Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold192
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2196177
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 12544 characters in sequence are not A, C, G, or T
File 1 of 14
Found at i:2866 original size:30 final size:31
Alignment explanation
Indices: 2826--2933 Score: 92
Period size: 30 Copynumber: 3.8 Consensus size: 31
2816 GTACTGTGAC
*
2826 CTTTTCAAAGTCCACGACTCAGTGGCATTTT
1 CTTTTCAAAGTCCACAACTCAGTGGCATTTT
* *
2857 CTTTT-AAAGTCCACAACTCTGTGGCA--TC
1 CTTTTCAAAGTCCACAACTCAGTGGCATTTT
**
2885 CTTTT--AAGTCCACAACT--GTGGCA--CC
1 CTTTTCAAAGTCCACAACTCAGTGGCATTTT
*
2910 CTTTT-AAAGTCCACAACTCCGTGG
1 CTTTTCAAAGTCCACAACTCAGTGG
2934 TACCCTTTTA
Statistics
Matches: 70, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
25 12 0.17
26 12 0.17
27 12 0.17
28 10 0.14
30 19 0.27
31 5 0.07
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (31 bp):
CTTTTCAAAGTCCACAACTCAGTGGCATTTT
Found at i:2900 original size:27 final size:27
Alignment explanation
Indices: 2857--3696 Score: 1230
Period size: 27 Copynumber: 30.9 Consensus size: 27
2847 GTGGCATTTT
* *
2857 CTTTTAAAGTCCACAACTCTGTGGCATC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
2885 CTTTTAAGTCCACAACT--GTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
2910 CTTTTAAAGTCCACAACTCCGTGGTACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
2938 CTTTTAAGTCCAC-ACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
2964 CTTTTAAAATCCACAACTCCGTGGTACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
2992 CTTTT-AGTCCACAACTCTGTGGCAACC
1 CTTTTAAGTCCACAACTCCGTGGC-ACC
*
3019 CTTTTAAGTCCACAACTCTGT-GCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3045 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3072 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
** *
3099 CTTTTAAGTCCACAACTCTATGGCATTC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
3127 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3154 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
3181 CTTTTAAGTCCACAACTCTGTGGCATTC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
3209 CTTTTAA-TACCACAACTCCGTGGCACC
1 CTTTTAAGT-CCACAACTCCGTGGCACC
3236 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3263 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
3290 CTTTTAAGTCCACAACTCTGTGGCATTC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
3318 CTTTTAA-TACCACAACTCCGTGGCACC
1 CTTTTAAGT-CCACAACTCCGTGGCACC
3345 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3372 CTTTTAAGTCCACAACTCCGTGGCACT
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
3399 C-TTTAAGTCCATAACTCCATGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
3426 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
3453 CTTTTAAGACCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3480 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* * *
3507 CTTTTAAGTCCATAACTCTGTGGCATCT
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
* *
3535 TTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3562 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
3590 CTTTT-AGTCCACAACTCTGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
3617 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
3644 CTTTTAAGTCCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
* * * *
3672 CTTTTAAATTCACAAATCGGTGGCA
1 CTTTTAAGTCCACAACTCCGTGGCA
3697 ACCCATTCCA
Statistics
Matches: 743, Mismatches: 47, Indels: 44
0.89 0.06 0.05
Matches are distributed among these distances:
25 12 0.02
26 105 0.14
27 394 0.53
28 232 0.31
ACGTcount: A:0.23, C:0.34, G:0.14, T:0.29
Consensus pattern (27 bp):
CTTTTAAGTCCACAACTCCGTGGCACC
Found at i:3156 original size:82 final size:81
Alignment explanation
Indices: 2857--3696 Score: 1266
Period size: 82 Copynumber: 10.3 Consensus size: 81
2847 GTGGCATTTT
*
2857 CTTTTAAAGTCCACAACTCTGTGGCATCCTTTTAAGTCCACAACT--GTGGCACCCTTTTAAAGT
1 CTTTT-AAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGT
*
2920 CCACAACTCCGTGGTACC
64 CCACAACTCCGTGGCACC
* *
2938 CTTTTAAGTCCAC-ACTCTGTGGCACCCTTTTAAAATCCACAACTCCGTGGTACCCTTTT-AGTC
1 CTTTTAAGTCCACAACTCTGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTC
*
3001 CACAACTCTGTGGCAACC
65 CACAACTCCGTGGC-ACC
3019 CTTTTAAGTCCACAACTCTGT-GCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
3083 ACAACTCCGTGGCACC
66 ACAACTCCGTGGCACC
* *
3099 CTTTTAAGTCCACAACTCTATGGCATTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
1 CTTTTAAGTCCACAACTCTGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
3164 CACAACTCCGTGGCACC
65 CACAACTCCGTGGCACC
*
3181 CTTTTAAGTCCACAACTCTGTGGCATTCCTTTTAA-TACCACAACTCCGTGGCACCCTTTTAAGT
1 CTTTTAAGTCCACAACTCTGTGGCA-CCCTTTTAAGT-CCACAACTCCGTGGCACCCTTTTAAGT
3245 CCACAACTCCGTGGCACC
64 CCACAACTCCGTGGCACC
* * *
3263 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATTCCTTTTAA-TA
1 CTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGT-
3327 CCACAACTCCGTGGCACC
64 CCACAACTCCGTGGCACC
* *
3345 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACTC-TTTAAGTCC
1 CTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
* *
3409 ATAACTCCATGGCATCC
66 ACAACTCCGTGGCA-CC
* *
3426 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGACCACAACTCCGTGGCACCCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
3491 ACAACTCCGTGGCACC
66 ACAACTCCGTGGCACC
* ** *
3507 CTTTTAAGTCCATAACTCTGTGGCATCTTTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAGT
1 CTTTTAAGTCCACAACTCTGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGT
3572 CCACAACTCCGTGGCACC
64 CCACAACTCCGTGGCACC
3590 CTTTT-AGTCCACAACTCTGTGGCATCCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
1 CTTTTAAGTCCACAACTCTGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
3654 CACAACTCCGTGGCATCC
65 CACAACTCCGTGGCA-CC
* * * *
3672 CTTTTAAATTCACAAATCGGTGGCA
1 CTTTTAAGTCCACAACTCTGTGGCA
3697 ACCCATTCCA
Statistics
Matches: 702, Mismatches: 38, Indels: 36
0.90 0.05 0.05
Matches are distributed among these distances:
79 17 0.02
80 102 0.15
81 178 0.25
82 363 0.52
83 42 0.06
ACGTcount: A:0.23, C:0.34, G:0.14, T:0.29
Consensus pattern (81 bp):
CTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
ACAACTCCGTGGCACC
Found at i:3724 original size:32 final size:32
Alignment explanation
Indices: 3682--4154 Score: 790
Period size: 32 Copynumber: 14.8 Consensus size: 32
3672 CTTTTAAATT
* *
3682 CACAAATCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
3714 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
3746 CACAAGTCGGTGGCAA-CCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
3777 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
3809 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
3841 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
3873 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
3905 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
3937 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
3969 CACAAGTCGGTGGCAACCCA-TTCTAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTC-AAAGCCCA
*
4001 CACAAGTAGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
** *
4033 CACAAGTCGGTGGCAACCTTTTTCAAAGCCCC
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
4065 CACAAGTTGGTGGCAACCCATTT-AAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
4096 CGCAAGTCGGTGGCAACCCATTTAAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* * *
4128 CGCAAGTCAGTGGCAACCCTTTTCAAA
1 CACAAGTCGGTGGCAACCCATTTCAAA
4155 TCACCATTTT
Statistics
Matches: 421, Mismatches: 16, Indels: 8
0.95 0.04 0.02
Matches are distributed among these distances:
31 62 0.15
32 356 0.85
33 3 0.01
ACGTcount: A:0.31, C:0.34, G:0.19, T:0.16
Consensus pattern (32 bp):
CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
Found at i:5429 original size:17 final size:17
Alignment explanation
Indices: 5409--5444 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
5399 AAGGAAGATG
* *
5409 AAGAAGAAAGAAAGAAA
1 AAGAAAAAAAAAAGAAA
5426 AAGAAAAAAAAAAGAAA
1 AAGAAAAAAAAAAGAAA
5443 AA
1 AA
5445 ATATGAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (17 bp):
AAGAAAAAAAAAAGAAA
Found at i:11885 original size:30 final size:32
Alignment explanation
Indices: 11851--11929 Score: 78
Period size: 36 Copynumber: 2.5 Consensus size: 32
11841 AAGTTCCCTT
11851 CAAAATGACAAAAAAAA-AAAAAGT-CAAAAG
1 CAAAATGACAAAAAAAAGAAAAAGTGCAAAAG
11881 CAAAA-GCACAAAAAATGAAAAGAAAAAGTGCAAAAG
1 CAAAATG-AC--AAAA--AAAAGAAAAAGTGCAAAAG
11917 CAAAAT-A-AAAAAA
1 CAAAATGACAAAAAA
11930 GGGAACAACA
Statistics
Matches: 41, Mismatches: 0, Indels: 16
0.72 0.00 0.28
Matches are distributed among these distances:
29 1 0.02
30 9 0.22
32 8 0.20
34 4 0.10
35 8 0.20
36 11 0.27
ACGTcount: A:0.72, C:0.10, G:0.11, T:0.06
Consensus pattern (32 bp):
CAAAATGACAAAAAAAAGAAAAAGTGCAAAAG
Found at i:11943 original size:36 final size:35
Alignment explanation
Indices: 11863--11943 Score: 85
Period size: 36 Copynumber: 2.3 Consensus size: 35
11853 AAATGACAAA
* *
11863 AAAAAAAAAAGTCAAAAGCAAAAGCACAAAAAATG
1 AAAACAAAAAGTCAAAAGCAAAAGCACAAAAAAGG
* *
11898 AAAAGAAAAAGTGCAAAAGCAAAA-TA-AAAAAAGGG
1 AAAACAAAAAGT-CAAAAGCAAAAGCACAAAAAA-GG
11933 AACAACAAAAA
1 AA-AACAAAAA
11944 CAAAAAACGA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
34 6 0.15
35 15 0.38
36 18 0.46
ACGTcount: A:0.72, C:0.10, G:0.14, T:0.05
Consensus pattern (35 bp):
AAAACAAAAAGTCAAAAGCAAAAGCACAAAAAAGG
Found at i:12212 original size:15 final size:15
Alignment explanation
Indices: 12192--12220 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
12182 ACCTAATCCT
12192 AAAAAAAAAAAACCA
1 AAAAAAAAAAAACCA
12207 AAAAAAAAAAAACC
1 AAAAAAAAAAAACC
12221 TTTTCACCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAACCA
Found at i:13281 original size:30 final size:31
Alignment explanation
Indices: 13241--13348 Score: 92
Period size: 30 Copynumber: 3.8 Consensus size: 31
13231 GTACTGTGAC
*
