Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold191
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 842153
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 45129 characters in sequence are not A, C, G, or T
File 1 of 6
Found at i:2212 original size:13 final size:13
Alignment explanation
Indices: 2194--2219 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2184 CAATTTTTTG
2194 TGTATCGATACAT
1 TGTATCGATACAT
2207 TGTATCGATACAT
1 TGTATCGATACAT
2220 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7524 original size:20 final size:20
Alignment explanation
Indices: 7499--7550 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
7489 ATTTGAAGCA
* *
7499 ATGTATCGATACAATTTATC
1 ATGTATCGATACAATGTACC
7519 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
7539 ATGTATCGATAC
1 ATGTATCGATAC
7551 GAACAGTGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:7731 original size:28 final size:28
Alignment explanation
Indices: 7691--7744 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
7681 AGTCAACCAC
*
7691 AATGTATCGATACAAGTACCTATGTAAT
1 AATGTATCGATACAAATACCTATGTAAT
7719 AATGTATCGATACAAATACCTATGTA
1 AATGTATCGATACAAATACCTATGTA
7745 TCGATACTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (28 bp):
AATGTATCGATACAAATACCTATGTAAT
Found at i:8241 original size:20 final size:22
Alignment explanation
Indices: 8213--8265 Score: 65
Period size: 20 Copynumber: 2.5 Consensus size: 22
8203 AATTAAGGCT
*
8213 TTTGTTAAAAAAAAAT-T-CCC
1 TTTGATAAAAAAAAATCTCCCC
*
8233 TTTGATAAAAAAAATTCTCCCC
1 TTTGATAAAAAAAAATCTCCCC
*
8255 CTTGATAAAAA
1 TTTGATAAAAA
8266 TTTATTTTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 14 0.50
21 1 0.04
22 13 0.46
ACGTcount: A:0.45, C:0.17, G:0.06, T:0.32
Consensus pattern (22 bp):
TTTGATAAAAAAAAATCTCCCC
Found at i:8259 original size:22 final size:20
Alignment explanation
Indices: 8218--8265 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
8208 AGGCTTTTGT
*
8218 TAAAAAAAAATTCCCTTTGA
1 TAAAAAAAAATTCCCCTTGA
*
8238 TAAAAAAAATTCTCCCCCTTGA
1 TAAAAAAAAAT-T-CCCCTTGA
8260 TAAAAA
1 TAAAAA
8266 TTTATTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 10 0.42
21 1 0.04
22 13 0.54
ACGTcount: A:0.50, C:0.19, G:0.04, T:0.27
Consensus pattern (20 bp):
TAAAAAAAAATTCCCCTTGA
Found at i:9239 original size:15 final size:15
Alignment explanation
Indices: 9219--9248 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
9209 AAATGGAGGG
9219 AGTAAGGATCAAGTC
1 AGTAAGGATCAAGTC
9234 AGTAAGGATCAAGTC
1 AGTAAGGATCAAGTC
9249 TTAACCCATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.27, T:0.20
Consensus pattern (15 bp):
AGTAAGGATCAAGTC
Found at i:10019 original size:22 final size:21
Alignment explanation
Indices: 9984--10033 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
9974 TTTGTTGATG
*
9984 ATTTTG-A-TGAAAAATGAAGT
1 ATTTTGAAGTGAAAAAT-AAGA
10004 ATTTTGAAGTGAAAAATAAGA
1 ATTTTGAAGTGAAAAATAAGA
*
10025 ACTTTGAAG
1 ATTTTGAAG
10034 AAGATTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 12 0.46
22 8 0.31
ACGTcount: A:0.46, C:0.02, G:0.20, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAATAAGA
Found at i:10030 original size:21 final size:22
Alignment explanation
Indices: 9991--10033 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
9981 ATGATTTTGA
* *
9991 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAACTTTGAAG
10013 TGAAAAAT-AAGAACTTTGAAG
1 TGAAAAATGAAGAACTTTGAAG
10034 AAGATTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.49, C:0.02, G:0.21, T:0.28
Consensus pattern (22 bp):
TGAAAAATGAAGAACTTTGAAG
Found at i:16319 original size:13 final size:13
Alignment explanation
Indices: 16303--16327 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16293 CAATTTATCA
16303 TGTATCGATACAT
1 TGTATCGATACAT
16316 TGTATCGATACA
1 TGTATCGATACA
16328 ATGTTCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:16320 original size:33 final size:33
Alignment explanation
Indices: 16283--16347 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
16273 TTTGAAGCAA
*
16283 TGTATCGATACAAT-TTATCATGTATCGATACAT
1 TGTATCGATACAATGTT-CCATGTATCGATACAT
16316 TGTATCGATACAATGTTCCATGTATCGATACA
1 TGTATCGATACAATGTTCCATGTATCGATACA
16348 ATAGTGGTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (33 bp):
TGTATCGATACAATGTTCCATGTATCGATACAT
Found at i:16414 original size:13 final size:13
Alignment explanation
Indices: 16396--16422 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16386 TACAATGAAC
16396 ATGTATCGATACA
1 ATGTATCGATACA
16409 ATGTATCGATACA
1 ATGTATCGATACA
16422 A
1 A
16423 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:16796 original size:19 final size:21
Alignment explanation
Indices: 16751--16823 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
16741 AGGGTGGTTT
*
16751 TGTATCGATACATTT--TAGCC
1 TGTATCGATACATTTACTA-TC
16771 ATGTATCGATACA-TTACT-TC
1 -TGTATCGATACATTTACTATC
* *
16791 TGTATCGATATATTTACTATT
1 TGTATCGATACATTTACTATC
*
16812 TGTATTGATACA
1 TGTATCGATACA
16824 AATTGTAACA
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
19 11 0.26
20 8 0.19
21 23 0.53
22 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (21 bp):
TGTATCGATACATTTACTATC
Found at i:17468 original size:48 final size:48
Alignment explanation
Indices: 17405--17746 Score: 291
Period size: 48 Copynumber: 7.4 Consensus size: 48
17395 TGTTTGACTT
*
17405 CTAG-CAAACTCTTTTCATCCCTCGTTTCACTGTATTGGTGTTAGGGC
1 CTAGTCAAACTCTTTTCATCCCTCGTTTGACTGTATTGGTGTTAGGGC
* * * *
17452 CTAGTCAAACTTTTTTCTTCCATCGTTTGAC--TA-------TA---T
1 CTAGTCAAACTCTTTTCATCCCTCGTTTGACTGTATTGGTGTTAGGGC
* * * * * *
17488 CTAGTTAAACTTTTTTCATCCTTTGTTTAACTGTATTGGTGTTAGGTC
1 CTAGTCAAACTCTTTTCATCCCTCGTTTGACTGTATTGGTGTTAGGGC
* * * * *
17536 CTGGTCAAACTCTTTTCATTCCTCATTTGATTGTATTGGTGTTAGCGC
1 CTAGTCAAACTCTTTTCATCCCTCGTTTGACTGTATTGGTGTTAGGGC
* * *
17584 CTAGTCAAACTCTTTTGATCCCTCATTTGACAGTATTGGTGTTAGGGC
1 CTAGTCAAACTCTTTTCATCCCTCGTTTGACTGTATTGGTGTTAGGGC
* * * * * *
17632 CTGGTCAAACTCTTTTCATCTCTTGTTTGACTATATTAGTGTTAGAGC
1 CTAGTCAAACTCTTTTCATCCCTCGTTTGACTGTATTGGTGTTAGGGC
** * * *
17680 CTAGTCAAACTCTTTTCATCCCTTATTTGACTATATTGGTATTAGGAC
1 CTAGTCAAACTCTTTTCATCCCTCGTTTGACTGTATTGGTGTTAGGGC
17728 CT-GATCAAACT-TTTCTCAT
1 CTAG-TCAAACTCTTT-TCAT
17747 TTCTATCTGA
Statistics
Matches: 236, Mismatches: 44, Indels: 29
0.76 0.14 0.09
Matches are distributed among these distances:
36 26 0.11
38 2 0.01
39 2 0.01
45 2 0.01
46 2 0.01
47 8 0.03
48 194 0.82
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.43
Consensus pattern (48 bp):
CTAGTCAAACTCTTTTCATCCCTCGTTTGACTGTATTGGTGTTAGGGC
Found at i:17526 original size:84 final size:84
Alignment explanation
Indices: 17410--17565 Score: 224
Period size: 84 Copynumber: 1.9 Consensus size: 84
17400 GACTTCTAGC
* *
17410 AAACTCTTTTCATCCCTCGTTTCACTGTATTGGTGTTAGGGCCTAGTCAAACTTTTTTC-TTCCA
1 AAACTCTTTTCATCCCTCGTTTAACTGTATTGGTGTTAGGGCCTAGTCAAACTCTTTTCATTCC-
*
17474 TCGTTTGACTATATCTAGTT
65 TCATTTGACTATATCTAGTT
* * * * *
17494 AAACTTTTTTCATCCTTTGTTTAACTGTATTGGTGTTAGGTCCTGGTCAAACTCTTTTCATTCCT
1 AAACTCTTTTCATCCCTCGTTTAACTGTATTGGTGTTAGGGCCTAGTCAAACTCTTTTCATTCCT
17559 CATTTGA
66 CATTTGA
17566 TTGTATTGGT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
84 59 0.94
85 4 0.06
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (84 bp):
AAACTCTTTTCATCCCTCGTTTAACTGTATTGGTGTTAGGGCCTAGTCAAACTCTTTTCATTCCT
CATTTGACTATATCTAGTT
Found at i:17847 original size:44 final size:44
Alignment explanation
Indices: 17727--18676 Score: 516
Period size: 44 Copynumber: 22.2 Consensus size: 44
17717 GGTATTAGGA
* * *
17727 CCTGATCAAACTTTTCTCATTTCT-ATCTGACGTATGGTTACCAC
1 CCTGGTCAAACTTTTTTCATTT-TGATTTGACGTATGGTTACCAC
* * *
17771 TCTCGTCAGA---TTTT--TTTTG-TTTGACGTATGGTTACCAC
1 CCTGGTCAAACTTTTTTCATTTTGATTTGACGTATGGTTACCAC
* * * *
17809 CCTGGTCAAACTTTTTTCATTTTAATCTAACATATGGTTACCAC
1 CCTGGTCAAACTTTTTTCATTTTGATTTGACGTATGGTTACCAC
* * *
17853 CCTAGTTAAA----TTT--TTTTG-TTTTACGTATGGTTACCAC
1 CCTGGTCAAACTTTTTTCATTTTGATTTGACGTATGGTTACCAC
* ** * *
17890 CCTGATCAAACTTTTCCCATTTCT-ATCTGATGTATGGTTACCAC
1 CCTGGTCAAACTTTTTTCATTT-TGATTTGACGTATGGTTACCAC
* * *
17934 CCTAGCCAGA-TTCTTTTCATTTTGATTTGACGTATGGTTACCAC
1 CCTGGTCAAACTT-TTTTCATTTTGATTTGACGTATGGTTACCAC
* * * *
17978 CTTGGTCAAATCCGTTTTT-GTTCTG-TTTGACGTATGGTTACCAC
1 CCTGGTCAAA--CTTTTTTCATTTTGATTTGACGTATGGTTACCAC
* * * *
18022 CCTAGTCAAAC--TTTTC-TTTCCT-ATCTAACGTATGGTTGCCAC
1 CCTGGTCAAACTTTTTTCATTT--TGATTTGACGTATGGTTACCAC
* * ** *
18064 CTTGGTCAGA-TTCTTTTCATTCAGATTTGACTTATGGTTACCAC
1 CCTGGTCAAACTT-TTTTCATTTTGATTTGACGTATGGTTACCAC
* ** * * * *
18108 CCTAGTCAAATCTGCCTTT-GTTCTG-TTTGACGTATAGTTACTAC
1 CCTGGTCAAA-CT-TTTTTCATTTTGATTTGACGTATGGTTACCAC
* * * * * *
18152 CCTAGTCAAACTTTTCTCATTTCGATCTAACGTATGGTTACGAC
1 CCTGGTCAAACTTTTTTCATTTTGATTTGACGTATGGTTACCAC
** * * *
18196 CCTCATCAGA---TTTT--TTTTG-TTTGATGTATTGTTACCAC
1 CCTGGTCAAACTTTTTTCATTTTGATTTGACGTATGGTTACCAC
*
18234 CCTGGTCAAACTTTTCTCATTTTGATTTGACGTATGGTTACCAC
1 CCTGGTCAAACTTTTTTCATTTTGATTTGACGTATGGTTACCAC
* * * * * * *
18278 CTTCGTCAGA----TTT--TTTTG-GTTGACATATAGTTATCAC
1 CCTGGTCAAACTTTTTTCATTTTGATTTGACGTATGGTTACCAC
* * * *
18315 CTTGGTCAAACTTTTCTCATTTCGATTTGACATATGGTTACCAC
1 CCTGGTCAAACTTTTTTCATTTTGATTTGACGTATGGTTACCAC
* * * * * *
18359 CTTGGTCAAACTTTTCTCATTTCGATCTGATGTTTGGTTACCAC
1 CCTGGTCAAACTTTTTTCATTTTGATTTGACGTATGGTTACCAC
* * * *
18403 CTTGGTCAGA-TTCTTTTTATTTTGATTTGATGTATGGTTACCAC
1 CCTGGTCAAACTT-TTTTCATTTTGATTTGACGTATGGTTACCAC
* * *
18447 CTTGGTCAAA-TCTATCTCTATTTTGA-TTGACGTATGGTTACCAC
1 CCTGGTCAAACT-TTTTTC-ATTTTGATTTGACGTATGGTTACCAC
* ** * *
18491 CCTAGTCAAACTTTTCCCATTTT-AGTTTGATGTATGGTTATCAC
1 CCTGGTCAAACTTTTTTCATTTTGA-TTTGACGTATGGTTACCAC
* * * * * *
18535 CCTAGTTAGA-TTCTTTTCATTTTGATTTGATGTATGCTTACAAC
1 CCTGGTCAAACTT-TTTTCATTTTGATTTGACGTATGGTTACCAC
* * * ** * *
18579 CTTAGTCAAA--TCTACCCTTTCCTG-TTTGACATATGGTTACCAC
1 CCTGGTCAAACTTTTTTCATTT--TGATTTGACGTATGGTTACCAC
* * * * *
18622 CCTAGTTAGATTTTTTTCATTCTGATTTGACGTATGGTTACCAC
1 CCTGGTCAAACTTTTTTCATTTTGATTTGACGTATGGTTACCAC
*
18666 CCTAGTCAAAC
1 CCTGGTCAAAC
18677 CTTTGTAACC
Statistics
Matches: 687, Mismatches: 159, Indels: 120
0.71 0.16 0.12
Matches are distributed among these distances:
37 46 0.07
38 56 0.08
39 7 0.01
40 11 0.02
41 16 0.02
42 33 0.05
43 58 0.08
44 426 0.62
45 25 0.04
46 8 0.01
47 1 0.00
ACGTcount: A:0.21, C:0.22, G:0.15, T:0.42
Consensus pattern (44 bp):
CCTGGTCAAACTTTTTTCATTTTGATTTGACGTATGGTTACCAC
Found at i:18023 original size:169 final size:163
Alignment explanation
Indices: 17727--18373 Score: 474
Period size: 163 Copynumber: 3.9 Consensus size: 163
17717 GGTATTAGGA
* * * *
17727 CCTGATCAAACTTTTCTCATTTCTATCTGACGTATGGTTACCACTCTCGTCAGATTTTTTTTGTT
1 CCTGATCAAACTTTTCCCATTTCTATCTGACGTATGGTTACCACCCTAGCCAGATTTTTTTTGTT
* *
17792 TGACGTATGGTTACCACCCTGGTCAAACTTTTTTCATTTTAATCTAACATATGGTTACCACCCTA
66 TGACGTATGGTTACCACCCTGGTCAAACGTTTTTCATTCTAATCTAACATATGGTTACCACCCTA
* *
17857 GTTAAATTTTTTTGTTTTACGTATGGTTACCAC
131 GTCAAACTTTTTTGTTTTACGTATGGTTACCAC
*
17890 CCTGATCAAACTTTTCCCATTTCTATCTGATGTATGGTTACCACCCTAGCCAGATTCTTTTCATT
1 CCTGATCAAACTTTTCCCATTTCTATCTGACGTATGGTTACCACCCTAGCCAGA---TTTT--TT
* * * * * *
17955 TTGATTTGACGTATGGTTACCACCTTGGTCAAATCCGTTTTT-GTTCT-GTTTGACGTATGGTTA
61 TTG-TTTGACGTATGGTTACCACCCTGGTCAAA--CGTTTTTCATTCTAATCTAACATATGGTTA
*
18018 CCACCCTAGTCAAACTTTTCTT-TCCTATCTAACGTATGGTTGCCAC
123 CCACCCTAGTCAAACTTTT-TTGT--T-T-T-ACGTATGGTTACCAC
* * * * * * * *
18064 CTTGGTCAGATTCTTTT--CA-TTCAGATTTGACTTATGGTTACCACCCTAGTCAAATCTGCCTT
1 CCTGATCA-A-ACTTTTCCCATTTC-TATCTGACGTATGGTTACCACCCTAGCCAGAT-T---TT
* * * * *
18126 TGTTCTGTTTGACGTATAGTTACTACCCTAGTCAAAC-TTTTCTCATT-TCGATCTAACGTATGG
59 T-TT-TGTTTGACGTATGGTTACCACCCTGGTCAAACGTTTT-TCATTCT-AATCTAACATATGG
* ** * * *
18189 TTACGACCCTCA-TCAGATTTTTTTTGTTTGATGTATTGTTACCAC
120 TTACCACCCT-AGTCA-AACTTTTTTGTTTTACGTATGGTTACCAC
* * * * * * *
18234 CCTGGTCAAACTTTTCTCATTT-TGATTTGACGTATGGTTACCACCTTCGTCAGA-TTTTTTTGG
1 CCTGATCAAACTTTTCCCATTTCT-ATCTGACGTATGGTTACCACCCTAGCCAGATTTTTTTTGT
* * * * * * *
18297 TTGACATATAGTTATCACCTTGGTCAAAC-TTTTCTCATT-TCGATTTGACATATGGTTACCACC
65 TTGACGTATGGTTACCACCCTGGTCAAACGTTTT-TCATTCT-AATCTAACATATGGTTACCACC
* *
18360 TTGGTCAAACTTTT
128 CTAGTCAAACTTTT
18374 CTCATTTCGA
Statistics
Matches: 388, Mismatches: 61, Indels: 71
0.75 0.12 0.14
Matches are distributed among these distances:
162 5 0.01
163 109 0.28
164 2 0.01
165 3 0.01
166 4 0.01
168 11 0.03
169 59 0.15
170 52 0.13
171 14 0.04
172 6 0.02
173 8 0.02
174 98 0.25
175 12 0.03
176 5 0.01
ACGTcount: A:0.21, C:0.22, G:0.14, T:0.42
Consensus pattern (163 bp):
CCTGATCAAACTTTTCCCATTTCTATCTGACGTATGGTTACCACCCTAGCCAGATTTTTTTTGTT
TGACGTATGGTTACCACCCTGGTCAAACGTTTTTCATTCTAATCTAACATATGGTTACCACCCTA
GTCAAACTTTTTTGTTTTACGTATGGTTACCAC
Found at i:18084 original size:130 final size:129
Alignment explanation
Indices: 17754--18198 Score: 412
Period size: 130 Copynumber: 3.5 Consensus size: 129
17744 CATTTCTATC
* * * * * * * *
17754 TGACGTATGGTTACCACTCTCGTCAGA-TTTT-TTT-TGTTTGACGTATGGTTACCACCCTGGTC
1 TGACGTATGGTTACCACCCTAGTCAAACTTTTCTTTCTATCTAACGTATGGTTACCACCCTAGCC
* * * * * *
17816 AAACTT-TTTTCATTTTA-ATCTAACATATGGTTACCACCCTAGTTAAAT-----TTT-TT-TGT
66 AGA-TTCTTTTCA-TTCAGATTTGACGTATGGTTACCACCCTAGTCAAATCCGCCTTTGTTCTGT
17872 T
129 T
* * *
17873 TTACGTATGGTTACCACCCT-GATCAAACTTTTCCCATTTCTATCTGATGTATGGTTACCACCCT
1 TGACGTATGGTTACCACCCTAG-TCAAACTTTT--C-TTTCTATCTAACGTATGGTTACCACCCT
** * * **
17937 AGCCAGATTCTTTTCATTTTGATTTGACGTATGGTTACCACCTTGGTCAAATCCGTTTTTGTTCT
62 AGCCAGATTCTTTTCATTCAGATTTGACGTATGGTTACCACCCTAGTCAAATCCGCCTTTGTTCT
18002 GTT
127 GTT
* * * *
18005 TGACGTATGGTTACCACCCTAGTCAAACTTTTCTTTCCTATCTAACGTATGGTTGCCACCTTGGT
1 TGACGTATGGTTACCACCCTAGTCAAACTTTTCTTT-CTATCTAACGTATGGTTACCACCCTAGC
* *
18070 CAGATTCTTTTCATTCAGATTTGACTTATGGTTACCACCCTAGTCAAATCTGCCTTTGTTCTGTT
65 CAGATTCTTTTCATTCAGATTTGACGTATGGTTACCACCCTAGTCAAATCCGCCTTTGTTCTGTT
* * * *
18135 TGACGTATAGTTACTACCCTAGTCAAACTTTTCTCATTTCGATCTAACGTATGGTTACGACCCT
1 TGACGTATGGTTACCACCCTAGTCAAAC-TTT-TC-TTTCTATCTAACGTATGGTTACCACCCT
18199 CATCAGATTT
Statistics
Matches: 268, Mismatches: 37, Indels: 29
0.80 0.11 0.09
Matches are distributed among these distances:
118 1 0.00
119 22 0.08
120 4 0.01
124 8 0.03
125 56 0.21
129 3 0.01
130 109 0.41
131 5 0.02
132 56 0.21
133 4 0.01
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (129 bp):
TGACGTATGGTTACCACCCTAGTCAAACTTTTCTTTCTATCTAACGTATGGTTACCACCCTAGCC
AGATTCTTTTCATTCAGATTTGACGTATGGTTACCACCCTAGTCAAATCCGCCTTTGTTCTGTT
Found at i:18607 original size:87 final size:87
Alignment explanation
Indices: 18473--18675 Score: 248
Period size: 87 Copynumber: 2.3 Consensus size: 87
18463 TCTATTTTGA
* * * * ** *
18473 TTGACGTATGGTTACCACCCTAGTCAAACTTTTCCCATTT--TAGTTTGATGTATGGTTATCACC
1 TTGACGTATGCTTACAACCCTAGTCAAA-TCTACCC-TTTCCT-GTTTGACATATGGTTACCACC
*
18536 CTAGTTAGATTCTTTTCATTTTGAT
63 CTAGTTAGATTCTTTTCATTCTGAT
* *
18561 TTGATGTATGCTTACAACCTTAGTCAAATCTACCCTTTCCTGTTTGACATATGGTTACCACCCTA
1 TTGACGTATGCTTACAACCCTAGTCAAATCTACCCTTTCCTGTTTGACATATGGTTACCACCCTA
*
18626 GTTAGATTTTTTTCATTCTGAT
66 GTTAGATTCTTTTCATTCTGAT
* *
18648 TTGACGTATGGTTACCACCCTAGTCAAA
1 TTGACGTATGCTTACAACCCTAGTCAAA
