Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1915
Parameters: 2 7 7 80 10 50 1000
Length:  67281

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
912--948
19
1.9
19
88
0
56
18
0
78
2
0.87
910--948
10
4.0
10
83
6
53
20
0
76
2
0.90
3153--3275
43
2.8
44
91
3
187
26
18
14
40
1.89
4228--4282
1
55.0
1
94
0
83
94
0
1
3
0.36
4225--4284
29
2.1
29
100
0
120
86
0
3
10
0.67
4357--4424
19
3.9
19
78
21
85
35
11
14
38
1.83
4378--4402
13
1.9
13
100
0
50
36
16
16
32
1.90
4359--4421
32
2.0
32
96
0
117
34
12
15
36
1.86
4464--4489
13
2.0
13
100
0
52
30
15
15
38
1.88
4444--4510
33
2.0
33
88
0
98
25
14
16
43
1.86
6978--7053
27
2.8
28
86
6
93
25
34
19
21
1.96
6987--7053
28
2.4
27
87
7
91
23
35
17
22
1.95
7036--7206
51
3.3
51
79
4
198
28
26
11
32
1.92
7189--7270
28
2.9
28
80
7
87
25
31
15
26
1.96
12112--12232
44
2.8
44
97
0
224
22
19
15
42
1.88
12916--12942
13
2.1
13
100
0
54
62
0
0
37
0.95
14045--14091
16
2.9
16
81
9
51
46
2
2
48
1.25
14066--14100
18
1.9
18
88
0
52
48
0
2
48
1.16
14097--14137
14
2.7
16
85
11
59
31
2
0
65
1.05
14094--14156
20
3.2
20
80
8
69
31
1
1
65
1.12
14094--14155
14
4.8
12
75
18
54
30
1
1
66
1.11
15340--15427
10
8.6
10
68
17
56
48
0
1
50
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15342--15410
22
3.2
22
82
10
72
46
0
0
53
1.00
15342--15409
21
3.2
20
78
10
64
45
0
0
54
0.99
15342--15423
20
3.9
21
78
13
71
47
0
1
51
1.08
15371--15420
22
2.3
22
83
10
59
50
0
2
48
1.12
16745--16780
15
2.6
15
87
12
51
44
0
2
52
1.15
17248--17273
2
13.0
2
100
0
52
50
0
0
50
1.00
17558--17584
3
9.0
3
100
0
54
33
0
0
66
0.92
18023--18047
7
3.6
7
100
0
50
84
0
0
16
0.63
18190--18219
9
3.3
9
90
0
51
43
0
3
53
1.17
18185--18219
18
2.1
16
89
10
52
42
0
2
54
1.15
19724--19777
22
2.4
23
85
11
69
51
0
1
46
1.11
26923--26956
11
3.1
11
100
0
68
17
8
26
47
1.77
33518--33569
20
2.6
19
82
8
59
59
1
0
38
1.08
36839--36876
3
12.7
3
100
0
76
31
0
0
68
0.90
39426--39470
22
2.0
22
83
8
56
22
2
11
64
1.36
40334--40376
20
2.3
18
84
8
50
11
4
4
79
1.04
41221--41283
24
2.7
22
74
13
63
58
0
1
39
1.07
41224--41322
41
2.4
41
77
17
98
60
0
2
37
1.08
41311--41412
20
4.8
20
73
17
64
50
0
5
42
1.33
41545--41583
3
13.0
3
100
0
78
66
0
0
33
0.92
46163--46200
20
2.0
20
94
5
69
50
0
0
50
1.00
46450--46491
22
2.0
21
85
4
57
40
2
0
57
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47131--47319
95
1.9
99
84
11
253
42
6
8
41
1.63
47940--47972
2
16.5
2
100
0
66
51
0
0
48
1.00
48515--48558
3
14.7
3
100
0
88
31
0
0
68
0.90
49130--49168
21
1.9
21
89
5
62
76
0
5
17
0.96
49366--49436
27
2.6
27
89
8
117
50
15
0
33
1.44
54157--54215
26
2.2
27
87
9
93
35
5
1
57
1.31
55543--55582
16
2.5
17
88
12
66
45
0
5
50
1.23
57365--57405
15
2.7
15
84
0
55
43
7
0
48
1.30
59962--60027
27
2.4
27
85
7
80
27
6
18
48
1.71
60109--60154
20
2.3
20
88
0
65
10
50
4
34
1.57
64536--64616
28
2.9
27
82
12
101
22
7
23
46
1.76

Tables:   1

The End!