13241 CTTTTCAAAGTCCACGACTCAGTGGCATTTT
1 CTTTTCAAAGTCCACAACTCAGTGGCATTTT
* *
13272 CTTTT-AAAGTCCACAACTCTGTGGCA--TC
1 CTTTTCAAAGTCCACAACTCAGTGGCATTTT
**
13300 CTTTT--AAGTCCACAACT--GTGGCA--CC
1 CTTTTCAAAGTCCACAACTCAGTGGCATTTT
*
13325 CTTTT-AAAGTCCACAACTCCGTGG
1 CTTTTCAAAGTCCACAACTCAGTGG
13349 TACCCTTTTA
Statistics
Matches: 70, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
25 12 0.17
26 12 0.17
27 12 0.17
28 10 0.14
30 19 0.27
31 5 0.07
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (31 bp):
CTTTTCAAAGTCCACAACTCAGTGGCATTTT
Found at i:13315 original size:27 final size:27
Alignment explanation
Indices: 13272--14143 Score: 1251
Period size: 27 Copynumber: 32.0 Consensus size: 27
13262 GTGGCATTTT
* *
13272 CTTTTAAAGTCCACAACTCTGTGGCATC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
13300 CTTTTAAGTCCACAACT--GTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
13325 CTTTTAAAGTCCACAACTCCGTGGTACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
13353 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
13380 CTTTTAAAATCCACAACTCCGTGGTACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* *
13408 CTTTTTAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
13435 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
13462 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
13489 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
** *
13516 CTTTTAAGTCCACAACTCTATGGCATTC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
13544 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
13571 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
13598 CTTTTAAGTCCACAACTCTGTGGCATTC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
13626 CTTTTAA-TCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
13652 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
13679 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
13706 CTTTTAAGTCCACAACTCTGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
13734 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
13761 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
13788 CTTTTAAGTCCACAACTCCGTGGCA-C
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
13814 CTTTTAAGTCCATAACT-C-TGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
13839 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
13866 CTTTTAAGTCCACAACTCCGTGGCA-C
1 CTTTTAAGTCCACAACTCCGTGGCACC
13892 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
13919 CTTTTAAGTCCACAACTCCGTGGCATC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
13946 TTTTTAAGTCCACAACT-CGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
13972 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
13999 CTTTTTAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
14026 CTTTTAAGTCCAAAACACACTCGGTGGCACC
1 CTTTTAAGTCC---ACA-ACTCCGTGGCACC
** * *
14057 CATTCAAAG-CCAC-ACAACGGTGGCAACC
1 C-TTTTAAGTCCACAAC-TCCGTGGC-ACC
** * *
14085 CATTTTAACCCCACAAATCGGTGGCACC
1 C-TTTTAAGTCCACAACTCCGTGGCACC
* *
14113 CTTTCAAAGTCCACAACAGTCGGTGGCACC
1 CTTT-TAAGTCCACAAC--TCCGTGGCACC
14143 C
1 C
14144 ATTCAAAGCC
Statistics
Matches: 772, Mismatches: 47, Indels: 48
0.89 0.05 0.06
Matches are distributed among these distances:
24 5 0.01
25 30 0.04
26 90 0.12
27 478 0.62
28 122 0.16
29 11 0.01
30 16 0.02
31 15 0.02
32 5 0.01
ACGTcount: A:0.24, C:0.34, G:0.15, T:0.27
Consensus pattern (27 bp):
CTTTTAAGTCCACAACTCCGTGGCACC
Found at i:13558 original size:163 final size:162
Alignment explanation
Indices: 13272--14037 Score: 1269
Period size: 163 Copynumber: 4.7 Consensus size: 162
13262 GTGGCATTTT
*
13272 CTTTTAAAGTCCACAACTCTGTGGCATCCTTTTAAGTCCACAACT--GTGGCACCCTTTTAAAGT
1 CTTTT-AAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGT
* *
13335 CCACAACTCCGTGGTACCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAATCCACAACTCC
64 CCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTTTT-AAGTCCACAACTCC
* * *
13400 GTGGTACCCTTTTTAGTCCACAACTCTGTGGCACC
128 GTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
*
13435 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
* *
13500 ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTATGGCATTCCTTTTAAGTCCACAACTCCGT
66 ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCA-CCCTTTTAAGTCCACAACTCCGT
13565 GGCACCCTTTTAAGTCCACAACTCCGTGGCACC
130 GGCACCCTTTTAAGTCCACAACTCCGTGGCACC
*
13598 CTTTTAAGTCCACAACTCTGTGGCATTCCTTTTAA-TCCACAACTCCGTGGCACCCTTTTAAGTC
1 CTTTTAAGTCCACAACTCCGTGGCA-TCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
* *
13662 CACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGT
65 CACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGT
13727 GGCATCCCTTTTAAGTCCACAACTCCGTGGCACC
130 GGCA-CCCTTTTAAGTCCACAACTCCGTGGCACC
*
13761 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
* *
13825 ATAACT-C-TGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTG
66 ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTG
13888 GCA-CCTTTTAAGTCCACAACTCCGTGGCACC
131 GCACCCTTTTAAGTCCACAACTCCGTGGCACC
*
13919 CTTTTAAGTCCACAACTCCGTGGCATCTTTTTAAGTCCACAACT-CGTGGCACCCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
*
13983 ACAACTCCGTGGCACCCTTTTTAGTCCACAACTCTGTGGCACCCTTTTAAGTCCA
66 ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCA
14038 AAACACACTC
Statistics
Matches: 570, Mismatches: 24, Indels: 21
0.93 0.04 0.03
Matches are distributed among these distances:
157 7 0.01
158 87 0.15
159 1 0.00
160 102 0.18
161 1 0.00
162 87 0.15
163 258 0.45
164 27 0.05
ACGTcount: A:0.23, C:0.34, G:0.14, T:0.29
Consensus pattern (162 bp):
CTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTG
GCACCCTTTTAAGTCCACAACTCCGTGGCACC
Found at i:14183 original size:32 final size:32
Alignment explanation
Indices: 14046--14617 Score: 784
Period size: 32 Copynumber: 18.7 Consensus size: 32
14036 CAAAACACAC
14046 TCGGTGGC-ACCCA-TTCAAAG-CCACACAA-
1 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
* *
14074 -CGGTGGCAACCCATTT-TAA-CCC-CACAAA
1 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
*
14102 TCGGTGGC-ACCC-TTTCAAAGTCCACA-ACAG
1 TCGGTGGCAACCCATTTCAAAGCCCACACA-AG
14132 TCGGTGGC-ACCCA-TTCAAAGCCCACACAAG
1 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
*
14162 TCGGTGGCAACCCATTCCAAAGCCCACACAAG
1 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
*
14194 TCGGTGGCAACCCATTCCAAAGCCCACACAAG
1 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
*
14226 TCGGTGGCAACCCATTCCAAAGCCCACACAAG
1 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
14258 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
1 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
14290 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
1 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
14322 TCGGTGG-AACCCATTTCAAAGCCCACACAAG
1 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
14353 -C-GT-----CCC-TTTCAAAG-CCACAC-AG
1 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
14375 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
1 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
14407 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
1 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
14439 TCGGTGGCAACCCA-TTCTAAAGCCCACACAAG
1 TCGGTGGCAACCCATTTC-AAAGCCCACACAAG
*
14471 T-AGTGGCAACCCA-TTCAAAGCCCACACAAG
1 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
** *
14501 TCGGTGGCAACCTTTTTCAAAGCCCCCACAAG
1 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
* * *
14533 TTGGTGGCAACCCATTTAAAAGCCCACGCAAG
1 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
* *
14565 TCGGTGGCAACCCATTTAAAAGCCCACGCAAG
1 TCGGTGGCAACCCATTTCAAAGCCCACACAAG
* *
14597 TCAGTGGCAACCCTTTTCAAA
1 TCGGTGGCAACCCATTTCAAA
14618 TCACCATTTT
Statistics
Matches: 496, Mismatches: 22, Indels: 48
0.88 0.04 0.08
Matches are distributed among these distances:
22 2 0.00
23 7 0.01
24 10 0.02
25 3 0.01
27 15 0.03
28 15 0.03
29 17 0.03
30 61 0.12
31 62 0.12
32 304 0.61
ACGTcount: A:0.31, C:0.34, G:0.19, T:0.16
Consensus pattern (32 bp):
TCGGTGGCAACCCATTTCAAAGCCCACACAAG
Found at i:15885 original size:17 final size:17
Alignment explanation
Indices: 15865--15900 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15855 AAGGAAGATG
* *
15865 AAGAAGAAAGAAAGAAA
1 AAGAAAAAAAAAAGAAA
15882 AAGAAAAAAAAAAGAAA
1 AAGAAAAAAAAAAGAAA
15899 AA
1 AA
15901 ATATGAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (17 bp):
AAGAAAAAAAAAAGAAA
Found at i:27045 original size:13 final size:13
Alignment explanation
Indices: 27027--27079 Score: 63
Period size: 13 Copynumber: 4.2 Consensus size: 13
27017 CTTTACACCC
27027 AAAAAAACAAAAA
1 AAAAAAACAAAAA
*
27040 AAAAAAACAAAAC
1 AAAAAAACAAAAA
***
27053 AAAAAAA-TTTAA
1 AAAAAAACAAAAA
27065 AAAAAAACAAAAA
1 AAAAAAACAAAAA
27078 AA
1 AA
27080 CCAAGAAAAA
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
12 8 0.26
13 23 0.74
ACGTcount: A:0.87, C:0.08, G:0.00, T:0.06
Consensus pattern (13 bp):
AAAAAAACAAAAA
Found at i:27058 original size:20 final size:20
Alignment explanation
Indices: 27027--27079 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
27017 CTTTACACCC
27027 AAAAAAAC-AAAAAA-AAAA
1 AAAAAAACAAAAAAATAAAA
* **
27045 AACAAAACAAAAAAATTTAA
1 AAAAAAACAAAAAAATAAAA
27065 AAAAAAACAAAAAAA
1 AAAAAAACAAAAAAA
27080 CCAAGAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 7 0.24
19 6 0.21
20 16 0.55
ACGTcount: A:0.87, C:0.08, G:0.00, T:0.06
Consensus pattern (20 bp):
AAAAAAACAAAAAAATAAAA
Found at i:28361 original size:29 final size:29
Alignment explanation
Indices: 28321--29274 Score: 1200
Period size: 29 Copynumber: 32.9 Consensus size: 29
28311 TGTTCATCCC
*
28321 TTTCAAAGCCCACAAGTCAATGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
28350 TTTCAAAGCCCACGA-CCTAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTC-AGTGGCACTCT
28378 TTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
28407 TTTCAAAGCCCACAAATCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
