATAACACAAACTTAAAT
326 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
174518 AGT
391 AGT
174521 TTGGTTTCGC
Statistics
Matches: 3877, Mismatches: 275, Indels: 78
0.92 0.07 0.02
Matches are distributed among these distances:
942 11 0.00
943 301 0.08
944 424 0.11
945 64 0.02
946 1 0.00
947 2 0.00
948 1 0.00
949 202 0.05
950 227 0.06
951 859 0.22
952 868 0.22
953 914 0.24
954 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (951 bp):
TCACAAGAAAGGCTTTCTTTCCCCCAATTTTTACAAACTGTAAGTTCATGCTCAAATAAGACAAA
CATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTACT
AGGACAAATGATATTGATGATTTTCTTTTCCGTGAAAATCTTTTCTTTGGTCTATTTCCCTTAAA
ATCAAAATTCATCCATTAAATACGGCAAGCATCGATTCTCATAAGAGTCTCCCTTTTTTTTGAGA
TTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTAAAT
AGTCATACAAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCACTAGGATAC
AAGGTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGT
TCATGCCTCAAATGAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACAC
TATAAACACTTTCTCCGCATTAGGATAAATGATATTGATGATTTTTGTTTGCATGGAAATTTCTT
TTTTCCCTATTTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTT
AGTCTCTATTCTTTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTG
ATGCTTTGGTTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCT
TAATTAAGACAAACATGAATAGTCTTACGAATCCCCATTTTTTTTCAGGATTAGGCACCATAAAC
ATAGTCTTCTCAGTAGGACAGATGATATTGATGCTTTAATA
Found at i:175430 original size:475 final size:474
Alignment explanation
Indices: 174520--176340 Score: 2003
Period size: 475 Copynumber: 3.8 Consensus size: 474
174510 ACTTAAATAG
* * * * *
174520 TTTGGTTTCGCACGAAAGGCTTTTTTCCCCCAACTTTTGTAATGTCTAAGTTCATGCCTCAAATG
1 TTTGGTATCGCAAGAAAGGCTTTTTTCCCCCAACTTTTGCAAAGTCTAAGTTCATGCCTCAAATA
* * *
174585 AGACAATCAT-GTATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTC
66 AGACAAACATAG-ATTCCAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACATT-
* *
174649 TCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCTTTTTTCCCCTATTT
129 TCCTCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCTTCTTTCCCCTATTT
** ** * *
174714 TTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTTAGTCTCTATTCT
194 CCCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTCATTATAGTCTCCATTCT
* * * * * * *
174779 TTCCAAAATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTT
259 TTTCGAGATTAGGAACTAAGAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGT
* * * * * * *
174844 CGCAAAAAAAGGTTTTCTTTCCACTGTTTTCGATAGAGTCAACA-TTCCTTTCTTAATTAAGACA
324 CACAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAA-AGTTCCTCTCTTAAATAAGACA
* * * * * *
174908 AACATGAATAGTCATA-TGAATCCCCATTTTTTTTAGGATTCGGCACCAAAAACATAATCTTCTC
388 AACATAAATAGTCATACTGAATCCTCATTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
*
174972 TGTAGGACAAACGATATTGATGC
453 AGTAGGACAAA-GATATTGATGC
* * * *
174995 TTTGGCATCGCAAGAAAGGCTTTTTTCCCCCAATTTTTGCAAAGTCTAAGTTCGTGCCTTAAATA
1 TTTGGTATCGCAAGAAAGGCTTTTTTCCCCCAACTTTTGCAAAGTCTAAGTTCATGCCTCAAATA
* * * * * *
175060 AGACAAACATATATTCCAATAATGATCTTCATTCATTTCGTGAGTAGACATTATAAACACAATTT
66 AGACAAACATAGATTCCAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACAC-ATTT
* * * ** *
175125 CCTCATTGGGATAAATGATATTGATGATTTTCT-TTTCCATGGAAATCTT-TTCTTTGGCCTGTT
130 CCTCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATGGAAAT-TTCTTCTTTCCCCTATT
* * * * * * * * *
175188 ACCCTCAAAATCAAAAATCATCCTTTAAATATGATAAGCATCTATTCTCATAAGAGTCTCCCTTC
193 TCCCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTCATTATAGTCTCCATTC
* * * *
175253 TTTTTGAGATTAGGAACTAAGAACACATTCCCTTCATTAGAATACATGGCATTGTTGTTTTGGTG
258 TTTTCGAGATTAGGAACTAAGAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTG
* * ** * *
175318 TCACAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAAACA
323 TCACAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAAATAAGACA
* * ** *
175383 AACTTAAATAGTCATACTG-ATCCTCGTTCATTTCGGGATTAGGCACCATAAACATAGTCTTCTC
388 AACATAAATAGTCATACTGAATCCTCATTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* * *
175447 ACTAGGATACAAGGTATTGATGC
453 AGTAGGACA-AAGATATTGATGC
* *
175470 TTTGGTTTCGC----AAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
1 TTTGGTATCGCAAGAAAGGCTTTTTTCCC-CCAACTTTTGCAAAGTCTAAGTTCATGCCTCAAAT
* * *
175531 GAGACAATCATGGATTCTC-GTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACAC-TT
65 AAGACAAACATAGATTC-CAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACATT
* *
175594 TCTCTGCATTAGGATAAATGATATTGCTGATTTTTGCTTGCATGGAAATTTCTTTTTTCCCCTAT
129 TC-CT-CATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCTTCTTTCCCCTAT
** ** * * *
175659 TTTTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTTAATCTCTATT
192 TTCCCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTCATTATAGTCTCCATT
* *
175724 CTTTTCGAGATTTGGAAGC-AAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
257 CTTTTCGAGATTAGGAA-CTAAGAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGG
* * * *
175788 TTTCGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGA
321 TGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAAATAAGA
* * * *
175853 CAAACATGAATAGTCTTAC-GAATCCCCATTTTTTTTTTCAGAATTAGGCACCATAAACATAGTC
386 CAAACATAAATAGTCATACTGAATCCTCA---TTTTTTTCAGGATTAGGCACCATAAACATAGTC
*
175917 TTCTCAGTAGGACAGATGATATTGATGC
448 TTCTCAGTAGGACA-AAGATATTGATGC
** * * * * *
175945 TTTAATATCACAAGAAAGGCTTTCTTTCCCCCAATTTTTACAAACTGTAAGTTCATG-CTCAAAT
1 TTTGGTATCGCAAGAAAGGCTTT-TTTCCCCCAACTTTTGCAAAGTCTAAGTTCATGCCTCAAAT
* *
176009 AAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTA-AGCACTATAAACACAAT
65 AAGACAAACATAGATTCCAGTAAGGATCTTCATTCATTTTGTGATTAGA-CACTATAAACAC-AT
* * * * * * * * ***
176073 CTCCTTACTAGGACAAATGATATTGATGATTTTCT-TTTTCGTGAAAATCTT-TTCTTTGGTCTA
128 TTCCTCATTAGGATAAATGATATTGATGATTTT-TGCTTGCATGGAAAT-TTCTTCTTTCCCCTA
** ** *** * *
176136 TTTCCCTTGAAATCAAAATTCATCCAATAAATACGGCAAGCATCGATTCTCA-TA-AGTC-CCCT
191 TTTCCCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTCATTATAGTCTCCAT
* * * *
176198 T-TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGG
256 TCTTTTCGAGATTAGGAACTAAGAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGG
* ** *
176262 TGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTCTATAGAATCAAAGTTTGTCTCTTAAATAACA
321 TGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAAATAAGA
*
176327 CAAACTTAAATAGT
386 CAAACATAAATAGT
176341 TTGGTTTCGC
Statistics
Matches: 1108, Mismatches: 208, Indels: 61
0.80 0.15 0.04
Matches are distributed among these distances:
470 4 0.00
471 20 0.02
472 308 0.28
473 2 0.00
474 126 0.11
475 449 0.41
476 12 0.01
477 2 0.00
478 141 0.13
479 35 0.03
480 9 0.01
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (474 bp):
TTTGGTATCGCAAGAAAGGCTTTTTTCCCCCAACTTTTGCAAAGTCTAAGTTCATGCCTCAAATA
AGACAAACATAGATTCCAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTTC
CTCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCTTCTTTCCCCTATTTCC
CTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTCATTATAGTCTCCATTCTTT
TCGAGATTAGGAACTAAGAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCA
CAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAAATAAGACAAAC
ATAAATAGTCATACTGAATCCTCATTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGT
AGGACAAAGATATTGATGC
Found at i:176730 original size:874 final size:875
Alignment explanation
Indices: 173647--175394 Score: 2826
Period size: 872 Copynumber: 2.0 Consensus size: 875
173637 GTATTGATGC
*
173647 TTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
1 TTTGGTTTCGCACGAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
173712 GAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTC
66 GAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTC
* *
173777 TCTGCATTAGGATAAATGATATTGCTGATTTTTGCTTGCATGGAAATTTCTTTTTTCCCCTATTT