18676 CCTTTGTAAC
Statistics
Matches: 98, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
86 3 0.03
87 70 0.71
88 25 0.26
ACGTcount: A:0.23, C:0.21, G:0.14, T:0.41
Consensus pattern (87 bp):
TTGACGTATGCTTACAACCCTAGTCAAATCTACCCTTTCCTGTTTGACATATGGTTACCACCCTA
GTTAGATTCTTTTCATTCTGAT
Found at i:18638 original size:425 final size:425
Alignment explanation
Indices: 17732--18676 Score: 957
Period size: 425 Copynumber: 2.2 Consensus size: 425
17722 TAGGACCTGA
* * * * *
17732 TCAAACTTTTCTCATTTCTATCTGACGTATGGTTACCACTCTCGTCAGATTTTTTTTGTTTGACG
1 TCAAACTCTACTCATTTCGATCTGACGTATGGTTACCACCCTAGTCAGATTTTTTTTGTTTGACG
* *
17797 TATGGTTACCACCCTGGTCAAACTTTTTTCATTTTAATCTAACATATGGTTACCACCCTAGTTAA
66 TATGGTTACCACCCTGGTCAAACTTTTCTCATTTTAATCTAACATATGGTTACCACCCTAGTCAA
* * * * * **
17862 ATTTTTTTGTTTTACGTATGGTTACCACCCTGATCAAACTTTTCCCATTTCTATCTGATGTATGG
131 ATTTTTTTGGTTGACATATAGTTACCACCCTGATCAAACTTTTCCCATTTCGATCTGACATATGG
* * * *
17927 TTACCACCCTAGCCAGATTCTTTTCATTTTGATTTGACGTATGGTTACCACCTTGGTCAAATCCG
196 TTACCACCCTAGCCAAATTCTTCTCATTTCGATCTGACGTATGGTTACCACCTTGGTCAAATCCG
* *
17992 TTTTTGTTCTGTTTGACGTATGGTTACCACCCTAGTCAAACTTTTCTTTCCTATCTAACGTATGG
261 TTTTTATTCTGTTTGACGTATGGTTACCACCCTAGTCAAACTTCTCTTTCCTATCTAACGTATGG
* * * *
18057 TTGCCACCTTGGTCAGATTCTTTTCATTCAGATTTGACTTATGGTTACCACCCTAGTCAAATCTG
326 TTACCACCCTAGTCAGATACTTTTCATTCAGATTTGACTTATGGTTACCACCCTAGTCAAATCTG
* *
18122 CCTTTGTTCTGTTTGACGTATAGTTACTACCCTAG
391 CCTTTATTCTGTTTGACGTATAGTTACAACCCTAG
* * * * *
18157 TCAAACTTTTCTCATTTCGATCTAACGTATGGTTACGACCCTCA-TCAGATTTTTTTTGTTTGAT
1 TCAAACTCTACTCATTTCGATCTGACGTATGGTTACCACCCT-AGTCAGATTTTTTTTGTTTGAC
* * * * * * *
18221 GTATTGTTACCACCCTGGTCAAACTTTTCTCATTTTGATTTGACGTATGGTTACCACCTTCGTCA
65 GTATGGTTACCACCCTGGTCAAACTTTTCTCATTTTAATCTAACATATGGTTACCACCCTAGTCA
* * * * * *
18286 GATTTTTTTGGTTGACATATAGTTATCACCTTGGTCAAACTTTTCTCATTTCGATTTGACATATG
130 AATTTTTTTGGTTGACATATAGTTACCACCCTGATCAAACTTTTCCCATTTCGATCTGACATATG
* * * * * * *
18351 GTTACCACCTTGGTCAAACTT-TTCTCATTTCGATCTGATGTTTGGTTACCACCTTGGTCAGATT
195 GTTACCACCCTAGCCAAA-TTCTTCTCATTTCGATCTGACGTATGGTTACCACCTTGGTCAAATC
* * * * * *
18415 C-TTTTTATTTTGATTTGATGTATGGTTACCACCTTGGTCAAATCTATCTCTATT-TTGAT-TGA
259 CGTTTTTATTCTG-TTTGACGTATGGTTACCACCCTAGTCAAA-CT-TCTCT-TTCCT-ATCTAA
* *
18477 CGTATGGTTACCACCCTAGTCA-A-ACTTTTCCCATTTTAG-TTTGA-TGTATGGTTATCACCCT
319 CGTATGGTTACCACCCTAGTCAGATACTTTT--CA-TTCAGATTTGACT-TATGGTTACCACCCT
* * * * * *
18538 AGTTAGAT-T-CTTTTCATTTTGATTTGATGTAT-GCTTACAACCTTAG
380 AGTCAAATCTGCCTTT-ATTCTG-TTTGACGTATAG-TTACAACCCTAG
* * * *
18584 TCAAA-TCTAC-CCTTTCCTG-TTTGACATATGGTTACCACCCTAGTTAGATTTTTTTCATTCTG
1 TCAAACTCTACTCATTT-C-GATCTGACGTATGGTTACCACCCTAGTCAGA--TTTTT--TT-TG
*
18646 ATTTGACGTATGGTTACCACCCTAGTCAAAC
59 -TTTGACGTATGGTTACCACCCTGGTCAAAC
18677 CTTTGTAACC
Statistics
Matches: 425, Mismatches: 72, Indels: 39
0.79 0.13 0.07
Matches are distributed among these distances:
424 9 0.02
425 256 0.60
426 38 0.09
427 78 0.18
428 13 0.03
430 2 0.00
431 2 0.00
432 27 0.06
ACGTcount: A:0.21, C:0.22, G:0.14, T:0.43
Consensus pattern (425 bp):
TCAAACTCTACTCATTTCGATCTGACGTATGGTTACCACCCTAGTCAGATTTTTTTTGTTTGACG
TATGGTTACCACCCTGGTCAAACTTTTCTCATTTTAATCTAACATATGGTTACCACCCTAGTCAA
ATTTTTTTGGTTGACATATAGTTACCACCCTGATCAAACTTTTCCCATTTCGATCTGACATATGG
TTACCACCCTAGCCAAATTCTTCTCATTTCGATCTGACGTATGGTTACCACCTTGGTCAAATCCG
TTTTTATTCTGTTTGACGTATGGTTACCACCCTAGTCAAACTTCTCTTTCCTATCTAACGTATGG
TTACCACCCTAGTCAGATACTTTTCATTCAGATTTGACTTATGGTTACCACCCTAGTCAAATCTG
CCTTTATTCTGTTTGACGTATAGTTACAACCCTAG
Found at i:18749 original size:101 final size:101
Alignment explanation
Indices: 18629--18816 Score: 288
Period size: 101 Copynumber: 1.9 Consensus size: 101
18619 CACCCTAGTT
* * *
18629 AGATTTTTTTCATTCTGATTTGACGTATGGTTACCACCCTA-GTCAAACCTTTGTAACCCTTTGA
1 AGATTATTTTCATTCTGATTTGACGTATGGTTACCACCC-AGGTCAAACCCTTATAACCCTTTGA
* *
18693 CTAACCTTTTAGCTGATTGACTTTATCAGTTTTGCTC
65 CTAACCTTTTAACTGATGGACTTTATCAGTTTTGCTC
* * *
18730 AGATTATTTTCATTTTGATTTGACGTATGGTTACCACCCAGGTCAAACCCTTATAATCTTTTGAC
1 AGATTATTTTCATTCTGATTTGACGTATGGTTACCACCCAGGTCAAACCCTTATAACCCTTTGAC
18795 TAACCTTTTAACTGATGGACTT
66 TAACCTTTTAACTGATGGACTT
18817 CATTGGTTTT
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
100 1 0.01
101 77 0.99
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (101 bp):
AGATTATTTTCATTCTGATTTGACGTATGGTTACCACCCAGGTCAAACCCTTATAACCCTTTGAC
TAACCTTTTAACTGATGGACTTTATCAGTTTTGCTC
Found at i:18946 original size:42 final size:42
Alignment explanation
Indices: 18887--21006 Score: 1712
Period size: 42 Copynumber: 50.9 Consensus size: 42
18877 AATGCTTTTA
* *
18887 ACTTCTTTACATTTAGTCTGCCTGTCAGCTTTGACCTTGGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * * *
18929 ACTTCTTTATCTTTAGTCTGCTTGTCGACTTTAACCCTAGAA
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * *
18971 ACTTCCTAACCTTTAGTCTGCTTGTCGGCTTTGACCCTAGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * * * *
19013 ACTTCTTAACCTTTAGTTTGCCTATTGGCTTTAAACTTGAAA
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
*** * * * *
19055 ACTTCCAAACTTTTAGTCTACCTATCGGTTTTGACCTT-GAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * *
19096 ACTTCCTAACTTTTAGTCTGCTTGCCTGCTTTGACCTTGGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * *
19138 ACTTCCTTACCGTTGGTCTGCCTATCGGTTTTGACCCT-GAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* *
19179 ACTTCCTAACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * * *
19221 ACTTTTTTACCCTTAGTTTACTTGTCGGCTTTGACTTTGGAA
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * *
19263 ACTTTTTTACCTTTAGTCTACCTGTTGGCTTTGACCATGGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * *
19305 ACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCCTAGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * * * *
19347 ACTTCTTAACCTTTAGTTTGCCTATTGGCTTTAAACTTGAAA
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
*** * * *
19389 ACTTCCAAACTTTTAGTCTACCTGTCGGTTTTGACCTT-GAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * *
19430 ACTTCCTAACTTTTAGTCTGCTTGCCTGCTTTGACCTTGGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * *
19472 ACTTCCTTACCGTTGGTCTGCCTATCGGTTTTGACCCT-GAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * *
19513 ACTTCCTAACCTTTAGTCTGCTTGTCGGCTTTGACCTTGGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * * *
19555 ACTTTTTTACCCTTAGTTTACTTGTCGGCTTTGACTTTGGAA
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * *
19597 ACTTTTTTACCTTTAGTCTACCTGTTGGCTTTGACCATGGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * *
19639 ACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCCTAGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * * * *
19681 ACTTCTTAACCTTTAGTTTGCCTATTGGCTTTAAACTTGAAA
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
*** * * * *
19723 ACTTCCAAACTTTTAGTCTACTTGTCGGTTTTGACCTT-GAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * *
19764 ACTTCCTAACTTTTAGTCTGCTTGTCTGCTTTGACCTTGGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * *
19806 ACTTCCTTACCGTTGGTCTGCCTATCGGTTTTGACCTT-GAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* *
19847 ACTTCCTAACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * * *
19889 ACTTTTTTACCCTTAGTTTACTTGTCGGCTTTGACTTTGGAA
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * *
19931 ACTTTTTTACCTTTAGTCTACCTGTTGGCTTTGACCATGGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * *
19973 ACTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCCTAGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
*** * *
20015 ACTTCAACACCTTTAGTCT-CCATGTCGGCTTTGACCATAGAG
1 ACTTCTTTACCTTTAGTCTGCC-TGTCGGCTTTGACCTTGGAG
* * *
20057 ACTTCTTTACCTTTAGTTTGCCTATCGGCTTTGACCTTGGAA
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * * *
20099 ACTTCCTGACCTCTAGTCTGCATGTCAGCTTTGACCCTAGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * ** * *
20141 ACTTCTTAACCTTTAGTTTGTATATCGGCTTTGACCCTGGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * *
20183 ACTTC-CTAGCATTTACTATGCATATCGGCTTTGACCTTGGAG
1 ACTTCTTTA-CCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * * *
20225 GCTTCTTAACCTTTAGTTTGCCTTTCAGCTTTGACCCTGAAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * *
20267 A-TTTTCTTACTTTTAGTCTGCCTGTTGACTTTGACTTTGGAG
1 ACTTCT-TTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * *
20309 ACTTCCTAACTTTTAGTTTGCCTGTTGGCTTTGACCTTAGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * * *
20351 ACTTCCTAACCTTTAGTCTACCTATCGACTTTGACCTTAGAA
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * *
20393 ACTT-TCTTACCTTTAGTTTGCCTATCGGGTTTGA-CTCTAGAG
1 ACTTCT-TTACCTTTAGTCTGCCTGTCGGCTTTGACCT-TGGAG
* * *
20435 ACTTTTTTGCGC-TTAGTCTGCCTATCGGCTTTGACCTTGGAG
1 ACTTCTTTAC-CTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
*** * * *
20477 ACTTCCAAACCTTTAGTTTGCCTGTCGGCTTTGACCCTAGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * *
20519 ACTTCTTTGCCCTTAGTCTGCCTATCGGCTTTGATCTTGGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
*** *
20561 ACTTCCAAACCTTTAG--T--CTGTCGACTTTGACCTTGGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * *
20599 ACTTCTTAACGTTTAGTCTGCCTATCGACTTTGACCCTAGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * * *
20641 ACTTCCTAACCTTTAGTTTGCCTATCGGCTTTGACCCTAGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
**
20683 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGAGTTTGGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * *
20725 ACTTCTTAACCTTTAGTCTACCTTTCGGCTTTGATCTTGGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
*
20767 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGAAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * *
20809 ACTTCCTTACCTCTAGTTTGCCTGTCGGCTTTGAGCTTGGA-
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * * **
20850 A--GC---ACCTCTAGTCTACTTGTTAGCTTTGACCTTGGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* *
20887 ACTTCTTTACCTTTAGTCTGCCTATCGGCTTTG-CCTTTAGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACC-TTGGAG
* * * *
20929 ACTTTTTTACCTTTAGTTTGCCTATTGGCTTTGACCTTGGAG
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
* * * *
20971 ACTTCCTTACCTTTAGTCTACTTGTCGGTTTTGACC
1 ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACC
21007 CGAGAGACTT
Statistics
Matches: 1658, Mismatches: 390, Indels: 60
0.79 0.19 0.03
Matches are distributed among these distances:
36 27 0.02
37 1 0.00
38 31 0.02
39 2 0.00
40 2 0.00
41 216 0.13
42 1368 0.83
43 11 0.01
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (42 bp):
ACTTCTTTACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAG
Found at i:19523 original size:334 final size:334
Alignment explanation
Indices: 18909--21016 Score: 2328
Period size: 334 Copynumber: 6.3 Consensus size: 334
18899 TTAGTCTGCC
* * * * * * * * * * * *
18909 TGTCAGCTTTGACCTTGGAGACTTCTTTATCTTTAGTCTGCTTGTCGACTTTAACCCTAGAAACT
1 TGTCGGCTTTGACTTTGGAAACTTTTTTACCTTTAGTCTGCCTGTTGGCTTTGACCATGGAGACT
* *
18974 TCCTAACCTTTAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTAACCTTTAGTTTGCCTATT
66 TCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTAACCTTTAGTCTGCCTATT
*
19039 GGCTTTAAACTTGAAAACTTCCAAACTTTTAGTCTACCTATCGGTTTTGACCTTGAGACTTCCTA
131 GGCTTTAAACTTGAAAACTTCCAAACCTTTAGTCTACCTATCGGTTTTGACCTTGAGACTTCCTA
* * *
19104 ACTTTTAGTCTGCTTGCCTGCTTTGACCTTGGAGACTTCCTTACCGTTGGTCTGCCTATCGGTTT
196 ACTTTTAGTCTGCTTGTCTGCTTTGACCTTGGAGACTTCCTTACCGTTAGTCTGCCTATCGGCTT
*
19169 TGACCCTGAGACTTCCTAACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTTTTACCCT
261 TGACCCTGAGACTTCCTAACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTTTACCCT
19234 TAGTTTACT
326 TAGTTTACT
*
19243 TGTCGGCTTTGACTTTGGAAACTTTTTTACCTTTAGTCTACCTGTTGGCTTTGACCATGGAGACT
1 TGTCGGCTTTGACTTTGGAAACTTTTTTACCTTTAGTCTGCCTGTTGGCTTTGACCATGGAGACT
*
19308 TCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTAACCTTTAGTTTGCCTATT
66 TCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTAACCTTTAGTCTGCCTATT
* *
19373 GGCTTTAAACTTGAAAACTTCCAAACTTTTAGTCTACCTGTCGGTTTTGACCTTGAGACTTCCTA
131 GGCTTTAAACTTGAAAACTTCCAAACCTTTAGTCTACCTATCGGTTTTGACCTTGAGACTTCCTA
* * *
19438 ACTTTTAGTCTGCTTGCCTGCTTTGACCTTGGAGACTTCCTTACCGTTGGTCTGCCTATCGGTTT
196 ACTTTTAGTCTGCTTGTCTGCTTTGACCTTGGAGACTTCCTTACCGTTAGTCTGCCTATCGGCTT
* *
19503 TGACCCTGAGACTTCCTAACCTTTAGTCTGCTTGTCGGCTTTGACCTTGGAGACTTTTTTACCCT
261 TGACCCTGAGACTTCCTAACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTTTACCCT
19568 TAGTTTACT
326 TAGTTTACT
*
19577 TGTCGGCTTTGACTTTGGAAACTTTTTTACCTTTAGTCTACCTGTTGGCTTTGACCATGGAGACT
1 TGTCGGCTTTGACTTTGGAAACTTTTTTACCTTTAGTCTGCCTGTTGGCTTTGACCATGGAGACT
*
19642 TCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTAACCTTTAGTTTGCCTATT
66 TCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTAACCTTTAGTCTGCCTATT
* * *
19707 GGCTTTAAACTTGAAAACTTCCAAACTTTTAGTCTACTTGTCGGTTTTGACCTTGAGACTTCCTA
131 GGCTTTAAACTTGAAAACTTCCAAACCTTTAGTCTACCTATCGGTTTTGACCTTGAGACTTCCTA
* *
19772 ACTTTTAGTCTGCTTGTCTGCTTTGACCTTGGAGACTTCCTTACCGTTGGTCTGCCTATCGGTTT
196 ACTTTTAGTCTGCTTGTCTGCTTTGACCTTGGAGACTTCCTTACCGTTAGTCTGCCTATCGGCTT
* *
19837 TGACCTTGAGACTTCCTAACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTTTTTACCCT
261 TGACCCTGAGACTTCCTAACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTTTACCCT
19902 TAGTTTACT
326 TAGTTTACT
*
19911 TGTCGGCTTTGACTTTGGAAACTTTTTTACCTTTAGTCTACCTGTTGGCTTTGACCATGGAGACT
1 TGTCGGCTTTGACTTTGGAAACTTTTTTACCTTTAGTCTGCCTGTTGGCTTTGACCATGGAGACT
*
19976 TCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTC-AACACCTTTAGTCT-CC-AT
66 TCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTA-ACCTTTAGTCTGCCTAT
* * * * *** * * * *
20038 GTCGGCTTTGACCAT-AGAGACTTCTTTACCTTTAGTTTGCCTATCGGCTTTGACCTTGGAAACT
130 -T-GGCTTTAAACTTGA-AAACTTCCAAACCTTTAGTCTACCTATCGGTTTTGACCTT-GAGACT
* * * * * * * * * **
20102 TCCTGACCTCTAGTCTGCATGTCAGCTTTGACCCTAGAGACTT-CTTAACCTTTAGTTTGTATAT
191 TCCTAACTTTTAGTCTGCTTGTCTGCTTTGACCTTGGAGACTTCCTT-ACCGTTAGTCTGCCTAT
* * * * * * *
20166 CGGCTTTGACCCTGGAGACTTCCTAGCATTTACTATGCATATCGGCTTTGACCTTGGAGGCTTCT
255 CGGCTTTGACCCT-GAGACTTCCTAACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCT
* * *
20231 TAACCTTTAGTTTGCCT
319 TTACCCTTAGTTT-ACT
* ** * * **
20248 T-TCAGCTTTGACCCT-GAAGA-TTTTCTTACTTTTAGTCTGCCTGTTGACTTTGACTTTGGAGA
1 TGTCGGCTTTGACTTTGGAA-ACTTTT-TTACCTTTAGTCTGCCTGTTGGCTTTGACCATGGAGA
* * * * * * * *
20310 CTTCCTAACTTTTAGTTTGCCTGTTGGCTTTGACCTTAGAGACTTCCTAACCTTTAGTCTACCTA
64 CTTCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTAACCTTTAGTCTGCCTA
* * * * * ** * * * *
20375 TCGACTTTGACCTT-AGAAACTTTCTTACCTTTAGTTTGCCTATCGGGTTTGACTCTAGAGACTT
129 TTGGCTTTAAACTTGA-AAACTTCCAAACCTTTAGTCTACCTATCGGTTTTGAC-CTTGAGACTT
** ** ** * * * ** * * *
20439 TTTTGCGCTTAGTCTGCCTATCGGCTTTGACCTTGGAGACTTCCAAACCTTTAGTTTGCCTGTCG
192 CCTAACTTTTAGTCTGCTTGTCTGCTTTGACCTTGGAGACTTCCTTACCGTTAGTCTGCCTATCG
* ** * * * ***
20504 GCTTTGACCCTAGAGACTTCTTTGCCCTTAGTCTGCCTATCGGCTTTGATCTTGGAGACTTCCAA
257 GCTTTGACCCT-GAGACTTCCTAACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTTT
*
20569 ACCTTTAG--T-C-
321 ACCCTTAGTTTACT
* * * * * * * * * * *
20579 TGTCGACTTTGACCTTGGAGACTTCTTAACGTTTAGTCTGCCTATCGACTTTGACCCTAGAGACT