28436 TTTCAAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
28464 TTTCAAAGCTCATAAGTCAGTGGCACTCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
28493 TTTCAAAGCCCACAAGTCAGTGACACTCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
28522 TTTCAAAGCCCACAAGTCAGTGGCACTTT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
28551 TTTCAAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
28579 TTTCAAAGCCCACAAGTTAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
28608 TTTCAAAGCCCACAAATTAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
28637 TCTCAAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
28665 TTTCAAAGCCCACAATTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
28694 TTTCAAAGCCCACAAGTCAGTGGTACAC-
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
28722 TTTCAAAGCCCACAAGTTAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
28751 TTTCAAAGCTCACACGAGTCGGTGGCAACTCT
1 TTTCAAAGC-C-CACAAGTCAGTGGC-ACTCT
28783 TTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
28812 TTTCAAAGCCCACAAGTCAGTAGTAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
28840 TTTCAAAGCCCACAAGTCAGTGGCA-TCA
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
28868 TTTCAAAGCCCATAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
28896 TTTCAAAACCCATGCAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCA--CAAGTCAGTGGCACTCT
* * *
28926 TTTCAAAGCCCACAAATGAATGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
28955 TTTCAAAGCCCACAAGTCAGTGGCACTAT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
28984 TTTCAAAGCCCACAAGTCAGTGGCACTAT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
29013 TTTCAAAGCCCACAAGTTAGTGGCA-TCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
29041 TTTCAAAGCCCATAAGTCAGTGGCACTC-
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
29069 TTTCAAAGCCCACGTAAATCAATGGCACCCT
1 TTTCAAAGCCCAC--AAGTCAGTGGCACTCT
*
29100 TTT-AAAGCCCACGTGAGTCAGTGGCAC-CT
1 TTTCAAAGCCCAC--AAGTCAGTGGCACTCT
* * *
29129 TTTCAAAGCCCACAAGTTAATGGCACTCA
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
29158 TTTCAAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
29186 TTTCAAAGCCCACAAGTCAGTGACACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
**
29215 TTTCAAAGCCCACACGAGTTGGTGGCAACTCT
1 TTTCAAAGCCCACA--AGTCAGTGGC-ACTCT
*
29247 TTTCAAAGCCCACATAAGTTAGTGGCAC
1 TTTCAAAGCCCAC--AAGTCAGTGGCAC
29275 CATTTTTAAA
Statistics
Matches: 813, Mismatches: 85, Indels: 52
0.86 0.09 0.05
Matches are distributed among these distances:
28 268 0.33
29 398 0.49
30 81 0.10
31 24 0.03
32 41 0.05
34 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (29 bp):
TTTCAAAGCCCACAAGTCAGTGGCACTCT
Found at i:28387 original size:57 final size:57
Alignment explanation
Indices: 28318--29274 Score: 1163
Period size: 57 Copynumber: 16.5 Consensus size: 57
28308 GAATGTTCAT
* * *
28318 CCCTTTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAAGCCCACGA-CCTAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTC-AGTGGCA
*
28375 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAATCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
28432 CTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCTCATAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
28489 CTCCTTTCAAAGCCCACAAGTCAGTGACACTCCTTTCAAAGCCCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA
** * *
28547 CTTTTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTTAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
28604 CTCTTTTCAAAGCCCACAAATTAGTGGCACTCTTCTCAAAGCCCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
28662 CCCTTTCAAAGCCCACAATTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGTA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
28719 CACTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCTCACACGAGTCGGTGGCAA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC-C-CACAAGTCAGTGGC-A
* * *
28779 CTCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTAGTA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
28837 CCCTTTCAAAGCCCACAAGTCAGTGGCA-TCATTTCAAAGCCCATAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * * *
28893 CCCTTTCAAAACCCATGCAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAATGAATGGCA
1 CCCTTTCAAAGCCCA--CAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
28951 CTCTTTTCAAAGCCCACAAGTCAGTGGCACTATTTTCAAAGCCCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA
** * * *
29009 CTATTTTCAAAGCCCACAAGTTAGTGGCA-TCCTTTCAAAGCCCATAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * * *
29066 CTCTTTCAAAGCCCACGTAAATCAATGGCACCCTTTT-AAAGCCCACGTGAGTCAGTGGCA
1 CCCTTTCAAAGCCCAC--AAGTCAGTGGCACTCTTTTCAAAGCCCAC--AAGTCAGTGGCA
* * * *
29126 CCTTTTCAAAGCCCACAAGTTAATGGCACTCATTTCAAAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA
* **
29183 CCCTTTCAAAGCCCACAAGTCAGTGACACTCTTTTCAAAGCCCACACGAGTTGGTGGCAA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACA--AGTCAGTGGC-A
* *
29243 CTCTTTTCAAAGCCCACATAAGTTAGTGGCAC
1 C-CCTTTCAAAGCCCAC--AAGTCAGTGGCAC
29275 CATTTTTAAA
Statistics
Matches: 786, Mismatches: 89, Indels: 44
0.86 0.10 0.05
Matches are distributed among these distances:
56 51 0.06
57 364 0.46
58 225 0.29
59 54 0.07
60 30 0.04
61 51 0.06
63 11 0.01
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (57 bp):
CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA
Found at i:28466 original size:86 final size:85
Alignment explanation
Indices: 28318--29275 Score: 1204
Period size: 86 Copynumber: 11.0 Consensus size: 85
28308 GAATGTTCAT
* * *
28318 CCCTTTCAAAGCCCACAAGTCAATGGCACTCTTTTCAAAGCCCACGA-CCTAGTGGCACCCTTTC
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTC-AGTGGCACCCTTTC
28382 AAAGCCCACAAGTCAGTGGCA
65 AAAGCCCACAAGTCAGTGGCA
* *
28403 CTCTTTTCAAAGCCCACAAATCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTC
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTC
* *
28468 AAAGCTCATAAGTCAGTGGCA
65 AAAGCCCACAAGTCAGTGGCA
* * **
28489 CTCCTTTCAAAGCCCACAAGTCAGTGACACTCCTTTCAAAGCCCACAAGTCAGTGGCACTTTTTT
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTT
28554 CAAAGCCCACAAGTCAGTGGCA
64 CAAAGCCCACAAGTCAGTGGCA
* * * *
28576 CCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAATTAGTGGCACTCTTCTC
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTT-TC
28641 AAAGCCCACAAGTCAGTGGCA
65 AAAGCCCACAAGTCAGTGGCA
* * *
28662 CCCTTTCAAAGCCCACAATTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGTACACTTTCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCA
*
28727 AAGCCCACAAGTTAGTGGCA
66 AAGCCCACAAGTCAGTGGCA
* * * *
28747 CTCTTTTCAAAGCTCACACGAGTCGGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCACTCT
1 C-CCTTTCAAAGC-C-CACAAGTCAGTGGC-ACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CC
* *
28812 TTTCAAAGCCCACAAGTCAGTAGTA
61 TTTCAAAGCCCACAAGTCAGTGGCA
* *
28837 CCCTTTCAAAGCCCACAAGTCAGTGGCA-TCATTTCAAAGCCCATAAGTCAGTGGCACCCTTTCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCA
*
28901 AAACCCATGCAAGTCAGTGGCA
66 AAGCCCA--CAAGTCAGTGGCA
* * * **
28923 CCCTTTCAAAGCCCACAAATGAATGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACTATTTTC
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTC
28988 AAAGCCCACAAGTCAGTGGCA
65 AAAGCCCACAAGTCAGTGGCA
** * * * *
29009 CTATTTTCAAAGCCCACAAGTTAGTGGCA-TCCTTTCAAAGCCCATAAGTCAGTGGCACTCTTTC
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTC
* *
29073 AAAGCCCACGTAAATCAATGGCA
65 AAAGCCCAC--AAGTCAGTGGCA
* * * * *
29096 CCCTTTTAAAGCCCACGTGAGTCAGTGGCAC-CTTTTCAAAGCCCACAAGTTAATGGCACTCATT
1 CCCTTTCAAAGCCCAC--AAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCTT
29160 TCAAAGCCCACAAGTCAGTGGCA
63 TCAAAGCCCACAAGTCAGTGGCA
* ** *
29183 CCCTTTCAAAGCCCACAAGTCAGTGACACTCTTTTCAAAGCCCACACGAGTTGGTGGCAACTCTT
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACA--AGTCAGTGGC-AC-CCT
*
29248 TTCAAAGCCCACATAAGTTAGTGGCA
62 TTCAAAGCCCAC--AAGTCAGTGGCA
29274 CC
1 CC
29276 ATTTTTAAAA
Statistics
Matches: 761, Mismatches: 86, Indels: 46
0.85 0.10 0.05
Matches are distributed among these distances:
84 12 0.02
85 78 0.10
86 377 0.50
87 123 0.16
88 65 0.09
89 70 0.09
90 23 0.03
91 13 0.02
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (85 bp):
CCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCA
AAGCCCACAAGTCAGTGGCA
Found at i:29861 original size:20 final size:20
Alignment explanation
Indices: 29833--29907 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 20
29823 TTTTACCCAG
29833 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
29853 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* *
29873 ATGTATCGATATATTCTTCA
1 ATGTATCGATACATTTTTCA
29893 ATGTATCGATACATT
1 ATGTATCGATACATT
29908 ATGTCTTTTT
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:29877 original size:40 final size:39
Alignment explanation
Indices: 29833--29910 Score: 120
Period size: 40 Copynumber: 2.0 Consensus size: 39
29823 TTTTACCCAG
*
29833 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTTCAATATATCGATACAT-TATGA
* *
29873 ATGTATCGATATATTCTTCAATGTATCGATACATTATG
1 ATGTATCGATACATTCTTCAATATATCGATACATTATG
29911 TCTTTTTACC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (39 bp):
ATGTATCGATACATTCTTCAATATATCGATACATTATGA
Found at i:33723 original size:13 final size:13
Alignment explanation
Indices: 33705--33730 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33695 CTATTTATAT
33705 TGTATCGATACAC
1 TGTATCGATACAC
33718 TGTATCGATACAC
1 TGTATCGATACAC
33731 ACAAATATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:33851 original size:22 final size:22
Alignment explanation
Indices: 33792--33851 Score: 97
Period size: 21 Copynumber: 2.8 Consensus size: 22
33782 CATGAATAGT
*
33792 GATACGTGAACAGTG-TGTATC
1 GATACATGAACAGTGATGTATC
33813 GATACATGAA-AGTGATGTATC
1 GATACATGAACAGTGATGTATC
33834 GATACATGAACAGTGATG
1 GATACATGAACAGTGATG
33852 AATAGTGATG
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