131 TCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCTTTTTTCCCCTATTT
173842 TTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTTAATCTCTATTCT
196 TTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTTAATCTCTATTCT
* * *
173907 TTTCGAGATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTT
261 TTCCAAAATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTT
*
173972 CGCAAGAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAA
326 CGCAAAAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAA
* * *
174037 ACATGAATAGTCTTACGAATCCCCATTTTTTTTTCAGAATTAGGCACCATAAACATAGTCTTCTC
391 ACATGAATAGTCATACGAATCCCCA-TTTTTTTT-AGAATTAGGCACCAAAAACATAATCTTCTC
* * *
174102 AGTAGGACAGATGATATTGATGCTTTAATATCACAAGAAAGGCTTTCTTTCCCCCAATTTTTACA
454 AGTAGGACAAACGATATTGATGCTTTAACATCACAAGAAAGGCTTT-TTTCCCCCAATTTTTACA
* * * *
174167 AACTGTAAGTTCATG-CTCAAATAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGT
518 AACTCTAAGTTCATGCCTCAAATAAGACAAACATAGATTCCAATAATGATCTTCATTCATTTCGT
* * * * *
174231 GATTAGGCACTATAAACACAATCTCCTTACTAGGACAAATGATATTGATGATTTTCTTTTTCGTG
583 GAGTAGACACTATAAACACAATCTCCTCACTAGGACAAATGATATTGATGATTTTCTTTTCCATG
* * * * * *
174296 AAAATCTTTTCTTTGGTCTATTTCCCTTAAAATCAAAATTCATCCATTAAATACGGCAAGCATCG
648 AAAATCTTTTCTTTGGCCTATTACCCTCAAAATCAAAAATCATCCAATAAATACGACAAGCATCG
*
174361 ATTCTCAT-A-AGTC-CCCTT-TTTTTGAGATTAGGAATTAAGAACACATTCCCTTCATTAGAAT
713 ATTCTCATAAGAGTCTCCCTTCTTTTTGAGATTAGGAACTAAGAACACATTCCCTTCATTAGAAT
*
174422 ACATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTTATAGAATCAA
778 ACATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* *
174487 AGTTTGTTTCTTAAATAACACAAACTTAAATAG
843 AGTTTGTCTCCTAAATAACACAAACTTAAATAG
*
174520 TTTGGTTTCGCACGAAAGGCTTTTTTCCC-CCAACTTTTGTAATGTCTAAGTTCATGCCTCAAAT
1 TTTGGTTTCGCACGAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
*
174584 GAGACAATCATGTATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTC
66 GAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTC
174649 TCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCTTTTTTCCCCTATTT
131 TCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCTTTTTTCCCCTATTT
*
174714 TTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTTAGTCTCTATTCT
196 TTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTTAATCTCTATTCT
174779 TTCCAAAATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTT
261 TTCCAAAATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTT
* * *
174844 CGCAAAAAAAGGTTTTCTTTCCACTGTTTTCGATAGAGTCAACA-TTCCTTTCTTAATTAAGACA
326 CGCAAAAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAA-AGTTCCTCTCTTAATTAAGACA
* * * *
174908 AACATGAATAGTCATATGAATCCCCATTTTTTTTAGGATTCGGCACCAAAAACATAATCTTCTCT
390 AACATGAATAGTCATACGAATCCCCATTTTTTTTAGAATTAGGCACCAAAAACATAATCTTCTCA
** * *
174973 GTAGGACAAACGATATTGATGCTTTGGCATCGCAAGAAAGGCTTTTTTCCCCCAATTTTTGCAAA
455 GTAGGACAAACGATATTGATGCTTTAACATCACAAGAAAGGCTTTTTTCCCCCAATTTTTACAAA
* * * *
175038 GTCTAAGTTCGTGCCTTAAATAAGACAAACATATATTCCAATAATGATCTTCATTCATTTCGTGA
520 CTCTAAGTTCATGCCTCAAATAAGACAAACATAGATTCCAATAATGATCTTCATTCATTTCGTGA
* * * * * *
175103 GTAGACATTATAAACACAATTTCCTCATTGGGATAAATGATATTGATGATTTTCTTTTCCATGGA
585 GTAGACACTATAAACACAATCTCCTCACTAGGACAAATGATATTGATGATTTTCTTTTCCATGAA
* ** * * *
175168 AATCTTTTCTTTGGCCTGTTACCCTCAAAATCAAAAATCATCCTTTAAATATGATAAGCATCTAT
650 AATCTTTTCTTTGGCCTATTACCCTCAAAATCAAAAATCATCCAATAAATACGACAAGCATCGAT
175233 TCTCATAAGAGTCTCCCTTCTTTTTGAGATTAGGAACTAAGAACACATTCCCTTCATTAGAATAC
715 TCTCATAAGAGTCTCCCTTCTTTTTGAGATTAGGAACTAAGAACACATTCCCTTCATTAGAATAC
* *
175298 ATGGCATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAG
780 ATGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
*
175363 TTTGTCTCCTAAATAAAACAAACTTAAATAG
845 TTTGTCTCCTAAATAACACAAACTTAAATAG
175394 T
1 T
175395 CATACTGATC
Statistics
Matches: 806, Mismatches: 63, Indels: 11
0.92 0.07 0.01
Matches are distributed among these distances:
869 29 0.04
870 226 0.28
871 9 0.01
872 373 0.46
873 34 0.04
874 135 0.17
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (875 bp):
TTTGGTTTCGCACGAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
GAGACAATCATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTC
TCCGCATTAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAATTTCTTTTTTCCCCTATTT
TTCTCAAAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTTAATCTCTATTCT
TTCCAAAATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTT
CGCAAAAAAAGGTTTTCTTTCCACCGTTTTCGATAGAATCAAAGTTCCTCTCTTAATTAAGACAA
ACATGAATAGTCATACGAATCCCCATTTTTTTTAGAATTAGGCACCAAAAACATAATCTTCTCAG
TAGGACAAACGATATTGATGCTTTAACATCACAAGAAAGGCTTTTTTCCCCCAATTTTTACAAAC
TCTAAGTTCATGCCTCAAATAAGACAAACATAGATTCCAATAATGATCTTCATTCATTTCGTGAG
TAGACACTATAAACACAATCTCCTCACTAGGACAAATGATATTGATGATTTTCTTTTCCATGAAA
ATCTTTTCTTTGGCCTATTACCCTCAAAATCAAAAATCATCCAATAAATACGACAAGCATCGATT
CTCATAAGAGTCTCCCTTCTTTTTGAGATTAGGAACTAAGAACACATTCCCTTCATTAGAATACA
TGACATTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
TTGTCTCCTAAATAACACAAACTTAAATAG
Found at i:177295 original size:475 final size:476
Alignment explanation
Indices: 176347--178396 Score: 2230
Period size: 475 Copynumber: 4.3 Consensus size: 476
176337 TAGTTTGGTT
* * * *
176347 TCGCACGAAAGGCTTTTTTCCCTCCAACTTTTGTAATGTCTAAGTTCATGCCTCAAATGAGACAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAA
* * * *
176412 TCATGTATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCAT
66 ACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACATT-TCCTCAT
** * * *
176477 TAGGATAAATGATATTGATGATTTTTGCTTGCATGGAAAT-TTCTTTTTTCCCCTATTTTTCTCA
130 TAGGATAAATGATATTGATGATTTTTATTTGCATGGAAATCTT-TTCTTTGCCCTATTTTCCTCA
* * * * ** ***
176541 AAATCAAAATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTTAGTCTCTATTCTTTCCAA
194 AAATCAAAAATCATCCTTTAAATATGACAAGCATCTATTCTCATAAGAGTCTCTATTCTTTCCAA
* * * * *
176606 AATTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAA
259 GATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCAAG
* * * * * * * *
176671 AAAAGGTTTTCTTTCCACTGTTTTCGATAGAGTCAACA-TTCCTTTCTTAATTAAGACAAACATG
324 AAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAA-AGTTTCTCTCTTAAATAAGACAAACATG
** * * * *
176735 AATAGTCATA-TGAATCCCCATTTTTTTTAGGATTCGGCACCAAAAACATAATCTTCTC-TGTAG
388 AATAGTCATACTGAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT-TAG
*
176798 GACA-AACGATATTGATGCTTTGGCA
452 GACACAA-GATATTGACGCTTTGGCA
* * * *
176823 TCGCAAGAAAGGCTTTTTTCCC-CCAATTTTTGCAAAGTCTAAGTTCGTGCCTTAAATAAGACAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAA
** * * * * * *
176887 ACATATATTCCAATAATGATCTTCATTCATTTCGTGAGTAGACATTATAAACACAATTTCCTCAT
66 ACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACAC-ATTTCCTCAT
* * * * **
176952 TGGGATAAATGATATTGATGATTTTCT-TTTCCATGGAAATCTTTTCTTTGGCCTGTTACCCTCA
130 TAGGATAAATGATATTGATGATTTT-TATTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTCA
* ** ***
177016 AAATCAAAAATCATCCTTTAAATATGATAAGCATCTATTCTCATAAGAGTCTCCCTTCTTTTTGA
194 AAATCAAAAATCATCCTTTAAATATGACAAGCATCTATTCTCATAAGAGTCTCTATTCTTTCCAA
* * * *
177081 GATTAGGAACTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAG
259 GATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCAAG
* * * * *
177146 AAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAACACAAACTTAA
324 AAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTCTCTCTTAAATAAGACAAACATGA
* * *
177211 ATAGTCATACTG-ATCCTCGTTCATTTCGGGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
389 ATAGTCATACTGAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * **
177275 TACAAGGTATTAACGCTTTGGTT
454 CACAAGATATTGACGCTTTGGCA
** * * * *
177298 TAACAAGAAAGGCTTTTTTCCCACTAACTTTTGTAATGTATAAGTTCATGCCTCAAATGAGACAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAA
* * *