1 TGTCGGCTTTGACTTTGGAAACTTTTTTACCTTTAGTCTGCCTGTTGGCTTTGACCATGGAGACT
* * * * * * *
20644 TCCTAACCTTTAGTTTGCCTATCGGCTTTGACCCTAGAGACTTCTTTACCTTTAGTCTGCCTGTC
66 TCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTAACCTTTAGTCTGCCTATT
* ** * * ** * * * *
20709 GGCTTTGAGTTTGGAGACTTCTTAACCTTTAGTCTACCTTTCGGCTTTGATCTTGGAGACTTCTT
131 GGCTTTAAACTTGAAAACTTCCAAACCTTTAGTCTACCTATCGGTTTTGACCTT-GAGACTTCCT
* * * * * * *
20774 TACCTTTAGTCTGCCTGTCGGCTTTGACCTTGAAGACTTCCTTACC-TCTAGTTTGCCTGTCGGC
195 AACTTTTAGTCTGCTTGTCTGCTTTGACCTTGGAGACTTCCTTACCGT-TAGTCTGCCTATCGGC
* * ** * * * **
20838 TTTGAGCTTG-GA--AGC--ACCTCTAGTCTACTTGTTAGCTTTGACCTTGGAGACTTCTTTACC
259 TTTGACCCTGAGACTTCCTAACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTTTACC
* * * *
20898 TTTAGTCTGCC
324 CTTAGTTTACT
* * * * * * *
20909 TATCGGCTTTGCCTTTAGAGACTTTTTTACCTTTAGTTTGCCTATTGGCTTTGACCTTGGAGACT
1 TGTCGGCTTTGACTTTGGAAACTTTTTTACCTTTAGTCTGCCTGTTGGCTTTGACCATGGAGACT
* * *
20974 TCCTTACCTTTAGTCTACTTGTCGGTTTTGACCCGAGAGACTT
66 TCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCCTAGAGACTT
21017 TTTTTCCCAT
Statistics
Matches: 1556, Mismatches: 193, Indels: 54
0.86 0.11 0.03
Matches are distributed among these distances:
326 38 0.02
328 1 0.00
329 1 0.00
330 90 0.06
331 5 0.00
332 212 0.14
333 10 0.01
334 810 0.52
335 71 0.05
336 307 0.20
337 9 0.01
338 2 0.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (334 bp):
TGTCGGCTTTGACTTTGGAAACTTTTTTACCTTTAGTCTGCCTGTTGGCTTTGACCATGGAGACT
TCCTTACCTTTAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTAACCTTTAGTCTGCCTATT
GGCTTTAAACTTGAAAACTTCCAAACCTTTAGTCTACCTATCGGTTTTGACCTTGAGACTTCCTA
ACTTTTAGTCTGCTTGTCTGCTTTGACCTTGGAGACTTCCTTACCGTTAGTCTGCCTATCGGCTT
TGACCCTGAGACTTCCTAACCTTTAGTCTGCCTGTCGGCTTTGACCTTGGAGACTTCTTTACCCT
TAGTTTACT
Found at i:21567 original size:3 final size:3
Alignment explanation
Indices: 21554--21591 Score: 67
Period size: 3 Copynumber: 12.3 Consensus size: 3
21544 TCGGTTTATT
21554 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
21592 TGAAAAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:21820 original size:17 final size:17
Alignment explanation
Indices: 21795--21837 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
21785 AAAAGAAAAA
* *
21795 TCATACATTTCATGCCT
1 TCATGCATTTCATACCT
21812 TCATGCATTTCATACCT
1 TCATGCATTTCATACCT
21829 TCATGCATT
1 TCATGCATT
21838 GATTATTTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.23, C:0.28, G:0.07, T:0.42
Consensus pattern (17 bp):
TCATGCATTTCATACCT
Found at i:22489 original size:28 final size:28
Alignment explanation
Indices: 22458--22519 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
22448 AACAAAAAAT
22458 AAAAACTAGCAAACAGAAAAGAAAAAGA
1 AAAAACTAGCAAACAGAAAAGAAAAAGA
* **
22486 AAAAACTAGCAAATAGAAAATTAAAAGA
1 AAAAACTAGCAAACAGAAAAGAAAAAGA
*
22514 AGAAAC
1 AAAAAC
22520 GAGTAGCCGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.69, C:0.10, G:0.13, T:0.08
Consensus pattern (28 bp):
AAAAACTAGCAAACAGAAAAGAAAAAGA
Found at i:26611 original size:52 final size:52
Alignment explanation
Indices: 26541--26661 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
26531 GAAAATTTAT
*
26541 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
26593 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
26645 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
26662 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:26674 original size:52 final size:51
Alignment explanation
Indices: 26541--26681 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
26531 GAAAATTTAT
26541 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
26593 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
26645 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
26682 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:26688 original size:13 final size:13
Alignment explanation
Indices: 26670--26694 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26660 CAAAGATCAG
26670 TGTATCGATACAA
1 TGTATCGATACAA
26683 TGTATCGATACA
1 TGTATCGATACA
26695 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:26777 original size:13 final size:13
Alignment explanation
Indices: 26759--26783 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26749 CAAAAAAATA
26759 TGTATCGATACAT
1 TGTATCGATACAT
26772 TGTATCGATACA
1 TGTATCGATACA
26784 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:26779 original size:33 final size:33
Alignment explanation
Indices: 26737--26803 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
26727 AGTAGCTTAA
26737 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
26770 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
26803 A
1 A
26804 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:27787 original size:49 final size:49
Alignment explanation
Indices: 27641--27798 Score: 147
Period size: 49 Copynumber: 3.1 Consensus size: 49
27631 AAAAGTGATA
* * * * *
27641 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--G
* ** * * *
27692 AAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG
1 ---AA-GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
27745 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA-ATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
*
27793 ATGATG
1 AAGATG
27799 AGAAAAGTGA
Statistics
Matches: 85, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
48 8 0.09
49 37 0.44
50 2 0.02
53 1 0.01
54 2 0.02
55 35 0.41
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (49 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
Found at i:27858 original size:170 final size:171
Alignment explanation
Indices: 27570--27963 Score: 700
Period size: 170 Copynumber: 2.3 Consensus size: 171
27560 TTTTAGAGAT
*
27570 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
1 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
27635 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGA
66 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGA
27700 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
131 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
* *
27741 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA-ATGATGATGAGAAAA
1 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
*
27805 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGA
66 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGA
27870 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
131 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
* *
27911 GATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 GAT-GAAGA--TGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAG
27964 GTGCCAATGT
Statistics
Matches: 213, Mismatches: 6, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
170 122 0.57
171 51 0.24
173 40 0.19
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (171 bp):
GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGA
TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
Found at i:27982 original size:43 final size:43
Alignment explanation
Indices: 27921--28004 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
27911 GATGGAAAAT
*
27921 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
*
27964 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
1 GTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAA
28005 GGCCAGCGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (43 bp):
GTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
Found at i:28006 original size:21 final size:21
Alignment explanation
Indices: 27982--28025 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
27972 GTGCTGATTC
*
27982 AAGGCCAGCTACATTGGACTT
1 AAGGCCAGCGACATTGGACTT
*
28003 AAGGCCAGCGATATTGGACTT
1 AAGGCCAGCGACATTGGACTT
28024 AA
1 AA
28026 AGGTGCCAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (21 bp):
AAGGCCAGCGACATTGGACTT
Found at i:28040 original size:64 final size:64
Alignment explanation
Indices: 27939--28066 Score: 238
Period size: 64 Copynumber: 2.0 Consensus size: 64
27929 ATGCTGATTC
* *
27939 AAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTT
28003 AAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTT
1 AAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTT
28067 CAAGATGAAG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (64 bp):
AAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTT
Found at i:28101 original size:49 final size:49
Alignment explanation
Indices: 28025--28416 Score: 568
Period size: 49 Copynumber: 7.9 Consensus size: 49
28015 ATTGGACTTA
* *
28025 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTCAAGATG
1 AAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
* * * *
28074 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
28123 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
* * * *
28172 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
28221 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
1 AAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G
* *
28271 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
1 --AAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
28322 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
1 AAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G
* * *
28372 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 --AAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTA
28417 GAAGGGTTGC
Statistics
Matches: 306, Mismatches: 31, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
49 219 0.72
50 2 0.01
51 1 0.00
52 84 0.27
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.24
Consensus pattern (49 bp):
AAGGTGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
Found at i:28170 original size:98 final size:100
Alignment explanation
Indices: 28003--28416 Score: 686
Period size: 98 Copynumber: 4.2 Consensus size: 100
27993 CATTGGACTT
28003 AAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTG
1 AAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTG
*
28062 GACTTCAAGAT-G-AAGATGCCAATATGCTGATTC
66 GACTTAAAGATGGAAAGATGCCAATATGCTGATTC
28095 AAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTG
1 AAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTG
28160 GACTTAAAGAT-G-AAGATGCCAATATGCTGATTC
66 GACTTAAAGATGGAAAGATGCCAATATGCTGATTC
28193 AAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTG
1 AAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTG
*
28258 GACTTAAAGATGGAAAAGGTGCCAATATGCTGATTC
66 GACTTAAAGATGG-AAAGATGCCAATATGCTGATTC
*
28294 AAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTG
1 AAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTG
*
28359 GACTTAAAGATGGAAAAGGTGCCAATATGCTGATTC
66 GACTTAAAGATGG-AAAGATGCCAATATGCTGATTC
* *
28395 AAGGCCAGCTATATTGGGCTTA
1 AAGGCCAGCGATATTGGACTTA
28417 GAAGGGTTGC
Statistics
Matches: 309, Mismatches: 4, Indels: 9
0.96 0.01 0.03
Matches are distributed among these distances:
92 21 0.07
96 1 0.00
98 145 0.47
99 1 0.00
101 141 0.46
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.24
Consensus pattern (100 bp):
AAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTG
GACTTAAAGATGGAAAGATGCCAATATGCTGATTC
Found at i:28485 original size:34 final size:34
Alignment explanation
Indices: 28416--28481 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 34
28406 TATTGGGCTT
28416 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTGGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTGGA
28450 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTGG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTGG
28482 GAAGGAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 28 0.88
34 4 0.12
ACGTcount: A:0.17, C:0.18, G:0.38, T:0.27
Consensus pattern (34 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTGGA
Found at i:28559 original size:34 final size:34
Alignment explanation
Indices: 28488--29788 Score: 1046
Period size: 34 Copynumber: 40.0 Consensus size: 34
28478 TTGGGAAGGA
*
28488 AAAAAGA-TGCCACGGAGTTGTGGAC-TTAAAAGGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA--G
28522 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
28556 -AAAA-AGTGCCACGGAGTTGTGGGCTTTGAAAAGGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA--G
* *
28591 AAAAAGAGTGCCACGAAGTTGTGGGCTTTAAACGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-AG
28626 AAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA-G
**
28661 AAAAAAGAGTGCCACAAAGTTGTGGGCTTTAAAAG
1 -AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
*
28696 AAGAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG
* * * *
28730 AAGAAG-GTTGCCACCGACTTGTGTGGGCTTTAGGAAGGG
1 AAAAAGAG-TGCCACGGA-GT-TGTGGGCTTTA--AA-AG
* *
28769 AGAAAGA-TGCCACGGAGTTGTGGAC-TTAAAAGGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA--G
28803 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
* *
28837 AAAAA-AGGTGCCACGGAGTTATGGAC-TTAAAGATG
1 AAAAAGA-GTGCCACGGAGTTGTGGGCTTTAAA-A-G
*
28872 AAAAA-AGTGCCACGGAGTTATGGGC-TTAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
*
28904 -----G-GTGCCACGGAGTTGTGGGC-TTAGAAGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTA-AAAG
* * *
28932 AAAAAGAGTGCCACAGAGTTGTGGGC-TTAGGAGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTA-AAAG
28966 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-----
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
28995 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-----
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
*
29024 AAAAAGAGTGCCACGGAGTCGTGGGCTTTGAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG
* *
29059 AAGAAG-GTGCCACAGAGTTGTGGGCTTTGAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG
* *
29093 AAGAAG-GTGCCACAGAGTTGTGGGCTTTGAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG
*
29127 AAGAAG-GTGCCACGGAGTTGTGGGCTTT-----
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
* *
29155 --AAAGAGTGCCATGGAGTCGTGGGCTTTGAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG
* *
29188 -AGAAGA--G-CAC-GAG-T-T--GC-TTAACAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
29212 ----A-AGTGCCACGGAGTTGTGGGCTTTAAACAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-AG
29242 AAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA--G
*
29278 AAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
29312 AAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA--G
*
29348 AAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
29382 AAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG
*
29416 AAAAAG-GTGCCACGGAGTTGTGGGC-TTAAACG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
*
29448 -----G-GTGCCACGGAGTTGTGGAC-TTAAAGATG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-A-G
* *
29477 AAAAA-AGTGCCACAGAATTGTGGGCTTTAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
*
29510 -----G-GTGCCACGGAGTTGTGGAC-TTAAAGATG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-A-G
*
29539 AAAAA-AGTGCCACGGAATTGTGGGCTTTAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
*
29572 -----G-GTGCCACGGAGTTGTGGAC-TTAAAGATG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-A-G
*
29601 AAAAA-AGTGCCACGGAATTGTGGGCTTTAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
*