20 4 0.11
21 25 0.69
22 7 0.19
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.27
Consensus pattern (22 bp):
GATACATGAACAGTGATGTATC
Found at i:33858 original size:10 final size:10
Alignment explanation
Indices: 33839--33869 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
33829 GTATCGATAC
33839 ATGAACAGTG
1 ATGAACAGTG
*
33849 ATGAATAGTG
1 ATGAACAGTG
33859 ATGAACAGTG
1 ATGAACAGTG
33869 A
1 A
33870 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:33957 original size:53 final size:53
Alignment explanation
Indices: 33893--34029 Score: 247
Period size: 53 Copynumber: 2.6 Consensus size: 53
33883 CTACTTCCAA
33893 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* *
33946 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
33999 TGTATCGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
34030 TATGCAATTT
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 67 0.84
54 13 0.16
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:34135 original size:21 final size:21
Alignment explanation
Indices: 34109--34149 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
34099 GTCAACCTTG
34109 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
34130 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
34150 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:34912 original size:19 final size:19
Alignment explanation
Indices: 34884--34948 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 19
34874 TATTATTTAA
34884 AATA-TTATAAATTTATAT
1 AATATTTATAAATTTATAT
*
34902 AATATTTATAAATATT-TTT
1 AATATTTATAAAT-TTATAT
* * *
34921 TATATTTGTATATTTATAT
1 AATATTTATAAATTTATAT
*
34940 TATATTTAT
1 AATATTTAT
34949 TTTTATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
18 6 0.16
19 30 0.79
20 2 0.05
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
AATATTTATAAATTTATAT
Found at i:34955 original size:15 final size:15
Alignment explanation
Indices: 34904--34961 Score: 59
Period size: 15 Copynumber: 4.1 Consensus size: 15
34894 ATTTATATAA
*
34904 TATTTATA-AATATT
1 TATTTATATTATATT
* *
34918 T-TTTATATT-TGTA
1 TATTTATATTATATT
34931 TATTTATATTATATT
1 TATTTATATTATATT
*
34946 TATTTTTATTATATT
1 TATTTATATTATATT
34961 T
1 T
34962 TAATTAATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
13 9 0.26
14 9 0.26
15 17 0.49
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (15 bp):
TATTTATATTATATT
Found at i:34959 original size:20 final size:21
Alignment explanation
Indices: 34934--34974 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
34924 ATTTGTATAT
*
34934 TTATATTAT-ATTTATTTTTA
1 TTATATTATAATTAATTTTTA
*
34954 TTATATTTTAATTAATTTTTA
1 TTATATTATAATTAATTTTTA
34975 ATGTTATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (21 bp):
TTATATTATAATTAATTTTTA
Found at i:35819 original size:15 final size:15
Alignment explanation
Indices: 35784--35829 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
35774 AGAGAGAGAT
35784 ATGA-AAAGAAAAAA
1 ATGAGAAAGAAAAAA
**
35798 AAAAGAAA-AAGAAAA
1 ATGAGAAAGAA-AAAA
35813 ATGAGAAAGAAAAAA
1 ATGAGAAAGAAAAAA
35828 AT
1 AT
35830 TGTGTATTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
14 4 0.16
15 19 0.76
16 2 0.08
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (15 bp):
ATGAGAAAGAAAAAA
Found at i:35821 original size:13 final size:13
Alignment explanation
Indices: 35787--35827 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
35777 GAGAGATATG
35787 AAAAGA-AAA-AA
1 AAAAGAGAAAGAA
*
35798 AAAAGAAAAAGAA
1 AAAAGAGAAAGAA
*
35811 AAATGAGAAAGAA
1 AAAAGAGAAAGAA
35824 AAAA
1 AAAA
35828 ATTGTGTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 6 0.24
12 3 0.12
13 16 0.64
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (13 bp):
AAAAGAGAAAGAA
Found at i:36209 original size:25 final size:23
Alignment explanation
Indices: 36149--36193 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
36139 TCGTGTAACT
36149 GTATCGTGTTAATGTTATTTTTC
1 GTATCGTGTTAATGTTATTTTTC
36172 GTATCGTGTTAATGTTATTTTT
1 GTATCGTGTTAATGTTATTTTT
36194 TGTACTATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.18, C:0.07, G:0.18, T:0.58
Consensus pattern (23 bp):
GTATCGTGTTAATGTTATTTTTC
Found at i:36620 original size:25 final size:24
Alignment explanation
Indices: 36592--36646 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 24
36582 GTCATAGGAG
*
36592 AGAAAGAAAAAA-AAAGAAGAGGAAA
1 AGAAAGAAAAAAGAAA-AA-AAGAAA
36617 AGAAAAGAAAAAAGAAAAAAAGAAA
1 AG-AAAGAAAAAAGAAAAAAAGAAA
36642 AGAAA
1 AGAAA
36647 ATTTTTTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 3 0.11
25 9 0.33
26 12 0.44
27 3 0.11
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (24 bp):
AGAAAGAAAAAAGAAAAAAAGAAA
Found at i:36621 original size:5 final size:5
Alignment explanation
Indices: 36594--36647 Score: 56
Period size: 5 Copynumber: 10.6 Consensus size: 5
36584 CATAGGAGAG
* * *
36594 AAAGA AAAAA AAAGA AGAGGA AAAGA AAAGA AAA-A AGAAAA AAAGA AAAGA
1 AAAGA AAAGA AAAGA A-AAGA AAAGA AAAGA AAAGA A-AAGA AAAGA AAAGA
36645 AAA
1 AAA
36648 TTTTTTATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
4 2 0.05
5 33 0.80
6 6 0.15
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:36622 original size:20 final size:20
Alignment explanation
Indices: 36594--36647 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
36584 CATAGGAGAG
* **
36594 AAAGAAAAAAAAAGAAGAGGA
1 AAAGAAAAGAAAA-AAGAAAA
36615 AAAGAAAAGAAAAAAGAAAA
1 AAAGAAAAGAAAAAAGAAAA
36635 AAAGAAAAGAAAA
1 AAAGAAAAGAAAA
36648 TTTTTTATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 18 0.60
21 12 0.40
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (20 bp):
AAAGAAAAGAAAAAAGAAAA
Found at i:36624 original size:13 final size:12
Alignment explanation
Indices: 36589--36647 Score: 52
Period size: 11 Copynumber: 5.0 Consensus size: 12
36579 GTTGTCATAG
36589 GAGAGAAAGAAAA
1 GAGA-AAAGAAAA
*
36602 -A-AAAAGAAGA
1 GAGAAAAGAAAA
36612 G-GAAAAGAAAA
1 GAGAAAAGAAAA
*
36623 GAAAAAAGAAAAA
1 GAGAAAAG-AAAA
*
36636 AAGAAAAGAAAA
1 GAGAAAAGAAAA
36648 TTTTTTATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
10 7 0.19
11 10 0.27
12 10 0.27
13 10 0.27
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (12 bp):
GAGAAAAGAAAA
Found at i:36759 original size:21 final size:22
Alignment explanation
Indices: 36722--36768 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
36712 CATATTAATA
* *
36722 ATTTATTTTATTTTATATAT-T
1 ATTTATTTTATTATATACATGT
36743 ATTTA-TTTATATATATACATGT
1 ATTTATTTTAT-TATATACATGT
36765 ATTT
1 ATTT
36769 GTATCATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 12 0.55
22 5 0.23
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (22 bp):
ATTTATTTTATTATATACATGT
Found at i:40584 original size:32 final size:34
Alignment explanation
Indices: 40503--40587 Score: 104
Period size: 36 Copynumber: 2.5 Consensus size: 34
40493 AAGTGATTGT
**
40503 GAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGGTTCTATCTTAGCCCGTGAAAAAGATAGAGA
40537 GAAAGGTTCTATCTTAGCCCGTG-AAAAGATAG-G-
1 G--AGGTTCTATCTTAGCCCGTGAAAAAGATAGAGA
40570 GAGGCTTCTATCTTAGCC
1 GAGG-TTCTATCTTAGCC
40588 TTGAAAGATA
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
31 3 0.07
32 13 0.28
33 1 0.02
34 2 0.04
35 9 0.20
36 18 0.39
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (34 bp):
GAGGTTCTATCTTAGCCCGTGAAAAAGATAGAGA
Found at i:41793 original size:20 final size:20
Alignment explanation
Indices: 41768--41902 Score: 126
Period size: 20 Copynumber: 6.6 Consensus size: 20
41758 TAACTAGATA
41768 TATCGATACATTGAACAATG
1 TATCGATACATTGAACAATG
*
41788 TATCGATACATTAAACAATG
1 TATCGATACATTGAACAATG
* * * *
41808 TATCTATACATCTGGGTAGAATA
1 TATCGATACAT-T--GAACAATG
* *
41831 TATTGATACATTGAAGAATG
1 TATCGATACATTGAACAATG
* * * *
41851 TATCGATATATTCATCTATG
1 TATCGATACATTGAACAATG
* *
41871 TATCGATAGATTGAAAAATG
1 TATCGATACATTGAACAATG
41891 TATCGATACATT
1 TATCGATACATT
41903 CGGATAAAAA
Statistics
Matches: 90, Mismatches: 22, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
20 75 0.83
21 1 0.01
22 1 0.01
23 13 0.14
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.35
Consensus pattern (20 bp):
TATCGATACATTGAACAATG
Found at i:42592 original size:22 final size:22
Alignment explanation
Indices: 42567--42612 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
42557 AAAGTCTTTT
*
42567 TTTTGAGGTAATAAATAATTAA
1 TTTTGAGGTAATAAAAAATTAA
* * *
42589 TTTTTATGTATTAAAAAATTAA
1 TTTTGAGGTAATAAAAAATTAA
42611 TT
1 TT
42613 AATATTAATG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (22 bp):
TTTTGAGGTAATAAAAAATTAA
Found at i:42805 original size:33 final size:32
Alignment explanation
Indices: 42760--42833 Score: 78
Period size: 33 Copynumber: 2.2 Consensus size: 32
42750 TATATCGATA
* * *
42760 AAAATATTATATTTTAATATAT-ATTTAATATTT
1 AAAAT-TTATA-TTAAATAAATAATTAAATATTT
42793 AAAATTTGATATTAAATAAATAATTAAATATTT
1 AAAATTT-ATATTAAATAAATAATTAAATATTT
*
42826 TAAATTTA
1 AAAATTTA
42834 ATAATAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
32 11 0.31
33 24 0.69
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (32 bp):
AAAATTTATATTAAATAAATAATTAAATATTT
Found at i:42856 original size:34 final size:33
Alignment explanation
Indices: 42786--42856 Score: 81
Period size: 33 Copynumber: 2.1 Consensus size: 33
42776 ATATATATTT
* * *
42786 AATATTTAAAATTTGATATTAAATAAATAATTA
1 AATATTTAAAATTTAATATAAAATAAATAATAA
*
42819 AATATTTTAAATTTAATAATAAAATAAA-ATATAA
1 AATATTTAAAATTTAAT-ATAAAATAAATA-ATAA
42853 AATA
1 AATA
42857 ATCAAATTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 16 0.50
34 16 0.50
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.39
Consensus pattern (33 bp):
AATATTTAAAATTTAATATAAAATAAATAATAA
Found at i:44858 original size:12 final size:12
Alignment explanation
Indices: 44841--44866 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
44831 AGGAACAACC
44841 TGGCATCAGTAG
1 TGGCATCAGTAG
44853 TGGCATCAGTAG
1 TGGCATCAGTAG
44865 TG
1 TG
