Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1914
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18201
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Found at i:41 original size:2 final size:2
Alignment explanation
Indices: 34--60 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24 CTACAAGTAA
34 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
61 CACACACTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1986 original size:30 final size:29
Alignment explanation
Indices: 1952--2036 Score: 91
Period size: 30 Copynumber: 2.9 Consensus size: 29
1942 ATATCTTAAA
*
1952 TTATTTTATTTTAAATAAATTTTTATATTT
1 TTATTTTA-TCTAAATAAATTTTTATATTT
* *
1982 TTATTATA-CGTAAATAAATTTTTATCTTT
1 TTATTTTATC-TAAATAAATTTTTATATTT
* *
2011 TGATTTGTATCTAAATAAGTTTTTAT
1 TTATTT-TATCTAAATAAATTTTTAT
2037 TATGAAATTT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
29 22 0.48
30 23 0.50
31 1 0.02
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.59
Consensus pattern (29 bp):
TTATTTTATCTAAATAAATTTTTATATTT
Found at i:2122 original size:30 final size:28
Alignment explanation
Indices: 2062--2148 Score: 86
Period size: 30 Copynumber: 3.0 Consensus size: 28
2052 TATATTAAGG
* *
2062 TTTACTTAAATATAATTAAATATT-AAAA
1 TTTA-TTAAATACAATTAAAAATTAAAAA
*
2090 TTTATTCAAATACAAGTTAAAGATTAAAAA
1 TTTATT-AAATACAA-TTAAAAATTAAAAA
*
2120 TTTATTATGATACAAATTAAAAATTAAAA
1 TTTATTA-AATAC-AATTAAAAATTAAAA
2149 CAATATTAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
27 2 0.04
28 11 0.22
29 9 0.18
30 26 0.52
31 2 0.04
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (28 bp):
TTTATTAAATACAATTAAAAATTAAAAA
Found at i:2156 original size:30 final size:30
Alignment explanation
Indices: 2099--2156 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
2089 ATTTATTCAA
* * *
2099 ATACAAGTTAAAGATTAAAAATTTATTATG
1 ATACAAATTAAAAATTAAAAATATATTATG
2129 ATACAAATTAAAAATTAAAACA-ATATTA
1 ATACAAATTAAAAATTAAAA-ATATATTA
2157 ATACGTAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (30 bp):
ATACAAATTAAAAATTAAAAATATATTATG
Found at i:2718 original size:2 final size:2
Alignment explanation
Indices: 2711--2745 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
2701 GCTTTTGATA
2711 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2746 CACCTAACTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:3224 original size:11 final size:11
Alignment explanation
Indices: 3208--3417 Score: 62
Period size: 10 Copynumber: 19.8 Consensus size: 11
3198 ATTGATAATT
*
3208 TTATATTTGTA
1 TTATATTTATA
*
3219 TTATATGTATA
1 TTATATTTATA
*
3230 TTA-ATTTTTA
1 TTATATTTATA
3240 TT-TA-TTA-A
1 TTATATTTATA
*
3248 TTATATGTA-A
1 TTATATTTATA
*
3258 -AATATTTATA
1 TTATATTTATA
3268 -T-T-TTTATA
1 TTATATTTATA
**
3276 AAAT-TTGATATA
1 TTATATT--TATA
*
3288 TTATAATTTTTA
1 TTAT-ATTTATA
3300 TTATATATT-TAA
1 TTATAT-TTAT-A
*
3312 TATATTTTTATATA
1 T-TATATTTA--TA
3326 TTATATTTAT-
1 TTATATTTATA
* *
3336 TTTTATATATA
1 TTATATTTATA
*
3347 TCATATTTTATA
1 TTATA-TTTATA
3359 TTAATATTGTA-A
1 TT-ATATT-TATA
*
3371 TTAT-TTTTTA
1 TTATATTTATA
*
3381 -TATAATTATA
1 TTATATTTATA
3391 TTAT-TTTATA
1 TTATATTTATA
3401 -TA-A-TTATA
1 TTATATTTATA
3409 TTATATTTA
1 TTATATTTA
3418 AAATTATCAT
Statistics
Matches: 147, Mismatches: 25, Indels: 54
0.65 0.11 0.24
Matches are distributed among these distances:
8 14 0.10
9 19 0.13
10 36 0.24
11 27 0.18
12 30 0.20
13 16 0.11
14 4 0.03
15 1 0.01
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (11 bp):
TTATATTTATA
Found at i:3288 original size:26 final size:29
Alignment explanation
Indices: 3259--3318 Score: 74
Period size: 26 Copynumber: 2.2 Consensus size: 29
3249 TATATGTAAA
*
3259 ATATTTAT-ATTTTTA-TA-AAATTTGAT