177363 ACATGGATTCTAGTAAGGATCTTCATTCGTTTTGTGATTAGATACTACAAACAC-TTTCTCTGCA
66 ACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTTC-CT-CA
* *
177427 TTAGGATAAATGATATTGATGATTTTTATTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTA
129 TTAGGATAAATGATATTGATGATTTTTATTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTCA
* * * * *** *
177492 AAATCAAAATTCATCCTTTAAATATGACACGCAT-TGATTTTCGTTTCAGTCTCTAGTCTTTCCA
194 AAATCAAAAATCATCCTTTAAATATGACAAGCATCT-ATTCTCATAAGAGTCTCTATTCTTTCCA
* * * *
177556 AGATTTGGAACCAAGAACACATTCCTTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAA
258 AGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCAA
* * * * *
177621 GAAAAGGTTTTTTTTC-ACCGTTTTTGACAGAATTAAAGTTTCTCTCTTAATTAAGACAAACATG
323 GAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTCTCTCTTAAATAAGACAAACATG
* * ** * * *
177685 GATAGTCATAC-GAATCCCTATTTTTTTCAGGATGAAGCACCATAAACATAGTCTTCTCAGTAGG
388 AATAGTCATACTGAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGG
* * * *
177749 ACAGACGATATTGACGCTTCGGTA
453 ACACAAGATATTGACGCTTTGGCA
* * * * * * * ** * * *
177773 ACACAAGAAAAGCTTTCTTCCCACCAATTTTTGCAAGGTGTAAGTTTGTGCTTCAACTAAGACAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAA
* ** * * * *
177838 ACATAGATTCTAACAATGTTCTTCATTTATTTTGTGATTA-AGCACTATAAACACAATCTCCTCA
66 ACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGA-CACTATAAACAC-ATTTCCTCA
* * * * * * *
177902 TTAGGATAAATAATATTGGTGATTTTGT-TTTGCGTAGAAACCTTTTCTTTGGCCTATTTTCCTT
129 TTAGGATAAATGATATTGATGATTTT-TATTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTC
* * * * * * * **
177966 ACAATCAGAAATCATCCTTTAAATATGATAACCA-CGATTCTCATAAGAGTCTCAACTCTTTTTA
193 AAAATCAAAAATCATCCTTTAAATATGACAAGCATCTATTCTCATAAGAGTCTCTATTCTTTCCA
* * * * * *
178030 AGATTAGGAACGAAAAACACATTTCCTTCATTAGAAAACATGACATTGTTGTTTTGGTGTCTG-A
258 AGATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTC-GCA
* * *
178094 AGAAAAGCTTTTCTTT-TCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAATACAAACT
322 AGAAAAGCTTTTCTTTCT-ACCGTTTTTGATAGAATCAAAGTTTCTCTCTTAAATAAGACAAACA
*
178158 TGAATAGTCATACT-AATCCCCATTCATTTCAGGATTAGGCACCATAAACATGGTCTTCTCATTA
386 TGAATAGTCATACTGAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTA
* * * *
178222 GGATACAAGGTATTGACGCATTGGCT
451 GGACACAAGATATTGACGCTTTGGCA
* *
178248 TTGCAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAA
1 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAA
* *
178313 ACATGGATTCTAGTAAGGATCTT-ATTCATTTTGTGATTAGGCACTATAAACACTTTCTCCTCAT
66 ACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACATT-TCCTCAT
* *
178377 TAGGATAAATAAAATTGATG
130 TAGGATAAATGATATTGATG
178397 CTTTGGTTCT
Statistics
Matches: 1287, Mismatches: 263, Indels: 50
0.80 0.16 0.03
Matches are distributed among these distances:
473 1 0.00
474 144 0.11
475 852 0.66
476 287 0.22
477 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAA
ACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTTCCTCATT
AGGATAAATGATATTGATGATTTTTATTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTCAAA
ATCAAAAATCATCCTTTAAATATGACAAGCATCTATTCTCATAAGAGTCTCTATTCTTTCCAAGA
TTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCAAGAA
AAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTCTCTCTTAAATAAGACAAACATGAAT
AGTCATACTGAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGACA
CAAGATATTGACGCTTTGGCA
Found at i:178307 original size:950 final size:951
Alignment explanation
Indices: 176353--178396 Score: 2951
Period size: 951 Copynumber: 2.2 Consensus size: 951
176343 GGTTTCGCAC
* * *
176353 GAAAGGCTTTTTTCCCTCCAACTTTTGTAATGTCTAAGTTCATGCCTCAAATGAGACAATCATGT
1 GAAAGGCTTTTTTCCCACCAACTTTTGTAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
*
176418 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGAT
66 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCTGCATTAGGAT
* * *
176483 AAATGATATTGATGATTTTTGCTTGCATGGAAATTTCTTTTTTCCCCTATTTTTCTCAAAATCAA
131 AAATGATATTGATGATTTTTACTTGCATGGAAATTTCTTCTTTCCCCTATTTTACTCAAAATCAA
* *
176548 AATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTTAGTCTCTATTCTTTCCAAAATTTGG
196 AATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTCAGTCTCTAGTCTTTCCAAAATTTGG
* *
176613 AACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAAAAAAGGT
261 AACCAAGAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAAAAAAGGT
* * * *
176678 TTTCTTTCCACTGTTTTCGATAGAGTCAACATTCCTTTCTTAATTAAGACAAACATGAATAGTCA
326 TTTCTTTCCACCGTTTTCGACAGAATCAACATTCCTCTCTTAATTAAGACAAACATGAATAGTCA
* * *** *
176743 TATGAATCCCCATTTTTTTTAGGATTCGGCACCAAAAACATAATCTTCTCTGTAGGACAAACGAT
391 TACGAATCCCCATTTTTTTCAGGATGAAGCACCAAAAACATAATCTTCTCAGTAGGACAAACGAT
* * * * * *
176808 ATTGATGCTTTGGCATCGCAAGAAAGGCTTTTTTCCCCCAATTTTTGCAAAGTCTAAGTTCGTGC
456 ATTGACGCTTCGGCAACACAAGAAAAGCTTTCTTCCCCCAATTTTTGCAAAGTCTAAGTTCGTGC
* * *
176873 CTTAAATAAGACAAACATATATTCCAATAATGATCTTCATTCATTTCGTGAGTAGACATTATAAA
521 CTTAAATAAGACAAACATAGATTCCAACAATGATCTTCATTCATTTCGTGAGTAGACACTATAAA
* * * * *
176938 CACAATTTCCTCATTGGGATAAATGATATTGATGATTTTCTTTTCCATGGAAATCTTTTCTTTGG
586 CACAATCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTCCATAGAAACCTTTTCTTTGG
* * *
177003 CCTGTTACCCTCAAAATCAAAAATCATCCTTTAAATATGATAAGCATCTATTCTCATAAGAGTCT
651 CCTATTACCCTCAAAATCAAAAATCATCCTTTAAATATGATAACCATCGATTCTCATAAGAGTCT
* * * * *
177068 CCCTTCTTTTTGAGATTAGGAACTAAGAACACATTCCCTTCATTAGAATACATGACATTGTTGTT
716 CACTTCTTTTTAAGATTAGGAACGAAAAACACATTCCCTTCATTAGAAAACATGACATTGTTGTT
177133 TTGGTGTCACAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAAT
781 TTGGTGTCACAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAAT
* * * *
177198 AACACAAACTTAAATAGTCATACTGATCCTCGTTCATTTCGGGATTAGGCACCATAAACATAGTC
846 AACACAAACTTAAATAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTC
*
177263 TTCTCATTAGGATACAAGGTATTAACGCTTTGGTTTAACAA
911 TTCTCATTAGGATACAAGGTATTAACGCATTGGTTTAACAA
* *
177304 GAAAGGCTTTTTTCCCACTAACTTTTGTAATGTATAAGTTCATGCCTCAAATGAGACAAACATGG
1 GAAAGGCTTTTTTCCCACCAACTTTTGTAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
* * *
177369 ATTCTAGTAAGGATCTTCATTCGTTTTGTGATTAGATACTACAAACACTTTCTCTGCATTAGGAT
66 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCTGCATTAGGAT
* * *
177434 AAATGATATTGATGATTTTTATTTGCATGGAAATCTT-TTCTTTGCCCTATTTTACTTAAAATCA
131 AAATGATATTGATGATTTTTACTTGCATGGAAAT-TTCTTCTTTCCCCTATTTTACTCAAAATCA
* * * ** *
177498 AAATTCATCCTTTAAATATGACACGCATTGATT-TTCGTTTCAGTCTCTAGTCTTTCCAAGATTT
195 AAATTCATCCCTTAAATATAACAAGCATCAATTCTT-GTTTCAGTCTCTAGTCTTTCCAAAATTT
* *
177562 GGAACCAAGAACACATTCCTTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAGAAAAG
259 GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAAAAAAG
* * * * *
177627 GTTTT-TTTTCACCGTTTTTGACAGAATTAA-AGTTTCTCTCTTAATTAAGACAAACATGGATAG
324 GTTTTCTTTCCACCGTTTTCGACAGAATCAACA-TTCCTCTCTTAATTAAGACAAACATGAATAG
* * * *
177690 TCATACGAATCCCTATTTTTTTCAGGATGAAGCACCATAAACATAGTCTTCTCAGTAGGACAGAC
388 TCATACGAATCCCCATTTTTTTCAGGATGAAGCACCAAAAACATAATCTTCTCAGTAGGACAAAC
* * * *
177755 GATATTGACGCTTCGGTAACACAAGAAAAGCTTTCTTCCCACCAATTTTTGCAAGGTGTAAGTTT
453 GATATTGACGCTTCGGCAACACAAGAAAAGCTTTCTTCCC-CCAATTTTTGCAAAGTCTAAGTTC
* * * * * *
177820 GTG-CTTCAACTAAGACAAACATAGATTCTAACAATGTTCTTCATTTATTTTGTGATTA-AGCAC
517 GTGCCTT-AAATAAGACAAACATAGATTCCAACAATGATCTTCATTCATTTCGTGAGTAGA-CAC
* * * *
177883 TATAAACACAATCTCCTCATTAGGATAAATAATATTGGTGATTTTGTTTTGCGTAGAAACCTTTT
580 TATAAACACAATCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTCCATAGAAACCTTTT
** * * *
177948 CTTTGGCCTATTTTCCTTACAATCAGAAATCATCCTTTAAATATGATAACCA-CGATTCTCATAA
645 CTTTGGCCTATTACCCTCAAAATCAAAAATCATCCTTTAAATATGATAACCATCGATTCTCATAA
*
178012 GAGTCTCAAC-TCTTTTTAAGATTAGGAACGAAAAACACATTTCCTTCATTAGAAAACATGACAT
710 GAGTCTC-ACTTCTTTTTAAGATTAGGAACGAAAAACACATTCCCTTCATTAGAAAACATGACAT