44867 ACAGTGGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.27
Consensus pattern (12 bp):
TGGCATCAGTAG
Found at i:46235 original size:15 final size:16
Alignment explanation
Indices: 46204--46236 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
46194 TGTATATAGT
46204 TATCATATGCACAACC
1 TATCATATGCACAACC
*
46220 TATCATTTGC-CAACC
1 TATCATATGCACAACC
46235 TA
1 TA
46237 CTCCCTCCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.33, C:0.30, G:0.06, T:0.30
Consensus pattern (16 bp):
TATCATATGCACAACC
Found at i:49900 original size:19 final size:20
Alignment explanation
Indices: 49876--49923 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
49866 AATATAAAAA
*
49876 ATAAATATAATATAA-TTTT
1 ATAAATATAATAAAATTTTT
*
49895 ATAAATATATTAAAATTTTT
1 ATAAATATAATAAAATTTTT
49915 ATAAA-ATAA
1 ATAAATATAA
49924 ATTATTAACG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 16 0.64
20 9 0.36
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
ATAAATATAATAAAATTTTT
Found at i:49918 original size:33 final size:32
Alignment explanation
Indices: 49880--49955 Score: 80
Period size: 32 Copynumber: 2.3 Consensus size: 32
49870 TAAAAAATAA
* *
49880 ATATAATATAATTTTATAAATATATTAAAATTT
1 ATATAATATAA-ATTATAAACATATTAAAATTT
* * * *
49913 TTATAAAATAAATTATTAACGTATTAAAATTT
1 ATATAATATAAATTATAAACATATTAAAATTT
49945 ATATAAATATA
1 ATAT-AATATA
49956 TAATATTTTA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
32 20 0.59
33 14 0.41
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (32 bp):
ATATAATATAAATTATAAACATATTAAAATTT
Found at i:50589 original size:15 final size:16
Alignment explanation
Indices: 50555--50591 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
50545 TTTTTAAAAT
50555 TTATA-TGAATATATA
1 TTATATTGAATATATA
*
50570 ATATATTGAATATA-A
1 TTATATTGAATATATA
50585 TTATATT
1 TTATATT
50592 ATAAAAAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (16 bp):
TTATATTGAATATATA
Found at i:54979 original size:20 final size:20
Alignment explanation
Indices: 54954--55169 Score: 101
Period size: 20 Copynumber: 9.7 Consensus size: 20
54944 TTTTAACTAG
54954 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
54974 ATGTATCGATACATCCTGGTAAAAAGACAAA
1 ATGTATCGATACAT--T-G-----A-A-A-A
* *
55005 ATGTATCGATATATTGAAGA
1 ATGTATCGATACATTGAAAA
* * *
55025 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTGAAAA
* *
55045 ATGTATCCATACATTGAAGA
1 ATGTATCGATACATTGAAAA
55065 ATGTATCGATACATCTGGGTAAAAGGATAGA
1 ATGTATCGATACAT-T--G----A--A-A-A
*
55096 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAAAA
* *** *
55116 ATGCATCGATACATTCTTAC
1 ATGTATCGATACATTGAAAA
55136 ATGTATCGATACATT-AAAGA
1 ATGTATCGATACATTGAAA-A
55156 ATGTATCGATACAT
1 ATGTATCGATACAT
55170 CTGGGTACCT
Statistics
Matches: 148, Mismatches: 25, Indels: 46
0.68 0.11 0.21
Matches are distributed among these distances:
19 1 0.01
20 101 0.68
21 1 0.01
22 3 0.02
23 3 0.02
24 1 0.01
27 1 0.01
28 3 0.02
29 3 0.02
30 2 0.01
31 29 0.20
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:55012 original size:51 final size:49
Alignment explanation
Indices: 54954--55173 Score: 181
Period size: 40 Copynumber: 4.8 Consensus size: 49
54944 TTTTAACTAG
*
54954 ATGTATCGATACATTGAAAAATGTATCGATACATCCTGGTAAAAAGACAAA
1 ATGTATCGATACATTGAAGAATGTATCGATACAT-CTGGTAAAAAGAC-AA
* * *
55005 ATGTATCGATATATTGAAGAATGTATCGATACA--T--T---CATAC--
1 ATGTATCGATACATTGAAGAATGTATCGATACATCTGGTAAAAAGACAA
* * *
55045 ATGTATCCATACATTGAAGAATGTATCGATACATCTGGGTAAAAGGATAGA
1 ATGTATCGATACATTGAAGAATGTATCGATACATCT-GGTAAAAAGACA-A
*
55096 ATGTATCGATACATTGAAGAATGCATCGATACATTCT--T------AC--
1 ATGTATCGATACATTGAAGAATGTATCGATACA-TCTGGTAAAAAGACAA
*
55136 ATGTATCGATACATTAAAGAATGTATCGATACATCTGG
1 ATGTATCGATACATTGAAGAATGTATCGATACATCTGG
55174 GTACCTTTCC
Statistics
Matches: 140, Mismatches: 15, Indels: 38
0.73 0.08 0.20
Matches are distributed among these distances:
39 3 0.02
40 62 0.44
42 1 0.01
43 4 0.03
45 1 0.01
46 1 0.01
48 2 0.01
49 1 0.01
51 62 0.44
52 3 0.02
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (49 bp):
ATGTATCGATACATTGAAGAATGTATCGATACATCTGGTAAAAAGACAA
Found at i:55062 original size:91 final size:92
Alignment explanation
Indices: 54954--55176 Score: 337
Period size: 91 Copynumber: 2.5 Consensus size: 92
54944 TTTTAACTAG
*
54954 ATGTATCGATACATTGAAAAATGTATCGATACATCCT-GGTAAAAAGACAAAATGTATCGATATA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCCTGGGTAAAAAGACAAAATGTATCGATACA
*
55018 TTGAAGAATGTATCGATACATTCATAC
66 TTGAAGAATGCATCGATACATTCATAC
* * * * *
55045 ATGTATCCATACATTGAAGAATGTATCGATACAT-CTGGGTAAAAGGATAGAATGTATCGATACA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCCTGGGTAAAAAGACAAAATGTATCGATACA
*
55109 TTGAAGAATGCATCGATACATTCTTAC
66 TTGAAGAATGCATCGATACATTCATAC
55136 ATGTATCGATACATT-AAAGAATGTATCGATACAT-CTGGGTA
1 ATGTATCGATACATTGAAA-AATGTATCGATACATCCTGGGTA
55177 CCTTTCCATA
Statistics
Matches: 120, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
90 4 0.03
91 116 0.97
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.30
Consensus pattern (92 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCCTGGGTAAAAAGACAAAATGTATCGATACA
TTGAAGAATGCATCGATACATTCATAC
Found at i:55855 original size:28 final size:28
Alignment explanation
Indices: 55741--56211 Score: 567
Period size: 28 Copynumber: 16.5 Consensus size: 28
55731 CACTAACTTG
* *
55741 TGTGGGCTTTGAAAAGAGTTGCCACCGAATTT
1 TGTGGGCTTTG-AAAGAG-TGCCACTG-A-CT
*
55773 TGTGGGCTTTGAAAAGAGTCACCACTTG-CT
1 TGTGGGCTTTG-AAAGAGT-GCCAC-TGACT
55803 TGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTG-AAAGAGTGCCACTGACT
*
55832 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGAGTGCCACTGACT
* *
55860 TGTGAGCTTTGAAAG-GATGCCACTAACT
1 TGTGGGCTTTGAAAGAG-TGCCACTGACT
*
55888 TGTGGGCTTTGAAAG-GATGCCACTAACT
1 TGTGGGCTTTGAAAGAG-TGCCACTGACT
* *
55916 TATGGGCTTTGAAAATAGTGCCACTGACT
1 TGTGGGCTTTG-AAAGAGTGCCACTGACT
*
55945 TGTGAGCTTTGAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAGAGTGCCACTGACT
* *
55973 CGTGGGC-TTGAAAAAGTGCCACTGACT
1 TGTGGGCTTTGAAAGAGTGCCACTGACT
*
56000 CGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTG-AAAGAGTGCCACTGACT
* * *
56029 TGTGGGCTTTGAAAAGAGTGTCACTAATT
1 TGTGGGCTTTG-AAAGAGTGCCACTGACT
* *
56058 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGAGTGCCACTGACT
56086 TGTGGGCTTTGAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAGAGTGCCACTGACT
56114 TGTGGGCTTTGAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAGAGTGCCACTGACT
* *
56142 CGTGGGC-TTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGAGTGCCACTGACT
*
56169 CGTGGGCTTTGAAAAGAGTGCCACTGA-T
1 TGTGGGCTTTG-AAAGAGTGCCACTGACT
*
56197 TGGTTGGCTTTGAAA
1 T-GTGGGCTTTGAAA
56212 AGGGATGAAC
Statistics
Matches: 394, Mismatches: 34, Indels: 26
0.87 0.07 0.06
Matches are distributed among these distances:
27 53 0.13
28 183 0.46
29 113 0.29
30 21 0.05
31 1 0.00
32 22 0.06
33 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGAGTGCCACTGACT
Found at i:55972 original size:113 final size:114
Alignment explanation
Indices: 55741--56211 Score: 598
Period size: 113 Copynumber: 4.1 Consensus size: 114
55731 CACTAACTTG
* * *
55741 TGTGGGCTTTGAAAAGAGTTGCCACCGAATTTTGTGGGCTTTGAAAAGAGTCACCACTTG-CTTG
1 TGTGGGCTTTG-AAAGAG-TGCCACTG-A-CTTGTGGGCTTTGAAAAGAGT-GCCAC-TGACTTG
*
55805 TGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
60 TGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACT
* * * * *
55860 TGTGAGCTTTGAAAG-GATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTAACTTATGGGC
1 TGTGGGCTTTGAAAGAG-TGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
55923 TTTGAAAATAGTGCCACTGACTTGTGAGCTTTGAAAGAGTGCCACTGACT
65 TTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACT
* * *
55973 CGTGGGC-TTGAAAAAGTGCCACTGACTCGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCT
* * * * *
56037 TTGAAAAGAGTGTCACTAATTTGTGGGCTTTAAAAGGGTGCCACTGACT
66 TTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACT
*
56086 TGTGGGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGAGTGCCACTGACTCGTGGGC-
1 TGTGGGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCT
* *
56149 TTG-AAAGGGTGCCACTGACTCGTGGGCTTTGAAAAGAGTGCCACTGA-T
66 TTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGAGTGCCACTGACT
*
56197 TGGTTGGCTTTGAAA
1 T-GTGGGCTTTGAAA
56212 AGGGATGAAC
Statistics
Matches: 307, Mismatches: 39, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
111 24 0.08
112 61 0.20
113 153 0.50
114 30 0.10
115 17 0.06
116 1 0.00
117 7 0.02
118 4 0.01
119 10 0.03
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (114 bp):
TGTGGGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCT
TTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACT
Found at i:56212 original size:169 final size:169
Alignment explanation
Indices: 55731--56213 Score: 652
Period size: 169 Copynumber: 2.8 Consensus size: 169
55721 AAAAATGGTA
* * *
55731 CACTAACTTGTGTGGGCTTTGAAAAGAGTTGCCACCGAATTTTGTGGGCTTTGAAAAGAGTCACC
1 CACTAAC-T-TGTGGGCTTTGAAAAGAG-TGCCACTG-A-CTTGTGGGCTTTG-AAAGAGT-GCC
* * *
55796 ACTTG-CTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGAC
59 AC-TGACTCGTGGGC-TTG-AAAGAGTGCCACTGACTCGTGGGCTTTGAAAAGAGTGCCACTGAC
* *
55859 TTG-TGAGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGC
121 TTGTTG-GCTTTGAAAAGATGCCACTAACTTGTGGGCTTTAAAAGGATGC
* * *
55908 CACTAACTTATGGGCTTTGAAAATAGTGCCACTGACTTGTGAGCTTTGAAAGAGTGCCACTGACT
1 CACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACT
* *
55973 CGTGGGCTTGAAAAAGTGCCACTGACTCGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTT
66 CGTGGGCTTGAAAGAGTGCCACTGACTCGTGGGCTTTGAAAAGAGTGCCACTGACTTGTTGGCTT
* * *
56038 TGAAAAGAGTGTCACTAATTTGTGGGCTTTAAAAGGGTGC
131 TGAAAAGA-TGCCACTAACTTGTGGGCTTTAAAAGGATGC
*
56078 CACTGACTTGTGGGCTTTG-AAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACT
1 CACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACT
*
56142 CGTGGGCTTGAAAGGGTGCCACTGACTCGTGGGCTTTGAAAAGAGTGCCACTGA-TTGGTTGGCT