1 ATATTTATAATTTTTATTATAAATTTAAT
*
3285 ATA-TTATAATTTTTATTATATATTTAAT
1 ATATTTATAATTTTTATTATAAATTTAAT
3313 ATATTT
1 ATATTT
3319 TTATATATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
25 4 0.14
26 10 0.36
27 2 0.07
28 10 0.36
29 2 0.07
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (29 bp):
ATATTTATAATTTTTATTATAAATTTAAT
Found at i:3382 original size:59 final size:57
Alignment explanation
Indices: 3283--3418 Score: 165
Period size: 59 Copynumber: 2.4 Consensus size: 57
3273 ATAAAATTTG
3283 ATATATTATAATTTT-TATTATATATTTAATATATTTTTATAT-ATTATATTTATTTTTAT
1 ATATATTAT-ATTTTATATTA-ATATTTAATATATTTTTATATAATTATA-TTA-TTTTAT
*
3342 ATATATCATATTTTATATTAATATTGTAAT-TATTTTTTATATAATTATATTATTTTAT
1 ATATATTATATTTTATATTAATATT-TAATATA-TTTTTATATAATTATATTATTTTAT
*
3400 ATA-ATTATATTATAT-TTAA
1 ATATATTATATTTTATATTAA
3419 AATTATCATA
Statistics
Matches: 70, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
56 4 0.06
57 10 0.14
58 21 0.30
59 29 0.41
60 6 0.09
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.61
Consensus pattern (57 bp):
ATATATTATATTTTATATTAATATTTAATATATTTTTATATAATTATATTATTTTAT
Found at i:3427 original size:77 final size:79
Alignment explanation
Indices: 3285--3453 Score: 190
Period size: 77 Copynumber: 2.1 Consensus size: 79
3275 AAAATTTGAT
* * *
3285 ATATTATAATT-TTTATTATATATTTAATATATTTTTATATATTATATTTATTTTTATATATATC
1 ATATT-TAATTATTTATTATATAATTAATATATTTTTATATATTATATTTATTTTAAAATATATC
3349 ATAT-TT-TATATTA
65 ATATATTATATATTA
*
3362 ATATTGTAATTATTTTTTATATAATT-ATAT-TATTTTATATAATTATA-TTATATTTAAAAT-T
1 ATATT-TAATTATTTATTATATAATTAATATAT-TTTTATAT-ATTATATTTAT-TTTAAAATAT
3423 ATCATATAAATTATATATTA
62 ATCATAT--ATTATATATTA
3443 ATATTTAATTA
1 ATATTTAATTA
3454 AGTATATTTT
Statistics
Matches: 79, Mismatches: 5, Indels: 13
0.81 0.05 0.13
Matches are distributed among these distances:
76 1 0.01
77 34 0.43
78 24 0.30
80 8 0.10
81 12 0.15
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.59
Consensus pattern (79 bp):
ATATTTAATTATTTATTATATAATTAATATATTTTTATATATTATATTTATTTTAAAATATATCA
TATATTATATATTA
Found at i:3702 original size:23 final size:23
Alignment explanation
Indices: 3676--3729 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 23
3666 GCAACTCTAC
3676 AGAAAGAAAAATACAAAAACAGT
1 AGAAAGAAAAATACAAAAACAGT
*
3699 AG-AAGAAAATTACAAAAACAGT
1 AGAAAGAAAAATACAAAAACAGT
3721 A-AAA-AAAAA
1 AGAAAGAAAAA
3730 GATGAATTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 4 0.14
22 22 0.79
23 2 0.07
ACGTcount: A:0.72, C:0.07, G:0.11, T:0.09
Consensus pattern (23 bp):
AGAAAGAAAAATACAAAAACAGT
Found at i:4022 original size:24 final size:24
Alignment explanation
Indices: 3995--4041 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
3985 GATGTGCAAG
3995 AAATAAT-TAAAATATAAAATAAAA
1 AAATAATAT-AAATATAAAATAAAA
4019 AAATAATATAAATATAAAATAAA
1 AAATAATATAAATATAAAATAAA
4042 TATATAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 21 0.95
25 1 0.05
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (24 bp):
AAATAATATAAATATAAAATAAAA
Found at i:4037 original size:19 final size:19
Alignment explanation
Indices: 4005--4074 Score: 83
Period size: 19 Copynumber: 3.7 Consensus size: 19
3995 AAATAATTAA
4005 AATATAAA-ATAAAAAAAT
1 AATATAAATATAAAAAAAT
4023 AATATAAATATAAAATAAAT
1 AATATAAATATAAAA-AAAT
*
4043 -ATATAAATATATTAAAAAT
1 AATATAAATATA-AAAAAAT
*
4062 TATAT-AATATAAA
1 AATATAAATATAAA
4075 TTATTAGTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
18 9 0.20
19 27 0.59
20 10 0.22
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
AATATAAATATAAAAAAAT
Found at i:4039 original size:13 final size:12
Alignment explanation
Indices: 4002--4049 Score: 55
Period size: 13 Copynumber: 3.9 Consensus size: 12
