genome.fa.s1905.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1905
Parameters: 2 7 7 80 10 50 1000
Length:  79352

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2415--2440	13	2.0	13	100	0	52	30	15	15	38	1.88
4741--4778	20	1.9	20	100	0	76	31	18	10	39	1.85
4743--4798	19	2.9	19	86	2	67	33	17	16	32	1.92
6644--6695	17	3.1	17	78	10	54	78	1	17	1	0.93
7486--8086	162	3.8	155	81	8	633	36	8	12	41	1.74
7486--8061	316	1.8	317	83	6	774	35	9	12	42	1.75
10511--10899	153	2.5	151	82	7	473	28	14	18	39	1.90
13087--13117	13	2.4	13	100	0	62	38	12	16	32	1.86
13064--13133	33	2.1	33	86	5	97	35	15	12	35	1.86
13162--13217	19	2.9	19	86	2	76	37	14	16	32	1.88
13202--13228	13	2.1	13	100	0	54	40	14	14	29	1.86
15821--15855	13	2.7	13	86	0	52	42	17	8	31	1.79
16274--16328	27	2.0	27	96	0	101	27	16	21	34	1.95
19798--19854	13	3.9	13	76	24	60	35	14	17	33	1.90
19778--19878	32	3.1	32	97	1	184	34	11	17	35	1.87
19776--19873	19	5.8	18	71	28	90	33	12	17	36	1.87
19916--19940	13	1.9	13	100	0	50	32	16	16	36	1.90
25534--25565	13	2.5	13	94	0	55	37	9	15	37	1.80
25609--25662	19	2.8	20	88	2	83	38	14	16	29	1.89
25609--25679	20	3.6	19	84	7	72	39	14	16	29	1.88
25790--25840	22	2.4	22	77	9	52	50	9	3	35	1.54
31220--31411	32	6.1	32	74	12	159	22	29	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31233--31438	31	6.6	31	81	6	190	24	29	16	29	1.97
31480--31725	27	7.9	29	78	14	144	21	33	14	30	1.93
31419--31609	95	2.0	96	88	5	289	19	34	13	32	1.91
31419--31704	34	8.8	33	76	14	256	19	33	13	32	1.91
31449--31725	60	4.4	62	82	10	321	20	32	14	31	1.93
31419--31704	129	2.2	127	85	6	396	19	33	13	32	1.91
31510--31638	69	1.9	68	95	1	231	19	34	13	33	1.90
31701--31781	28	2.8	28	80	12	76	33	25	18	22	1.97
31677--31771	29	3.3	29	82	5	113	33	30	16	18	1.94
31846--32000	39	3.8	38	73	15	139	25	25	21	27	1.99
31811--32042	86	2.7	86	88	2	338	25	25	18	29	1.98
31971--32819	101	8.4	101	91	0	1320	22	26	18	32	1.97
31981--32917	52	18.5	51	78	7	646	23	25	18	33	1.97
35751--35799	27	1.9	26	84	12	66	26	40	16	16	1.89
36580--36652	20	3.6	20	81	3	101	35	13	19	31	1.91
36598--36673	21	3.7	21	80	3	100	42	11	17	28	1.84
36580--36673	41	2.3	41	98	0	179	39	12	18	29	1.88
36712--36737	13	2.0	13	100	0	52	38	15	15	30	1.88
40799--40829	15	2.1	15	93	0	53	48	16	22	12	1.80
42909--42946	13	2.9	13	96	0	67	34	18	15	31	1.92
44739--44800	32	1.9	32	100	0	124	25	3	25	45	1.69
45422--45494	20	3.6	20	81	3	101	35	13	19	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45440--45515	21	3.7	21	80	3	100	42	11	17	28	1.84
45422--45515	41	2.3	41	98	0	179	39	12	18	29	1.88
45554--45579	13	2.0	13	100	0	52	38	15	15	30	1.88
48118--48142	13	1.9	13	100	0	50	32	16	20	32	1.94
48099--48161	32	1.9	32	87	9	92	38	19	14	28	1.90
49125--49159	16	2.2	16	89	0	52	60	11	14	14	1.60
52681--52710	13	2.3	13	100	0	60	36	13	16	33	1.88
52660--52726	33	2.0	33	91	5	109	34	19	13	32	1.91
52755--52809	19	2.8	20	86	5	85	38	14	16	30	1.89
52779--52840	33	1.9	32	87	9	90	43	16	12	27	1.84
53456--53570	55	2.1	55	95	0	203	27	17	4	50	1.65
61447--61495	20	2.5	20	90	6	73	28	20	14	36	1.92
65861--65921	21	2.9	21	82	4	70	18	21	0	60	1.36
69127--69329	79	2.6	79	82	3	221	30	16	28	25	1.96
69281--69352	28	2.6	28	88	0	99	23	19	34	22	1.96
69339--69465	52	2.5	50	79	7	146	33	11	25	29	1.91
71825--71850	13	2.0	13	100	0	52	38	15	15	30	1.88
71804--71870	33	2.0	33	88	0	98	43	16	14	25	1.86
71890--71989	19	5.9	18	73	26	103	38	15	12	35	1.84
71912--71968	13	3.9	13	76	24	60	35	15	14	35	1.88
71893--71987	32	3.0	32	98	0	181	36	15	12	34	1.86
72482--73035	55	10.0	55	85	7	696	21	19	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77800--77862	17	4.0	15	80	15	65	85	9	4	0	0.72
77812--77853	9	4.4	10	79	8	52	90	7	2	0	0.53
77812--77862	19	2.8	18	84	3	66	88	9	1	0	0.60
77800--77870	36	2.0	36	83	5	90	83	9	7	0	0.82
77800--77870	17	4.1	17	74	13	56	83	9	7	0	0.82
78898--79352	59	8.0	56	78	16	442	28	31	20	20	1.97
78901--79352	115	4.0	112	81	14	499	28	31	20	20	1.97

Tables:   1

The End!