genome.fa.s1908.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1908
Parameters: 2 7 7 80 10 50 1000
Length:  74762

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445--562	58	2.0	58	95	3	211	33	26	3	36	1.73
559--595	19	2.0	19	94	5	67	21	35	0	43	1.53
6682--6885	79	2.6	79	81	3	214	28	17	29	24	1.97
6840--6911	28	2.6	28	86	4	92	22	19	36	22	1.95
6899--7121	52	4.3	51	81	6	225	32	11	25	30	1.91
6899--7121	105	2.1	103	85	3	286	32	11	25	30	1.91
6899--7285	51	7.4	51	74	10	255	32	12	25	30	1.92
6790--7290	264	1.9	263	88	2	765	30	12	26	29	1.93
7104--7179	27	2.8	27	91	2	116	23	21	31	23	1.98
9656--9681	13	2.0	13	100	0	52	38	15	15	30	1.88
12863--12930	33	2.1	33	88	2	102	32	11	17	38	1.86
12962--13014	20	2.6	21	90	3	81	26	16	15	41	1.88
17644--17917	143	1.9	142	84	3	361	38	17	17	25	1.92
19222--19251	15	2.0	15	93	0	51	10	20	0	70	1.16
19238--19285	10	4.8	10	92	7	80	2	18	0	79	0.84
19232--19279	7	6.7	7	77	13	53	2	16	0	81	0.79
19759--19902	30	5.5	29	65	29	108	26	15	15	41	1.88
19739--19974	50	4.7	50	90	3	341	27	14	14	43	1.85
19839--19994	20	7.7	20	73	22	121	27	14	14	43	1.84
19928--19952	13	1.9	13	100	0	50	36	16	16	32	1.90
19909--19972	33	2.0	33	90	3	103	29	12	14	43	1.81
22298--22441	78	1.8	78	87	0	216	29	26	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22376--22491	51	2.3	51	83	1	142	31	25	12	31	1.92
22300--22704	130	3.1	129	84	3	499	29	26	12	32	1.92
22507--22625	51	2.3	50	81	8	125	31	26	10	31	1.90
22558--22784	79	2.9	78	79	6	242	27	26	15	30	1.96
25680--25796	51	2.3	51	86	0	153	31	13	24	29	1.94
25730--25985	79	3.2	76	79	6	278	30	12	27	29	1.93
25604--25876	130	2.1	130	83	5	338	32	13	24	29	1.93
25860--26061	107	1.9	107	81	4	246	33	13	26	26	1.94
25997--26114	51	2.3	52	78	8	125	35	11	22	31	1.89
28487--28516	13	2.3	13	100	0	60	40	13	16	30	1.87
29211--29631	45	9.5	45	76	9	370	40	13	26	20	1.89
29257--29631	134	2.8	134	88	1	547	40	12	26	20	1.89
29872--31433	61	25.6	59	85	4	1782	29	18	26	25	1.98
35970--36029	27	2.2	27	87	0	84	18	38	15	28	1.91
35904--36197	34	8.8	33	86	9	386	19	36	12	31	1.89
35997--36268	34	7.9	34	84	10	306	18	33	12	36	1.88
36272--36383	33	3.5	32	85	8	149	29	34	16	18	1.94
36371--37121	49	15.8	48	84	7	957	24	26	17	30	1.98
36376--37121	140	5.3	136	92	4	1001	25	26	18	30	1.98
36371--37121	189	4.0	188	89	5	1058	24	26	17	30	1.98
37134--37260	67	1.9	68	85	1	175	25	24	12	37	1.90
38072--38096	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38052--38118	33	2.0	33	88	0	98	34	11	13	40	1.81
38162--38186	13	1.9	13	100	0	50	32	16	16	36	1.90
43595--43854	79	3.3	79	84	3	337	32	15	25	26	1.95
43807--43880	28	2.6	29	91	8	118	24	20	33	21	1.97
43866--43981	51	2.3	51	84	3	153	27	12	28	31	1.92
46109--46135	13	2.1	13	100	0	54	40	14	14	29	1.86
46120--46176	20	2.8	20	91	0	96	42	15	17	24	1.88
49212--49276	28	2.4	27	80	14	71	63	6	1	29	1.28
49623--49653	2	15.5	2	100	0	62	51	0	0	48	1.00
51080--51132	26	2.1	25	82	10	63	11	16	5	66	1.42
51633--51799	83	2.0	83	89	2	255	43	11	17	26	1.84
52012--52045	17	1.9	18	94	5	61	38	0	14	47	1.45
52017--52097	41	2.0	41	82	4	101	32	9	14	43	1.79
54157--54324	46	3.7	46	80	1	203	39	7	5	46	1.57
55305--55339	18	2.0	18	88	5	54	40	5	17	37	1.73
57306--57626	141	2.3	139	86	2	457	44	10	9	34	1.72
57309--57685	140	2.7	141	83	5	437	44	10	10	35	1.72
58934--58958	5	5.0	5	100	0	50	80	0	0	20	0.72
59262--59724	168	2.8	166	80	7	435	49	8	11	31	1.68
61389--61487	41	2.4	42	77	17	109	24	18	20	37	1.94

Tables:   1

The End!