**
178076 TGTTGTTTTGGTGTCTGAAGAAAAGCTTTTCTTT-TCACCGTTTTTGATAGAATCAAAGTTTGTC
774 TGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCT-ACCGTTTTTGATAGAATCAAAGTTTGTC
* * *
178140 TCTTAAATAATACAAACTTGAATAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAA
838 TCCTAAATAACACAAACTTAAATAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAA
* * *
178205 ACATGGTCTTCTCATTAGGATACAAGGTATTGACGCATTGGCTTT-GCAA
903 ACATAGTCTTCTCATTAGGATACAAGGTATTAACGCATTGG-TTTAACAA
* * *
178254 GAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
1 GAAAGGCTTTTTTCCCACCAACTTTTGTAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
*
178319 ATTCTAGTAAGGATCTT-ATTCATTTTGTGATTAGGCACTATAAACACTTTCTCCT-CATTAGGA
66 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCT-CTGCATTAGGA
* *
178382 TAAATAAAATTGATG
130 TAAATGATATTGATG
178397 CTTTGGTTCT
Statistics
Matches: 971, Mismatches: 112, Indels: 22
0.88 0.10 0.02
Matches are distributed among these distances:
949 54 0.06
950 446 0.46
951 469 0.48
952 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (951 bp):
GAAAGGCTTTTTTCCCACCAACTTTTGTAATGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCTGCATTAGGAT
AAATGATATTGATGATTTTTACTTGCATGGAAATTTCTTCTTTCCCCTATTTTACTCAAAATCAA
AATTCATCCCTTAAATATAACAAGCATCAATTCTTGTTTCAGTCTCTAGTCTTTCCAAAATTTGG
AACCAAGAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAAAAAAGGT
TTTCTTTCCACCGTTTTCGACAGAATCAACATTCCTCTCTTAATTAAGACAAACATGAATAGTCA
TACGAATCCCCATTTTTTTCAGGATGAAGCACCAAAAACATAATCTTCTCAGTAGGACAAACGAT
ATTGACGCTTCGGCAACACAAGAAAAGCTTTCTTCCCCCAATTTTTGCAAAGTCTAAGTTCGTGC
CTTAAATAAGACAAACATAGATTCCAACAATGATCTTCATTCATTTCGTGAGTAGACACTATAAA
CACAATCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTCCATAGAAACCTTTTCTTTGG
CCTATTACCCTCAAAATCAAAAATCATCCTTTAAATATGATAACCATCGATTCTCATAAGAGTCT
CACTTCTTTTTAAGATTAGGAACGAAAAACACATTCCCTTCATTAGAAAACATGACATTGTTGTT
TTGGTGTCACAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAAT
AACACAAACTTAAATAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTC
TTCTCATTAGGATACAAGGTATTAACGCATTGGTTTAACAA
Found at i:178619 original size:159 final size:158
Alignment explanation
Indices: 178289--179257 Score: 558
Period size: 159 Copynumber: 6.1 Consensus size: 158
178279 TGTAAAGTCT
* * * *
178289 AAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTT-ATTCATTTTGTGATTAG
1 AAGTTCATCCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTAATTAG
* * * * ** * **
178353 GCACTATAAACACT-TTCTCCTCATTAGGATAAATAAAATTGATGCTTTGGTTCT-CACAAGAAA
66 GCACTATAAACA-TATTCACCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAA
* * * * **
178416 GGTTTTC-CTCCCATCGATTTT-TGTAAAGTGT
129 GCTTTTCTTTCCC--CTATTTTCT-TAAAATCA
** * * *
178447 AAGTTTGTTCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTCGTAATTAA
1 AAGTTCATCCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTAATTAG
* *
178512 GCACTATTAACATATTCACCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATC
66 GCACTATAAACATATTCACCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAGC
*
178577 TTTTCTTTGCCCTATTTTCCTTAAAATCA
131 TTTTCTTTCCCCTATTTT-CTTAAAATCA
*** * * * * * * * *
178606 AAACACATCCCTCAAA-AATGACAAACATTGATTTTCA-TAAGGGTCTCCACTCTTTTCG-AGAT
1 AAGTTCATCCCTCAAATGA-GACAAACATGGATTCT-AGTAATGATCTTCATTCATTTCGTA-AT
* * * * * * * * * ** *
178668 TAGGAACTA-AGAACACATTCACCCCATTAGAATACATGACATTGTTG-TTTTGGTATCACAAGA
63 TAGGCACTATA-AACATATTCACCTCATTAGGATAAATGATATTGATGATTTT-CTTTTGCATGA
* ** *
178731 AAAGCTTTTTTTTCCACCGT-TTTTGATAGAATCA
126 AAAGCTTTTCTTTCC-CC-TATTTTCTTAAAATCA
* * * * * ** * * * * *
178765 AAGTTTATCTCTTAAATAACACAAAGTTGAATAGTC-A-TACTAATCCTCATTCATTTCAG-GAT
1 AAGTTCATCCCTCAAATGAGACAAACATGGAT--TCTAGTAATGATCTTCATTCATTTC-GTAAT
** * ** * * ** **
178827 TAGGCACCGTAAACATAGTCTTCTCATTAGGATACAA-GGTATTGATGCTTTAGTTTCACATGAA
63 TAGGCACTATAAACATATTCACCTCATTAGGATA-AATGATATTGATGATTTTCTTTTGCATGAA
* * * * ** * *
178891 AGGCTTTTC-TCCCACCAACTTTGGTAAAGTCT
127 AAGCTTTTCTTTCC-CCTATTTTCTTAAAATCA
** * * *
178923 AAGTTCAAACCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG
1 AAGTTCATCCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTAATTAG
* * * * *
178988 GCACTATAAACACT-TTCTCCTCATTAGGATAAATAAAATTGATGCTTTGGT-TTTTGCA-GGAA
66 GCACTATAAACA-TATTCACCTCATTAGGATAAATGATATTGATGATTT--TCTTTTGCATGAAA
* * * **
179050 AGGTTTTC-CTCCCACTGATTTT-TGTAAAGTGT
128 AGCTTTTCTTTCCC-CT-ATTTTCT-TAAAATCA
* * * *
179082 AAGTTCATGCATCAAATGAGACAAAAATGGATTCTAGTAATGATCTTCATTCATTTCGTAATCAG
1 AAGTTCATCCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTAATTAG
* * * *
179147 GCACTATTAACACATTCACCTCATTAGGATAAATGATATTGAAGATTTTCTTTTGCATGAAAATC
66 GCACTATAAACATATTCACCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAGC
*
179212 TTTTCTTTGCCCTATTTTCCTTAAAATCA
131 TTTTCTTTCCCCTATTTT-CTTAAAATCA
** *
179241 AAACTCATCCCTTAAAT
1 AAGTTCATCCCTCAAAT
179258 ATGGCAAGCA
Statistics
Matches: 605, Mismatches: 169, Indels: 73
0.71 0.20 0.09
Matches are distributed among these distances:
156 2 0.00
157 6 0.01
158 173 0.29
159 396 0.65
160 26 0.04
161 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (158 bp):
AAGTTCATCCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTAATTAG
GCACTATAAACATATTCACCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAGC
TTTTCTTTCCCCTATTTTCTTAAAATCA
Found at i:178730 original size:950 final size:949
Alignment explanation
Indices: 176353--178738 Score: 2277
Period size: 950 Copynumber: 2.5 Consensus size: 949
176343 GGTTTCGCAC
* * * * *
176353 GAAAGGCTTTTTTCCCTCCAACTTTTGTAATGTCTAAGTTCATGCCTCAAATGAGACAATCATGT
1 GAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTATAAGTTCATGCCTCAAATGAGACAAACATGG
* *
176418 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTATAAACACTTTCTCCGCATTAGGAT
66 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTACAAACACTTTCTCTGCATTAGGAT
* * ** * *
176483 AAATGATATTGATGATTT-T-TGCTTGCATGGAAATTTCTTTT-T-TCCCCTATTTT-TCTCAAA
131 AAATAAAATTGATGATTTGTAT-C-TGCAAAGAAA--GCTTTTCTCTGCCCTATTTTAT-T-AAA
* * *** * * * * *
176543 ATCAAAATTCATCCCTT-AAATATAACAAGCATCAATTCTTGTTTTAGTCTCTATTCTTTCCAAA
190 ATCAAAATTCAT-CCTTCAAATATGACAAACAAGGATTCTAGTATCAGTCTCTAGTCTTTCCAAG
** * * * * * *
176607 ATTTGGAACCAAGAACACATTCC-CTTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAA
254 ATTAAGAACCAAGAACACATTCCTC-TCATTAGGATAAATGACATTAATGATTTGCTGTCGCAAG
* * * * * * * ** ** * *
176671 AAAAGGTTTTCTTTCCACTGTTTTCGATAGAGTCAACATTC-CTTTCTTAATTAAGACAAACATG
318 AAAAGCTTTT-TTTGCACCGTTTTTGACAAAATCAA-AGACACTCCCTCAATAAAGACAAACATG
* * * * * * *** * * * * ** * * *
176735 AATAGTCATATGAATCCCCATTTTTTTTAGGATTCGGCACCAAAAACATAATCTTCTCTGTAGGA
381 GATAGTCATAAGAATCCCTACTCTTTTCAGGATGAAGAACCATAAACACAGTCACCCCAGTAGAA
* * * * * * *
176800 CAAACGATATTGATGCTTTGGCATCGCAAGAAAGGCTTTTTTCCCCCAATTTTTGCAAAGTCTAA
446 CACACGACATTGACGCTTTGGTATCACAAGAAAAGCTTTCTTCCCCCAATTTTTGCAAAGTCTAA
* *
176865 GTTCGTGCCTTAAATAAGACAAACATATATTCCAATAATGATCTTCATTCATTTCGTGAGTAGAC
511 GTTCGTGCCTTAAATAAGACAAACATAGATTCCAACAATGATCTTCATTCATTTCGTGAGTAGAC
* * * * * *
176930 ATTATAAACACAATTTCCTCATTGGGATAAATGATATTGATGATTTTCTTTTCCATGGAAATCTT
576 ACTATAAACACAATCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTCCATAGAAACCTT
* * *
176995 TTCTTTGGCCTGTTACCCTCAAAATCAAAAATCATCCTTTAAATATGATAAGCATCTATTCTCAT
641 TTCTTTGGCCTATTACCCTCAAAATCAAAAATCATCCTTTAAATATGATAACCATCGATTCTCAT
* * * * *
177060 AAGAGTCTCCCTTCTTTTTGAGATTAGGAACTAAGAACACATTCCCTTCATTAGAATACATGACA
706 AAGAGTCTCACTTCTTTTTAAGATTAGGAACGAAAAACACATTCCCTTCATTAGAAAACATGACA
177125 TTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTGTC
771 TTGTTGTTTTGGTGTCACAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTGTC
* * * *
177190 TCCTAAATAACACAAACTTAAATAGTCATACTGATCCTCGTTCATTTCGGGATTAGGCACCATAA
836 TCCTAAATAACACAAACTTAAATAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAA
*
177255 ACATAGTCTTCTCATTAGGATACAAGGTATTAACGCTTTGGTTTAACAA
901 ACATAGTCTTCTCATTAGGATACAAGGTATTAACGCATTGGTTTAACAA
* *
177304 GAAAGGCTTTTTTCCCACTAACTTTTGTAATGTATAAGTTCATGCCTCAAATGAGACAAACATGG
1 GAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTATAAGTTCATGCCTCAAATGAGACAAACATGG
* *
177369 ATTCTAGTAAGGATCTTCATTCGTTTTGTGATTAGATACTACAAACACTTTCTCTGCATTAGGAT
66 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTACAAACACTTTCTCTGCATTAGGAT
* * * * ** * *
177434 AAATGATATTGATGATTTTTATTTGCATGGAAATCTTTTCTTTGCCCTATTTTACTTAAAATCAA
131 AAATAAAATTGATGATTTGTATCTGCAAAGAAAGCTTTTCTCTGCCCTATTTTA-TTAAAATCAA
* ** ** * * * **
177499 AATTCATCCTTTAAATATGACACGCATTGATTTTCGTTTCAGTCTCTAGTCTTTCCAAGATTTGG
195 AATTCATCCTTCAAATATGACAAACAAGGATTCTAGTATCAGTCTCTAGTCTTTCCAAGATTAAG
* * * * *
177564 AACCAAGAACACATTCCTTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAGAAAAGGT
260 AACCAAGAACACATTCCTCTCATTAGGATAAATGACATTAATGATTTGCTGTCGCAAGAAAAGCT
* * * *** * * *
177629 TTTTTTTCACCGTTTTTGACAGAATTAAAGTTTCTCTCTTAATTAAGACAAACATGGATAGTCAT
325 TTTTTTGCACCGTTTTTGACAAAATCAAAGACACTCCCTCAATAAAGACAAACATGGATAGTCAT
* * * * * ** * * * *
177694 ACGAATCCCTATTTTTTTCAGGATGAAGCACCATAAACATAGTCTTCTCAGTAGGACAGACGATA
390 AAGAATCCCTACTCTTTTCAGGATGAAGAACCATAAACACAGTCACCCCAGTAGAACACACGACA
* * * * *
177759 TTGACGCTTCGGTAACACAAGAAAAGCTTTCTTCCCACCAATTTTTGCAAGGTGTAAGTTTGTG-
455 TTGACGCTTTGGTATCACAAGAAAAGCTTTCTTCCC-CCAATTTTTGCAAAGTCTAAGTTCGTGC
* * * * * *
177823 CTTCAACTAAGACAAACATAGATTCTAACAATGTTCTTCATTTATTTTGTGATTA-AGCACTATA
519 CTT-AAATAAGACAAACATAGATTCCAACAATGATCTTCATTCATTTCGTGAGTAGA-CACTATA
* * * *
177887 AACACAATCTCCTCATTAGGATAAATAATATTGGTGATTTTGTTTTGCGTAGAAACCTTTTCTTT
582 AACACAATCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTCCATAGAAACCTTTTCTTT
** * * *
177952 GGCCTATTTTCCTTACAATCAGAAATCATCCTTTAAATATGATAACCA-CGATTCTCATAAGAGT
647 GGCCTATTACCCTCAAAATCAAAAATCATCCTTTAAATATGATAACCATCGATTCTCATAAGAGT
*
178016 CTCAAC-TCTTTTTAAGATTAGGAACGAAAAACACATTTCCTTCATTAGAAAACATGACATTGTT
712 CTC-ACTTCTTTTTAAGATTAGGAACGAAAAACACATTCCCTTCATTAGAAAACATGACATTGTT
** *
178080 GTTTTGGTGTCTGAAGAAAAGCTTTTCTTT-TCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
776 GTTTTGGTGTCACAAGAAAAGCTTTTCTTTCT-ACCGTTTTTGATAGAATCAAAGTTTGTCTCCT
* *
178144 AAATAATACAAACTTGAATAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACAT
840 AAATAACACAAACTTAAATAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACAT
* * *
178209 GGTCTTCTCATTAGGATACAAGGTATTGACGCATTGGCTTT-GCAA
905 AGTCTTCTCATTAGGATACAAGGTATTAACGCATTGG-TTTAACAA
* * *
178254 GAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
1 GAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTATAAGTTCATGCCTCAAATGAGACAAACATGG
* *
178319 ATTCTAGTAAGGATCTT-ATTCATTTTGTGATTAGGCACTATAAACACTTTCTCCT-CATTAGGA
66 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTACAAACACTTTCT-CTGCATTAGGA
* *
178382 TAAATAAAATTGATGCTTTGGT-TCT-CACAAGAAAGGTTTTC-CT-CCCATCGATTTT-TGTAA
130 TAAATAAAATTGATGATTT-GTATCTGCA-AAGAAAGCTTTTCTCTGCCC-T--ATTTTAT-TAA
* * ** ** * *
178442 AGTGTAAGTTTGTTCC-TCAAATGA-GACAAACAAGGATTCTAGTAATGA-TCT-TCATTCATTT
189 AAT-CAAAATTCATCCTTCAAAT-ATGACAAACAAGGATTCTAGT-ATCAGTCTCT-AGTC-TTT
** * * ** * * * * * *
178503 CGTA-ATTAAGCACTATTAACATATTCAC-CTCATTAGGATAAATGATATTGATGATTTTCTTTT
249 CCAAGATTAAGAACCAAGAACACATTC-CTCTCATTAGGATAAATGACATTAATGATTTGCTGTC
* * *
178566 GCATGAAAATCTTTTCTTTGC-CC-TATTTT-CCTTAAAATCAAA-ACACATCCCTCAA-AAATG
313 GCAAGAAAAGCTTTT-TTTGCACCGT-TTTTGAC--AAAATCAAAGACAC-TCCCTCAATAAA-G
* ** ** * * * *
178626 ACAAACATTGATTTTCATAAGGGTCTCC-ACTCTTTTC-GAGATTAGGAACTA-AGAACACATTC
372 ACAAACATGGATAGTCATAAGAATC-CCTACTCTTTTCAG-GATGAAGAACCATA-AACACAGTC
* * * ** *
178688 ACCCCATTAGAATACATGACATTGTTGTTTTGGTATCACAAGAAAAGCTTT
434 ACCCCAGTAGAACACACGACATTGACGCTTTGGTATCACAAGAAAAGCTTT
178739 TTTTTCCACC
Statistics
Matches: 1205, Mismatches: 193, Indels: 75
0.82 0.13 0.05
Matches are distributed among these distances:
947 3 0.00
948 8 0.01
949 168 0.14
950 565 0.47
951 457 0.38
952 2 0.00
953 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (949 bp):
GAAAGGCTTTTTTCCCACCAACTTTTGTAAAGTATAAGTTCATGCCTCAAATGAGACAAACATGG
ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGACACTACAAACACTTTCTCTGCATTAGGAT
AAATAAAATTGATGATTTGTATCTGCAAAGAAAGCTTTTCTCTGCCCTATTTTATTAAAATCAAA
ATTCATCCTTCAAATATGACAAACAAGGATTCTAGTATCAGTCTCTAGTCTTTCCAAGATTAAGA
ACCAAGAACACATTCCTCTCATTAGGATAAATGACATTAATGATTTGCTGTCGCAAGAAAAGCTT
TTTTTGCACCGTTTTTGACAAAATCAAAGACACTCCCTCAATAAAGACAAACATGGATAGTCATA
AGAATCCCTACTCTTTTCAGGATGAAGAACCATAAACACAGTCACCCCAGTAGAACACACGACAT
TGACGCTTTGGTATCACAAGAAAAGCTTTCTTCCCCCAATTTTTGCAAAGTCTAAGTTCGTGCCT
TAAATAAGACAAACATAGATTCCAACAATGATCTTCATTCATTTCGTGAGTAGACACTATAAACA
CAATCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTCCATAGAAACCTTTTCTTTGGCC
TATTACCCTCAAAATCAAAAATCATCCTTTAAATATGATAACCATCGATTCTCATAAGAGTCTCA
CTTCTTTTTAAGATTAGGAACGAAAAACACATTCCCTTCATTAGAAAACATGACATTGTTGTTTT
GGTGTCACAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAA
CACAAACTTAAATAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTT
CTCATTAGGATACAAGGTATTAACGCATTGGTTTAACAA
Found at i:179252 original size:635 final size:634
Alignment explanation
Indices: 177774--179666 Score: 2638
Period size: 635 Copynumber: 3.0 Consensus size: 634
177764 GCTTCGGTAA
* * * * * * * * * *
177774 CACAAGAAAAGCTTTCTTCCCACCAATTTTTGCAAGGTGTAAGTTTGTGCTTCAACTAAGACAAA
1 CACAAGAAAGGTTTTCCTCCCATCGATTTTTGTAAAGTGTAAGTTTGTGCATCAAATGAGACAAA
* * ** * * * * * * *
177839 CATAGATTCTAACAATGTTCTTCATTTATTTTGTGATTAAGCACTATAAACACAATCTCCTCATT
66 AATGGATTCTAGTAATGATCTTCATTCATTTCGTAATTAAGCACTATTAACACATTCACCTCATT
* * * * * * *
177904 AGGATAAATAATATTGGTGATTTTGTTTTGCGT-AGAAACCTTTTCTTTGGCCTATTTTCCTTAC
131 AGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTCCTTAA
* * * *
177968 AATCAGAAA-TCATCCTTTAAATATGATAACCA-CGATTCTCATAAGAGTCTCAACTCTTTTTAA
195 AATCA-AAACTCATCCCTTAAATATGACAAACATCGATTCTCATAAGAGTCTCAACTCTTTTTGA
* * * * **
178031 GATTAGGAACGAAAAACACATTTC-CTTCATTAGAAAACATGACATTGTTGTTTTGGTGTCTGAA
259 GATTAGGAACTAAGAACACA-TTCACCTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAA
*
178095 GAAAAGCTTTTCTTTT-CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAATACAAACTT
323 GAAAAGCTTTT-TTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTT
*
178159 GAATAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATGGTCTTCTCATTAGG
387 GAATAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGG
* * *
178224 ATACAAGGTATTGACGCATTGGCTTTGCA-A-GAAAGGCTTTTTTCTCACCAATTTTTGTAAAGT
452 ATACAAGGTATTGACGCTTTGG-TTT-CACATGAAAGGC-TTTTTCCCACCAACTTTTGTAAAGT
178287 CTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTT-ATTCATTTTGTGATT
514 CTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATT
178351 AGGCACTATAAACACTTTCTCCTCATTAGGATAAATAAAATTGATGCTTTGGTTCT
579 AGGCACTATAAACACTTTCTCCTCATTAGGATAAATAAAATTGATGCTTTGGTTCT
* *
178407 CACAAGAAAGGTTTTCCTCCCATCGATTTTTGTAAAGTGTAAGTTTGTTCCTCAAATGAGACAAA
1 CACAAGAAAGGTTTTCCTCCCATCGATTTTTGTAAAGTGTAAGTTTGTGCATCAAATGAGACAAA
*
178472 CAA-GGATTCTAGTAATGATCTTCATTCATTTCGTAATTAAGCACTATTAACATATTCACCTCAT
66 -AATGGATTCTAGTAATGATCTTCATTCATTTCGTAATTAAGCACTATTAACACATTCACCTCAT
178536 TAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAA
130 TAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAA
* * * * * * * *
178601 AATCAAAACACATCCCTCAAAAATGACAAACATTGATTTTCATAAGGGTCTCCACTCTTTTCGAG
195 AATCAAAACTCATCCCTTAAATATGACAAACATCGATTCTCATAAGAGTCTCAACTCTTTTTGAG
* *
178666 ATTAGGAACTAAGAACACATTCACCCCATTAGAATACATGACATTGTTGTTTTGGTATCACAAGA
260 ATTAGGAACTAAGAACACATTCACCTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGA
* *
178731 AAAGCTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAACACAAAGTTGAA
325 AAAGCTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTGAA
* *
178796 TAGTCATACTAATCCTCATTCATTTCAGGATTAGGCACCGTAAACATAGTCTTCTCATTAGGATA
390 TAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATA
* * *
178861 CAAGGTATTGATGCTTTAGTTTCACATGAAAGGCTTTTCTCCCACCAACTTTGGTAAAGTCTAAG
455 CAAGGTATTGACGCTTTGGTTTCACATGAAAGGCTTTT-TCCCACCAACTTTTGTAAAGTCTAAG
**
178926 TTCAAACCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCA
519 TTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCA
*
178991 CTATAAACACTTTCTCCTCATTAGGATAAATAAAATTGATGCTTTGGTTTT
584 CTATAAACACTTTCTCCTCATTAGGATAAATAAAATTGATGCTTTGGTTCT
** * **
179042 TGCAGGAAAGGTTTTCCTCCCA-CTGATTTTTGTAAAGTGTAAGTTCATGCATCAAATGAGACAA
1 CACAAGAAAGGTTTTCCTCCCATC-GATTTTTGTAAAGTGTAAGTTTGTGCATCAAATGAGACAA
* *
179106 AAATGGATTCTAGTAATGATCTTCATTCATTTCGTAATCAGGCACTATTAACACATTCACCTCAT
65 AAATGGATTCTAGTAATGATCTTCATTCATTTCGTAATTAAGCACTATTAACACATTCACCTCAT
*
179171 TAGGATAAATGATATTGAAGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAA
130 TAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAA
* * * * *
179236 AATCAAAACTCATCCCTTAAATATGGCAAGCATCAATTCTCATAAAAGTCTCTACTCTTTTTGAG
195 AATCAAAACTCATCCCTTAAATATGACAAACATCGATTCTCATAAGAGTCTCAACTCTTTTTGAG
* * * * * *
179301 ATTGGGAACTAAGAACACATTTACCTCATTAGAATACATGGCATTATTTTTTTGGTGTCATAAGA
260 ATTAGGAACTAAGAACACATTCACCTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGA
* ** * * * * *
179366 AAAGCTTTTCTTTCCACAATTTTTTATAGAATCAAAGTTTGTCTCTTAAATTACACAATCCTAAA
325 AAAGCTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTGAA
* * * *
179431 CAGTCATACTAATCCCCATTTATTTCAAGATTAAGCACCATAAACATAGTCTTCTCATTAGGATA
390 TAGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATA
*
179496 CAAGGTATTGACGCTTTGGTTTCGCAAT-AAAGGCATTTTTCCCACCAACTTTTGTAAAGTCTAA
455 CAAGGTATTGACGCTTTGGTTTCAC-ATGAAAGGC-TTTTTCCCACCAACTTTTGTAAAGTCTAA
* * *
179560 GTTCATGCCTCAAATGAGACAAATATGGATTCTAGTAAGGATCTTCATTTATTTTGTGATTAGAC
518 GTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGC
* * * * * *
179625 ACTATAAACACCTTCTACGCATTTGGATAAATGATATTGATG
583 ACTATAAACACTTTCTCCTCATTAGGATAAATAAAATTGATG
179667 ATTTTTGTTT
Statistics
Matches: 1119, Mismatches: 127, Indels: 26
0.88 0.10 0.02
Matches are distributed among these distances:
632 5 0.00
633 197 0.18
634 291 0.26
635 620 0.55
636 6 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (634 bp):
CACAAGAAAGGTTTTCCTCCCATCGATTTTTGTAAAGTGTAAGTTTGTGCATCAAATGAGACAAA
AATGGATTCTAGTAATGATCTTCATTCATTTCGTAATTAAGCACTATTAACACATTCACCTCATT
AGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
ATCAAAACTCATCCCTTAAATATGACAAACATCGATTCTCATAAGAGTCTCAACTCTTTTTGAGA
TTAGGAACTAAGAACACATTCACCTCATTAGAATACATGACATTGTTGTTTTGGTGTCACAAGAA
AAGCTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAACACAAACTTGAAT
AGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
AAGGTATTGACGCTTTGGTTTCACATGAAAGGCTTTTTCCCACCAACTTTTGTAAAGTCTAAGTT
CATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACT
ATAAACACTTTCTCCTCATTAGGATAAATAAAATTGATGCTTTGGTTCT
Found at i:181312 original size:158 final size:158
Alignment explanation
Indices: 181150--181526 Score: 393
Period size: 159 Copynumber: 2.4 Consensus size: 158
181140 TACTAATCCC
* * ***
181150 CATTCATTTCAAGATTAGGCACCATAAACATAGTCTTCTCACTAGGATACAA-GGTATTGACGCA
1 CATTCATTTCAA-ATTAGGCACTATAAACATAGTCTCCTCACTAGGATA-AATAAAATTGACGCA
* * *
181214 TTGGTT-TCGCAAGAAAGGCTTTT-TTCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
64 TTGGTTCTCGCAAGAAAGG-TTTTCCTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAA
181277 TGAGACAAACATGGATTCTAGTAAGGATCTT
128 TGAGACAAACATGGATTCTAGTAAGGATCTT
*** * * * *
181308 CATTCATTTTGTTATTAGGCACTATAAACACT-TTCTCCTCATTAGGATAAATAAAATTGATGCT
1 CATTCA-TTTCAAATTAGGCACTATAAACA-TAGTCTCCTCACTAGGATAAATAAAATTGACGCA
* * * * **
181372 TTGGTTCTCGCAAGAAAGGTTTTCCTCCCATCGATTTTTGCAAGGTGTAAGTTTGTGCCTCAAAT
64 TTGGTTCTCGCAAGAAAGGTTTTCCTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAAT
* *
181437 GAGACAAACATGGATTCTTGTAATGATCTT
129 GAGACAAACATGGATTCTAGTAAGGATCTT
* * * * ** * *
181467 CATTCATTTCGTAATTAGGCACTATTAACATATTCACCTCGTTAGGATAAACAATATTGA
1 CATTCATTTC-AAATTAGGCACTATAAACATAGTCTCCTCACTAGGATAAATAAAATTGA
181527 TGATTTTCTT
Statistics
Matches: 182, Mismatches: 30, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
157 2 0.01
158 57 0.31
159 123 0.68
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (158 bp):
CATTCATTTCAAATTAGGCACTATAAACATAGTCTCCTCACTAGGATAAATAAAATTGACGCATT
GGTTCTCGCAAGAAAGGTTTTCCTCCCACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGA
GACAAACATGGATTCTAGTAAGGATCTT
Found at i:181444 original size:159 final size:158
Alignment explanation
Indices: 181205--181528 Score: 427
Period size: 159 Copynumber: 2.0 Consensus size: 158
181195 GATACAAGGT
* * * *
181205 ATTGACGCATTGGTTTCGCAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCATG
1 ATTGATGCATTGGTTTCGCAAGAAAGGCTTTTCTCCCACCAATTTTTGCAAAGTCTAAGTTCATG
* *
181270 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTTATTAGGCACTATAA
66 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTAATTAGGCACTATAA
* *
181335 ACACT-TTCTCCTCATTAGGATAAATAAA
131 ACA-TATTCACCTCATTAGGATAAACAAA
* * * * * **
181363 ATTGATGCTTTGGTTCTCGCAAGAAAGG-TTTTCCTCCCATCGATTTTTGCAAGGTGTAAGTTTG
1 ATTGATGCATTGGTT-TCGCAAGAAAGGCTTTT-CTCCCACCAATTTTTGCAAAGTCTAAGTTCA
* *
181427 TGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTCGTAATTAGGCACTAT
64 TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTAATTAGGCACTAT
* * *
181492 TAACATATTCACCTCGTTAGGATAAACAAT
129 AAACATATTCACCTCATTAGGATAAACAAA
181522 ATTGATG
1 ATTGATG
181529 ATTTTCTTTT
Statistics
Matches: 143, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
158 18 0.13
159 125 0.87
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.36
Consensus pattern (158 bp):
ATTGATGCATTGGTTTCGCAAGAAAGGCTTTTCTCCCACCAATTTTTGCAAAGTCTAAGTTCATG
CCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTAATTAGGCACTATAA
ACATATTCACCTCATTAGGATAAACAAA
Found at i:183355 original size:39 final size:39
Alignment explanation
Indices: 183280--183370 Score: 105
Period size: 39 Copynumber: 2.3 Consensus size: 39
183270 TTTTCTTTCT
183280 CCCTTAATTAAAGTAATTTTAACAAATTCGTACATTCTCC
1 CCCTTAATTAAAGTAATTTTAACAAATTCG-ACATTCTCC
* *
183320 CCCTTAA-TAAGGTAATTTTAGCAAATTTACG-CATTCTCC
1 CCCTTAATTAAAGTAATTTTAACAAA-TT-CGACATTCTCC
* *
183359 CCTTTTATTAAA
1 CCCTTAATTAAA
183371 AAATCTCCCC
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
39 29 0.67
40 12 0.28
41 2 0.05
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (39 bp):
CCCTTAATTAAAGTAATTTTAACAAATTCGACATTCTCC
Found at i:189207 original size:158 final size:159
Alignment explanation
Indices: 189045--189370 Score: 392
Period size: 159 Copynumber: 2.1 Consensus size: 159
189035 CACTAATCCC
***
189045 CATTCATTTCAGGATTAGGCACCATAAACA-TAGTCT-TCTCATCAGGATACAA-GGTATTGATG
1 CATTCATTTCAGGATTAGGCACCATAAACACT-GTCTCT-TCATCAGGATA-AATAAAATTGATG
*
189107 CTTTAG-TTTCGCAAAAAAAGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGTTCATACCTCAA
63 CTTTAGCTTTCGCAAAAAAAGCTTTCTTCCCACCAACTTTTGTAAAGTCTAAGTTCATACCTCAA
*
189171 ATGAGA-CAAGCATTGATTCTAGTAAGGATCTT
128 ATGAGACCAA-CATGGATTCTAGTAAGGATCTT
* * * * *
189203 CATTCATTTTATGATTAGGCACTATAAACACTTTCTCTTCATTAGGATAAATAAAATTGATGCTT
1 CATTCATTTCAGGATTAGGCACCATAAACACTGTCTCTTCATCAGGATAAATAAAATTGATGCTT
* * * * ** * * * *
189268 TGGCTTTTGCAAGAAAGGCTTTCTTCCCACTGATTTTTGTAAAGTGTAAGTTCGTGCCTCAAATG
66 TAGCTTTCGCAAAAAAAGCTTTCTTCCCACCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATG
*
189333 AGACCAACATGGATTCTAGTAATGATCTT
131 AGACCAACATGGATTCTAGTAAGGATCTT
189362 CATTCATTT
1 CATTCATTT
189371 TCTAATTAGG
Statistics
Matches: 142, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