3992 AAGAAATAAT
4002 TAAAATATAAAA
1 TAAAATATAAAA
4014 TAAAA-A-AATAA
1 TAAAATATAA-AA
4025 TATAAATATAAAA
1 TA-AAATATAAAA
4038 TAAATATATAAA
1 TAAA-ATATAAA
4050 TATATTAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
10 2 0.06
11 5 0.16
12 10 0.32
13 12 0.39
14 2 0.06
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (12 bp):
TAAAATATAAAA
Found at i:4048 original size:24 final size:24
Alignment explanation
Indices: 4004--4075 Score: 80
Period size: 24 Copynumber: 3.2 Consensus size: 24
3994 GAAATAATTA
* *
4004 AAATATAAAATAAAAAAATAATAT
1 AAATATAAAATAAATATATAATAT
4028 AAATATAAAATAAATATATAA-AT
1 AAATATAAAATAAATATATAATAT
* *
4051 --ATATTAAA-AATTATATAATAT
1 AAATATAAAATAAATATATAATAT
4072 AAAT
1 AAAT
4076 TATTAGTATA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
20 9 0.22
21 9 0.22
23 4 0.10
24 19 0.46
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (24 bp):
AAATATAAAATAAATATATAATAT
Found at i:5505 original size:38 final size:34
Alignment explanation
Indices: 5431--5508 Score: 92
Period size: 35 Copynumber: 2.4 Consensus size: 34
5421 GATGCAATAA
*
5431 AAATATATAAAAAATATTTTAAATTAAATATTAAT
1 AAATA-ATAAAAAATATTTTAAATAAAATATTAAT
5466 AAATAATAAATAAATATTTT-AA-AAAATA-TAAT
1 AAATAATAAA-AAATATTTTAAATAAAATATTAAT
*
5498 TAA-AATAAAAA
1 AAATAATAAAAA
5509 TATAATTACA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
30 2 0.05
31 6 0.15
32 6 0.15
33 5 0.12
34 7 0.17
35 14 0.35
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (34 bp):
AAATAATAAAAAATATTTTAAATAAAATATTAAT
Found at i:6145 original size:22 final size:20
Alignment explanation
Indices: 6093--6163 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
6083 TTATTATAAT
* *
6093 TATATATAT-AATTATTATA
1 TATATATATAAATTTTTAAA
*
6112 TATTTATATAAATTTTAATAAA
1 TATATATATAAATTTT--TAAA
*
6134 TATATATGTAAATTTTTAAA
1 TATATATATAAATTTTTAAA
*
6154 TATTTATATA
1 TATATATATA
6164 TTTATATTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
19 8 0.19
20 17 0.40
22 17 0.40
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.52
Consensus pattern (20 bp):
TATATATATAAATTTTTAAA
Found at i:6154 original size:30 final size:29
Alignment explanation
Indices: 6120--6176 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
6110 TATATTTATA
6120 TAAAT-TTTAATAAATATATATGTAAATTTT
1 TAAATATTT-ATAAATATATAT-TAAATTTT
* *
6150 TAAATATTTATATATTTATATTAAATT
1 TAAATATTTATAAATATATATTAAATT
6177 AGTAATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 6 0.25
30 15 0.62
31 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (29 bp):
TAAATATTTATAAATATATATTAAATTTT
Found at i:6190 original size:25 final size:24
Alignment explanation
Indices: 6162--6220 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 24
6152 AATATTTATA
6162 TATTTATATTAAATTAGTAATTTTT
1 TATTTATATTAAATT-GTAATTTTT
* *
6187 TATTTTATATTATATTTTAATTTTT
1 TA-TTTATATTAAATTGTAATTTTT
6212 TA-TTATATT
1 TATTTATATT
6221 TATATTAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 7 0.23
25 12 0.39
26 12 0.39
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (24 bp):
TATTTATATTAAATTGTAATTTTT
Found at i:6209 original size:18 final size:18
Alignment explanation
Indices: 6183--6221 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
6173 AATTAGTAAT
*
6183 TTTTTATTTTATATTATA
1 TTTTAATTTTATATTATA
*
6201 TTTTAATTTTTTATTATA
1 TTTTAATTTTATATTATA
6219 TTT
1 TTT
6222 ATATTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTAATTTTATATTATA
Found at i:6233 original size:26 final size:26
Alignment explanation
Indices: 6156--6234 Score: 74
Period size: 25 Copynumber: 3.0 Consensus size: 26
6146 TTTTTAAATA
6156 TTTA-TATATTTATATTAAATTAGTAATTT
1 TTTATTATATTTATATT-AA--A-TAATTT
* *