29634 -----G-GTGCCACGGAGTTGTGGAC-TTAAAGATG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-A-G
*
29663 AAAAA-AGTGCCACGGAATTGTGGGCTTTAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
* *
29696 -----G-GTGCCACGAAGTTGTGGAC-TTAAAAGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-G
*
29724 AACAAG-GTGCCACGGAGTTGTGGGCTTT-AAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
* * *
29756 AAAAA-A-TGCCACTGAGTCGTGGACTTTGAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG
29789 GTATTTGAAG
Statistics
Matches: 1069, Mismatches: 74, Indels: 249
0.77 0.05 0.18
Matches are distributed among these distances:
20 1 0.00
21 1 0.00
22 1 0.00
23 3 0.00
24 7 0.01
25 3 0.00
26 6 0.01
27 86 0.08
28 76 0.07
29 65 0.06
30 5 0.00
31 20 0.02
32 34 0.03
33 111 0.10
34 386 0.36
35 95 0.09
36 59 0.06
37 95 0.09
38 10 0.01
39 5 0.00
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.21
Consensus pattern (34 bp):
AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
Found at i:28705 original size:70 final size:68
Alignment explanation
Indices: 28495--29788 Score: 674
Period size: 62 Copynumber: 19.9 Consensus size: 68
28485 GGAAAAAAGA
*
28495 TGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAA-
1 TGCCACGGAGTTGTGGGCTTTAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAG
*
28558 AAAG
65 AAGG
* *
28562 TGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGAAGTTGTGGGCTTTAAACGGA
1 TGCCACGGAGTTGTGGGCTTT-AAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-AGA
*
28627 AAAAGG
63 AGAAGG
**
28633 TGCCACGGAGTTGTGGGCTTTGAAAAGGAAAAAAGAGTGCCACAAAGTTGTGGGCTTTAAAAGAA
1 TGCCACGGAGTTGTGGGCTTT-AAAAGG-AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAA
28698 GAAGG
64 GAAGG
* * *
28703 TGCCACGGAGTTGTGGGCTTTGAAAA-GAAGAAG-GTTGCCACCGACTTGTGTGGGCTTTAGGAA
1 TGCCACGGAGTTGTGGGCTTT-AAAAGGAAAAAGAG-TGCCACGGA-GT-TGTGGGCTTTA--AA
* * *
28766 GGGAGAAAGA
60 AGAAG-AAGG
*
28776 TGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAA
1 TGCCACGGAGTTGTGGGCTTTAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG-AA
*
28840 AAAGG
64 GAAGG
* * * *
28845 TGCCACGGAGTTATGGAC-TTAAAGATGAAAAA-AGTGCCACGGAGTTATGGGC-TT--AA-AAG
1 TGCCACGGAGTTGTGGGCTTTAAA-AGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAG
28904 --GG
65 AAGG
* * * * *
28906 TGCCACGGAGTTGTGGGC-TTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGC-TTAGGAGGAAA
1 TGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTA-AAAGAAG
28969 AAGAG
65 AAG-G
28974 TGCCACGGAGTTGTGGGCTTT------AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAA-AAG-
1 TGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAGA
29030 A-G
66 AGG
* * *
29032 TGCCACGGAGTCGTGGGCTTTGAAAA-GAAGAAG-GTGCCACAGAGTTGTGGGCTTTGAAAAGAA
1 TGCCACGGAGTTGTGGGCTTT-AAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGAA
29095 GAAGG
64 GAAGG
* *
29100 TGCCACAGAGTTGTGGGCTTTGAAAA-GAAGAAG-GTGCCACGGAGTTGTGGGCTTT---A-AAG
1 TGCCACGGAGTTGTGGGCTTT-AAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAG
29159 -A-G
65 AAGG
* * * *
29161 TGCCATGGAGTCGTGGGCTTTGAAAA-G-AGAAGA--G-CAC-GAG-T-T--GC-TTAACAGAAG
1 TGCCACGGAGTTGTGGGCTTT-AAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAA-
*
29215 TGCCACGG
64 -G--AAGG
* **** *** *** ** ** * *******
29223 AGTTGTGG-GCTT-TAAACAGAAAAAGGTGCCACGGAGTTG---TGG-GCTT-TGAAAAGGGAAA
1 TGCCACGGAG-TTGTGGGCTTTAAAA-G-GAAAAAGAG-TGCCACGGAG-TTGTGGGCTTTAAAA
29281 -AAG-A-G
61 GAAGAAGG
*
29286 TGCCACAGAGTTGTGGGCTTTAAAA-GAAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGGGA
1 TGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA--GA
*
29349 AAAAGAG
63 AGAAG-G
* *
29356 TGCCACAGAGTTGTGGGCTTTAAAA-GAAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAA
1 TGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGAAG
29419 AAGG
65 AAGG
* *
29423 TGCCACGGAGTTGTGGGC-TT-AAACG-----G-GTGCCACGGAGTTGTGGAC-TTAAAGATGAA
1 TGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-A-GAA
* *
29479 AAAAG
64 GAAGG
* * *
29484 TGCCACAGAATTGTGGGCTTTAAAA-G-----G-GTGCCACGGAGTTGTGGAC-TTAAAGATGAA
1 TGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-A-GAA
* *
29541 AAAAG
64 GAAGG
* *
29546 TGCCACGGAATTGTGGGCTTTAAAA-G-----G-GTGCCACGGAGTTGTGGAC-TTAAAGATGAA
1 TGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-A-GAA
* *
29603 AAAAG
64 GAAGG
* *
29608 TGCCACGGAATTGTGGGCTTTAAAA-G-----G-GTGCCACGGAGTTGTGGAC-TTAAAGATGAA
1 TGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-A-GAA
* *
29665 AAAAG
64 GAAGG
* * * *
29670 TGCCACGGAATTGTGGGCTTTAAAA-G-----G-GTGCCACGAAGTTGTGGAC-TTAAAAGGAAC
1 TGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GAAG
29727 AAGG
65 AAGG
* * *
29731 TGCCACGGAGTTGTGGGCTTT-AAA-GAAAAA-A-TGCCACTGAGTCGTGGACTTTGAAAAG
1 TGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG
29789 GTATTTGAAG
Statistics
Matches: 1027, Mismatches: 111, Indels: 180
0.78 0.08 0.14
Matches are distributed among these distances:
52 2 0.00
53 2 0.00
55 2 0.00
56 3 0.00
57 3 0.00
58 25 0.02
59 6 0.01
60 25 0.02
61 144 0.14
62 224 0.22
63 63 0.06
64 36 0.04
65 14 0.01
66 11 0.01
67 46 0.04
68 113 0.11
69 78 0.08
70 112 0.11
71 75 0.07
72 8 0.01
73 34 0.03
74 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.21
Consensus pattern (68 bp):
TGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAGA
AGG
Found at i:28910 original size:27 final size:27
Alignment explanation
Indices: 28878--28931 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
28868 GATGAAAAAA
28878 GTGCCACGGAGTTATGGGCTTAAAAGG
1 GTGCCACGGAGTTATGGGCTTAAAAGG
* *
28905 GTGCCACGGAGTTGTGGGCTTAGAAGG
1 GTGCCACGGAGTTATGGGCTTAAAAGG
28932 AAAAAGAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.15, G:0.41, T:0.22
Consensus pattern (27 bp):
GTGCCACGGAGTTATGGGCTTAAAAGG
Found at i:28914 original size:61 final size:61
Alignment explanation
Indices: 28838--29085 Score: 179
Period size: 61 Copynumber: 4.0 Consensus size: 61
28828 CTTTAAAAGA
*
28838 AAAAAGGTGCCACGGAGTTATGGACTTA-AAGATGAAAAA-AGTGCCACGGAGTTATGGGCTT
1 AAAAAGGTGCCACGGAGTTATGGACTTAGAAG--GAAAAAGAGTGCCACAGAGTTATGGGCTT
* * * *
28899 AAAAGGGTGCCACGGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTT
1 AAAAAGGTGCCACGGAGTTATGGACTTAGAAGGAAAAAGAGTGCCACAGAGTTATGGGCTT
* * * * *
28960 AGGAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT-----TAAAAAGAGTGCCACGGAGTTGTGGG
1 ------AAAAAG-GTGCCACGGAGTTATGGACTTAGAAGGAAAAAGAGTGCCACAGAGTTATGGG
29020 CTTT
59 C-TT
** * * * * *
29024 AAAAAGAGTGCCACGGAGTCGTGGGCTTTGAAAAGAAGAAG-GTGCCACAGAGTTGTGGGCTT
1 AAAAAG-GTGCCACGGAGTTATGGACTTAG-AAGGAAAAAGAGTGCCACAGAGTTATGGGCTT
29086 TGAAAAGAAG
Statistics
Matches: 159, Mismatches: 12, Indels: 31
0.79 0.06 0.15
Matches are distributed among these distances:
58 27 0.17
60 6 0.04
61 45 0.28
62 5 0.03
63 43 0.27
64 7 0.04
67 5 0.03
68 21 0.13
ACGTcount: A:0.31, C:0.13, G:0.35, T:0.21
Consensus pattern (61 bp):
AAAAAGGTGCCACGGAGTTATGGACTTAGAAGGAAAAAGAGTGCCACAGAGTTATGGGCTT
Found at i:28936 original size:95 final size:96
Alignment explanation
Indices: 28591--29613 Score: 379
Period size: 95 Copynumber: 10.5 Consensus size: 96
28581 TTGAAAAGGG
* * * * *
28591 AAAAAGAGTGCCACGAAGTTGTGGGCTTTAAACGGAAAAAG-GTGCCACGGAGTTGTGGGCTTTG
1 AAAAAGAGTGCCACGGAGTTGTGGGC-TTAAA-AGAAAAAGAGTGCCACAGAGTTATGGAC-TT-
* ** *
28655 AAAAGGAAAAAAGAGTGCCACAAAGTTGTGGGCTTT
62 AAGAGG-AAAAAGAGTGCCACGGAGTTATGGGCTTT
* * * *
28691 AAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAG-GTTGCCACCGACTTGTGTG
1 -AAA-AAG-A-GTGCCACGGAGTTGTGGGC-TT-AAAAGAAAAAGAG-TGCCACAGA-GT-TATG
* * * * * *
28755 GGCTTTAGGAAGGGAGAAAGA-TGCCACGGAGTTGTGGACTTAAAAGGG
57 GAC-TTAAG-A-GGAAAAAGAGTGCCACGGAGTTATGGGCTT------T
*
28803 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAA-AGGTGCCACGGAGTTATGGACTTAA
1 AAAAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGAAAAAGA-GTGCCACAGAGTTATGGACTT-A
*
28867 AGATGAAAAA-AGTGCCACGGAGTTATGGGC-TT
63 AGAGGAAAAAGAGTGCCACGGAGTTATGGGCTTT
* * * * *
28899 -AAAAGGGTGCCACGGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTAGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTA-AAAGAAAAAGAGTGCCACAGAGTTATGGACTTAAG
*
28963 AGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
65 AGGAAAAAGAGTGCCACGGAGTTATGGGCTTT
* * ** *
28995 AAAAAGAGTGCCACGGAGTTGTGGGCTT----TAAAAAGAGTGCCACGGAGTCGTGGGCTTTGAA
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGAAAAAGAGTGCCACAGAGTTATGGAC-TT-AA
* * * *
29056 -AAGAAGAAG-GTGCCACAGAGTTGTGGGCTTT
64 GAGGAAAAAGAGTGCCACGGAGTTATGGGCTTT
* * * * *
29087 GAAAAGAAGAAGGTGCCACAGAGTTGTGGGCTTTGAAAAGAAGAAG-GTGCCACGGAGTTGTGGG
1 --AAA-AAG-A-GTGCCACGGAGTTGTGGGC-TT-AAAAGAAAAAGAGTGCCACAGAGTTATGGA
* * **
29151 CTT-------TAAAGAGTGCCATGGAGTCGTGGGCTTT
59 CTTAAGAGGAAAAAGAGTGCCACGGAGTTATGGGCTTT
* * * * *
29182 GAAAAGAGAAGAG-CAC-GAG-T-T--GCTTAACAG----A-AGTGCCACGGAGTTGTGGGCTTT
1 -AAAA-AG-AGTGCCACGGAGTTGTGGGCTTAAAAGAAAAAGAGTGCCACAGAGTTATGGAC-TT
* *
29236 AA-ACAGAAAAAG-GTGCCACGGAGTTGTGGGCTTT
62 AAGA-GGAAAAAGAGTGCCACGGAGTTATGGGCTTT
* * *
29270 GAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAG-GTGCCACGGAGTTGTG
1 --------AAAAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGAAAAAGAGTGCCACAGAGTTATG
* * * *
29334 GGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTT
57 GAC-TT-AAGA-GGAAAAAGAGTGCCACGGAGTTATGGGCTTT
* * * *
29377 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAG-GTGCCACGGAGTTGTGGGC
1 --AA-AAAGA-GTGCCACGGAGTTGTGGGC-TT-AAAAGAAAAAGAGTGCCACAGAGTTATGGAC
* * *
29441 TTAA-ACG-----G-GTGCCACGGAGTTGTGGACTTAAAGAT
60 TTAAGAGGAAAAAGAGTGCCACGGAGTTATGGGCTT-----T
* * * *
29476 GAAAAA-AGTGCCACAGAATTGTGGGCTTTAAAAG-----G-GTGCCACGGAGTTGTGGACTTAA
1 -AAAAAGAGTGCCACGGAGTTGTGGGC-TTAAAAGAAAAAGAGTGCCACAGAGTTATGGACTT-A
* * *
29534 AGATGAAAAA-AGTGCCACGGAATTGTGGGCTTT
63 AGAGGAAAAAGAGTGCCACGGAGTTATGGGCTTT
* *
29567 -AAAAGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAA-AGTGCCAC
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTAAA-A-GAAAAAGAGTGCCAC
29614 GGAATTGTGG
Statistics
Matches: 750, Mismatches: 77, Indels: 195
0.73 0.08 0.19
Matches are distributed among these distances:
81 20 0.03
82 2 0.00
85 4 0.01
86 2 0.00
87 2 0.00
88 20 0.03
89 35 0.05
90 20 0.03
91 7 0.01
92 48 0.06
93 15 0.02
94 55 0.07
95 120 0.16
96 32 0.04
97 48 0.06
98 4 0.01
99 3 0.00
100 7 0.01
101 8 0.01
102 29 0.04
103 50 0.07
104 84 0.11
105 20 0.03
106 28 0.04
107 55 0.07
108 25 0.03
109 1 0.00
110 3 0.00
111 3 0.00
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.21
Consensus pattern (96 bp):
AAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGAAAAAGAGTGCCACAGAGTTATGGACTTAAGA
GGAAAAAGAGTGCCACGGAGTTATGGGCTTT
Found at i:38092 original size:52 final size:52
Alignment explanation
Indices: 38022--38142 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
38012 GAAAATTTAT
*
38022 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
38074 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
38126 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
38143 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:38155 original size:52 final size:51
Alignment explanation
Indices: 38022--38162 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
38012 GAAAATTTAT
38022 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
38074 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
38126 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
38163 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:38169 original size:13 final size:13
Alignment explanation
Indices: 38151--38175 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38141 CAAAGATCAG
38151 TGTATCGATACAA
1 TGTATCGATACAA
38164 TGTATCGATACA
1 TGTATCGATACA
38176 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:38258 original size:13 final size:13
Alignment explanation
Indices: 38240--38264 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38230 CAAAAAAATA
38240 TGTATCGATACAT
1 TGTATCGATACAT
38253 TGTATCGATACA
1 TGTATCGATACA
38265 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:38260 original size:33 final size:33
Alignment explanation
Indices: 38218--38284 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
38208 AGTAGCTTAA
38218 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
38251 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
38284 A
1 A
38285 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:46333 original size:61 final size:63
Alignment explanation
Indices: 46209--46383 Score: 152
Period size: 61 Copynumber: 2.9 Consensus size: 63
46199 AAATCTTTTC
* * ** *
46209 CCAAAAGCCCACGACTCTGTGGCA-CTCTTT-CTAAAGTCCACGACTCAGTGGCATCTCTTTT
1 CCAAAAGCCCACGACTCTGTGGCATCTTTTTCCAAAAACCCACGACTCAGTGGCATCTCTCTT
*
46270 CCAAAAGCCCACGACTCTGTGGCATCTGTTTTCCAAAAACCCATGACTCTA-TGGCA-C-C-CTT
1 CCAAAAGCCCACGACTCTGTGGCATCT-TTTTCCAAAAACCCACGACTC-AGTGGCATCTCTCTT
** * * **
46331 CC-AAAGTTCACGACTCAGTGGCATCTCTTTT-C-TAAGTCCACGACTCAGTGGCA
1 CCAAAAGCCCACGACTCTGTGGCATCT-TTTTCCAAAAACCCACGACTCAGTGGCA
46384 CCGTTCCCTA
Statistics
Matches: 95, Mismatches: 14, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
57 1 0.01
58 15 0.16
59 1 0.01
60 25 0.26
61 28 0.29
62 3 0.03
63 4 0.04
64 17 0.18
65 1 0.01
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.26
Consensus pattern (63 bp):
CCAAAAGCCCACGACTCTGTGGCATCTTTTTCCAAAAACCCACGACTCAGTGGCATCTCTCTT
Found at i:46438 original size:33 final size:33
Alignment explanation
Indices: 46328--46934 Score: 425
Period size: 33 Copynumber: 19.0 Consensus size: 33
46318 CTATGGCACC
*
46328 CTTCCAAAGTTCACGACTCAGTGGCAT-CTCTTTT
1 CTTCC-AAGTCCACGACTCAGTGGCATCCT-TTTT
*
46362 C-T--AAGTCCACGACTCAGTGGCA-CC--GTT
1 CTTCCAAGTCCACGACTCAGTGGCATCCTTTTT
* * *
46389 C--CCTATGTCCAAGACTCAATGGCATCCTTTTT
1 CTTCC-AAGTCCACGACTCAGTGGCATCCTTTTT
46421 CTTCCAAGTCCACGACTCAGTGGCAT-CTTTTT
1 CTTCCAAGTCCACGACTCAGTGGCATCCTTTTT
* * *
46453 CCTCCTAAGTCCACAACTCAGTGGCATCC-TTGT
1 CTTCC-AAGTCCACGACTCAGTGGCATCCTTTTT
* *
46486 CTTTCAAAGTCCACGACTCAGTGACATCCTTTTT
1 C-TTCCAAGTCCACGACTCAGTGGCATCCTTTTT
** * *
46520 CTTTTAAGTCCACGACTTAGTGGCAT-ATCTTTT
1 CTTCCAAGTCCACGACTCAGTGGCATCCT-TTTT
* * *
46553 C--CAAAAGCCCACAACTCTA-TGGCA-CC-----
1 CTTC-CAAGTCCACGACTC-AGTGGCATCCTTTTT
*
46579 CTTCCAAAGTCCACAACTCAGTGGCAT-C-TTTT
1 CTTCC-AAGTCCACGACTCAGTGGCATCCTTTTT
* * *
46611 -TT-CAAGTCCGCGACTGAGTGGCA-CC--CTT
1 CTTCCAAGTCCACGACTCAGTGGCATCCTTTTT
*
46639 C--CCTAAGTCCACGACTCAATGGCATCCTTTTTT
1 CTTCC-AAGTCCACGACTCAGTGGCATCC-TTTTT
* **
46672 CTTCCAAGTCGACGACTCAGTACCATCC-TTTT
1 CTTCCAAGTCCACGACTCAGTGGCATCCTTTTT
* * * *
46704 CCTCCTAAGTCCATGACTTAGTGGCATCCTTTTC
1 CTTCC-AAGTCCACGACTCAGTGGCATCCTTTTT
* * * *
46738 CTTCTAAGTCCATGACTCAATGGCATCTTTTTT
1 CTTCCAAGTCCACGACTCAGTGGCATCCTTTTT
* * *
46771 CTTCTAAGTCCATGACTCAGTGGCATCC-TTTC
1 CTTCCAAGTCCACGACTCAGTGGCATCCTTTTT
* *
46803 CCTCCTAAGTCCACGACTTAGTGGCATCCTTTTT
1 CTTCC-AAGTCCACGACTCAGTGGCATCCTTTTT
*
46837 CTTCCAAGTCCACGACTCAATGGCAT-CTTTTT
1 CTTCCAAGTCCACGACTCAGTGGCATCCTTTTT
* * * *
46869 CCTTCTAAGTCCACGACTTAGTGACATCATTTTT
1 -CTTCCAAGTCCACGACTCAGTGGCATCCTTTTT
* * * * *
46903 CTTCCGAGTCCACAACTCCGTGACACCCTTTT
1 CTTCCAAGTCCACGACTCAGTGGCATCCTTTT
46935 AAGTCCACAA
Statistics
Matches: 453, Mismatches: 78, Indels: 85