157 2 0.01
158 52 0.37
159 85 0.60
160 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (159 bp):
CATTCATTTCAGGATTAGGCACCATAAACACTGTCTCTTCATCAGGATAAATAAAATTGATGCTT
TAGCTTTCGCAAAAAAAGCTTTCTTCCCACCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATG
AGACCAACATGGATTCTAGTAAGGATCTT
Found at i:189208 original size:475 final size:475
Alignment explanation
Indices: 188104--189264 Score: 1438
Period size: 475 Copynumber: 2.4 Consensus size: 475
188094 AAAAAGAATG
* * *
188104 CAGGATTAGGCGCCATAAGCATAGTTTTCTCATTAGGATACAAGGTATTGACGCTTTGGTTTCGC
1 CAGGATTAGGCACCATAAACATAGTCTTCTCA-TAGGATACAAGGTATTGACGCTTTGGTTTCGC
* * * * *
188169 -AAGAAAGGTTTTTTCCCCCCAACTTTTGTAAAGTCTAACTTCATTCCTTAAATGAGACAAACAT
65 AAAAAAAGCTTTTTTCCCCCCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACAT
* * * **
188233 GGACTCTAGTAAGGATCTTCATTCATTTTGC-GATTAGACACTATAAACACTTTCTCCGCATTAG
130 AGATTCTAGTAAGGATCTTCATTCATTTT-CTGATTAGGCACTATAAACACTTTCTCTTCATTAG
* ** *
188297 GATAAATGATATTGATGATTTTTGTTTGCATGGAAATCTTTTCTTTGCCATATTTTACTTAAAAT
194 GATAAATAATATTGATGATTTTTGTTTGCAAAGAAACCTTTTCTTTGCCATATTTTACTTAAAAT
* * * *** * *
188362 CAAAATTCATCCGTTAAATATGACAAGCATCGATTCTCGTTTTAGAGTCTATTCTTTTCAAGATT
259 CAAAAATCATCCGTTAAATATGACAAGCACCGATTCTCATAAGAGACTCCATTCTTTTCAAGATT
* * *
188427 TGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
324 AGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCACAAGAAAA
* ** * * * * *
188492 GGTTTTCTTTCCACTGTTTTCGACAGAATTAAAGTTTCTCTCTTAATTAAGACAAACATGGATAC
389 GCTTTTCTTTCCACCATTTTCGACAGAATCAAAGTTTATCTCTTAAATAACACAAACATGAATAC
* * **
188557 TTATACAAATCCCCATTTTTTT
454 TCACACAAATCCCCATTCATTT
* * * * *
188579 CAGGATTAGGAACCATAAACATAGTCTTCTTAGTAGGACAGACAA--TATTAACGCTTTGGTATC
1 CAGGATTAGGCACCATAAACATAGTCTTCTCA-TAGG--ATACAAGGTATTGACGCTTTGGTTTC
* * * * * * *
188642 GCAAAACAAGCTTTGTTCCCCCCAATTTTTGTAAACTGTAAGTTCGTGCCTCAAATGAGACAAAC
63 GCAAAAAAAGCTTTTTTCCCCCCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAAC
* ** *
188707 ATAGATTCTAGTAATGG-TCTTCATTCATTTTCTGATTAGGCATTATAAACACAATCTCTTTATT
128 ATAGATTCTAGTAA-GGATCTTCATTCATTTTCTGATTAGGCACTATAAACACTTTCTCTTCATT
* * * *
188771 AGGATAGATAATATTGATGATTTTAT-TTTGTAAAGAAACCTTTTCTTTGGTC-TATTTTCCTTA
192 AGGATAAATAATATTGATGATTTT-TGTTTGCAAAGAAACCTTTTCTTT-GCCATATTTTACTTA
** **
188834 AAATCAAAAATCATCTTTTAAATATGACAAGCACCGATTCTCATAAGAGACTCCATTCTTTTTGA
255 AAATCAAAAATCATCCGTTAAATATGACAAGCACCGATTCTCATAAGAGACTCCATTCTTTTCAA
* * * * *
188899 GATTAGGAACTAAGTACACATTCCGTTCATTATAATACATGACATTGATG-TTTTGTGTCACAAG
320 GATTAGGAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCACAAG
* * * * *
188963 AAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTATTTCTTAAATAACACAAACTTGA
385 AAAAGCTTTTCTTTCCACCATTTTCGACAGAATCAAAGTTTATCTCTTAAATAACACAAACATGA
* *
189028 ATAGTCACACTAATCCCCATTCATTT
450 ATACTCACACAAATCCCCATTCATTT
* *
189054 CAGGATTAGGCACCATAAACATAGTCTTCTCATCAGGATACAAGGTATTGATGCTTTAGTTTCGC
1 CAGGATTAGGCACCATAAACATAGTCTTCTCAT-AGGATACAAGGTATTGACGCTTTGGTTTCGC
* *
189119 AAAAAAAGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAGCAT
65 AAAAAAAGCTTTTTTCCCCCCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACAT
* *
189184 TGATTCTAGTAAGGATCTTCATTCATTTTATGATTAGGCACTATAAACACTTTCTCTTCATTAGG
130 AGATTCTAGTAAGGATCTTCATTCATTTTCTGATTAGGCACTATAAACACTTTCTCTTCATTAGG
*
189249 ATAAATAAAATTGATG
195 ATAAATAATATTGATG
189265 CTTTGGCTTT
Statistics
Matches: 575, Mismatches: 100, Indels: 22
0.82 0.14 0.03
Matches are distributed among these distances:
473 5 0.01
474 3 0.01
475 309 0.54
476 248 0.43
477 10 0.02
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
CAGGATTAGGCACCATAAACATAGTCTTCTCATAGGATACAAGGTATTGACGCTTTGGTTTCGCA
AAAAAAGCTTTTTTCCCCCCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACATA
GATTCTAGTAAGGATCTTCATTCATTTTCTGATTAGGCACTATAAACACTTTCTCTTCATTAGGA
TAAATAATATTGATGATTTTTGTTTGCAAAGAAACCTTTTCTTTGCCATATTTTACTTAAAATCA
AAAATCATCCGTTAAATATGACAAGCACCGATTCTCATAAGAGACTCCATTCTTTTCAAGATTAG
GAACCAAGAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCACAAGAAAAGC
TTTTCTTTCCACCATTTTCGACAGAATCAAAGTTTATCTCTTAAATAACACAAACATGAATACTC
ACACAAATCCCCATTCATTT
Found at i:189336 original size:159 final size:158
Alignment explanation
Indices: 189100--189447 Score: 430
Period size: 159 Copynumber: 2.2 Consensus size: 158
189090 GATACAAGGT
* * *
189100 ATTGATGCTTTAG-TTTCGCAAAAAAAGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGTTCAT
1 ATTGATGCTTT-GCTTTTGCAAGAAAAGCTTTCTTCCCACCAACTTTTGTAAAGTCTAAGTTCAT
* * *
189164 ACCTCAAATGAGA-CAAGCATTGATTCTAGTAAGGATCTTCATTCATTTTATGATTAGGCACTAT
65 ACCTCAAATGAGACCAA-CATGGATTCTAGTAAGGATCTTCATTCATTTTATAATTAGGCACAAT
* * *
189228 AAACACTTTCTCTTCATTAGGATAAATAAA
129 AAACACATTCACCTCATTAGGATAAATAAA
* ** * * *
189258 ATTGATGCTTTGGCTTTTGCAAGAAAGGCTTTCTTCCCACTGATTTTTGTAAAGTGTAAGTTCGT
1 ATTGATGCTTT-GCTTTTGCAAGAAAAGCTTTCTTCCCACCAACTTTTGTAAAGTCTAAGTTCAT
* * * *
189323 GCCTCAAATGAGACCAACATGGATTCTAGTAATGATCTTCATTCATTTTCTAATTAGGCACAATT
65 ACCTCAAATGAGACCAACATGGATTCTAGTAAGGATCTTCATTCATTTTATAATTAGGCACAATA
* *
189388 AACACATTCACCTCATTAGGATAAATGAT
130 AACACATTCACCTCATTAGGATAAATAAA
* * * *
189417 ATTGATGATTTTCTTTTGCATGAAAATCTTT
1 ATTGATGCTTTGCTTTTGCAAGAAAAGCTTT
189448 TCTTTGCCCT
Statistics
Matches: 161, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
158 28 0.17
159 130 0.81
160 3 0.02
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.37
Consensus pattern (158 bp):
ATTGATGCTTTGCTTTTGCAAGAAAAGCTTTCTTCCCACCAACTTTTGTAAAGTCTAAGTTCATA
CCTCAAATGAGACCAACATGGATTCTAGTAAGGATCTTCATTCATTTTATAATTAGGCACAATAA
ACACATTCACCTCATTAGGATAAATAAA
Found at i:189395 original size:475 final size:471
Alignment explanation
Indices: 188104--189423 Score: 1337
Period size: 475 Copynumber: 2.8 Consensus size: 471
188094 AAAAAGAATG
* * *
188104 CAGGATTAGGCGCCATAAGCATAGTTTTCTCATTAGGATACAAGGTATTGACGCTTTGGTTTCGC
1 CAGGATTAGGCACCATAAACATAGTCTTCTCA-TAGGATACAAGGTATTGACGCTTTGGTTTCGC
* * * * *
188169 -AAGAAAGGTTTTTTCCCCCCAACTTTTGTAAAGTCTAACTTCATTCCTTAAATGAGACAAACAT
65 AAAAAAAGCTTTTTTCCCCCCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACAT
* * ** * **
188233 GGACTCTAGTAAGGATCTTCATTCATTTTGCGATTAGACACTATAAACACTTTCTCCGCATTAGG
130 AGATTCTAGTAAGGATCTTCATTCATTTTATGATTAGGCACTATAAACACTTTCTCTTCATTAGG
* * * * *
188298 ATAAATGATATTGATGATTTTTGTTTGCATGGAAATCTTTTCTTTGCCA-TATTTTACTTAAAAT
195 ATAAATAATATTGATGATTTAT-TTTGCA-AGAAACCTTTTC-TTCCCACTATTTT-CTTAAAAT
* ** *
188362 CAAAATTCATCCGTTAAATATGACAAGCATCGATTCTCGTTTTAGAGTC-T-ATTCTTTTCAAGA
256 CAAAATTCATCC-TTAAATATGACAAGCATCGATTCTAGTAAT-GAGTCTTCATTCTTTTCTAGA
* * * *
188425 TTTGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
319 TTAGGAA-CAATAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCACAAGAA
* ** * * * * *
188490 AAGGTTTTCTTTCCACTGTTTTCGACAGAATTAAAGTTTCTCTCTTAATTAAGACAAACATGGAT
383 AAGCTTTTCTTTCCACCATTTTCGACAGAATCAAAGTTTATCTCTTAAATAACACAAACATGAAT
* * **
188555 ACTTATACAAATCCCCATTTTTTT
448 ACTCACACAAATCCCCATTCATTT
* * * * *
188579 CAGGATTAGGAACCATAAACATAGTCTTCTTAGTAGGACAGACAA--TATTAACGCTTTGGTATC
1 CAGGATTAGGCACCATAAACATAGTCTTCTCA-TAGG--ATACAAGGTATTGACGCTTTGGTTTC
* * * * * * *
188642 GCAAAACAAGCTTTGTTCCCCCCAATTTTTGTAAACTGTAAGTTCGTGCCTCAAATGAGACAAAC
63 GCAAAAAAAGCTTTTTTCCCCCCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAAC
* * ** *
188707 ATAGATTCTAGTAATGG-TCTTCATTCATTTTCTGATTAGGCATTATAAACACAATCTCTTTATT
128 ATAGATTCTAGTAA-GGATCTTCATTCATTTTATGATTAGGCACTATAAACACTTTCTCTTCATT
* * ****
188771 AGGATAGATAATATTGATGATTTTATTTTGTAAAGAAACCTTTTCTTTGGTCTATTTTCCTTAAA
192 AGGATAAATAATATTGATGA-TTTATTTTG-CAAGAAACCTTTTCTTCCCACTATTTT-CTTAAA
* * * * *
188836 ATCAAAAATCATCTTTTAAATATGACAAGCACCGATTCTCA-TAA-GAGACTCCATTCTTTT-TG
254 ATCAAAATTCATC-CTTAAATATGACAAGCATCGATTCT-AGTAATGAGTCTTCATTCTTTTCT-
* * *