66 CGTGGGCTTGAAAGAGTGCCACTGACTCGTGGGCTTTGAAAAGAGTGCCACTGACTT-GTTGGCT
56206 TTGAAAAG
130 TTGAAAAG
56214 GGATGAACGT
Statistics
Matches: 278, Mismatches: 23, Indels: 18
0.87 0.07 0.06
Matches are distributed among these distances:
168 28 0.10
169 143 0.51
170 57 0.21
171 7 0.03
172 11 0.04
173 1 0.00
174 7 0.03
175 16 0.06
176 1 0.00
177 7 0.03
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (169 bp):
CACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACT
CGTGGGCTTGAAAGAGTGCCACTGACTCGTGGGCTTTGAAAAGAGTGCCACTGACTTGTTGGCTT
TGAAAAGATGCCACTAACTTGTGGGCTTTAAAAGGATGC
Found at i:59025 original size:13 final size:12
Alignment explanation
Indices: 59003--59057 Score: 58
Period size: 13 Copynumber: 4.4 Consensus size: 12
58993 ATTCGTAAAA
59003 AAAAAAAACAAC
1 AAAAAAAACAAC
*
59015 AGAAAACAACAAC
1 A-AAAAAAACAAC
*
59028 AAAAAAAATTAA-
1 AAAAAAAA-CAAC
59040 AAAAATAAACAAC
1 AAAAA-AAACAAC
59053 AAAAA
1 AAAAA
59058 GGGTTCGGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
12 14 0.40
13 21 0.60
ACGTcount: A:0.80, C:0.13, G:0.02, T:0.05
Consensus pattern (12 bp):
AAAAAAAACAAC
Found at i:60608 original size:27 final size:27
Alignment explanation
Indices: 60578--60643 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
60568 CATGACTCCG
60578 TGGCATCCTTTTAAGTCAACAACTTCA
1 TGGCATCCTTTTAAGTCAACAACTTCA
* * * *
60605 TGGCACCCTTTTGAGTCCACAACTTCG
1 TGGCATCCTTTTAAGTCAACAACTTCA
*
60632 TGGCATCTTTTT
1 TGGCATCCTTTT
60644 CTTTTCAAAG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.36
Consensus pattern (27 bp):
TGGCATCCTTTTAAGTCAACAACTTCA
Found at i:60699 original size:31 final size:32
Alignment explanation
Indices: 60664--60834 Score: 161
Period size: 31 Copynumber: 5.4 Consensus size: 32
60654 TCCACAACTC
*
60664 GGTGGCAACCCTTCT-AAAGCCTACACAAGTT
1 GGTGGCAACCCTTCTCAAAGCCCACACAAGTT
60695 GGTGGCAACCCTTCCTCAAAGCCCACACAAGTT
1 GGTGGCAACCCTT-CTCAAAGCCCACACAAGTT
* * * * * * *
60728 GGTGGTAA-TCTTTTGAAAGCCCATAAAAGTC
1 GGTGGCAACCCTTCTCAAAGCCCACACAAGTT
* * * *
60759 GGT-GAAAACTTTCTCAAAGCCCATACAAGTT
1 GGTGGCAACCCTTCTCAAAGCCCACACAAGTT
* *
60790 GGT-GAAAACCTTCTCAAAGGCCCACACAAGTT
1 GGTGGCAACCCTTCTCAAA-GCCCACACAAGTT
*
60822 GGTGGCATCCCTT
1 GGTGGCAACCCTT
60835 TCCAAACCCA
Statistics
Matches: 115, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
30 3 0.03
31 64 0.56
32 20 0.17
33 28 0.24
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (32 bp):
GGTGGCAACCCTTCTCAAAGCCCACACAAGTT
Found at i:60983 original size:52 final size:51
Alignment explanation
Indices: 60900--61305 Score: 218
Period size: 52 Copynumber: 7.7 Consensus size: 51
60890 ATTCTCAAGC
* * * * * *
60900 CCAATATCGTTGGCCTTGAATCAGCATATTGGCACATTTACCATTTTTAAGC
1 CCAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTT-CCATTTTTAAGT
*
60952 CCAATGTCGCTGGCCTTGAATTAGCACATTGGCATTCTTCTCATCCTTATCATCTTTAAGT
1 CCAATGTCGCTGGCCTTGAATTAGCACATTGGCA--C--CT-TTCC--AT--T-TTTAAGT
* * *
61013 CTAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTTTTC-TTCCTTAAGT
1 CCAATGTCGCTGGCCTTGAATTAGCACATTGGCACC-TTTCCATT-TTTAAGT
* * * * * * * * *
61065 CCAATATCGATGACCTT--ATTAGCACCTT-TC-TCATTCTTATCTTTAAGT
1 CCAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTTC-CATTTTTAAGT
* * * * *
61113 CTAATGTCACTGGCCTTAAATCAGCACATTGGCACCTTCTTC-TTTCTTAAGT
1 CCAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTT-TCCATTT-TTAAGT
** * * * *
61165 CTGATATCGCTGGCCTTGAATTAGCATATTGGCACCTTTCTCATCTTTGAGT
1 CCAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTTC-CATTTTTAAGT
* * * * * * *
61217 CCAATGTCGTTGGCCTTGAATCAGTACATTGACACTTTTGCCATCTTTAA-A
1 CCAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTT-CCATTTTTAAGT
*
61268 CCTAA-GATCG-TGGGCCTTGAATTAGCATATTGGCACCT
1 CC-AATG-TCGCT-GGCCTTGAATTAGCACATTGGCACCT
61306 CTATCGTTTT
Statistics
Matches: 268, Mismatches: 61, Indels: 50
0.71 0.16 0.13
Matches are distributed among these distances:
47 2 0.01
48 19 0.07
49 2 0.01
50 19 0.07
51 8 0.03
52 161 0.60
53 4 0.01
54 2 0.01
56 3 0.01
57 4 0.01
58 3 0.01
59 1 0.00
60 1 0.00
61 39 0.15
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.37
Consensus pattern (51 bp):
CCAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTTCCATTTTTAAGT
Found at i:61246 original size:104 final size:104
Alignment explanation
Indices: 61098--61305 Score: 242
Period size: 104 Copynumber: 2.0 Consensus size: 104
61088 ACCTTTCTCA
* * * **
61098 TTCTTATCTTTAAGTCTAATGTCACTGGCCTTAAATCAGCACATTGGCACCTTCTT-CTTTC-TT
1 TTCTCATCTTTAAGTCCAATGTCACTGGCCTTAAATCAGCACATTGACA-CTT-TTGCCATCTTT
** * *
61161 AAGTCTGATATCGCT-GGCCTTGAATTAGCATATTGGCACCT
64 AAACCTAAGATCG-TGGGCCTTGAATTAGCATATTGGCACCT
* ** * *
61202 TTCTCATCTTTGAGTCCAATGTCGTTGGCCTTGAATCAGTACATTGACACTTTTGCCATCTTTAA
1 TTCTCATCTTTAAGTCCAATGTCACTGGCCTTAAATCAGCACATTGACACTTTTGCCATCTTTAA
61267 ACCTAAGATCGTGGGCCTTGAATTAGCATATTGGCACCT
66 ACCTAAGATCGTGGGCCTTGAATTAGCATATTGGCACCT
61306 CTATCGTTTT
Statistics
Matches: 87, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
102 2 0.02
103 7 0.08
104 78 0.90
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.37
Consensus pattern (104 bp):
TTCTCATCTTTAAGTCCAATGTCACTGGCCTTAAATCAGCACATTGACACTTTTGCCATCTTTAA
ACCTAAGATCGTGGGCCTTGAATTAGCATATTGGCACCT
Found at i:69623 original size:22 final size:21
Alignment explanation
Indices: 69592--69632 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
69582 TTAAGTCCTT
*
69592 TATTTGAATTTCTCAATTTGCA
1 TATTTAAATTT-TCAATTTGCA
*
69614 TATTTAAATTTTTAATTTG
1 TATTTAAATTTTCAATTTG
69633 TAAAAGATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.56
Consensus pattern (21 bp):
TATTTAAATTTTCAATTTGCA
Found at i:74306 original size:79 final size:79
Alignment explanation
Indices: 74169--74323 Score: 175
Period size: 79 Copynumber: 2.0 Consensus size: 79
74159 TTAACCTTAG
* * *** *
74169 TTTTATTTCTAATACATCGATTTTCCACAATCGGGGATACTCCAACCTTATTACTTTCGAAAGGA
1 TTTTATTTCTAAAACACCGATTTTCCACAATCAAAGATACTCCAACCCTATTACTTTCGAAAGGA
*
74234 TACTTCAACCCCGA
66 TACTCCAACCCCGA
* * ** * * **
74248 TTTTATTTCTAAAACACCGATTTTTCACCATCAAAGATACTTTAACCCTGTTATTTTCGAGGGGA
1 TTTTATTTCTAAAACACCGATTTTCCACAATCAAAGATACTCCAACCCTATTACTTTCGAAAGGA
74313 TACTCCAACCC
66 TACTCCAACCC
74324 TGTTATTTTC
Statistics
Matches: 61, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
79 61 1.00
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (79 bp):
TTTTATTTCTAAAACACCGATTTTCCACAATCAAAGATACTCCAACCCTATTACTTTCGAAAGGA
TACTCCAACCCCGA
Found at i:74323 original size:28 final size:28
Alignment explanation
Indices: 74291--74351 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
74281 AAGATACTTT
74291 AACCCTGTTATTTTCGAGGGGATACTCC
1 AACCCTGTTATTTTCGAGGGGATACTCC
*
74319 AACCCTGTTATTTTCGAGGGGATACTCT
1 AACCCTGTTATTTTCGAGGGGATACTCC
74347 AACCC
1 AACCC
74352 CGATTTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (28 bp):
AACCCTGTTATTTTCGAGGGGATACTCC
Found at i:77132 original size:51 final size:51
Alignment explanation
Indices: 77057--77234 Score: 216
Period size: 51 Copynumber: 3.5 Consensus size: 51
77047 AAATTTCTAG
* * * *
77057 ATTTTTCAT-CTCGGGGATACTCCAA-TCCCGGTTTCATTTCCAAAACATCA
1 ATTTTTCATAATCGGGGATACTCCAACT-CCGATTTTATTTCCAAAACACCA
* * * *
77107 ATTTTTCTTAATTGGGGATACTCCAACTCCGATTTTATTTCTAAAACACCC
1 ATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCA
* * *
77158 ATTTTCCATAATCGGGGATACTCCAACTCCAATTTTATTTCCAAAACACCG
1 ATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCA
* *
77209 ATTTTTCATAATCAGGAATACTCCAA
1 ATTTTTCATAATCGGGGATACTCCAA
77235 TCTCGTTATT
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
50 8 0.07
51 100 0.92
52 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (51 bp):
ATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCA
Found at i:77259 original size:79 final size:80
Alignment explanation
Indices: 77171--77394 Score: 249
Period size: 80 Copynumber: 2.8 Consensus size: 80
77161 TTCCATAATC
* * *
77171 GGGGATACTCCAACTCCAATTTTATTTCCAAAACACCGATTTTTCATAATCAGGAATACTCCAA-
1 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCGATTTTTCATAATCGGGGATACTCCAAC
77235 TCTCG-TTATTTCCA-A
66 TC-CGATTATTT-CATA
* * * *
77250 GGGGATACTCCAA-TCTCGATTTTATTTCTAAAACACCAATTCTCCATAATCGGGGATACTCCAA
1 GGGGATACTCCAACTC-CGATTTTATTTCCAAAACACCGATTTTTCATAATCGGGGATACTCCAA
*
77314 CTCCGATTATTTCATC
65 CTCCGATTATTTCATA
* ** * ** * *
77330 GGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCATAATCGGGGATACTTCAAC
1 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCGATTTTTCATAATCGGGGATACTCCAAC
77395 CCCGGCCTTA
Statistics
Matches: 120, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
78 2 0.02
79 58 0.48
80 59 0.49
81 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.32
Consensus pattern (80 bp):
GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCGATTTTTCATAATCGGGGATACTCCAAC
TCCGATTATTTCATA
Found at i:77387 original size:51 final size:51
Alignment explanation
Indices: 77327--77449 Score: 210
Period size: 51 Copynumber: 2.4 Consensus size: 51
77317 CGATTATTTC
*
77327 ATCGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCATA
1 ATCGGGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCATA
* *
77378 ATCGGGGATACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCATA
1 ATCGGGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCATA
*
77429 ATCAGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
77450 TTATTTCCGA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 67 1.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.31
Consensus pattern (51 bp):
ATCGGGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCATA
Found at i:77474 original size:79 final size:79
Alignment explanation
Indices: 77381--77558 Score: 241
Period size: 79 Copynumber: 2.2 Consensus size: 79
77371 TCTCATAATC
* * * *
77381 GGGGATACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCATAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGACCTTATTTCTAAAATATTAATTTCTCACAATCAGGGATACTCCAAC
