Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1916
Parameters: 2 7 7 80 10 50 1000
Length:  51937

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3225--3256
3
10.7
3
93
0
55
31
31
0
37
1.58
9847--9876
14
2.2
14
94
5
53
33
3
6
56
1.42
9900--9930
14
2.1
15
94
5
55
51
0
0
48
1.00
11243--11271
14
2.1
14
100
0
58
51
6
13
27
1.66
15793--15839
21
2.3
20
88
3
67
48
14
0
36
1.44
18834--18875
22
1.9
22
85
0
57
54
2
0
42
1.13
20027--20181
76
2.0
76
96
0
283
34
18
14
33
1.90
22474--22541
19
3.9
19
74
21
76
36
11
13
38
1.81
22476--22538
32
2.0
32
93
0
108
36
12
14
36
1.84
22561--22615
20
2.8
20
82
0
74
23
14
16
45
1.84
24945--25282
52
6.5
52
69
16
173
28
26
13
31
1.93
24943--25072
49
2.6
49
81
9
163
30
25
11
32
1.91
25056--25131
27
2.8
28
90
6
111
25
32
19
22
1.97
24950--25283
107
3.2
102
73
11
300
29
26
13
31
1.94
25266--25340
27
2.7
29
82
12
86
24
33
18
24
1.97
24945--25399
209
2.2
209
84
3
598
27
27
13
32
1.94
25297--25498
79
2.6
79
80
2
210
24
28
17
29
1.97
30882--30932
26
1.9
26
84
4
66
37
17
23
21
1.94
31085--31196
52
2.2
50
80
6
118
33
16
26
24
1.96
31181--31247
26
2.7
24
80
11
80
22
19
34
23
1.97
31181--31250
25
2.7
28
83
14
89
22
18
34
24
1.96
33687--33741
20
2.8
20
82
0
74
45
16
14
23
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33761--33828
19
3.9
18
73
23
74
38
13
11
36
1.81
33764--33826
32
2.0
32
93
0
108
36
14
12
36
1.84
36112--36266
76
2.0
76
97
0
292
32
14
18
34
1.91
37366--37422
28
2.0
28
83
6
71
47
0
1
50
1.11
37409--37455
23
2.1
22
84
4
58
40
0
2
57
1.11
39293--39333
17
2.6
16
85
11
57
56
2
0
41
1.13
40429--40475
21
2.3
20
88
3
67
36
0
14
48
1.44
40430--40475
20
2.2
19
85
14
56
34
0
15
50
1.44
44997--45025
14
2.1
14
100
0
58
27
13
6
51
1.66
45584--45621
17
2.2
18
85
4
51
34
0
7
57
1.28
46334--46364
14
2.1
15
94
5
55
48
0
0
51
1.00
46388--46417
14
2.2
14
94
5
53
56
6
3
33
1.42

Tables:   1

The End!