188898 AGATTAGGAACTAAGT-ACACATTCCGTTCATTATAATACATGACATTGATG-TTTTGTGTCACA
316 AGATTAGGAAC-AA-TAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCACA
* * * * *
188961 AGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTATTTCTTAAATAACACAAACTT
379 AGAAAAGCTTTTCTTTCCACCATTTTCGACAGAATCAAAGTTTATCTCTTAAATAACACAAACAT
* *
189026 GAATAGTCACACTAATCCCCATTCATTT
444 GAATACTCACACAAATCCCCATTCATTT
* *
189054 CAGGATTAGGCACCATAAACATAGTCTTCTCATCAGGATACAAGGTATTGATGCTTTAGTTTCGC
1 CAGGATTAGGCACCATAAACATAGTCTTCTCAT-AGGATACAAGGTATTGACGCTTTGGTTTCGC
* *
189119 AAAAAAAGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAGCAT
65 AAAAAAAGCTTTTTTCCCCCCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACAT
*
189184 TGATTCTAGTAAGGATCTTCATTCATTTTATGATTAGGCACTATAAACACTTTCTCTTCATTAGG
130 AGATTCTAGTAAGGATCTTCATTCATTTTATGATTAGGCACTATAAACACTTTCTCTTCATTAGG
* * * * *
189249 ATAAATAAAATTGATGCTTTGGCTTTTGCAAGAAAGGC-TTTCTTCCCACTGATTTT-TGTAAAG
195 ATAAATAATATTGATGATTT--ATTTTGCAAGAAA-CCTTTTCTTCCCACT-ATTTTCT-TAAAA
** * * * *
189312 TGTAAGTTCGTGCCTCAAATGA-GACCAA-CATGGATTCTAGTAATGA-TCTTCATTCATTTTCT
255 TCAAAATTCAT-CCTTAAAT-ATGA-CAAGCATCGATTCTAGTAATGAGTCTTCATTC-TTTTCT
* * * *
189374 A-ATTAGGCACAATTAACACATTCACC-TCATTAGGATAAATGATATTGATG
316 AGATTAGGAACAA-TAACACATTC-CCTTCATTAGAATACATGACATTGATG
189424 ATTTTCTTTT
Statistics
Matches: 685, Mismatches: 128, Indels: 64
0.78 0.15 0.07
Matches are distributed among these distances:
473 5 0.01
474 15 0.02
475 396 0.58
476 256 0.37
477 13 0.02
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (471 bp):
CAGGATTAGGCACCATAAACATAGTCTTCTCATAGGATACAAGGTATTGACGCTTTGGTTTCGCA
AAAAAAGCTTTTTTCCCCCCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACATA
GATTCTAGTAAGGATCTTCATTCATTTTATGATTAGGCACTATAAACACTTTCTCTTCATTAGGA
TAAATAATATTGATGATTTATTTTGCAAGAAACCTTTTCTTCCCACTATTTTCTTAAAATCAAAA
TTCATCCTTAAATATGACAAGCATCGATTCTAGTAATGAGTCTTCATTCTTTTCTAGATTAGGAA
CAATAACACATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTT
CTTTCCACCATTTTCGACAGAATCAAAGTTTATCTCTTAAATAACACAAACATGAATACTCACAC
AAATCCCCATTCATTT
Found at i:189542 original size:634 final size:632
Alignment explanation
Indices: 188666--189880 Score: 1666
Period size: 634 Copynumber: 1.9 Consensus size: 632
188656 GTTCCCCCCA
*
188666 ATTTTTGTAAACTGTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGGTCTTCAT
1 ATTTTTGTAAACTGTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCAT
* ** * * * *
188731 TCATTTTCTGATTAGGCATTATAAACACAATCTCTTTATTAGGATAGATAATATTGATGATTTTA
66 TCATTTTCTAATTAGGCACAATAAACACAATCACCTCATTAGGATAAATAATATTGATGATTTTA
* ** ** *
188796 TTTTGTAAAGAAACCTTTTCTTTGGTCTATTTTCCTTAAAATCAAAAATCATCTTTTAAATATGA
131 TTTTGCAAAGAAACCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAAATCATCCCTTAAAAATGA
* * * * *
188861 CAAGCACCGATTCTCATAAGAGACTCCATTCTTTTTGAGATTAGGAACTAAGTACACATTC-CGT
196 CAAGCACCGATTCTCATAAGAGACTCCACTATTTTCGAGATTAGGAACTAAGAACACATTCAC-C
* * * * *
188925 TCATTATAATACATGACATTGATG-TTTTGTGTCACAAGAAAAGCTTTTCTTTTCACCATTTTTG
260 TCATTACAATACATAACATTGATGCTTTAGTCTCACAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * ** * *
188989 ATAGAATCAAAGTTTATTTCTTAAATAACACAAACTTGAATAGTCACACTAATCCCCATTCATTT
325 ATAGAATCAAAATCTACCTCTTAAAT---ACAAACATAAATAGTCACACTAATCCCCATTCATTT
* *
189054 CAGGATT-AGGCACCATAAACATAGTCTTCTCATCAGGATACAAGGTATTGATGCTTTAGTTTCG
387 CAGGATTCA-GCACCATAAACATAGTCTTCTCATAAGGATACAAGATATTGATGCTTTAGTTTCG
* * * * *
189118 CAAAAAAAGCTTTTTTCCCACCAACTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAGCA
451 CAAAAAAAGCTTTTTTCCCACAAACTTTTGTAAAGCCTAACTCCATACCTCAAATGAGACAAACA
* * * * * *
189183 TTGATTCTAGTAAGGATCTTCATTCATTTTATGATTAGGCACTATAAACACTTTCTCTTCATTAG
516 TGGAATCTAGTAAGGATCTTCATTCATTTTATAATTAGGCACTATAAACACATTCACCTCATTAG
189248 GATAAATAAAATTGATGCTTTGGCTTTTGCAAGAAAGGCTTTCTTCCCACTG
581 GATAAATAAAATTGATGCTTTGGCTTTTGCAAGAAAGGCTTTCTTCCCACTG
* * *
189300 ATTTTTGTAAAGTGTAAGTTCGTGCCTCAAATGAGACCAACATGGATTCTAGTAATGATCTTCAT
1 ATTTTTGTAAACTGTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCAT
* * * *
189365 TCATTTTCTAATTAGGCACAATTAACACATTCACCTCATTAGGATAAATGATATTGATGATTTTC
66 TCATTTTCTAATTAGGCACAATAAACACAATCACCTCATTAGGATAAATAATATTGATGATTTTA
* * **
189430 TTTTGC-ATGAAAATCTTTTCTTTGCCCTATTTTGTTTAAAATCAAAACA-CATCCCTTAAAAAT
131 TTTTGCAAAG-AAACCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAA-ATCATCCCTTAAAAAT
* *
189493 GACAAGCATCGATTCTCATAAGAGTCTCCACTATTTTCGAGATTAGGAACTAAGAACACATTCAC
194 GACAAGCACCGATTCTCATAAGAGACTCCACTATTTTCGAGATTAGGAACTAAGAACACATTCAC
* ** *
189558 CTCATTACGATACATAACATTGATGCTTTAGTCTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTT
259 CTCATTACAATACATAACATTGATGCTTTAGTCTCACAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * *
189623 GATAGAATCAAAATCTGCCTCTTAAATACAAACATAAATAGTCATACTAATCGCCATTCTTTTCA
324 GATAGAATCAAAATCTACCTCTTAAATACAAACATAAATAGTCACACTAATCCCCATTCATTTCA
* * *
189688 GGATTCAGCACCATAAATATAGTCTTTTCATAAGGATACATGATATTGATGCTTTAGTTTCGCAA
389 GGATTCAGCACCATAAACATAGTCTTCTCATAAGGATACAAGATATTGATGCTTTAGTTTCGCAA
* * * **
189753 GAAAGGCTTTTTTCCCACAAATTTTTGTAAAGCCTAACTCCATGTCTCAAATGAGACAAACATGG
454 AAAAAGCTTTTTTCCCACAAACTTTTGTAAAGCCTAACTCCATACCTCAAATGAGACAAACATGG
* *
189818 AATCTAGTAAGGATCTTCATTCATTTTGTAATTAGGCACTATTAACACATTCACCTCATTAGG
519 AATCTAGTAAGGATCTTCATTCATTTTATAATTAGGCACTATAAACACATTCACCTCATTAGG
189881 GTTAATGATA
Statistics
Matches: 502, Mismatches: 74, Indels: 12
0.85 0.13 0.02
Matches are distributed among these distances:
632 201 0.40
633 3 0.01
634 241 0.48
635 57 0.11
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (632 bp):
ATTTTTGTAAACTGTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCAT
TCATTTTCTAATTAGGCACAATAAACACAATCACCTCATTAGGATAAATAATATTGATGATTTTA
TTTTGCAAAGAAACCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAAATCATCCCTTAAAAATGA
CAAGCACCGATTCTCATAAGAGACTCCACTATTTTCGAGATTAGGAACTAAGAACACATTCACCT
CATTACAATACATAACATTGATGCTTTAGTCTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGA
TAGAATCAAAATCTACCTCTTAAATACAAACATAAATAGTCACACTAATCCCCATTCATTTCAGG
ATTCAGCACCATAAACATAGTCTTCTCATAAGGATACAAGATATTGATGCTTTAGTTTCGCAAAA
AAAGCTTTTTTCCCACAAACTTTTGTAAAGCCTAACTCCATACCTCAAATGAGACAAACATGGAA
TCTAGTAAGGATCTTCATTCATTTTATAATTAGGCACTATAAACACATTCACCTCATTAGGATAA
ATAAAATTGATGCTTTGGCTTTTGCAAGAAAGGCTTTCTTCCCACTG
Found at i:190806 original size:158 final size:159
Alignment explanation
Indices: 190644--190975 Score: 449
Period size: 159 Copynumber: 2.1 Consensus size: 159
190634 ACATAGTCTT
** * * * * *
190644 CTCATTAGGATACAA-GGTATTGATGCTTTGG-TTCCGGAGGAAAGGCTTTTTTCTCACCAACTT
1 CTCATTAGGATA-AATGAAATTAATGCTTTGGTTTCCGCAAGAAAGGCTTTCTTCCCACCAACTT
* *
190707 TTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACCTGGATTCTAGTAAGGATCTTCATTCAT
65 TTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAGTAAGGATCTTCATTCAT
190772 TTTGTAATTAGGCGCTATAAACACTTTCTC
130 TTTGTAATTAGGCGCTATAAACACTTTCTC
* * *
190802 CTCATTAGGATAAATGAAATTAATGCTTTGGTTTTCGCAAGAAAGGCTTTCTTCCCACCGATTTT
1 CTCATTAGGATAAATGAAATTAATGCTTTGGTTTCCGCAAGAAAGGCTTTCTTCCCACCAACTTT
* *
190867 TGTAAAGTCTAAGTTCATGCCTCACATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATT
66 TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAGTAAGGATCTTCATTCATT
* *
190932 TTGTAATTA---GCTAGTAAACACATTCAC
131 TTGTAATTAGGCGCTA-TAAACACTTTCTC
* *
190959 CTTATTATGATAAATGA
1 CTCATTAGGATAAATGA
190976 TAGTGATGAT
Statistics
Matches: 153, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
156 4 0.03
157 28 0.18
158 25 0.16
159 96 0.63
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.35
Consensus pattern (159 bp):
CTCATTAGGATAAATGAAATTAATGCTTTGGTTTCCGCAAGAAAGGCTTTCTTCCCACCAACTTT
TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAGTAAGGATCTTCATTCATT
TTGTAATTAGGCGCTATAAACACTTTCTC
Done.