0.74 0.13 0.14
Matches are distributed among these distances:
26 1 0.00
27 4 0.01
28 22 0.05
29 52 0.11
30 25 0.06
31 2 0.00
32 49 0.11
33 249 0.55
34 47 0.10
35 2 0.00
ACGTcount: A:0.21, C:0.32, G:0.14, T:0.33
Consensus pattern (33 bp):
CTTCCAAGTCCACGACTCAGTGGCATCCTTTTT
Found at i:46661 original size:29 final size:28
Alignment explanation
Indices: 46561--46667 Score: 79
Period size: 29 Copynumber: 3.8 Consensus size: 28
46551 TTCCAAAAGC
* *
46561 CCACAACTCTATGGCACCCTTCCAAAGT
1 CCACAACTCAATGGCACCCTTCCTAAGT
* * * **
46589 CCACAACTCAGTGGCATCTTTTTTCAAGT
1 CCACAACTCAATGGCACCCTTCCT-AAGT
* * * *
46618 CCGCGACTGAGTGGCACCCTTCCCTAAGT
1 CCACAACTCAATGGCACCCTT-CCTAAGT
* *
46647 CCACGACTCAATGGCATCCTT
1 CCACAACTCAATGGCACCCTT
46668 TTTTCTTCCA
Statistics
Matches: 59, Mismatches: 18, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
28 17 0.29
29 41 0.69
30 1 0.02
ACGTcount: A:0.23, C:0.36, G:0.16, T:0.25
Consensus pattern (28 bp):
CCACAACTCAATGGCACCCTTCCTAAGT
Found at i:46689 original size:251 final size:251
Alignment explanation
Indices: 46234--46796 Score: 756
Period size: 251 Copynumber: 2.2 Consensus size: 251
46224 TCTGTGGCAC
* * * *
46234 TCTTTCTAAAGTCCACGACTCAGTGGCAT-CTCTTTTC-CAAAAGCCCACGACTCT-GTGGCATC
1 TCTTTC-AAAGTCCACGACTCAGTGGCATCCT-TTTTCTTATAAGTCCACGACT-TAGTGGCATA
* ** * *
46296 TGTTTTCCAAAAACCCATGACTCTATGGCACCCTTCCAAAGTTCACGACTCAGTGGCATCTCTTT
63 TCTTTTCCAAAAACCCACAACTCTATGGCACCCTTCCAAAGTCCACAACTCAGTGGCATCTCTTT
* *
46361 TCTAAGTCCACGACTCAGTGGCACCGTTCCCTATGTCCAAGACTCAATGGCATCCTTTTTCTTCC
128 TCTAAGTCCACGACTCAGTGGCACCCTTCCCTAAGTCCAAGACTCAATGGCATCCTTTTTCTTCC
** *
46426 AAGTCCACGACTCAGTGGCATCTTTTTCCTCCTAAGTCCACAACTCAGTGGCATCCTTG
193 AAGTCCACGACTCAGTACCATCCTTTTCCTCCTAAGTCCACAACTCAGTGGCATCCTTG
* *
46485 TCTTTCAAAGTCCACGACTCAGTGACATCCTTTTTCTTTTAAGTCCACGACTTAGTGGCATATCT
1 TCTTTCAAAGTCCACGACTCAGTGGCATCCTTTTTCTTATAAGTCCACGACTTAGTGGCATATCT
* *
46550 TTTCCAAAAGCCCACAACTCTATGGCACCCTTCCAAAGTCCACAACTCAGTGGCATCTTTTTTC-
66 TTTCCAAAAACCCACAACTCTATGGCACCCTTCCAAAGTCCACAACTCAGTGGCATCTCTTTTCT
* * *
46614 AAGTCCGCGACTGAGTGGCACCCTTCCCTAAGTCCACGACTCAATGGCATCCTTTTTTCTTCCAA
131 AAGTCCACGACTCAGTGGCACCCTTCCCTAAGTCCAAGACTCAATGGCATCC-TTTTTCTTCCAA
* ** * *
46679 GTCGACGACTCAGTACCATCCTTTTCCTCCTAAGTCCATGACTTAGTGGCATCCTTT
195 GTCCACGACTCAGTACCATCCTTTTCCTCCTAAGTCCACAACTCAGTGGCATCCTTG
* * * * * * * *
46736 TCCTTCTAAGTCCATGACTCAATGGCATCTTTTTTCTTCTAAGTCCATGACTCAGTGGCAT
1 TCTTTCAAAGTCCACGACTCAGTGGCATCCTTTTTCTTATAAGTCCACGACTTAGTGGCAT
46797 CCTTTCCCTC
Statistics
Matches: 273, Mismatches: 35, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
250 74 0.27
251 199 0.73
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.31
Consensus pattern (251 bp):
TCTTTCAAAGTCCACGACTCAGTGGCATCCTTTTTCTTATAAGTCCACGACTTAGTGGCATATCT
TTTCCAAAAACCCACAACTCTATGGCACCCTTCCAAAGTCCACAACTCAGTGGCATCTCTTTTCT
AAGTCCACGACTCAGTGGCACCCTTCCCTAAGTCCAAGACTCAATGGCATCCTTTTTCTTCCAAG
TCCACGACTCAGTACCATCCTTTTCCTCCTAAGTCCACAACTCAGTGGCATCCTTG
Found at i:46974 original size:32 final size:32
Alignment explanation
Indices: 46928--47656 Score: 493
Period size: 32 Copynumber: 23.9 Consensus size: 32
46918 CTCCGTGACA
46928 CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
* * *
46960 CCCTTTTAATTCCACAACTTCTTGGCA-CTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
** * *
46991 TTCTTTTCAAGTCCACAACTTCGTGGTACC--T
1 CCCTTTT-AAGTCCACAACTCCGTGGCACCTTT
47022 ---TTTTAAGTCCACAACTCCGTGGCACCTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
47051 CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
* * * * *
47083 TCCTTTCAAGTCCATAACTGCGT-G-A-C--A
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
* * ** *
47110 CCCTTTTAAATCCAAAACTCTATGGCTCCTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
* *
47142 CCCTTTTAAGTCCACGA-TCTGTGGCACCTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
* *
47173 TCCTTTCAAGTCCACAACTCCGTGGCACCTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
* * * *
47205 TCCTTTTAAAGCCCATAACTCTGTGGCA-----
1 CCCTTTT-AAGTCCACAACTCCGTGGCACCTTT
* * * *
47233 CCCTTTTCAGTGCACAACTCTGTGGCAACTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
* * *
47265 TCCTTTTAAAGCCCATAACTCCGTGGCA-----
1 CCCTTTT-AAGTCCACAACTCCGTGGCACCTTT
*
47293 CCCTTTTAAGTCCACAACTCCATTGG-ACCTTT
1 CCCTTTTAAGTCCACAACTCC-GTGGCACCTTT
* * *
47325 TCTTTTTAAAGCCCACAACTCCGTGGCA-----
1 CCCTTTT-AAGTCCACAACTCCGTGGCACCTTT
* *
47353 CCCTTTTAAGTCCATAACTCCGTGGCATCTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
* * *
47385 TCCTTTTAAGTCCATAACTCCGTGGCATCTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
* ** * *
47417 TCCTTTTAAGTCCATGACTCCGTTGCATCTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
* ** *
47449 CCCTTTTAAGTCCACAATTCTATGGCACATTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
* * * *
47481 TCCTTTTAAAGCCCATAACTCCATGGCA-----
1 CCCTTTT-AAGTCCACAACTCCGTGGCACCTTT
* *
47509 CCCTTTTAAGTCCACAACTCCATGGCACATTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCAC-CTTT
* * * *
47542 TCTTTTTAAAGCCCATAACTCCGTGGCA----T
1 CCCTTTT-AAGTCCACAACTCCGTGGCACCTTT
* *
47571 -CCTTTTAAGTCCACAACTTCGTGGCACATTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCAC-CTTT
*
47603 CCCTTTTAAG-CCTCAACTCCGTGGCA-----
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
*
47629 CCCTTTTAAGTCCACAAATCCGTGGCAC
1 CCCTTTTAAGTCCACAACTCCGTGGCAC
47657 TCCACAACTC
Statistics
Matches: 555, Mismatches: 93, Indels: 102
0.74 0.12 0.14
Matches are distributed among these distances:
26 10 0.02
27 132 0.24
28 36 0.06
29 3 0.01
30 2 0.00
31 37 0.07
32 241 0.43
33 77 0.14
34 17 0.03
ACGTcount: A:0.22, C:0.32, G:0.12, T:0.34
Consensus pattern (32 bp):
CCCTTTTAAGTCCACAACTCCGTGGCACCTTT
Found at i:47007 original size:91 final size:91
Alignment explanation
Indices: 46909--47707 Score: 527
Period size: 91 Copynumber: 8.9 Consensus size: 91
46899 TTTTCTTCCG
* *
46909 AGTCCACAACTCCGTGACACCCTTTTAAGTCCACAACTCCGTGGCACCTTTCCCTTTTAATTCCA
1 AGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTCCCTTTTAAGTCCA
*
46974 CAACTTCTTGGCACTTTTTCTTTTCA
66 CAACTCCTTGGCACTTTTTCTTTTCA
* * *
47000 AGTCCACAACTTCGTGGTACCTTTTTAAGTCCACAACTCCGTGGCACCTTTCCCTTTTAAGTCCA
1 AGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTCCCTTTTAAGTCCA
* * *
47065 CAACTCCGTGGCACCTTTTCCTTTCA
66 CAACTCCTTGGCACTTTTTCTTTTCA
* * * * * ** *
47091 AGTCCATAACTGCGTGACACCCTTTTAAATCCAAAACTCTATGGCTCCTTTCCCTTTTAAGTCCA
1 AGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTCCCTTTTAAGTCCA
* * *
47156 CGA-T-CTGTGGCACCTTTTCCTTTCA
66 CAACTCCT-TGGCACTTTTTCTTTTCA
* * * *
47181 AGTCCACAACTCCGTGGCACCTTTTCCTTTTAAAGCCCATAACTCTGTGGCA-----CCCTTTTC
1 AGTCCACAACTCCGTGGCA-C----CCTTTT-AAGTCCACAACTCCGTGGCACCTTTCCCTTTTA
* * *
47241 AGTGCACAACT-CTGTGGCAACTTTTCCTTTTAA
60 AGTCCACAACTCCT-TGGC-ACTTTTTCTTTTCA
* * * * * *
47274 AGCCCATAACTCCGTGGCACCCTTTTAAGTCCACAACTCCATTGG-ACCTTTTCTTTTTAAAGCC
1 AGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCC-GTGGCACCTTTCCCTTTT-AAGTC
* *
47338 CACAACTCCGTGGCAC----CCTTTT-A
64 CACAACTCCTTGGCACTTTTTCTTTTCA
* * * *
47361 AGTCCATAACTCCGTGGCATCTTTTCCTTTTAAGTCCATAACTCCGTGGCATCTTTTCCTTTTAA
1 AGTCCACAACTCCGTGGCA-C----CCTTTTAAGTCCACAACTCCGTGGCACCTTTCCCTTTTAA
** **
47426 GTCCATGACTCCGTT-GCATCTTTCCCTTTT-A
61 GTCCACAACTCC-TTGGCA-CTTTTTCTTTTCA
* ** * * *
47457 AGTCCACAATTCTATGGCACATTTTCCTTTTAAAGCCCATAACTCCATGGCA-----CCCTTTTA
1 AGTCCACAACTCCGTGGCAC-----CCTTTT-AAGTCCACAACTCCGTGGCACCTTTCCCTTTTA
* *
47517 AGTCCACAACTCCATGGCACATTTTTCTTTTTAA
60 AGTCCACAACTCCTTGGCAC-TTTTTC-TTTTCA
* * * * *
47551 AGCCCATAACTCCGTGGCATCCTTTTAAGTCCACAACTTCGTGGCACATTTTCCCTTTTAAG-CC
1 AGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCAC-CTTTCCCTTTTAAGTCC
* * *
47615 TCAACTCCGTGGCAC----CCTTTT-A
65 ACAACTCCTTGGCACTTTTTCTTTTCA
* * *
47637 AGTCCACAAATCCGTGGCA--C-------TCCACAACTCCATGGCATCTTTTCCCTTTTAAGTCC
1 AGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCTTTCCCTTTTAAGTCC
*
47693 ACAACTCCGTGGCAC
65 ACAACTCCTTGGCAC
47708 CCCCTTCTAA
Statistics
Matches: 577, Mismatches: 88, Indels: 99
0.76 0.12 0.13
Matches are distributed among these distances:
77 29 0.05
78 17 0.03
84 1 0.00
86 17 0.03
87 35 0.06
88 33 0.06
89 7 0.01
90 35 0.06
91 173 0.30
92 73 0.13
93 59 0.10
94 26 0.05
95 7 0.01
96 47 0.08
97 18 0.03
ACGTcount: A:0.22, C:0.32, G:0.12, T:0.33
Consensus pattern (91 bp):
AGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTCCCTTTTAAGTCCA
CAACTCCTTGGCACTTTTTCTTTTCA
Found at i:47033 original size:59 final size:59
Alignment explanation
Indices: 46928--47656 Score: 302
Period size: 60 Copynumber: 11.9 Consensus size: 59
46918 CTCCGTGACA
* * *
46928 CCCTTTTAAGTCCACAACTCCGTGGCACCTTTCCCTTTTAATTCCACAACTTCTTGGCA-CTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACC--T---TTTTAAGTCCACAACTCCGTGGCACCTTT
** * *
46991 TTCTTTTCAAGTCCACAACTTCGTGGTACCTTTTTAAGTCCACAACTCCGTGGCACCTTT
1 CCCTTTT-AAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCCGTGGCACCTTT
* * *
47051 CCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTCAAGTCCATAACTGCGT-G-A-C--A
1 CCCTTTTAAGTCCACAACTCCGTGGCACC--TT--TTT-AAGTCCACAACTCCGTGGCACCTTT
* * ** * * *
47110 CCCTTTTAAATCCAAAACTCTATGGCTCCTTTCCCTTTTAAGTCCACGA-TCTGTGGCACCTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACC--T---TTTTAAGTCCACAACTCCGTGGCACCTTT
* * * * *
47173 TCCTTTCAAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAAGCCCATAACTCTGTGGCA-----
1 CCCTTTTAAGTCCACAACTCCGTGGCACC---T--TTTT-AAGTCCACAACTCCGTGGCACCTTT
* * * * * *
47233 CCCTTTTCAGTGCACAACTCTGTGGCAACTTTTCCTTTTAAAGCCCATAACTCCGTGGCA-----
1 CCCTTTTAAGTCCACAACTCCGTGGC-A-----CCTTTTTAAGTCCACAACTCCGTGGCACCTTT
* *
47293 CCCTTTTAAGTCCACAACTCCATTGG-ACCTTTTCTTTTTAAAGCCCACAACTCCGTGGCA----
1 CCCTTTTAAGTCCACAACTCC-GTGGCA-C----CTTTTT-AAGTCCACAACTCCGTGGCACCTT
47353 -
59 T
* * * *
47353 CCCTTTTAAGTCCATAACTCCGTGGCATCTTTTCCTTTTAAGTCCATAACTCCGTGGCATCTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCA-C----CTTTTTAAGTCCACAACTCCGTGGCACCTTT
* ** * * * ** *
47417 TCCTTTTAAGTCCATGACTCCGTTGCATCTTTCCCTTTTAAGTCCACAATTCTATGGCACATTT
1 CCCTTTTAAGTCCACAACTCCGTGGCA-----CCTTTTTAAGTCCACAACTCCGTGGCACCTTT
* * * * * * *
47481 TCCTTTTAAAGCCCATAACTCCATGGCACCCTTTTAAGTCCACAACTCCATGGCACATTTT
1 CCCTTTT-AAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCCGTGGCAC-CTTT
* * * * * *
47542 TCTTTTTAAAGCCCATAACTCCGTGGCATCC-TTTTAAGTCCACAACTTCGTGGCACATTTT
1 CCCTTTT-AAGTCCACAACTCCGTGGCA-CCTTTTTAAGTCCACAACTCCGTGGCAC-CTTT
* * *
47603 CCCTTTTAAG-CCTCAACTCCGTGGCACCCTTTTAAGTCCACAAATCCGTGGCAC
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCCGTGGCAC
47657 TCCACAACTC
Statistics
Matches: 542, Mismatches: 80, Indels: 92
0.76 0.11 0.13
Matches are distributed among these distances:
55 1 0.00
58 5 0.01
59 141 0.26
60 150 0.28
61 73 0.13
62 5 0.01
63 38 0.07
64 100 0.18
65 25 0.05
66 2 0.00
68 2 0.00
ACGTcount: A:0.22, C:0.32, G:0.12, T:0.34
Consensus pattern (59 bp):
CCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCCGTGGCACCTTT
Found at i:47258 original size:60 final size:60
Alignment explanation
Indices: 46916--47457 Score: 424
Period size: 60 Copynumber: 8.9 Consensus size: 60
46906 CCGAGTCCAC
* * ** *
46916 AACTCCGTGACACCCTTTTAAGTCCACAACTCCGTGGCACCTTTCCCTTTT-AATTCCAC
1 AACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAAGCCCAT
* * * * * * *
46975 AACTTCTTGGCACTTTTTCTTTTCAAGTCCACAACTTCGTGGTACC---T--TTTT-AAGTCCAC
1 AACTCCGTGGCAC----CCTTTT-AAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAAGCCCAT
* *
47034 AACTCCGTGGCACCTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCC-TTTCAAGTCCAT
1 AACTCCGTGGCA-----CCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAAGCCCAT
* * * * ** * * * *
47098 AACTGCGTGACACCCTTTTAAATCCAAAACTCTATGGCTCCTTTCCCTTTT-AAGTCCAC
1 AACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAAGCCCAT
* * *
47157 GA-TCTGTGGCACCTTTTCCTTTCAAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAAGCCCAT
1 AACTCCGTGGCA-C----CCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAAGCCCAT
* * * * *
47221 AACTCTGTGGCACCCTTTTCAGTGCACAACTCTGTGGCAACTTTTCCTTTTAAAGCCCAT
1 AACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAAGCCCAT
* * *
47281 AACTCCGTGGCACCCTTTTAAGTCCACAACTCCATTGG-ACCTTTTCTTTTTAAAGCCCAC
1 AACTCCGTGGCACCCTTTTAAGTCCACAACTCC-GTGGCACCTTTTCCTTTTAAAGCCCAT
* * *
47341 AACTCCGTGGCACCCTTTTAAGTCCATAACTCCGTGGCATCTTTTCCTTTT-AAGTCCAT
1 AACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAAGCCCAT
** * * *
47400 AACTCCGTGGCATCTTTTCCTTTTAAGTCCATGACTCCGTTGCATCTTTCCCTTTTAA
1 AACTCCGTGGCA-C----CCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTTAA
47458 GTCCACAATT
Statistics
Matches: 392, Mismatches: 59, Indels: 58
0.77 0.12 0.11
Matches are distributed among these distances:
58 6 0.02
59 110 0.28
60 142 0.36
61 3 0.01
62 1 0.00
63 39 0.10
64 81 0.21
65 10 0.03
ACGTcount: A:0.21, C:0.32, G:0.12, T:0.35
Consensus pattern (60 bp):
AACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAAGCCCAT
Found at i:47547 original size:60 final size:60
Alignment explanation
Indices: 47354--47656 Score: 303
Period size: 61 Copynumber: 4.9 Consensus size: 60
47344 TCCGTGGCAC
* * *
47354 CCTTTT-AAGTCCATAACTCCGTGGCATCTTTTCCTTTTAAGTCCATAACTCCGTGGCATC-TTT
1 CCTTTTAAAGCCCATAACTCCGTGGCA-C----CCTTTTAAGTCCACAACTCCATGGCA-CATTT
47417 T
60 T
* * * * *
47418 CCTTTT-AAGTCCATGACTCCGTTGCATCTTTCCCTTTTAAGTCCACAATTCTATGGCACATTTT
1 CCTTTTAAAGCCCATAACTCCGTGGCA-----CCCTTTTAAGTCCACAACTCCATGGCACATTTT
*
47482 CCTTTTAAAGCCCATAACTCCATGGCACCCTTTTAAGTCCACAACTCCATGGCACATTTTT
1 CCTTTTAAAGCCCATAACTCCGTGGCACCCTTTTAAGTCCACAACTCCATGGCACA-TTTT
* * * *
47543 CTTTTTAAAGCCCATAACTCCGTGGCATCCTTTTAAGTCCACAACTTCGTGGCACATTTT
1 CCTTTTAAAGCCCATAACTCCGTGGCACCCTTTTAAGTCCACAACTCCATGGCACATTTT
* *
47603 CCCTTTT-AAG-CC-TCAACTCCGTGGCACCCTTTTAAGTCCACAAATCCGTGGCAC
1 -CCTTTTAAAGCCCAT-AACTCCGTGGCACCCTTTTAAGTCCACAACTCCATGGCAC
47657 TCCACAACTC
Statistics
Matches: 209, Mismatches: 21, Indels: 23
0.83 0.08 0.09
Matches are distributed among these distances:
58 1 0.00
59 39 0.19
60 34 0.16
61 60 0.29
63 1 0.00
64 56 0.27
65 16 0.08
68 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.35
Consensus pattern (60 bp):
CCTTTTAAAGCCCATAACTCCGTGGCACCCTTTTAAGTCCACAACTCCATGGCACATTTT
Found at i:47662 original size:18 final size:18
Alignment explanation
Indices: 47639--47673 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
47629 CCCTTTTAAG
*
47639 TCCACAAATCCGTGGCAC
1 TCCACAAATCCATGGCAC
*
47657 TCCACAACTCCATGGCA
1 TCCACAAATCCATGGCA
47674 TCTTTTCCCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.40, G:0.14, T:0.17
Consensus pattern (18 bp):
TCCACAAATCCATGGCAC
Found at i:47888 original size:52 final size:52
Alignment explanation
Indices: 47745--47888 Score: 173
Period size: 51 Copynumber: 2.8 Consensus size: 52
47735 GGCATCTCCT
* * * *
47745 TTTAGGTCCAATGTCACCGGCCTTGAATCAGCACATTGGCACCTTTATCATC
1 TTTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACATTTACCATC
* ** *
47797 -TTAAGTCCAATATTGCTGGCCTTGAATCAGCACATTGGCACATTTGCCATC
1 TTTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACATTTACCATC
* * * *
47848 TTTATGTCTAATGTCACTAGCCTTAAATCAGCACATTGGCA
1 TTTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCA
47889 TAAGACTAAT
Statistics
Matches: 76, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
51 43 0.57
52 33 0.43
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (52 bp):
TTTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACATTTACCATC
Found at i:47925 original size:39 final size:39
Alignment explanation
Indices: 47855--47967 Score: 145
Period size: 39 Copynumber: 2.9 Consensus size: 39
47845 ATCTTTATGT
* * *
47855 CTAATGTCACTAGCCTTAAATCAGCACATTGGCATAAGA
1 CTAATGTCACTAGCCTTGAATCAGCATATTGGCACAAGA
* * * *
47894 CTAATGTCACTGGCCTCGAATTAGCATATTGGCACAAGC
1 CTAATGTCACTAGCCTTGAATCAGCATATTGGCACAAGA
* *
47933 CTAATATCGCTAGCCTTGAATCAGCATATTGGCAC
1 CTAATGTCACTAGCCTTGAATCAGCATATTGGCAC
47968 CTTTATCTTT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (39 bp):
CTAATGTCACTAGCCTTGAATCAGCATATTGGCACAAGA
Found at i:47995 original size:88 final size:88
Alignment explanation
Indices: 47889--48057 Score: 248
Period size: 88 Copynumber: 1.9 Consensus size: 88
47879 CACATTGGCA
* * * * *
47889 TAAGACTAATGTCACTGGCCTCGAATTAGCATATTGGCACAAGCCTAATATCGCTAGCCTTGAAT
1 TAAGACCAATGTCACTGGCCTCGAATCAGCACATTGACACAAGCCCAATATCGCTAGCCTTGAAT
47954 CAGCATATTGGCACCTTTATCTT
66 CAGCATATTGGCACCTTTATCTT
* * * *
47977 TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGACATAAGCCCAATATCGCTGGCCTTGAAT
1 TAAGACCAATGTCACTGGCCTCGAATCAGCACATTGACACAAGCCCAATATCGCTAGCCTTGAAT
*
48042 CAGCTTATTGGCACCT
66 CAGCATATTGGCACCT
48058 CGAGTCGAAC
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 71 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (88 bp):
TAAGACCAATGTCACTGGCCTCGAATCAGCACATTGACACAAGCCCAATATCGCTAGCCTTGAAT
CAGCATATTGGCACCTTTATCTT
Found at i:48034 original size:127 final size:128
Alignment explanation
Indices: 47805--48055 Score: 315
Period size: 127 Copynumber: 2.0 Consensus size: 128
47795 TCTTAAGTCC
* * * * *
47805 AATATTGCTGGCCTTGAATCAGCACATTGGCACATTTGCCATCTTTATGTCTAATGTCACTAGCC
1 AATATCGCTAGCCTTGAATCAGCACATTGGCACATTT--CATCTTTAAGACCAATGTCACTAGCC
* * * *
47870 TTAAATCAGCACATTGGCATAAGACTAATGTCACTGGCCTCGAATTAGCATATTGGCACAAGCCT
64 TTAAATCAGCACATTGACATAAGACCAATATCACTGGCCTCGAATCAGCATATTGGCACAAGCCT
* * * *
47935 AATATCGCTAGCCTTGAATCAGCATATTGGCACCTTT-ATCTTTAAGACCAATGTCGCTGGCCTT
1 AATATCGCTAGCCTTGAATCAGCACATTGGCACATTTCATCTTTAAGACCAATGTCACTAGCCTT
* * * * *
47999 GAATCAGCACATTGACATAAGCCCAATATCGCTGGCCTTGAATCAGCTTATTGGCAC
66 AAATCAGCACATTGACATAAGACCAATATCACTGGCCTCGAATCAGCATATTGGCAC
48056 CTCGAGTCGA
Statistics
Matches: 103, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
127 70 0.68
130 33 0.32
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (128 bp):
AATATCGCTAGCCTTGAATCAGCACATTGGCACATTTCATCTTTAAGACCAATGTCACTAGCCTT
AAATCAGCACATTGACATAAGACCAATATCACTGGCCTCGAATCAGCATATTGGCACAAGCCT
Found at i:50990 original size:13 final size:13
Alignment explanation
Indices: 50972--50999 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
50962 ATACAAAGAT
50972 CAATGTATCGATA
1 CAATGTATCGATA
50985 CAATGTATCGATA
1 CAATGTATCGATA
50998 CA
1 CA
51000 TTAAATAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:50992 original size:33 final size:32
Alignment explanation
Indices: 50954--51019 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 32
50944 AAATTCCCAC
*
50954 ATGTATTGATACA-AAGATCAATGTATCGATACA
1 ATGTATCGATACATAA-AT-AATGTATCGATACA
50987 ATGTATCGATACATTAAATAATGTATCGATACA
1 ATGTATCGATACA-TAAATAATGTATCGATACA
51020 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 26 0.87
34 2 0.07
35 2 0.07
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (32 bp):
ATGTATCGATACATAAATAATGTATCGATACA
Found at i:56489 original size:20 final size:20
Alignment explanation
Indices: 56439--56480 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
56429 CAATATAAAG
56439 CAAATTGTATCGATACATTTA
1 CAAA-TGTATCGATACATTTA
*
56460 GAAATGTATCGATACATTTA
1 CAAATGTATCGATACATTTA
56480 C
1 C
56481 TTATGTATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (20 bp):
CAAATGTATCGATACATTTA
Found at i:56569 original size:20 final size:21
Alignment explanation
Indices: 56544--56595 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
56534 TATTTGAGAC
**
56544 ATGTATCGATACATTCA-TTT
1 ATGTATCGATACATTCACTAA
*
56564 ATGTATCGATACTTTCACTAA
1 ATGTATCGATACATTCACTAA
56585 ATGTATCGATA
1 ATGTATCGATA
56596 AAAATCGTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (21 bp):
ATGTATCGATACATTCACTAA
Found at i:60715 original size:16 final size:16
Alignment explanation
Indices: 60694--60726 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
60684 TTTTATAATT
60694 ATTACTACAAACATTC
1 ATTACTACAAACATTC
60710 ATTACTACAAACATTC
1 ATTACTACAAACATTC
60726 A
1 A
60727 AATATAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTACTACAAACATTC
Found at i:61300 original size:19 final size:19
Alignment explanation
Indices: 61278--61318 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
61268 AAATTCAAAT
61278 ATAAATATAAAATAATAAA
1 ATAAATATAAAATAATAAA
* *
61297 ATAAATATATAATAATTAA
1 ATAAATATAAAATAATAAA
61316 ATA
1 ATA
61319 CATCTTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
ATAAATATAAAATAATAAA
Found at i:63440 original size:15 final size:16
Alignment explanation
Indices: 63402--63440 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
63392 TGAATAAAAC
*
63402 CTCTTTTAAATAACAG
1 CTCTTTTAAACAACAG
*
63418 CTCTTTTAAACAAGAG
1 CTCTTTTAAACAACAG
63434 C-CTTTTA
1 CTCTTTTA
63441 GTAAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (16 bp):
CTCTTTTAAACAACAG
Found at i:65029 original size:21 final size:21
Alignment explanation
Indices: 65003--65042 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
64993 CTTATAGTTA
*
65003 AAGTACTAGCAACAATGGTGG
1 AAGTACCAGCAACAATGGTGG
*
65024 AAGTACCAGCAATAATGGT
1 AAGTACCAGCAACAATGGT
65043 AGAAAGATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (21 bp):
AAGTACCAGCAACAATGGTGG
Found at i:66262 original size:15 final size:16
Alignment explanation
Indices: 66206--66289 Score: 68
Period size: 15 Copynumber: 5.2 Consensus size: 16
66196 TAAATAACAG
66206 TTTTTTAATAAAAT--
1 TTTTTTAATAAAATAA
*
66220 TTTTTTAATGAAATAA
1 TTTTTTAATAAAATAA
* *
66236 -TATATAATAAAATAA
1 TTTTTTAATAAAATAA
66251 TTTTTTAA-AAAATTATTA
1 TTTTTTAATAAAA-TA--A
*
66269 TAATTTTAATAAAATAA
1 T-TTTTTAATAAAATAA
66286 TTTT
1 TTTT
66290 ATTACTTATT
Statistics
Matches: 54, Mismatches: 8, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
14 13 0.24
15 16 0.30
16 9 0.17
17 2 0.04
18 2 0.04
19 8 0.15
20 4 0.07
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (16 bp):
TTTTTTAATAAAATAA
Found at i:66270 original size:29 final size:29
Alignment explanation
Indices: 66211--66272 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
66201 AACAGTTTTT
*
66211 TAATAAAATTTTTTTAATGAAATAATATA
1 TAATAAAATTTTTTTAATAAAATAATATA
*
66240 TAATAAAATAATTTTTTAA-AAAATTAT-TA
1 TAATAAAAT--TTTTTTAATAAAATAATATA
66269 TAAT
1 TAAT
66273 TTTAATAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 15 0.52
30 6 0.21
31 8 0.28
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (29 bp):
TAATAAAATTTTTTTAATAAAATAATATA
Found at i:66287 original size:14 final size:14
Alignment explanation
Indices: 66208--66290 Score: 54
Period size: 14 Copynumber: 6.4 Consensus size: 14
66198 AATAACAGTT
**
66208 TTTTAATAAAATTT
1 TTTTAATAAAATAA
*
66222 TTTTAATGAAATAA
1 TTTTAATAAAATAA
*
66236 TATATAATAAAATAA
1 T-TTTAATAAAATAA
*
66251 TTTT-TTAAAA-AA
1 TTTTAATAAAATAA
*
66263 --TT-AT--TATAA
1 TTTTAATAAAATAA
66272 TTTTAATAAAATAA
1 TTTTAATAAAATAA
66286 TTTTA
1 TTTTA
66291 TTACTTATTT
Statistics
Matches: 52, Mismatches: 10, Indels: 14
0.68 0.13 0.18
Matches are distributed among these distances:
8 1 0.02
9 2 0.04
10 3 0.06
11 2 0.04
12 4 0.08
13 5 0.10
14 23 0.44
15 12 0.23
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (14 bp):
TTTTAATAAAATAA
Found at i:67398 original size:25 final size:25
Alignment explanation
Indices: 67366--67416 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
67356 TATAAATATG
*
67366 ATAAATATTAA-TATAATTAATTAAA
1 ATAAATATTAATTATAAAT-ATTAAA
67391 ATAAATATTAATTATAAATATTAAA
1 ATAAATATTAATTATAAATATTAAA
67416 A
1 A
67417 ATTAAAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (25 bp):
ATAAATATTAATTATAAATATTAAA
Found at i:67407 original size:13 final size:13
Alignment explanation
Indices: 67342--67414 Score: 60
Period size: 13 Copynumber: 5.5 Consensus size: 13
67332 TAATTATTTC
*
67342 ATATTTATTATAA
1 ATATTAATTATAA
* *
67355 TTATAAATATGATAA
1 ATATTAAT-T-ATAA
67370 ATATTAA-TATAA
1 ATATTAATTATAA
* *
67382 TTAATTAA-AATAA
1 AT-ATTAATTATAA
67395 ATATTAATTATAA
1 ATATTAATTATAA
67408 ATATTAA
1 ATATTAA
67415 AAATTAAAAT
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
12 10 0.21
13 27 0.57
14 1 0.02
15 9 0.19
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (13 bp):
ATATTAATTATAA
Found at i:67428 original size:20 final size:20
Alignment explanation
Indices: 67378--67446 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 20
67368 AAATATTAAT
*
67378 ATAATT-AATTAAAATAAATA
1 ATAATTAAATTTAAA-AAATA
* *
67398 TTAATTATAAATATTAAAAATTA
1 ATAA-T-TAAAT-TTAAAAAATA
67421 A-AATTAAATTTAAAAAATA
1 ATAATTAAATTTAAAAAATA
67440 ATAATTA
1 ATAATTA
67447 TAATCTCACG
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
19 10 0.26
20 13 0.33
21 2 0.05
22 3 0.08
23 7 0.18
24 4 0.10
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
ATAATTAAATTTAAAAAATA
Found at i:68066 original size:24 final size:24
Alignment explanation
Indices: 68024--68071 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
68014 ATGTTAAAAA
* * * *
68024 AATTATTTTTATATTAATATTTAT
1 AATTAATTTTAAATAAATAATTAT
68048 AATTAATTTTAAATAAATAATTAT
1 AATTAATTTTAAATAAATAATTAT
68072 TTTTATTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
AATTAATTTTAAATAAATAATTAT
Found at i:68679 original size:9 final size:9
Alignment explanation
Indices: 68653--68767 Score: 55
Period size: 8 Copynumber: 12.8 Consensus size: 9
68643 AAATTAAATT
68653 TATATTTAA
1 TATATTTAA
*
68662 AAT-TTTAA
1 TATATTTAA
68670 TATATTTAA
1 TATATTTAA
*
68679 TA-ATTTATTT
1 TATATTTA--A
68689 TATAATTTAA
1 TAT-ATTTAA
*
68699 TAAAATTTAA
1 T-ATATTTAA
*
68709 TA-AATTAA
1 TATATTTAA
68717 TA-ATTT-A
1 TATATTTAA
*
68724 TATTATATAA
1 TA-TATTTAA
68734 -AT-TTTAA
1 TATATTTAA
*
68741 TATATTTTATT
1 TATA-TTTA-A
68752 TATATTTAA
1 TATATTTAA
*
68761 AATATTT
1 TATATTT
68768 TTATATTATT
Statistics
Matches: 81, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
7 7 0.09
8 25 0.31
9 20 0.25
10 19 0.23
11 5 0.06
12 5 0.06
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (9 bp):
TATATTTAA
Found at i:68684 original size:8 final size:8
Alignment explanation
Indices: 68656--68723 Score: 56
Period size: 8 Copynumber: 8.6 Consensus size: 8
68646 TTAAATTTAT
68656 ATTTAA-A
1 ATTTAATA
68663 ATTTTAATA
1 A-TTTAATA
68672 TATTTAATA
1 -ATTTAATA
68681 ATTT-AT-
1 ATTTAATA
68687 -TTT-ATA
1 ATTTAATA
68693 ATTTAATAAA
1 ATTTAAT--A
68703 ATTTAATA
1 ATTTAATA
*
68711 AATTAATA
1 ATTTAATA
68719 ATTTA
1 ATTTA
68724 TATTATATAA
Statistics
Matches: 51, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
5 5 0.10
7 6 0.12
8 23 0.45
9 8 0.16
10 9 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (8 bp):
ATTTAATA
Found at i:68684 original size:31 final size:30
Alignment explanation
Indices: 68649--68820 Score: 98
Period size: 32 Copynumber: 5.3 Consensus size: 30
68639 ATATAAATTA
68649 AATTTATATTTAAAATTTTAATATATTTAAT
1 AATTTATATTTAAAATTTTAATATATTT-AT
* * *
68680 AATTTATTTTATAATTTAATAAAATTTAATAAATTAAT
1 -A---A-TTTAT-ATTT-A-AAATTTTAATATATTTAT
68718 AATTTATATTATATAAATTTTAATATATTT-T
1 AATTTATATT-TA-AAATTTTAATATATTTAT
*
68749 -ATTTATATTTAAAATATTTTTATATTATTTTAT
1 AATTTATATTT-AAA-ATTTTAATA-TA-TTTAT
* **
68782 ATTTTAT-TTTAATTTTTTATATTATATTTAT
1 AATTTATATTTAAAATTTTA-A-TATATTTAT
*
68813 ATTTTATA
1 AATTTATA
68821 ATCATATAAA
Statistics
Matches: 112, Mismatches: 11, Indels: 34
0.71 0.07 0.22
Matches are distributed among these distances:
29 3 0.03
30 18 0.16
31 19 0.17
32 27 0.24
33 12 0.11
34 6 0.05
35 1 0.01
36 5 0.04
37 5 0.04
38 3 0.03
39 13 0.12
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (30 bp):
AATTTATATTTAAAATTTTAATATATTTAT
Found at i:68685 original size:17 final size:17
Alignment explanation
Indices: 68653--68747 Score: 63
Period size: 17 Copynumber: 5.4 Consensus size: 17
68643 AAATTAAATT
68653 TATATTTAA-AATTTTAA
1 TATATTTAATAA-TTTAA
*
68670 TATATTTAATAATTTATTT
1 TATATTTAATAATTTA--A
68689 TATAATTTAATAAAATTTAA
1 TAT-ATTTAAT--AATTTAA
*
68709 TA-AATTAATAATTT-A
1 TATATTTAATAATTTAA
* *
68724 TATTATATAA-ATTTTAA
1 TA-TATTTAATAATTTAA
68741 TATATTT
1 TATATTT
68748 TATTTATATT
Statistics
Matches: 62, Mismatches: 7, Indels: 19
0.70 0.08 0.22
Matches are distributed among these distances:
15 3 0.05
16 13 0.21
17 20 0.32
18 8 0.13
19 3 0.05
20 9 0.15
22 6 0.10
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TATATTTAATAATTTAA
Found at i:68696 original size:30 final size:31
Alignment explanation
Indices: 68649--68753 Score: 85
Period size: 30 Copynumber: 3.4 Consensus size: 31
68639 ATATAAATTA
*
68649 AATTTATATTTAAAATTTTAAT-ATATTTAAT
1 AATTTATATTTAAAA-TTTAATAAAATTTAAT
*
68680 AATTTAT-TTTATAATTTAATAAAATTTAAT
1 AATTTATATTTAAAATTTAATAAAATTTAAT
* * *
68710 AAATTAATAATTT-ATA-TTATATAAATTTTAAT
1 -AATTTAT-ATTTAAAATTTA-ATAAAATTTAAT
68742 ATATTT-TATTTA
1 A-ATTTATATTTA
68754 TATTTAAAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
29 6 0.10
30 18 0.30
31 18 0.30
32 15 0.25
33 3 0.05
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (31 bp):
AATTTATATTTAAAATTTAATAAAATTTAAT
Found at i:68749 original size:10 final size:10
Alignment explanation
Indices: 68663--68794 Score: 56
Period size: 10 Copynumber: 12.8 Consensus size: 10
68653 TATATTTAAA
68663 ATTTTAATAT
1 ATTTTAATAT
*
68673 ATTTAATAATTT
1 ATTT--TAATAT
68685 ATTTT-ATA-
1 ATTTTAATAT
*
68693 A-TTTAATAA
1 ATTTTAATAT
* *
68702 AATTTAATAA
1 ATTTTAATAT
* *
68712 ATTAATAATTT
1 ATT-TTAATAT
* *
68723 ATATTATATAA
1 ATTTTA-ATAT
68734 ATTTTAATAT
1 ATTTTAATAT
*
68744 ATTTT-ATTT
1 ATTTTAATAT
*
68753 ATATTTAAAAT
1 AT-TTTAATAT
*
68764 ATTTTTATATT
1 ATTTTAATA-T
*
68775 ATTTTATATTTT
1 ATTTTA-A-TAT
68787 ATTTTAAT
1 ATTTTAAT
68795 TTTTTATATT
Statistics
Matches: 91, Mismatches: 19, Indels: 24
0.68 0.14 0.18
Matches are distributed among these distances:
7 3 0.03
8 4 0.04
9 8 0.09
10 34 0.37
11 24 0.26
12 17 0.19
13 1 0.01
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
ATTTTAATAT
Found at i:68750 original size:21 final size:21
Alignment explanation
Indices: 68694--68773 Score: 56
Period size: 21 Copynumber: 3.8 Consensus size: 21
68684 TATTTTATAA
* *
68694 TTTAATAAAATTTA-ATAAAT
1 TTTAATATATTTTATATAAAT
* * *
68714 TAATAATTTATATTATATAAAT
1 T-TTAATATATTTTATATAAAT
* *
68736 TTTAATATATTTTATTTATA-
1 TTTAATATATTTTATATAAAT
*
68756 TTTAAAATATTTTTATAT
1 TTTAATATA-TTTTATAT
68774 TATTTTATAT
Statistics
Matches: 45, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
20 9 0.20
21 29 0.64
22 7 0.16
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTAATATATTTTATATAAAT
Found at i:68757 original size:11 final size:11
Alignment explanation