77446 CCCGTTATTTCCGA
66 CCCGTTATTTCCGA
* *
77460 GGGGATACTCCAACCTCGACCTTATTTCTAAAATATTAATTTCTCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGACCTTATTTCTAAAATATTAATTTCTCACAATCAGGGATACTCCAA-
* *
77525 CCCCATTATTTTC-A
65 CCCCGTTATTTCCGA
* *
77539 CGGGGATACTTCAATCCCGA
1 -GGGGATACTCCAACCCCGA
77559 TTTTATTTTC
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
79 59 0.69
80 27 0.31
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGACCTTATTTCTAAAATATTAATTTCTCACAATCAGGGATACTCCAAC
CCCGTTATTTCCGA
Found at i:77502 original size:130 final size:132
Alignment explanation
Indices: 77289--77527 Score: 356
Period size: 130 Copynumber: 1.8 Consensus size: 132
77279 AAAACACCAA
* * ** * *
77289 TTCTCCATAATCGGGGATACTCCAACTCCGATTATTTCATCGGGGATACTCCAACCCCGGCTTTA
1 TTCTCCATAATCAGGGATACTCCAACCCCGATTATTTCAGAGGGGATACTCCAACCCCGACCTTA
* * *
77354 TTTCCAAAATATTGATTTCTCATAATCGGGGATACTTCAACCCCGGCCTTATTTCTAAAATATTG
66 TTTCCAAAATATTAATTTCTCACAATCGGGGATACTCCAACCCCGGCCTTATTTCTAAAATATTG
77419 AT
131 AT
* *
77421 TTCT-CATAATCAGGGATACTCCAACCCCG-TTATTTCCGAGGGGATACTCCAACCTCGACCTTA
1 TTCTCCATAATCAGGGATACTCCAACCCCGATTATTTCAGAGGGGATACTCCAACCCCGACCTTA
*
77484 TTTCTAAAATATTAATTTCTCACAATCGGGGATACTCCAACCCC
66 TTTCCAAAATATTAATTTCTCACAATCGGGGATACTCCAACCCC
77528 CATTATTTTC
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
130 68 0.72
131 23 0.24
132 4 0.04
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (132 bp):
TTCTCCATAATCAGGGATACTCCAACCCCGATTATTTCAGAGGGGATACTCCAACCCCGACCTTA
TTTCCAAAATATTAATTTCTCACAATCGGGGATACTCCAACCCCGGCCTTATTTCTAAAATATTG
AT
Found at i:77581 original size:80 final size:79
Alignment explanation
Indices: 77381--77602 Score: 207
Period size: 79 Copynumber: 2.8 Consensus size: 79
77371 TCTCATAATC
* * * * *** *
77381 GGGGATACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCATAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCTCGACCTTATTTCTAAAACACCAATTTCTCATAATCGGGGATACTCCAAC
*
77446 CCCGTTATTTCCGA
66 CCCATTATTTCCGA
* ** *
77460 GGGGATACTCCAACCTCGACCTTATTTCTAAAATATTAATTTCTCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCTCGACCTTATTTCTAAAACACCAATTTCTCATAATCGGGGATACTCCAA-
*
77525 CCCCATTATTTTC-A
65 CCCCATTATTTCCGA
* ** * * *
77539 CGGGGATACTTCAATCC-CGATTTTATTT-TCAGAACACCAATTTTTCATAATTGGGGATACTCC
1 -GGGGATACTCCAA-CCTCGACCTTATTTCT-AAAACACCAATTTCTCATAATCGGGGATACTCC
77602 A
63 A
77603 GCCTCGTTGT
Statistics
Matches: 121, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
79 60 0.50
80 59 0.49
81 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (79 bp):
GGGGATACTCCAACCTCGACCTTATTTCTAAAACACCAATTTCTCATAATCGGGGATACTCCAAC
CCCATTATTTCCGA
Found at i:77589 original size:210 final size:209
Alignment explanation
Indices: 77120--77602 Score: 558
Period size: 210 Copynumber: 2.3 Consensus size: 209
77110 TTTCTTAATT
* *
77120 GGGGATACTCCAACTCCGATTTTA-TTTCTAAAACACCCATTTTCCATAATCGGGGATACTCCAA
1 GGGGATACTCCAAC-CCGATTTTATTTTC-AAAACACCAATTTTTCATAATCGGGGATACTCCAA
* ** * * *
77184 CTCCAATTTTATTTCCAAAACACCGATTTTTCATAATCAGGAATACTCCAATCTCGTTATTTCCA
64 CCCCAACCTTATTTCCAAAACACCGATTTCTCATAATCAGGAATACTCCAACCCCGTTATTTCCA
* ** *
77249 AGGGGATACTCCAATCTCGATTTTATTTCTAAAACACCAATTCTCCATAATCGGGGATACTCCAA
129 AGGGGATACTCCAACCTCGACCTTATTTCTAAAACACCAATTCTCCACAATCGGGGATACTCCAA
* *
77314 CTCCGATTATTTCATC
194 CCCCCATTATTTCATC
** * * *** * *
77330 GGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCATAATCGGGGATACTTCAAC
1 GGGGATACTCCAA-CCCGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATACTCCAAC
** * * ** * *
77395 CCCGGCCTTATTTCTAAAATATTGATTTCTCATAATCAGGGATACTCCAACCCCGTTATTTCCGA
65 CCCAACCTTATTTCCAAAACACCGATTTCTCATAATCAGGAATACTCCAACCCCGTTATTTCCAA
* **
77460 GGGGATACTCCAACCTCGACCTTATTTCTAAAATATTAATT-TCTCACAATCGGGGATACTCCAA
130 GGGGATACTCCAACCTCGACCTTATTTCTAAAACACCAATTCTC-CACAATCGGGGATACTCCAA
77524 CCCCCATTATTTTCA-C
194 CCCCCATTA-TTTCATC
* * *
77540 GGGGATACTTCAATCCCGATTTTATTTTCAGAACACCAATTTTTCATAATTGGGGATACTCCA
1 GGGGATACTCCAA-CCCGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATACTCCA
77603 GCCTCGTTGT
Statistics
Matches: 223, Mismatches: 46, Indels: 8
0.81 0.17 0.03
Matches are distributed among these distances:
209 2 0.01
210 212 0.95
211 9 0.04
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.33
Consensus pattern (209 bp):
GGGGATACTCCAACCCGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATACTCCAACC
CCAACCTTATTTCCAAAACACCGATTTCTCATAATCAGGAATACTCCAACCCCGTTATTTCCAAG
GGGATACTCCAACCTCGACCTTATTTCTAAAACACCAATTCTCCACAATCGGGGATACTCCAACC
CCCATTATTTCATC
Found at i:78440 original size:33 final size:33
Alignment explanation
Indices: 78403--78469 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
78393 TTCAACGATT
78403 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
78436 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
78469 T
1 T
78470 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:78441 original size:13 final size:13
Alignment explanation
Indices: 78423--78447 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78413 CATAAAATGT
78423 TGTATCGATACAA
1 TGTATCGATACAA
78436 TGTATCGATACA
1 TGTATCGATACA
78448 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:78530 original size:13 final size:13
Alignment explanation
Indices: 78512--78536 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78502 ATTACTCACA
78512 TGTATCGATACAT
1 TGTATCGATACAT
78525 TGTATCGATACA
1 TGTATCGATACA
78537 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:78673 original size:52 final size:52
Alignment explanation
Indices: 78545--78665 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
78535 CACTGATCTT
*
78545 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
78597 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
78649 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
78666 ATAAATTTTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:82481 original size:80 final size:79
Alignment explanation
Indices: 82388--82777 Score: 451
Period size: 79 Copynumber: 4.9 Consensus size: 79
82378 CTAACCTCGA
* *
82388 TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAACCCCGTTATTTCCGAGGAGA
1 TTTTATTTCTAAAACATCAATTTTTCACCATCGGGGATACTCCAACCCCGTTATTTCTGAGGAGA
*
82453 TACTCCAACCATAG
66 TACTCCAACCCTAG
* * **
82467 TTTTTATTTTTAAAATATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCTGAAGG-
1 -TTTTATTTCTAAAACATCAATTTTTCACCATCGGGGATACTCCAACCCCGTTATTTCTG-AGGA
*
82531 GATACTCTAACCCTAG
64 GATACTCCAACCCTAG
* ** * * * * *
82547 TTTTATTTCCAAAACATCAATTTTTCATAATTGGGGATACTCCAAACCCTTTATTTTTGAGGGGA
1 TTTTATTTCTAAAACATCAATTTTTCACCATCGGGGATACTCCAACCCCGTTATTTCTGAGGAGA
82612 TACTCCAA-CCTAGG
66 TACTCCAACCCTA-G
* ** ** ** *
82626 CTTTATTTCTAAAACATTGATTTTTCACCATCGGGGATACTCCAACCTTGTTATTTCCAAGGGGA
1 TTTTATTTCTAAAACATCAATTTTTCACCATCGGGGATACTCCAACCCCGTTATTTCTGAGGAGA
82691 TACTCCAACCCTAG
66 TACTCCAACCCTAG
* * * * * * * *
82705 TTTTATTTCCAAAACATCTATTTTCCAACATCGGGGATACTCCAACTCCATTATTTTTGGGGAGA
1 TTTTATTTCTAAAACATCAATTTTTCACCATCGGGGATACTCCAACCCCGTTATTTCTGAGGAGA
82770 TACTCCAA
66 TACTCCAA
82778 TCTCGTTTTT
Statistics
Matches: 261, Mismatches: 45, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
78 7 0.03
79 180 0.69
80 71 0.27
81 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.35
Consensus pattern (79 bp):
TTTTATTTCTAAAACATCAATTTTTCACCATCGGGGATACTCCAACCCCGTTATTTCTGAGGAGA
TACTCCAACCCTAG
Found at i:82601 original size:79 final size:78
Alignment explanation
Indices: 82344--82749 Score: 417
Period size: 79 Copynumber: 5.1 Consensus size: 78
82334 TTTTCGAGGA
* * * * *
82344 GATACTCCAAACCCATTTTTTTCGAAGGGATAATCTAA-CCTCGATTTTATTTCTAAAACATCGA
1 GATACTCCAAACCC-TTTATTTCGAAGGGATACTCCAACCCTAG-TTTTATTTCTAAAACATCAA
*
82408 TTTTTCACCATCGGG
64 TTTTTCACAATCGGG
* * * * *
82423 GATACTCCAACCCCGTTATTTCCG-AGGAGATACTCCAACCATAGTTTTTATTTTTAAAATATCA
1 GATACTCCAAACCCTTTATTT-CGAAGG-GATACTCCAACCCTAG-TTTTATTTCTAAAACATCA
*
82487 ATTTTTCATAATCGGG
63 ATTTTTCACAATCGGG
* * * *
82503 GATACTCCAACCCCGTTATTTCTGAAGGGATACTCTAACCCTAGTTTTATTTCCAAAACATCAAT
1 GATACTCCAAACCCTTTATTTC-GAAGGGATACTCCAACCCTAGTTTTATTTCTAAAACATCAAT
* *
82568 TTTTCATAATTGGG
65 TTTTCACAATCGGG
* * * **
82582 GATACTCCAAACCCTTTATTTTTGAGGGGATACTCCAA-CCTAGGCTTTATTTCTAAAACATTGA
1 GATACTCCAAACCCTTTA-TTTCGAAGGGATACTCCAACCCTA-GTTTTATTTCTAAAACATCAA
*
82646 TTTTTCACCATCGGG
64 TTTTTCACAATCGGG
* * * *
82661 GATACTCC-AACCTTGTTATTTCCAAGGGGATACTCCAACCCTAGTTTTATTTCCAAAACATCTA
1 GATACTCCAAACCCT-TTATTTCGAA-GGGATACTCCAACCCTAGTTTTATTTCTAAAACATCAA
*
82725 TTTTCCA-ACATCGGG
64 TTTTTCACA-ATCGGG
82740 GATACTCCAA
1 GATACTCCAA
82750 CTCCATTATT
Statistics
Matches: 274, Mismatches: 41, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
78 21 0.08
79 173 0.63
80 77 0.28
81 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (78 bp):
GATACTCCAAACCCTTTATTTCGAAGGGATACTCCAACCCTAGTTTTATTTCTAAAACATCAATT
TTTCACAATCGGG
Found at i:82789 original size:158 final size:157
Alignment explanation
Indices: 82344--82789 Score: 497
Period size: 158 Copynumber: 2.8 Consensus size: 157
82334 TTTTCGAGGA
* * * * * * * *
82344 GATACTCCAAACCCATT-TTTTTCGAAGGGATAATCTAA-CCTCGATTTTATTTCTAAAACATCG
1 GATACTCCAACCCCGTTATTTCTC-AAGGGATACTCCAACCCTAG-TTTTATTTCCAAAACATCA
* * ** *
82407 ATTTTTCACCATCGGGGATACTCCAACCCCGTTATTTCCGAGGAGATACTCCAACCATAGTTTTT
64 ATTTTTCAACATCGGGGATACTCCAA-CCCATTATTTTTGGGGAGATACTCCAACC-TAGTTTTT
* * *
82472 ATTTTTAAAATATCAATTTTTCATAATCGGG
127 ATTTCTAAAACATCAATTTTTCACAATCGGG
* *
82503 GATACTCCAACCCCGTTATTTCTGAAGGGATACTCTAACCCTAGTTTTATTTCCAAAACATCAAT
1 GATACTCCAACCCCGTTATTTCTCAAGGGATACTCCAACCCTAGTTTTATTTCCAAAACATCAAT
* * **
82568 TTTTCATA-ATTGGGGATACTCCAAACCCTTTATTTTTGAGGG-GATACTCCAACCTAGGCTTTA
66 TTTTCA-ACATCGGGGATACTCC-AACCCATTATTTTTG-GGGAGATACTCCAACCTAGTTTTTA
** *
82631 TTTCTAAAACATTGATTTTTCACCATCGGG
128 TTTCTAAAACATCAATTTTTCACAATCGGG
** *
82661 GATACTCCAACCTTGTTATTTC-CAAGGGGATACTCCAACCCTAGTTTTATTTCCAAAACATCTA
