genome.fa.s1917.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1917
Parameters: 2 7 7 80 10 50 1000
Length:  56016

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16--204	51	3.7	50	80	5	175	30	13	12	44	1.80
3708--3738	14	2.2	14	100	0	62	45	0	6	48	1.28
4125--4268	39	3.7	38	78	3	137	46	8	0	44	1.38
4125--4268	38	3.7	38	80	5	139	46	8	0	44	1.38
4125--4268	77	1.9	77	84	5	193	46	8	0	44	1.38
4169--4327	39	4.1	40	77	9	125	44	9	1	44	1.44
4833--4875	14	2.9	15	86	10	61	39	9	6	44	1.64
6165--6210	23	2.0	23	86	4	65	34	2	2	60	1.21
7483--7541	23	2.6	23	76	15	68	52	3	3	40	1.35
7483--7540	22	2.6	21	74	20	55	51	3	3	41	1.35
7500--7547	22	2.2	22	81	7	53	50	2	4	43	1.33
11548--11785	97	2.5	97	87	0	352	34	11	27	26	1.91
15032--15168	61	2.2	61	87	6	197	37	10	27	23	1.88
15112--15590	49	10.0	49	77	8	439	33	16	25	24	1.96
15108--15590	147	3.4	141	82	5	540	33	16	25	24	1.96
15650--16131	27	15.9	32	81	10	438	36	12	30	20	1.90
15720--16131	86	4.7	87	75	14	269	35	12	30	21	1.91
15852--16140	91	3.3	90	81	10	330	35	12	30	21	1.90
16109--16259	63	2.4	63	80	6	180	33	13	27	25	1.94
16138--16286	30	4.9	30	76	12	126	30	14	30	24	1.95
16073--16307	33	7.4	32	75	12	148	34	13	28	22	1.93
17121--17177	13	3.9	13	76	24	60	35	14	17	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17101--17198	32	3.0	32	95	1	169	35	12	16	35	1.86
17099--17196	19	5.8	18	70	28	81	34	12	16	36	1.86
17237--17261	13	1.9	13	100	0	50	32	16	16	36	1.90
17270--17398	52	2.5	52	93	0	222	35	17	17	29	1.93
21478--21533	19	2.9	19	89	2	85	33	14	19	32	1.92
28481--28512	15	2.1	15	94	0	55	28	28	0	43	1.55
30096--30162	33	2.0	33	82	5	82	34	11	11	41	1.79
30194--30248	19	2.8	19	83	2	65	38	12	16	32	1.86
37118--37158	21	2.0	20	90	4	64	51	17	12	19	1.76
38059--38112	20	2.7	20	85	0	81	35	14	16	33	1.90
38170--38195	13	2.0	13	100	0	52	30	15	15	38	1.88
39681--39747	33	2.0	33	86	11	93	32	16	13	37	1.88
39776--39831	19	2.8	21	83	10	80	33	17	14	33	1.90
39817--39843	13	2.1	13	100	0	54	40	14	14	29	1.86
40384--40428	19	2.5	19	85	7	67	35	35	2	26	1.69
40394--40446	19	2.6	19	82	8	61	22	39	3	33	1.72
40444--40469	12	2.2	12	100	0	52	53	0	7	38	1.30
42296--42323	13	2.2	13	100	0	56	39	17	14	28	1.89
48162--48201	18	2.2	19	86	4	55	42	10	17	30	1.82
48460--48492	13	2.5	13	95	0	57	33	15	15	36	1.88
48440--48506	33	2.0	33	91	5	109	32	16	13	37	1.88
48970--49001	12	2.7	12	95	0	55	15	3	15	65	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49490--49604	51	2.3	51	89	1	187	27	14	11	46	1.79
54823--54855	2	16.5	2	100	0	66	48	0	0	51	1.00

Tables:   1

The End!