6185 TTTATTTTATATTATATT--TTAATTT
1 TTTATTATAT-TTATATTAAATAATTT
6210 TTTATTATATTTATATTAAATAATT
1 TTTATTATATTTATATTAAATAATT
6235 ATATAATATT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
24 7 0.17
25 15 0.36
26 5 0.12
29 4 0.10
30 4 0.10
31 7 0.17
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.63
Consensus pattern (26 bp):
TTTATTATATTTATATTAAATAATTT
Found at i:7024 original size:33 final size:31
Alignment explanation
Indices: 6982--7044 Score: 99
Period size: 33 Copynumber: 2.0 Consensus size: 31
6972 TTCCTTCAGC
*
6982 AAATCAATCTGATCTTATATTTAAAAAAAAAAA
1 AAATCAATCTGATCTTAGA--TAAAAAAAAAAA
7015 AAATCAATCTGATCTTAGATAAAAAAAAAA
1 AAATCAATCTGATCTTAGATAAAAAAAAAA
7045 CCAATTTCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 11 0.38
33 18 0.62
ACGTcount: A:0.59, C:0.10, G:0.05, T:0.27
Consensus pattern (31 bp):
AAATCAATCTGATCTTAGATAAAAAAAAAAA
Found at i:8759 original size:2 final size:2
Alignment explanation
Indices: 8752--8778 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8742 TCATAAGAAC
8752 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8779 GAGAGAGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8783 original size:2 final size:2
Alignment explanation
Indices: 8778--8806 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8768 ATATATATAT
8778 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
8807 TGTTTAACCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:9591 original size:27 final size:25
Alignment explanation
Indices: 9545--9595 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 25
9535 AAACAAGGTA
9545 TAAATATTAATATAAAATATTTTTT
1 TAAATATTAATATAAAATATTTTTT
9570 TAAA-ATTAATAATGAAACATATTTTT
1 TAAATATTAAT-AT-AAA-ATATTTTT
9596 AAATTTGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 6 0.26
25 6 0.26
26 3 0.13
27 8 0.35
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (25 bp):
TAAATATTAATATAAAATATTTTTT
Found at i:15649 original size:17 final size:17
Alignment explanation
Indices: 15567--15652 Score: 59
Period size: 17 Copynumber: 4.8 Consensus size: 17
15557 TTGTTATCTC
15567 AAATAAAATTTATACTTTAA
1 AAATAAAATTTAT--TTT-A
*
15587 AAATAAAATTTA-ATTA
1 AAATAAAATTTATTTTA
* ** *
15603 AATTCAAAATAAATTTGA
1 AAAT-AAAATTTATTTTA
15621 AACCAT-AAATTTATTTTA
1 AA--ATAAAATTTATTTTA
15639 AAATAAAATTTATT
1 AAATAAAATTTATT
15653 CTTTATATTT
Statistics
Matches: 51, Mismatches: 10, Indels: 13
0.69 0.14 0.18
Matches are distributed among these distances:
16 6 0.12
17 17 0.33
18 15 0.29
20 13 0.25
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.40
Consensus pattern (17 bp):
AAATAAAATTTATTTTA
Found at i:16284 original size:26 final size:25
Alignment explanation
Indices: 16236--16294 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
16226 GATTTGATGC
*
16236 ATCTTTAATTATGATTAATTAATTGT
1 ATCTTTAATTATGATTAACTAATT-T
*
16262 ATCTTTAATTATCG-TTAGCTAATTT
1 ATCTTTAATTAT-GATTAACTAATTT
*
16287 TTCTTTAA
1 ATCTTTAA
16295 AAAAACACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 8 0.28
26 20 0.69
27 1 0.03
ACGTcount: A:0.31, C:0.08, G:0.07, T:0.54
Consensus pattern (25 bp):
ATCTTTAATTATGATTAACTAATTT
Found at i:17006 original size:23 final size:24
Alignment explanation
Indices: 16976--17036 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 24
16966 AATCTTAATA
*
16976 TATTATTATTAT-TTTT-ATATAT
1 TATTATAATTATATTTTCATATAT
*
16998 T-TT-TAATTAATATTTTCATATTT
1 TATTATAATT-ATATTTTCATATAT
17021 TATTATAATTATATTT
1 TATTATAATTATATTT
17037 AAATTTAACT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
20 4 0.12
21 4 0.12
22 5 0.16
23 6 0.19
24 8 0.25
25 5 0.16
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (24 bp):
TATTATAATTATATTTTCATATAT
Done.