Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1911

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12978
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27


Found at i:10423 original size:20 final size:20

Alignment explanation


    Indices: 10398--10449  Score: 104
    Period size: 20  Copynumber: 2.6  Consensus size: 20

      10388 TTTGCCTGCA

                                
      10398 TGTATCGATACAAAGATCAG
          1 TGTATCGATACAAAGATCAG

                                
      10418 TGTATCGATACAAAGATCAG
          1 TGTATCGATACAAAGATCAG

                        
      10438 TGTATCGATACA
          1 TGTATCGATACA

      10450 TCTGGGCAAA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   32  1.00

ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27


Consensus pattern (20 bp):   
TGTATCGATACAAAGATCAG
Done.