genome.fa.s1919.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1919
Parameters: 2 7 7 80 10 50 1000
Length:  196150

Tables:   1   

This is table  1  of  1  ( 116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6547--6585	18	2.1	19	85	4	53	71	7	7	12	1.29
10820--10894	20	3.8	20	78	7	89	40	13	13	33	1.83
10817--10894	40	2.0	39	87	2	111	39	14	12	33	1.84
12888--12939	16	3.2	16	75	5	50	61	9	3	25	1.44
13173--13206	14	2.2	16	90	10	54	44	2	2	50	1.32
14509--14573	26	2.6	25	87	4	94	40	1	0	58	1.07
14530--14576	20	2.4	19	80	16	51	42	0	0	57	0.98
15319--15470	71	2.1	71	100	0	304	33	13	26	26	1.93
16650--16713	33	1.9	33	100	0	128	46	3	3	46	1.34
16650--16742	33	3.2	28	82	13	93	45	3	5	46	1.42
16656--16722	20	3.7	20	72	25	76	44	2	4	47	1.38
17735--17776	12	3.6	12	87	3	59	42	0	0	57	0.99
18213--18252	13	3.1	13	89	10	64	7	37	7	47	1.60
20678--20723	21	2.1	22	84	4	58	30	19	30	19	1.97
22611--22683	27	2.7	27	89	0	110	24	5	24	45	1.74
22609--22700	27	3.6	25	77	11	96	25	6	22	45	1.76
25299--25365	27	2.5	27	90	0	107	46	14	28	10	1.78
31861--31891	7	4.4	7	91	0	53	35	0	3	61	1.12
32231--32276	24	1.9	24	86	0	65	45	26	4	23	1.71
36808--36853	24	1.9	24	86	0	65	45	26	4	23	1.71
37924--37982	30	2.0	30	86	0	82	40	3	8	47	1.51
38145--38237	31	3.1	31	76	17	106	32	3	0	64	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38151--38262	58	1.9	59	85	1	154	35	6	0	58	1.24
38709--38747	14	2.8	13	85	14	51	43	0	2	53	1.14
39426--39495	33	2.1	33	92	5	115	31	0	1	67	1.00
40230--40273	2	22.0	2	90	0	70	50	4	0	45	1.22
45482--45515	13	2.6	13	95	0	59	29	5	47	17	1.71
45600--45671	27	2.7	27	82	2	83	47	20	9	22	1.79
45817--45856	20	2.0	20	100	0	80	25	25	30	20	1.99
50184--50255	27	2.7	27	84	4	92	47	22	8	22	1.77
53876--54335	150	3.0	152	83	6	556	42	10	31	15	1.81
55927--55999	27	2.7	27	84	0	101	26	6	21	45	1.77
58850--58917	27	2.5	27	87	0	100	45	17	10	26	1.80
58905--58962	26	2.3	25	91	5	91	25	15	25	32	1.95
60826--60871	21	2.1	22	84	4	58	19	30	19	30	1.97
62875--63295	207	2.0	207	99	0	824	31	24	17	27	1.97
63653--63720	27	2.5	27	87	0	100	45	20	10	23	1.81
63708--63765	26	2.3	25	88	5	82	27	15	24	32	1.95
67006--67097	48	1.9	47	95	2	166	30	2	5	61	1.30
67979--68018	2	20.0	2	94	0	71	47	0	2	50	1.14
68672--68728	2	28.5	2	100	0	114	50	0	0	49	1.00
69413--69449	2	18.5	2	100	0	74	48	0	0	51	1.00
77448--77529	24	3.5	22	72	21	67	51	2	2	43	1.28
77477--77538	27	2.3	27	94	0	106	59	0	1	38	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81068--81191	66	1.9	66	88	4	191	41	11	19	28	1.86
82703--82762	29	2.1	29	84	6	77	55	8	8	28	1.59
87015--87045	8	4.0	8	91	8	55	0	9	0	90	0.46
87016--87045	15	2.0	15	93	0	51	0	10	0	90	0.47
89784--89824	17	2.4	17	84	8	57	43	0	2	53	1.13
90187--90227	22	1.9	22	85	14	59	43	0	0	56	0.99
90443--90521	28	2.9	28	85	7	101	21	6	22	49	1.72
90479--90547	24	2.8	24	82	4	75	21	5	26	46	1.74
95015--95097	28	3.0	28	100	0	166	18	10	21	49	1.77
95015--95121	56	1.9	55	87	7	155	20	8	22	48	1.76
95079--95147	24	2.8	24	82	4	75	21	5	26	46	1.74
95965--96002	17	2.2	18	90	4	60	65	0	2	31	1.06
97044--97068	7	3.6	7	100	0	50	76	0	0	24	0.80