Indices: 68741--68819 Score: 63
Period size: 11 Copynumber: 6.9 Consensus size: 11
68731 TAAATTTTAA
68741 TATATTTTATT
1 TATATTTTATT
68752 TATATTTAAAATATT
1 TATATTT----TATT
* *
68767 TTTATATTATTT
1 TATATTTTA-TT
68779 TATATTTTATT
1 TATATTTTATT
*
68790 T-TAATTT-TT
1 TATATTTTATT
*
68799 TATATTATATT
1 TATATTTTATT
68810 TATATTTTAT
1 TATATTTTAT
68820 AATCATATAA
Statistics
Matches: 53, Mismatches: 8, Indels: 14
0.71 0.11 0.19
Matches are distributed among these distances:
9 3 0.06
10 9 0.17
11 23 0.43
12 9 0.17
15 9 0.17
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TATATTTTATT
Found at i:68785 original size:18 final size:18
Alignment explanation
Indices: 68762--68817 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
68752 TATATTTAAA
68762 ATATTTTTATATTATTTT
1 ATATTTTTATATTATTTT
*
68780 ATA--TTT-TA-T-TTTA
1 ATATTTTTATATTATTTT
68793 AT-TTTTTATATTATATTT
1 ATATTTTTATATTAT-TTT
68811 ATATTTT
1 ATATTTT
68818 ATAATCATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 13
0.66 0.05 0.30
Matches are distributed among these distances:
13 5 0.17
14 4 0.14
15 4 0.14
16 4 0.14
17 1 0.03
18 7 0.24
19 4 0.14
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
ATATTTTTATATTATTTT
Found at i:68801 original size:20 final size:22
Alignment explanation
Indices: 68721--68815 Score: 80
Period size: 20 Copynumber: 4.6 Consensus size: 22
68711 AATTAATAAT
* *
68721 TTATATTATATA-AATTTTA-A
1 TTATATTTTATATTATTTTATA
*
68741 -TATATTTTAT-TTATATTTAAA
1 TTATATTTTATATTAT-TTTATA
*
68762 ATAT-TTTTATATTATTTTATA
1 TTATATTTTATATTATTTTATA
*
68783 TTTTATTTTA-ATT-TTTTATA
1 TTATATTTTATATTATTTTATA
68803 TTATA-TTTATATT
1 TTATATTTTATATT
68816 TTATAATCAT
Statistics
Matches: 62, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
19 15 0.24
20 18 0.29
21 17 0.27
22 12 0.19
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (22 bp):
TTATATTTTATATTATTTTATA
Found at i:69482 original size:11 final size:11
Alignment explanation
Indices: 69466--69496 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
69456 ATTAAAATTA
69466 ATTATATATAT
1 ATTATATATAT
*
69477 ATTATATGTAT
1 ATTATATATAT
69488 ATTATATAT
1 ATTATATAT
69497 TTACTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (11 bp):
ATTATATATAT
Found at i:70185 original size:21 final size:21
Alignment explanation
Indices: 70139--70198 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
70129 AAATAATATC
70139 TTTGGATGAAATG-ATGCATTG
1 TTTGGATGAAA-GAATGCATTG
* * *
70160 GTTGGATGAAAGAATGTATTT
1 TTTGGATGAAAGAATGCATTG
*
70181 TTTGGATGAAAAAATGCA
1 TTTGGATGAAAGAATGCA
70199 ATTTTTAATA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 1 0.03
21 31 0.97
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.35
Consensus pattern (21 bp):
TTTGGATGAAAGAATGCATTG
Found at i:72402 original size:13 final size:13
Alignment explanation
Indices: 72384--72410 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
72374 TAATGAACAC
72384 GTATCGATACAAA
1 GTATCGATACAAA
72397 GTATCGATACAAA
1 GTATCGATACAAA
72410 G
1 G
72411 CAATATGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.22
Consensus pattern (13 bp):
GTATCGATACAAA
Found at i:73181 original size:26 final size:27
Alignment explanation
Indices: 73150--73201 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
73140 TTTTGTTTTC
73150 TCCCTTTTTATTTCAAAAAT-ATCTCT
1 TCCCTTTTTATTTCAAAAATAATCTCT
*
73176 TCCCTTTTTGTTTCAAAAATAATCTC
1 TCCCTTTTTATTTCAAAAATAATCTC
73202 CCATTTTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.27, C:0.23, G:0.02, T:0.48
Consensus pattern (27 bp):
TCCCTTTTTATTTCAAAAATAATCTCT
Found at i:73208 original size:25 final size:23
Alignment explanation
Indices: 73148--73210 Score: 72
Period size: 26 Copynumber: 2.6 Consensus size: 23
73138 TTTTTTGTTT
73148 TCTCCCTTTTTATTTCAAAAATA
1 TCTCCCTTTTTATTTCAAAAATA
*
73171 TCTCTTCCCTTTTTGTTTCAAAAATAA
1 --TC-TCCCTTTTTATTTCAAAAAT-A
*
73198 TCTCCCATTTTAT
1 TCTCCCTTTTTAT
73211 AAAACAAGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
24 9 0.27
25 4 0.12
26 19 0.58
27 1 0.03
ACGTcount: A:0.25, C:0.24, G:0.02, T:0.49
Consensus pattern (23 bp):
TCTCCCTTTTTATTTCAAAAATA
Found at i:76898 original size:39 final size:39
Alignment explanation
Indices: 76855--76931 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
76845 TTTGCTACTA
76855 GCCTAGCTTTGTTCCTAACAATAGTTCTATCTTCATCCG
1 GCCTAGCTTTGTTCCTAACAATAGTTCTATCTTCATCCG
* *
76894 GCCTAGCTTTGTTCCTAGCAATGGTTCTATCTTCATCC
1 GCCTAGCTTTGTTCCTAACAATAGTTCTATCTTCATCC
76932 AATTTATTCC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.18, C:0.29, G:0.14, T:0.39
Consensus pattern (39 bp):
GCCTAGCTTTGTTCCTAACAATAGTTCTATCTTCATCCG
Found at i:78917 original size:11 final size:11
Alignment explanation
Indices: 78894--78931 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 11
78884 AACTTTAATA
78894 TTTTTTTAT-C
1 TTTTTTTATCC
*
78904 TTTTTTTCTCC
1 TTTTTTTATCC
78915 TTTTTTATATCC
1 TTTTTT-TATCC
78927 TTTTT
1 TTTTT
78932 ATAGGGATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 8 0.33
11 7 0.29
12 9 0.38
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTTTTATCC
Found at i:79250 original size:155 final size:155
Alignment explanation
Indices: 78968--79325 Score: 418
Period size: 155 Copynumber: 2.3 Consensus size: 155
78958 CGTCTATAGT
* * * *
78968 CCTTTTTAAGTCTTTAGGGTTACCGGGATACTTTCATGTTGAAGGTATACCCCTAGGGGCATTTT
1 CCTTTTTAAGCCTTTAGGGGTACCGGGATACTTTCACGTCGAAGGTATACCCCTAGGGGCATTTT
** * * * *
79033 TGTTTTTTTCAGAACCGAGTCCTAGATCGTCGTTGGGTCCACTTTGATGCCGAAGGTAGGCATTT
66 TAATTTCTTCAGAACCAACTCCTAGATCGTCGTCGGGTCCACTTTGATGCCGAAGGTAGGCATTT
*
79098 AGGACAGGTTCCTCCC-TTTAAAAA
131 AGGACAGGTTCATCCCTTTTAAAAA
* * *
79122 CCCTTTTTAAGCCCTTTAGGGGTAACGGGATACTTTCACGTCGAAGGTAT-CTCCTAGGGGTATT
1 -CCTTTTTAAG-CCTTTAGGGGTACCGGGATACTTTCACGTCGAAGGTATACCCCTAGGGGCATT
* * ** *
79186 TTCATAATTTCTT-AGAACCAACT-CTAGGTTGTCGTCGGGTCTGCTTTTATGCCGAAGGTAGGC
64 TT--TAATTTCTTCAGAACCAACTCCTAGATCGTCGTCGGGTCCACTTTGATGCCGAAGGTAGGC
* *
79249 ATTTAGGATAGGTTCATCCCTTTTTAAAA
127 ATTTAGGACAGGTTCATCCCTTTTAAAAA
** *
79278 CCTTTTTCAAGTCCTTTAATGGTACCAGGATACTTTCACGTCGAAGGT
1 CCTTTTT-AAG-CCTTTAGGGGTACCGGGATACTTTCACGTCGAAGGT
79326 GTAAGCTCTA
Statistics
Matches: 172, Mismatches: 26, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
155 83 0.48
156 83 0.48
157 6 0.03
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.35
Consensus pattern (155 bp):
CCTTTTTAAGCCTTTAGGGGTACCGGGATACTTTCACGTCGAAGGTATACCCCTAGGGGCATTTT
TAATTTCTTCAGAACCAACTCCTAGATCGTCGTCGGGTCCACTTTGATGCCGAAGGTAGGCATTT
AGGACAGGTTCATCCCTTTTAAAAA
Found at i:83231 original size:13 final size:13
Alignment explanation
Indices: 83213--83240 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
83203 ATACAAAGAT
83213 CAATGTATCGATA
1 CAATGTATCGATA
83226 CAATGTATCGATA
1 CAATGTATCGATA
83239 CA
1 CA
83241 TTGAATAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:83237 original size:33 final size:33
Alignment explanation
Indices: 83195--83260 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
83185 AAATTTCCAG
83195 ATGTATCGATACAAAG-ATCAATGTATCGATACA
1 ATGTATCGATACAAAGAAT-AATGTATCGATACA
**
83228 ATGTATCGATACATTGAATAATGTATCGATACA
1 ATGTATCGATACAAAGAATAATGTATCGATACA
83261 TTTCCTTGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAAAGAATAATGTATCGATACA
Found at i:83905 original size:49 final size:47
Alignment explanation
Indices: 83744--84171 Score: 333
Period size: 49 Copynumber: 9.0 Consensus size: 47
83734 TGAAGAATGA
* * * *
83744 CAATGTGCTGATTTATGGCCAGCGACATTAGACTTGAAGAAGAA-TGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG-AGAAGTGC
** *
83791 CAATGTGCTGAGACAAGGCCAGCGACATTGGGCTTAGGAATGTTA-AAGATGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA--AA-G--AGAAG-TGC
* * * *
83843 CAATATGTTGATTCAAGGCCAACGATATTGGACTTAAAGCAGAATGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG-AGAA-GTGC
* * *
83892 CAATGTGCTGATTCAAGGCCAGCGACCTTGGTCTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-GAA-GTGC
** * *
83941 CAACATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-GAAG-TGC
*
83990 CAATGTGCTGATTCAAGGCCGGCGACATTGGACTT-AA-AG--GTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAGAAGTGC
* * * * * *
84033 CAATTTGTTAATTCAAGGCTAG-TATATTGGACTTAAAGATGAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-GAAG-TGC
** *
84081 CAATGTGCTGATTCAAGGCTGGCGACATTGGACTT--A-A-ATGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAGAAGTGC
* * * *
84124 CAA-ATGCTGATTCAAAGCCAGCGATATTGGACTTAGA-AGAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAGAAG-TGC
84170 CA
1 CA
84172 CCAACTTGTG
Statistics
Matches: 304, Mismatches: 56, Indels: 43
0.75 0.14 0.11
Matches are distributed among these distances:
42 36 0.12
43 28 0.09
44 6 0.02
45 3 0.01
46 7 0.02
47 32 0.11
48 26 0.09
49 127 0.42
50 6 0.02
51 1 0.00
52 32 0.11
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (47 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAGAAGTGC
Found at i:83967 original size:98 final size:96
Alignment explanation
Indices: 83744--84171 Score: 420
Period size: 98 Copynumber: 4.5 Consensus size: 96
83734 TGAAGAATGA
* * * * * * * **
83744 CAATGTGCTGATTTATGGCCAGCGACATTAGACTTGAAGAAG-A-ATGCCAATGTGCTGAGACAA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAA
* *
83807 GGCCAGCGACATTGGGCTTAGGAATGTTAAAGATGC
66 GGCCAGCGACATTGGACTTA--AA---TAAAGGTGC
* *
83843 CAATATGTTGATTCAAGGCCAACGATATTGGACTTAAAGCA-GAATG-TGCCAATGTGCTGATTC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG-ATGAA-GATGCCAATGTGCTGATTC
* *
83906 AAGGCCAGCGACCTTGGTCTTAAAGATAAAGGTGC
64 AAGGCCAGCGACATTGGACTT-AA-ATAAAGGTGC
* *
83941 CAACATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAA
*
84006 GGCCGGCGACATTGGAC-T---TAAAGGTGC
66 GGCCAGCGACATTGGACTTAAATAAAGGTGC
* * * * *
84033 CAATTTGTTAATTCAAGGCTAG-TATATTGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAA
**
84097 GGCTGGCGACATTGGACTTAAAT----GTGC
66 GGCCAGCGACATTGGACTTAAATAAAGGTGC
* *
84124 CAA-ATGCTGATTCAAAGCCAGCGATATTGGACTT--AGAAGAAGATGCCA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATGCCA
84172 CCAACTTGTG
Statistics
Matches: 281, Mismatches: 35, Indels: 36
0.80 0.10 0.10
Matches are distributed among these distances:
89 13 0.05
90 13 0.05
91 74 0.26
92 27 0.10
95 1 0.00
97 3 0.01
98 79 0.28
99 32 0.11
100 3 0.01
101 35 0.12
102 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (96 bp):
CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAA
GGCCAGCGACATTGGACTTAAATAAAGGTGC
Found at i:84088 original size:91 final size:90
Alignment explanation
Indices: 83833--84171 Score: 355
Period size: 91 Copynumber: 3.7 Consensus size: 90
83823 CTTAGGAATG
*
83833 TTAAAGATGCCAATATGTTGATTCAAGGCCAACGATATTGGACTTAAAGCA-GAATG-TGCCAAT
1 TTAAAGGTGCCAATATGTTGATTCAAGG-CAA-GATATTGGACTTAAAG-ATGAA-GATGCCAAT
* * *
83896 GTGCTGATTCAAGGCCAGCGACCTTGGTC
62 GTGCTGATTCAAGGCCGGCGACATTGGAC
* * * *
83925 TTAAAGATAAAGGTGCCAACATGCTGATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGC
1 -T-----TAAAGGTGCCAATATGTTGATTCAAGG-CA-AGATATTGGACTTAAAGATGAAGATGC
83990 CAATGTGCTGATTCAAGGCCGGCGACATTGGAC
58 CAATGTGCTGATTCAAGGCCGGCGACATTGGAC
* * *
84023 TTAAAGGTGCCAATTTGTTAATTCAAGGCTAGTATATTGGACTTAAAGATGAAGATGCCAATGTG
1 TTAAAGGTGCCAATATGTTGATTCAAGGCAAG-ATATTGGACTTAAAGATGAAGATGCCAATGTG
*
84088 CTGATTCAAGGCTGGCGACATTGGAC
65 CTGATTCAAGGCCGGCGACATTGGAC
* * * * *
84114 TTAAATGTGCCAA-ATGCTGATTCAAAGCCAGCGATATTGGACTT--AGAAGAAGATGCCA
1 TTAAAGGTGCCAATATGTTGATTC-AAGGCA-AGATATTGGACTTAAAGATGAAGATGCCA
84172 CCAACTTGTG
Statistics
Matches: 211, Mismatches: 24, Indels: 26
0.81 0.09 0.10
Matches are distributed among these distances:
89 13 0.06
90 8 0.04
91 84 0.40
92 24 0.11
93 1 0.00
97 3 0.01
98 78 0.37
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (90 bp):
TTAAAGGTGCCAATATGTTGATTCAAGGCAAGATATTGGACTTAAAGATGAAGATGCCAATGTGC
TGATTCAAGGCCGGCGACATTGGAC
Found at i:84238 original size:28 final size:29
Alignment explanation
Indices: 84180--84449 Score: 274
Period size: 28 Copynumber: 9.5 Consensus size: 29
84170 CACCAACTTG
* **
84180 TGTGGGCTTTTGAAAGGGTT-ACACCAACT
1 TGTGGGCTTTTGAAA-GGTTGCCACTGACT
* *
84209 TATGTGCTTTTG-AAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
* *
84237 TATGGGC-TTTGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTTG-AAAGGTTGCCACTGACT
* *
84266 TGTGGGC-TTTGAAAGAGGTGCCACCGACT
1 TGTGGGCTTTTGAAAG-GTTGCCACTGACT
84295 TGTGGGCTTTTG-AAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
* * *
84323 TGTGGGCTTTGGAAAAGATGCCACTGACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
* * *
84352 TGTGCGCTTTTG-AAGGTTGCTACTAACT
1 TGTGGGCTTTTGAAAGGTTGCCACTGACT
84380 TGTGGGC-TTTGAAAAGG-TGCCACTGACT
1 TGTGGGCTTTTG-AAAGGTTGCCACTGACT
*
84408 TGTGGGC-TTTGAAAAGG-TGCTACTGACT
1 TGTGGGCTTTTG-AAAGGTTGCCACTGACT
84436 TGTGGGC-TTTGAAA
1 TGTGGGCTTTTGAAA
84450 AGGGTAAGGA
Statistics
Matches: 209, Mismatches: 24, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
27 15 0.07
28 105 0.50
29 85 0.41
30 4 0.02
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (29 bp):
TGTGGGCTTTTGAAAGGTTGCCACTGACT
Found at i:84275 original size:57 final size:56
Alignment explanation
Indices: 84180--84449 Score: 264
Period size: 57 Copynumber: 4.8 Consensus size: 56
84170 CACCAACTTG
** ** * *
84180 TGTGGGCTTTTGAAAGGGTTACACCAACTTATGTGCTTTTG-AAGGTTGCCACTGACT
1 TGTGGGCTTTTG-AAGGGTGCCACTGACTTGTGGGCTTTTGAAAGG-TGCCACTGACT
* *
84237 TATGGGC-TTTGAAAAGGGTGCCACTGACTTGTGGGC-TTTGAAAGAGGTGCCACCGACT
1 TGTGGGCTTTTG--AAGGGTGCCACTGACTTGTGGGCTTTTG-AA-AGGTGCCACTGACT
* * *
84295 TGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTGACT
1 TGTGGGCTTTTGAAGGGTGCCACTGACTTGTGGGCTTTTG-AAAGGTGCCACTGACT
* * * *
84352 TGTGCGCTTTTGAAGGTTGCTACTAACTTGTGGGC-TTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTTGAAGGGTGCCACTGACTTGTGGGCTTTTG-AAAGGTGCCACTGACT
* *
84408 TGTGGGC-TTTGAAAAGGTGCTACTGACTTGTGGGC-TTTGAAA
1 TGTGGGCTTTTG-AAGGGTGCCACTGACTTGTGGGCTTTTGAAA
84450 AGGGTAAGGA
Statistics
Matches: 184, Mismatches: 22, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
55 7 0.04
56 57 0.31
57 90 0.49
58 23 0.12
59 7 0.04
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (56 bp):
TGTGGGCTTTTGAAGGGTGCCACTGACTTGTGGGCTTTTGAAAGGTGCCACTGACT
Found at i:84450 original size:28 final size:28
Alignment explanation
Indices: 84221--84452 Score: 301
Period size: 28 Copynumber: 8.1 Consensus size: 28
84211 TGTGCTTTTG
*
84221 AAGGTTGCCACTGACTTATGGGCTTTGAA
1 AAGG-TGCCACTGACTTGTGGGCTTTGAA
84250 AAGGGTGCCACTGACTTGTGGGCTTTGAA
1 AA-GGTGCCACTGACTTGTGGGCTTTGAA
*
84279 AGAGGTGCCACCGACTTGTGGGCTTTTG--
1 A-AGGTGCCACTGACTTGTGGGC-TTTGAA
84307 AAGGTTGCCACTGACTTGTGGGCTTTGGAA
1 AAGG-TGCCACTGACTTGTGGGCTTT-GAA
* *
84337 AAGATGCCACTGACTTGTGCGCTTTTG--
1 AAGGTGCCACTGACTTGTGGGC-TTTGAA
* *
84364 AAGGTTGCTACTAACTTGTGGGCTTTGAA
1 AAGG-TGCCACTGACTTGTGGGCTTTGAA
84393 AAGGTGCCACTGACTTGTGGGCTTTGAA
1 AAGGTGCCACTGACTTGTGGGCTTTGAA
*
84421 AAGGTGCTACTGACTTGTGGGCTTTGAA
1 AAGGTGCCACTGACTTGTGGGCTTTGAA
84449 AAGG
1 AAGG
84453 GTAAGGAATG
Statistics
Matches: 180, Mismatches: 12, Indels: 23
0.84 0.06 0.11
Matches are distributed among these distances:
27 13 0.07
28 87 0.48
29 67 0.37
30 13 0.07
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.30