98895--98963	27	2.5	29	79	11	81	46	18	7	27	1.75
103430--103475	24	1.9	25	91	8	78	45	26	8	19	1.79
103921--103968	19	2.5	19	79	0	51	56	4	14	25	1.56
107550--107583	6	5.7	6	86	13	52	61	0	0	38	0.96
107550--107583	17	1.9	18	94	5	61	61	0	0	38	0.96
107507--107599	43	2.2	42	79	12	100	56	3	1	38	1.22
111197--111248	13	4.0	12	74	16	50	38	9	7	44	1.66
111286--111388	37	2.8	36	92	5	170	12	34	10	41	1.78
116105--116206	36	2.8	37	92	3	179	12	36	10	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118464--118507	21	2.1	19	84	16	52	27	27	2	43	1.67
118540--118586	15	3.1	14	80	14	58	21	0	0	78	0.75
124230--124300	32	2.2	32	97	0	133	22	35	26	15	1.94
124721--124767	18	2.5	18	82	6	58	74	0	19	6	1.03
125014--125067	22	2.5	22	78	6	56	75	3	16	3	1.08
125073--125099	10	2.7	10	100	0	54	18	0	0	81	0.69
125717--125748	2	17.0	2	87	12	50	50	0	0	50	1.00
125711--125748	12	3.1	13	88	7	53	47	0	2	50	1.15
131215--131261	17	2.8	17	77	9	51	55	0	6	38	1.26
131840--131894	24	2.3	23	84	12	74	49	0	1	49	1.11
132015--132055	19	2.2	19	86	8	57	51	2	2	43	1.28
133973--134028	28	2.0	28	100	0	112	53	7	3	35	1.46
134337--134381	18	2.5	18	88	0	63	44	2	2	51	1.26
134628--134665	18	2.1	18	90	9	60	68	0	13	18	1.21
137188--137224	2	18.5	2	100	0	74	48	0	0	51	1.00
139257--139324	33	2.0	36	88	8	106	36	1	8	52	1.42
139266--139335	33	2.2	30	80	12	70	40	1	7	51	1.38
144651--144945	50	5.9	50	88	0	419	30	20	17	30	1.96
148326--148380	24	2.2	25	90	9	87	47	1	0	50	1.11
148383--148427	23	2.0	23	82	8	56	37	0	0	62	0.96
148438--148501	22	2.7	24	80	11	78	37	0	0	62	0.95
148446--148498	21	2.5	22	87	3	72	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148554--148615	15	4.1	16	76	15	60	66	0	0	33	0.92
148579--148622	11	4.2	11	85	11	56	68	0	0	31	0.90
148580--148621	10	4.1	10	87	3	57	71	0	0	28	0.86
148585--148618	14	2.3	15	90	5	52	73	0	0	26	0.83
151159--151202	18	2.4	18	88	0	61	45	6	2	45	1.42
155592--155625	12	2.8	12	86	4	50	58	2	8	29	1.43
156634--156669	17	2.1	18	94	5	65	50	0	0	50	1.00
157811--157847	3	12.3	3	94	0	65	35	2	0	62	1.10
158023--158063	2	21.0	2	95	5	75	51	0	0	48	1.00
163293--163334	20	2.1	20	86	0	57	59	0	4	35	1.19
163613--163641	14	2.1	14	100	0	58	79	13	6	0	0.93
164145--164212	21	3.2	20	76	17	59	54	0	0	45	0.99
164154--164213	21	2.8	21	80	12	68	58	0	0	41	0.98
167451--167476	2	13.0	2	100	0	52	50	0	0	50	1.00
168764--168820	29	1.9	30	92	3	98	45	5	0	49	1.24
171271--171317	25	1.9	24	91	4	76	57	0	2	40	1.11
171341--171396	24	2.3	25	85	11	73	62	1	0	35	1.06
171670--171705	2	18.0	2	100	0	72	50	0	0	50	1.00
177122--177163	20	2.0	21	86	4	59	64	11	0	23	1.27
177838--177868	2	15.5	2	100	0	62	51	0	0	48	1.00
178264--178293	6	5.0	6	91	0	51	50	3	0	46	1.18
179827--179971	58	2.5	58	88	5	204	21	11	31	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181472--181512	2	20.5	2	100	0	82	48	0	0	51	1.00
183835--183875	21	2.0	21	85	9	57	65	0	4	29	1.13
184174--184201	2	14.0	2	100	0	56	50	0	0	50	1.00
184537--184567	15	2.1	15	93	0	53	54	0	0	45	0.99
186643--186687	23	2.0	23	90	0	72	46	4	22	26	1.70
190304--190464	79	2.0	79	100	0	322	37	22	13	26	1.92

Tables:   1

The End!