Consensus pattern (28 bp):
AAGGTGCCACTGACTTGTGGGCTTTGAA
Found at i:99969 original size:20 final size:20
Alignment explanation
Indices: 99944--99981 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
99934 ATGTATCAAT
99944 ATAATGTATCGATACATTGA
1 ATAATGTATCGATACATTGA
99964 ATAATGTATCGATACATT
1 ATAATGTATCGATACATT
99982 TCCTTAGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (20 bp):
ATAATGTATCGATACATTGA
Found at i:100061 original size:21 final size:19
Alignment explanation
Indices: 100010--100063 Score: 54
Period size: 21 Copynumber: 2.7 Consensus size: 19
100000 TAGCGATACA
100010 TTGTATCGATACAATACTT
1 TTGTATCGATACAATACTT
* * * *
100029 ATGTTTCAATACATTTACTGT
1 TTGTATCGATACA-ATACT-T
100050 TTGTATCGATACAA
1 TTGTATCGATACAA
100064 ATTGTTGAAA
Statistics
Matches: 25, Mismatches: 8, Indels: 3
0.69 0.22 0.08
Matches are distributed among these distances:
19 10 0.40
20 4 0.16
21 11 0.44
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.43
Consensus pattern (19 bp):
TTGTATCGATACAATACTT
Found at i:100534 original size:19 final size:20
Alignment explanation
Indices: 100491--100543 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
100481 TGCCAGTTTT
* * *
100491 ATGTAACGATACAATTATTC
1 ATGTATCGATACAATGATGC
100511 ATGTATCGATACAATGA-GC
1 ATGTATCGATACAATGATGC
100530 ATGTATCGATACAA
1 ATGTATCGATACAA
100544 AGCAATATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (20 bp):
ATGTATCGATACAATGATGC
Found at i:100555 original size:20 final size:19
Alignment explanation
Indices: 100510--100561 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
100500 TACAATTATT
* *
100510 CATGTATCGATACAATGAG
1 CATGTATCGATACAAAGAA
100529 CATGTATCGATACAAAGCAA
1 CATGTATCGATACAAAG-AA
*
100549 TATGTATCGATAC
1 CATGTATCGATAC
100562 TTCTGGGCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.27
Consensus pattern (19 bp):
CATGTATCGATACAAAGAA
Found at i:101193 original size:16 final size:16
Alignment explanation
Indices: 101172--101204 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
101162 TTTTCAATAT
*
101172 ATAAAACTCCCTCTTA
1 ATAAAACTCCCCCTTA
101188 ATAAAACTCCCCCTTA
1 ATAAAACTCCCCCTTA
101204 A
1 A
101205 GAAGATATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.33, G:0.00, T:0.27
Consensus pattern (16 bp):
ATAAAACTCCCCCTTA
Found at i:108977 original size:13 final size:13
Alignment explanation
Indices: 108959--108983 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
108949 CATTTTACTA
108959 TGTATCGATACAT
1 TGTATCGATACAT
108972 TGTATCGATACA
1 TGTATCGATACA
108984 ATGTCTCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:108981 original size:33 final size:33
Alignment explanation
Indices: 108939--109003 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
108929 TAGGGCTCAA
* *
108939 TGTAACGATACATTTTACT-ATGTATCGATACAT
1 TGTAACGATACAATGT-CTCATGTATCGATACAT
*
108972 TGTATCGATACAATGTCTCATGTATCGATACA
1 TGTAACGATACAATGTCTCATGTATCGATACA
109004 AACAGTGATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 2 0.07
33 26 0.93
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (33 bp):
TGTAACGATACAATGTCTCATGTATCGATACAT
Found at i:109056 original size:20 final size:20
Alignment explanation
Indices: 109031--109068 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
109021 TACTGTCAGT
109031 TTCATGTATCGATACAATTG
1 TTCATGTATCGATACAATTG
109051 TTCATGTATCGATACAAT
1 TTCATGTATCGATACAAT
109069 AAGCATGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (20 bp):
TTCATGTATCGATACAATTG
Found at i:109077 original size:19 final size:19
Alignment explanation
Indices: 109032--109086 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
109022 ACTGTCAGTT
*
109032 TCATGTATCGATACAATTG
1 TCATGTATCGATACAATAG
109051 TTCATGTATCGATACAATAAG
1 -TCATGTATCGATACAAT-AG
*
109072 -CATGTATCAATACAA
1 TCATGTATCGATACAA
109087 AGCAATATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
19 14 0.44
20 17 0.53
21 1 0.03
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (19 bp):
TCATGTATCGATACAATAG
Found at i:109117 original size:20 final size:21
Alignment explanation
Indices: 109094--109132 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
109084 CAAAGCAATA
109094 TGTATCGATA-TTTCTAGGCT
1 TGTATCGATACTTTCTAGGCT
*
109114 TGTATTGATACTTTCTAGG
1 TGTATCGATACTTTCTAGG
109133 GTTTTGACCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.21, C:0.13, G:0.21, T:0.46
Consensus pattern (21 bp):
TGTATCGATACTTTCTAGGCT
Found at i:110163 original size:316 final size:317
Alignment explanation
Indices: 109458--110293 Score: 713
Period size: 305 Copynumber: 2.7 Consensus size: 317
109448 TCGTCGGTCC
* * * *
109458 ACTTTTATGCTGACGGTAGGCATTTAGGATAGGTTCATCCCTTTTAAAACCTTTTTTAAGTCCTT
1 ACTTTTATGCCGAAGGTAGGCATTTAGGATAGGTTCATCCCATTTAAAACCCTTTTTAAGTCCTT
** * * * * * * *
109523 TAGGGGTATCGGGATACTTTCACGTTGAAGGTAT-CCCATAGAGG-CATTTTCGTAA--TTTCTT
66 TAAAGGTACCGAGATACTTTCACGTCGAACGTATACCCCTAG-GGATATTTTCATAATTTTTCTT
* ** *** * * * * * *
109584 AGAACCAACTCCTAGGTTGTCGTTAGGACTACTTTTATGTCGAAGGTAGGAATTTAGGATAGGTT
130 AGAACCAACTCCTAAGTCATCACGAGGTCCACTGTTATGCCGAAGGTAAGCATTTAGGATAGGTT
** * ** * * * * * * *
109649 -AAAACC-CTT------TTTTTAAGTCCTTTAGGGGTAC-GGGTATATTTTTATATCAAAGGTAT
195 CATCACCATTTCAAGCCTTTTTAAAACTTTTATGGGTACTAGG-ATACTTTCACATCGAAGGTAT
* * * * ** **
109705 -CCCTTAGGGGTATTTTCATAATTTTTTTTAGAATCGAGTTTTAGTCATCGTCGAGTCT
259 ACTCGTAGGGATATTTTCATAATTTTTTTTAGAACCGAGTCCTAGTCATCACCGAGTCT
* * * *
109763 ATTTTTATGTCGAAGGTAGGCATTTAGGATAGGTTCATCCCTTTTAAAACCCTTTTTAAGTGCTT
1 ACTTTTATGCCGAAGGTAGGCATTTAGGATAGGTTCATCCCATTTAAAACCCTTTTTAAGTCCTT
* * *
109828 TAAAGGTACCGATATACTTTCACGTCGAAGGTGT-CCCCTAAGGG-TATTTTCATAATTTTT-TC
66 TAAAGGTACCGAGATACTTTCACGTCGAACGTATACCCCT-AGGGATATTTTCATAATTTTTCT-
* * ** * **
109890 TAGAACTAACTCCTAAGTCATCACGGGGTCTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGT
129 TAGAACCAACTCCTAAGTCATCACGAGGTCCACTGTTATGCCGAAGGTAAGCATTTAGGATAGGT
109955 TCATC-CCATTTCAAGCCTTTTTAAAACTTTTATGGGTACTAGGATACTTTCACATCGAAGGTAT
194 TCATCACCATTTCAAGCCTTTTTAAAACTTTTATGGGTACTAGGATACTTTCACATCGAAGGTAT
* * *
110019 ACTCGTAGGGATATTTTTATAATTTTTTTTAGAACCGAGTCCTAGGTTATCACCGAGTTT
259 ACTCGTAGGGATATTTTCATAATTTTTTTTAGAACCGAGTCCTA-GTCATCACCGAGTCT
* * ** **
110079 GCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCACCATTT-CTAGTCTTTTTAAGTCCT
1 ACTTTTATGCCGAAGGTAGGCATTTAGGATAGGTTCATC-CCATTTAAAACCCTTTTTAAGTCCT
* ** * * * *
110143 TT-AGGGTTGTCGGGATACTTTTACGTCGAACGTATACTCGTAGGGATATTTTCATAATTTTTCT
65 TTAAAGG-TACCGAGATACTTTCACGTCGAACGTATACCCCTAGGGATATTTTCATAATTTTTCT
* ** * * * *
110207 TAGAACCAAGTCCTAAGTTTTCACTAGGTCCACTGTTATGCCGGAGGTAAGTATTTAGGATATGT
129 TAGAACCAACTCCTAAGTCATCACGAGGTCCACTGTTATGCCGAAGGTAAGCATTTAGGATAGGT
* *
110272 TCATCACCATTTCTAGTCTTTT
194 TCATCACCATTTCAAGCCTTTT
110294 ATGTCGTCAC
Statistics
Matches: 422, Mismatches: 88, Indels: 29
0.78 0.16 0.05
Matches are distributed among these distances:
305 101 0.24
306 3 0.01
307 58 0.14
308 3 0.01
314 35 0.08
315 41 0.10
316 86 0.20
317 80 0.19
318 15 0.04
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (317 bp):
ACTTTTATGCCGAAGGTAGGCATTTAGGATAGGTTCATCCCATTTAAAACCCTTTTTAAGTCCTT
TAAAGGTACCGAGATACTTTCACGTCGAACGTATACCCCTAGGGATATTTTCATAATTTTTCTTA
GAACCAACTCCTAAGTCATCACGAGGTCCACTGTTATGCCGAAGGTAAGCATTTAGGATAGGTTC
ATCACCATTTCAAGCCTTTTTAAAACTTTTATGGGTACTAGGATACTTTCACATCGAAGGTATAC
TCGTAGGGATATTTTCATAATTTTTTTTAGAACCGAGTCCTAGTCATCACCGAGTCT
Found at i:110204 original size:159 final size:156
Alignment explanation
Indices: 109458--110293 Score: 599
Period size: 158 Copynumber: 5.4 Consensus size: 156
109448 TCGTCGGTCC
* * * * *
109458 ACTTTTATGCTGACGGTAGGCATTTAGGATAGGTTCATCCCTTTTAAAACCTTTTTTAAGTCCTT
1 ACTTTTATGCCGAAGGTAGGCATTTAGGATAGGTTCATCCCATTTCAAGCC-TTTTTAAGTCCTT
* * * * * * *
109523 TAGGGGTATCGGGATACTTTCACGTTGAAGGTATCCCATAGAGG-CATTTTCGTAA--TTTCTTA
65 TA-GGGTGTCGGGATACTTTCACATCGAAGGTATCCCGTAG-GGATATTTTCATAATTTTTTTTA
* * ** *** *
109585 GAACCAACTCCTAGGTTGTC-GTTAGGACT
128 GAACCAAGTCCTAAGTCATCACCGA-GTCT
* * * *
109614 ACTTTTATGTCGAAGGTAGGAATTTAGGATAGGTTAAAACCC--TT------TTTTTAAGTCCTT
1 ACTTTTATGCCGAAGGTAGGCATTTAGGATAGGTT-CATCCCATTTCAAGCCTTTTTAAGTCCTT
* * * * * *
109671 TAGGG-GTACGGGTATATTTTTATATCAAAGGTATCCCTTAGGGGTATTTTCATAATTTTTTTTA
65 TAGGGTGT-CGGG-ATACTTTCACATCGAAGGTATCCCGTAGGGATATTTTCATAATTTTTTTTA
* * * * **
109735 GAATCGAGT-TTTAGTCATCGTCGAGTCT
128 GAACCAAGTCCTAAGTCATCACCGAGTCT
* * * * * *
109763 ATTTTTATGTCGAAGGTAGGCATTTAGGATAGGTTCATCCCTTTTAAAACCCTTTTTAAGTGCTT
1 ACTTTTATGCCGAAGGTAGGCATTTAGGATAGGTTCATCCCATTT-CAAGCCTTTTTAAGTCCTT
* ** ** * * * *
109828 TAAAGGTACCGATATACTTTCACGTCGAAGGTGTCCCCTAAGGG-TATTTTCATAATTTTTTCTA
65 T-AGGGTGTCGGGATACTTTCACATCGAAGGTATCCCGT-AGGGATATTTTCATAATTTTTTTTA
* * * *
109892 GAACTAACTCCTAAGTCATCACGGGGTCT
128 GAACCAAGTCCTAAGTCATCACCGAGTCT
* * ** *
109921 GCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCCCATTTCAAGCCTTTTTAAAACTTTT
1 ACTTTTATGCCGAAGGTAGGCATTTAGGATAGGTTCATCCCATTTCAAGCCTTTTTAAGTCCTTT
* * * *
109986 ATGGGT-ACTAGGATACTTTCACATCGAAGGTATACTCGTAGGGATATTTTTATAATTTTTTTTA
66 A-GGGTGTC-GGGATACTTTCACATCGAAGGTAT-CCCGTAGGGATATTTTCATAATTTTTTTTA
* * * *
110050 GAACCGAGTCCTAGGTTATCACCGAGTTT
128 GAACCAAGTCCTAAGTCATCACCGAGTCT
* * * *
110079 GCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCACCATTTCTAGTCTTTTTAAGTCCTT
1 ACTTTTATGCCGAAGGTAGGCATTTAGGATAGGTTCATC-CCATTTCAAGCCTTTTTAAGTCCTT
* * * * *
110144 TAGGGTTGTCGGGATACTTTTACGTCGAACGTATACTCGTAGGGATATTTTCATAATTTTTCTTA
65 TAGGG-TGTCGGGATACTTTCACATCGAAGGTAT-CCCGTAGGGATATTTTCATAATTTTTTTTA
** * *
110209 GAACCAAGTCCTAAGTTTTCA-CTAGGTCC
128 GAACCAAGTCCTAAGTCATCACCGA-GTCT
* * * * * * *
110238 ACTGTTATGCCGGAGGTAAGTATTTAGGATATGTTCATCACCATTTCTAGTCTTTT
1 ACTTTTATGCCGAAGGTAGGCATTTAGGATAGGTTCATC-CCATTTCAAGCCTTTT
110294 ATGTCGTCAC
Statistics
Matches: 540, Mismatches: 112, Indels: 53
0.77 0.16 0.08
Matches are distributed among these distances:
146 1 0.00
147 9 0.02
148 49 0.09
149 41 0.08
150 15 0.03
155 2 0.00
156 33 0.06
157 100 0.19
158 148 0.27
159 141 0.26
160 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (156 bp):
ACTTTTATGCCGAAGGTAGGCATTTAGGATAGGTTCATCCCATTTCAAGCCTTTTTAAGTCCTTT
AGGGTGTCGGGATACTTTCACATCGAAGGTATCCCGTAGGGATATTTTCATAATTTTTTTTAGAA
CCAAGTCCTAAGTCATCACCGAGTCT
Found at i:110687 original size:158 final size:156
Alignment explanation
Indices: 110300--110695 Score: 462
Period size: 158 Copynumber: 2.5 Consensus size: 156
110290 TTTTATGTCG
* **
110300 TCACCAGGTCTG-TTTTTATGTCGAAAATGGGCATTTAGGATAGGTTCATCCCTTTTATGTGTCT
1 TCACCAGGTC-GCTTTTT-TATCGAAGGTGGGCATTTAGGATAGGTTCATCCCTTTTATGTGTCT
* * * * *
110364 TTTCAAGTCTTTTAGGGTTGCCAAGATACTTTTACGTCAAAGGTATACTCGTAGGGACATTTTCA
64 TTTCAAGTCCTTTAGGGTTGCCAACATACTGTTACATCAAAGGTATACTCATAGGGACATTTTCA
*
110429 TAATTTTTTATAACCAACGCCTAGGTCA
129 TAATTTTTTAAAACCAACGCCTAGGTCA
*
110457 TCACCAGGTCTGCTTTTTTGTCGAAGGTGGGCATTTAGGATAGGTTCATCCCTTTTATGTGTCTT
1 TCACCAGGTC-GCTTTTTTATCGAAGGTGGGCATTTAGGATAGGTTCATCCCTTTTATGTGTCTT
* * * ** **
110522 TTCAAGTCCTTTAGGGTTGCCATCATACTGTTACATCGAATGTATACCTCATAGGGGTATTTTGG
65 TTCAAGTCCTTTAGGGTTGCCAACATACTGTTACATCAAAGGTATA-CTCATAGGGACATTTTCA
* * *
110587 TAATTTTTTAAAATCAA-GTCTTAGGTTA
129 TAATTTTTTAAAACCAACG-CCTAGGTCA
110615 TCACC-GAGTC-CTTTTTTATGCTGAAGGTGGGTC-TTTAGGATAGGTTCATCCCTTTTATAGT-
1 TCACCAG-GTCGCTTTTTTAT-C-GAAGGTGGG-CATTTAGGATAGGTTCATCCCTTTTAT-GTG
* *
110676 CCTTTTTAAGTCCTTTAGGG
61 TCTTTTCAAGTCCTTTAGGG
110696 ATATTAGGTA
Statistics
Matches: 210, Mismatches: 21, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
156 8 0.04
157 99 0.47
158 100 0.48
159 3 0.01
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.40
Consensus pattern (156 bp):
TCACCAGGTCGCTTTTTTATCGAAGGTGGGCATTTAGGATAGGTTCATCCCTTTTATGTGTCTTT
TCAAGTCCTTTAGGGTTGCCAACATACTGTTACATCAAAGGTATACTCATAGGGACATTTTCATA
ATTTTTTAAAACCAACGCCTAGGTCA
Found at i:114179 original size:15 final size:15
Alignment explanation
Indices: 114161--114224 Score: 58
Period size: 15 Copynumber: 4.3 Consensus size: 15
114151 AATTTCCTCT
*
114161 AAAAAAAGAGAAGAA
1 AAAAAAAGAAAAGAA
114176 AAAAAAAGAAAAGAA
1 AAAAAAAGAAAAGAA
** *
114191 AAATGAA-AAAGGAA
1 AAAAAAAGAAAAGAA
* * *
114205 AAAACATGAAATGAA
1 AAAAAAAGAAAAGAA
114220 AAAAA
1 AAAAA
114225 GAAAGTGCAA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
14 10 0.26
15 29 0.74
ACGTcount: A:0.78, C:0.02, G:0.16, T:0.05
Consensus pattern (15 bp):
AAAAAAAGAAAAGAA
Found at i:115364 original size:88 final size:87
Alignment explanation
Indices: 115262--115534 Score: 207
Period size: 87 Copynumber: 3.2 Consensus size: 87
115252 CGTTATTCTA
* ** * * *
115262 TTGATGCTTGCATTTATGTTGTCTCACCTACATTTGCATTTTAGATGACATTAGTATTTGCATCA
1 TTGATGCTTGCATTTATATCATCTCACATACATTTGCA-TTCAGATAACATTAGTATTTGCATCA
*
115327 TTGCATATGCGTTTGCCCCTTTG
65 TTGCATATGCATTTGCCCCTTTG
* * * * * *
115350 TTGATGCTTTCATTTATATCATTTTACATGCATTTGCATTCAGATAACATTGGTATTTGTATCAT
1 TTGATGCTTGCATTTATATCATCTCACATACATTTGCATTCAGATAACATTAGTATTTGCATCAT
*
115415 TTCATATGCATTTGCCACC----
66 TGCATATGCATTTGCC-CCTTTG
* * ** * * * * ** * *
115434 -TGATGCTTGTATTTGTATTGTTTCATATATATTTGCATATCACACGACATCAGTATCTGCATCA
1 TTGATGCTTGCATTTATATCATCTCACATACATTTGCAT-TCAGATAACATTAGTATTTGCATCA
* * * *
115498 TTCCATATGCAGTTG-CCTTTTA
65 TTGCATATGCATTTGCCCCTTTG
115520 TTGATGCTTGCATTT
1 TTGATGCTTGCATTT
115535 GTGTTATTTC
Statistics
Matches: 144, Mismatches: 34, Indels: 15
0.75 0.18 0.08
Matches are distributed among these distances:
82 1 0.01
83 30 0.21
84 31 0.22
87 50 0.35
88 32 0.22
ACGTcount: A:0.22, C:0.18, G:0.15, T:0.45
Consensus pattern (87 bp):
TTGATGCTTGCATTTATATCATCTCACATACATTTGCATTCAGATAACATTAGTATTTGCATCAT
TGCATATGCATTTGCCCCTTTG
Found at i:116006 original size:90 final size:91
Alignment explanation
Indices: 115790--116006 Score: 305
Period size: 90 Copynumber: 2.4 Consensus size: 91
115780 AAGGGAAATC
* *
115790 GTGCAACCCACACATTCCTAATCATATCC-CTTTCATCCAACCACTAAATGGTATTGATACATCA
1 GTGCAGCCTACACATTCCTAATCATATCCTCTTTCATCCAACCACTAAATGGTATTGATACATCA
*
115854 CCAAGCCTGATTTCCTTTGGGGCAAG
66 CCAAACCTGATTTCCTTTGGGGCAAG
* * *
115880 GTGCAGCCTACATATTCCCAATCATATCCT-TTTCATCCAACCACTAGATGGTATTGATACATCA
1 GTGCAGCCTACACATTCCTAATCATATCCTCTTTCATCCAACCACTAAATGGTATTGATACATCA
* * * *
115944 CTAAACTTGATTTCTTTTTGGGCAAG
66 CCAAACCTGATTTCCTTTGGGGCAAG
* *
115970 GTGCAGCCTACACATTTCTAATCATA-CCTCTCTCATC
1 GTGCAGCCTACACATTCCTAATCATATCCTCTTTCATC
116007 AGGCTACTAA
Statistics
Matches: 111, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
89 3 0.03
90 108 0.97
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.31
Consensus pattern (91 bp):
GTGCAGCCTACACATTCCTAATCATATCCTCTTTCATCCAACCACTAAATGGTATTGATACATCA
CCAAACCTGATTTCCTTTGGGGCAAG
Found at i:116250 original size:35 final size:35
Alignment explanation
Indices: 116199--116267 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
116189 CAATCAAATT
* * *
116199 TTCCCATCACCGTTTGACTGTATCTGGTTAAACTC
1 TTCCCACCACCATTTGACTGTATCTGGTCAAACTC
116234 TTCCCACCACCATTTGACTGTATCTGGTCAAACT
1 TTCCCACCACCATTTGACTGTATCTGGTCAAACT
116268 TTGTTCATCT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.22, C:0.30, G:0.13, T:0.35
Consensus pattern (35 bp):
TTCCCACCACCATTTGACTGTATCTGGTCAAACTC
Done.