1 GATACTCCAACCCCGTTATTTCTCAA-GGGATACTCCAACCCTAGTTTTATTTCCAAAACATCAA
* * *
82725 TTTTCCAACATCGGGGATACTCCAACTCCATTATTTTTGGGGAGATACTCCAATCTCGTTTTTAT
65 TTTTTCAACATCGGGGATACTCCAAC-CCATTATTTTTGGGGAGATACTCCAACCTAGTTTTTAT
82790 CTCCAAAATA
Statistics
Matches: 244, Mismatches: 34, Indels: 19
0.82 0.11 0.06
Matches are distributed among these distances:
157 9 0.04
158 135 0.55
159 88 0.36
160 12 0.05
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (157 bp):
GATACTCCAACCCCGTTATTTCTCAAGGGATACTCCAACCCTAGTTTTATTTCCAAAACATCAAT
TTTTCAACATCGGGGATACTCCAACCCATTATTTTTGGGGAGATACTCCAACCTAGTTTTTATTT
CTAAAACATCAATTTTTCACAATCGGG
Found at i:87941 original size:16 final size:16
Alignment explanation
Indices: 87917--87953 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
87907 TCTCTTCTAC
*
87917 CAAACCAAAAAAAAAA
1 CAAAACAAAAAAAAAA
*
87933 CAAAACAAAACAAAAA
1 CAAAACAAAAAAAAAA
87949 CAAAA
1 CAAAA
87954 AACCTTGGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.81, C:0.19, G:0.00, T:0.00
Consensus pattern (16 bp):
CAAAACAAAAAAAAAA
Found at i:89025 original size:61 final size:61
Alignment explanation
Indices: 88948--89647 Score: 760
Period size: 62 Copynumber: 11.4 Consensus size: 61
88938 CCCCTTTTAG
* * *
88948 CCTTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCTACAAGAGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACGAGTTGGTGGCA
* * * * * *
89009 CTTTTTAGTCCTCAAAGATCAGGA---CATTTT-TTTTAAAACCCACACAAGCTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACGAGTTGGTGGCA
* *
89066 CCTTTTTAGTCCTCAAAGAGCA-TA-GCAC-TTTTCTTTTTCAAAGCCCACACGAGTTAGTGGCA
1 CC-TTTTAGTCCTCAAAGAGCAGGACGC-CTTTTTC-TTTT-AAAGCCCACACGAGTTGGTGGCA
* ** * *
89128 CC-TTTAGTCTTCAAAGAGCAGGAAACCTTTTTCTTTTCAAAGCCGACATGAGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTT-AAAGCCCACACGAGTTGGTGGCA
* * *
89189 CCTTTTAGTCCTCAAAGAGCAAGATGCCTTTTTTCTTTCAAAGCCCACACGAGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGACGCC-TTTTTCTTTTAAAGCCCACACGAGTTGGTGGCA
* * *
89251 CTCTTTTAGTCCTCAAAGAGCATGATGCCTTTTTCTTTTCAAGCCCACACGAGTTTGGTGGCA
1 C-CTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACGAG-TTGGTGGCA
* * * * *
89314 CC-TTTAGTCCTCAAAGAGCAAGACACCATTTTCTTTTCAAAGCCTACACGAATTGGTGGCAA
1 CCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTT-AAAGCCCACACGAGTTGGTGGC-A
* * * * *
89376 CC-TTTAGCCCTTAAAGAGTAGGACGTCTTTTTCTTTTTGAAGCCCACACGA---GGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTC-TTTTAAAGCCCACACGAGTTGGTGGCA
* * *
89434 CCTTTGAGTCCTCAAAGAGCAAGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTT-AAAGCCCACACGAGTTGGTGGCA
* * *
89496 CCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTGAAGCCCACACGAGCTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACGAGTTGGTGGCA
* * * *
89557 CCTTTTAGTCCTCATAGAGCAGGAAACTTTCATTTTTCTTTCTAAAGCCCACACAAGTTGGTGGC
1 CCTTTTAGTCCTCAAAGAGCAGG--AC--GCCTTTTTCTTT-TAAAGCCCACACGAGTTGGTGGC
89622 A
61 A
* *
89623 CCTTTTAGTCTTCAAAGAGTAGGAC
1 CCTTTTAGTCCTCAAAGAGCAGGAC
89648 TCATTTCCTT
Statistics
Matches: 540, Mismatches: 72, Indels: 51
0.81 0.11 0.08
Matches are distributed among these distances:
57 24 0.04
58 30 0.06
59 46 0.09
60 18 0.03
61 135 0.25
62 183 0.34
63 51 0.09
64 2 0.00
65 10 0.02
66 41 0.08
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (61 bp):
CCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACGAGTTGGTGGCA
Found at i:89848 original size:42 final size:42
Alignment explanation
Indices: 89650--90135 Score: 381
Period size: 42 Copynumber: 11.5 Consensus size: 42
89640 AGTAGGACTC
* *
89650 ATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAGGGCATA-TTT
1 ATTTCCTT-TTTT-CCTTTGTCCTCAAAGAGCAGGACACACTTT
* * * *
89693 CTTT-CTTTTCT-CTTTGTCCTCAAAGAGTAGGACACA-TCTC
1 ATTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACACACT-TT
* *
89733 ATTTCCTTCTTTTCCCTTTGTCCTAAAAGAGTAGGACACA-TTT
1 ATTTCCTT-TTTT-CCTTTGTCCTCAAAGAGCAGGACACACTTT
* *
89776 CATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAAGACATACTTT
1 -ATTTCCTT-TTTT-CCTTTGTCCTCAAAGAGCAGGACACACTTT
* *
89821 ATTTCCTTTTTTCTTTTGTCCTCAAAGAGCAGCACACA-TTT
1 ATTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACACACTTT
* * * * *
89862 CATTTCCTCATTTTCCTTTATCCTCAAAAAGTAGGACACA-TATC
1 -ATTTCCT-TTTTTCCTTTGTCCTCAAAGAGCAGGACACACT-TT
* * *
89906 ATTTCCTTCTTTTCCCTTTGTCTTCAAAGAGCAAGACACACTTG
1 ATTTCCTT-TTTT-CCTTTGTCCTCAAAGAGCAGGACACACTTT
* * * *
89950 ATTTCCTTTTCTACTTTGTCCTCAAAGAGCATG----A--TG
1 ATTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACACACTTT
* * *
89986 CTTTCCTTTTTTCCTTTGTCCTCAAGGAGCAGGACACA-TGTC
1 ATTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACACACT-TT
* * * *
90028 ATTTCTCTCTTTTCCTTTGTCTTCAAAGAGCATGACATACTTT
1 ATTTC-CTTTTTTCCTTTGTCCTCAAAGAGCAGGACACACTTT
* * * * * * *
90071 ATTTTCTTTTCTCCTTTATCCTTAATGAGCAAGG-CGCACTTC
1 ATTTCCTTTTTTCCTTTGTCCTCAAAGAGC-AGGACACACTTT
90113 ATTTCCTTTTTTCCTTTGTCCTC
1 ATTTCCTTTTTTCCTTTGTCCTC
90136 GAAAAGTAGG
Statistics
Matches: 357, Mismatches: 64, Indels: 45
0.77 0.14 0.10
Matches are distributed among these distances:
36 30 0.08
38 1 0.00
39 23 0.06
40 5 0.01
41 9 0.03
42 101 0.28
43 83 0.23
44 101 0.28
45 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (42 bp):
ATTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACACACTTT
Found at i:89912 original size:129 final size:127
Alignment explanation
Indices: 89648--90145 Score: 574
Period size: 129 Copynumber: 3.9 Consensus size: 127
89638 AGAGTAGGAC
* * *
89648 TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAGGGCATA-TTTCTTT-CTTTTCTCTTTGTC
1 TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAAGACATACTTTATTTCCTTTTCTCTTTGTC
*
89711 CTCAAAGAGTAGG-ACACATCTCATTTCCTTCTTTTCCCTTTGTCCT-AAAAGAGTAGGACACAT
66 CTCAAAGAGCAGGCACACAT-TCATTTCCTT-TTTT-CCTTTGTCCTCAAAA-AGTAGGACACAT
*
89774 T
127 A
*
89775 TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAAGACATACTTTATTTCCTTTTTTCTTTTGT
1 TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAAGACATACTTTATTTCCTTTTCTC-TTTGT
* *
89840 CCTCAAAGAGCA-GCACACATTTCATTTCCTCATTTTCCTTTATCCTCAAAAAGTAGGACACATA
65 CCTCAAAGAGCAGGCACACA-TTCATTTCCT-TTTTTCCTTTGTCCTCAAAAAGTAGGACACATA
* * *
89904 TCATTTCCTTCTTTTCCCTTTGTCTTCAAAGAGCAAGACACACTTGATTTCCTTTTCTACTTTGT
1 TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAAGACATACTTTATTTCCTTTTCT-CTTTGT
* * ** * *
89969 CCTCAAAGAGCATG-----ATGC-TTTCCTTTTTTCCTTTGTCCTCAAGGAGCAGGACACATG
65 CCTCAAAGAGCAGGCACACATTCATTTCCTTTTTTCCTTTGTCCTCAAAAAGTAGGACACATA
* * * *
90026 TCATTT-CTCTCTTTT-CCTTTGTCTTCAAAGAGCATGACATACTTTATTTTCTTTTCTCCTTTA
1 TCATTTCCT-TCTTTTCCCTTTGTCCTCAAAGAGCAAGACATACTTTATTTCCTTTTCT-CTTTG
* * * *
90089 TCCTTAATGAGCAAGGCGCAC-TTCATTTCCTTTTTTCCTTTGTCCTCGAAAAGTAGG
64 TCCTCAAAGAGC-AGGCACACATTCATTTCCTTTTTTCCTTTGTCCTCAAAAAGTAGG
90146 TCGTACTCTT
Statistics
Matches: 321, Mismatches: 33, Indels: 34
0.83 0.09 0.09
Matches are distributed among these distances:
121 54 0.17
122 41 0.13
123 6 0.02
124 2 0.01
125 1 0.00
126 2 0.01
127 68 0.21
128 6 0.02
129 100 0.31
130 40 0.12
131 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.12, T:0.41
Consensus pattern (127 bp):
TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAAGACATACTTTATTTCCTTTTCTCTTTGTC
CTCAAAGAGCAGGCACACATTCATTTCCTTTTTTCCTTTGTCCTCAAAAAGTAGGACACATA
Found at i:89956 original size:173 final size:165
Alignment explanation
Indices: 89649--90135 Score: 497
Period size: 173 Copynumber: 2.9 Consensus size: 165
89639 GAGTAGGACT
* *
89649 CATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAGGGCATATTTC--TT--TCTTTTCTCTTTGT
1 CATTTCCTT-TTTT-CCTTTGTCCTCAAAGAGCAGGACACATTTCATTTCCTCTTTTC-CTTTGT
* * * * *
89710 CCTCAAAGAGTAGGACACATCTCATTTCCTTCTTTTCCCTTTGTCCTAAAAGAGTAGGACACATT
63 CCTCAAAAAGTAGGACACATATCATTTCCTTCTTTTCCCTTTGTCCTAAAAGAGCAAGACACACT
* *
89775 TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAAGACATA
128 TCATTTCCTT-TTCT-ACTTTGTCCTCAAAGAGCAAG--ATA
* * *
89817 CTTTATTTCCTTTTTTCTTTTGTCCTCAAAGAGCAGCACACATTTCATTTCCTCATTTTCCTTTA
1 C---ATTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACACATTTCATTTCCTC-TTTTCCTTTG
* *
89882 TCCTCAAAAAGTAGGACACATATCATTTCCTTCTTTTCCCTTTGTCTTCAAAGAGCAAGACACAC
62 TCCTCAAAAAGTAGGACACATATCATTTCCTTCTTTTCCCTTTGTCCTAAAAGAGCAAGACACAC
* * *
89947 TTGATTTCCTTTTCTACTTTGTCCTCAAAGAGCATGATG
127 TTCATTTCCTTTTCTACTTTGTCCTCAAAGAGCAAGATA
* * *
89986 C-TTTCCTTTTTTCCTTTGTCCTCAAGGAGCAGGACACATGTCATTTCTCTCTTTTCCTTTGTCT
1 CATTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACACATTTCATTTC-CTCTTTTCCTTTGTCC
* * * ** * * * * *
90050 TCAAAGAGCATG--ACATA-C-TTTATTTTCTTTTCTCCTTTATCCTTAATGAGCAAGGCGCACT
65 TCAAAAAGTAGGACACATATCATTT-CCTTCTTTTC-CCTTTGTCCTAAAAGAGCAAGACACACT
* *
90111 TCATTTCCTTTTTTCCTTTGTCCTC
128 TCATTTCCTTTTCTACTTTGTCCTC
90136 GAAAAGTAGG
Statistics
Matches: 271, Mismatches: 37, Indels: 27
0.81 0.11 0.08
Matches are distributed among these distances:
161 3 0.01
162 9 0.03
163 49 0.18
165 62 0.23
166 3 0.01
168 1 0.00
169 29 0.11
170 4 0.01
171 29 0.11
172 3 0.01
173 74 0.27
174 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (165 bp):
CATTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACACATTTCATTTCCTCTTTTCCTTTGTCCT
CAAAAAGTAGGACACATATCATTTCCTTCTTTTCCCTTTGTCCTAAAAGAGCAAGACACACTTCA
TTTCCTTTTCTACTTTGTCCTCAAAGAGCAAGATA
Found at i:90059 original size:43 final size:41
Alignment explanation
Indices: 89648--90135 Score: 388
Period size: 44 Copynumber: 11.6 Consensus size: 41
89638 AGAGTAGGAC
*
89648 TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAGG--GCA-
1 TCATTTCC-TCTTTT-CCTTTGTCCTCAAAGAGCAGGACACAT
* *
89688 T-ATTTCTTTCTTTTCTCTTTGTCCTCAAAGAGTAGGACACAT
1 TCATTTC-CTCTTTTC-CTTTGTCCTCAAAGAGCAGGACACAT
* *
89730 CTCATTTCCTTCTTTTCCCTTTGTCCTAAAAGAGTAGGACACATT
1 -TCATTTCC-TCTTTT-CCTTTGTCCTCAAAGAGCAGGACACA-T
* *
89775 TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAAGACATACT
1 TCATTTCC-TCTTTT-CCTTTGTCCTCAAAGAGCAGGACACA-T
* * * *
89819 TTATTTCCTTTTTTCTTTTGTCCTCAAAGAGCAGCACACATT
1 TCATTTCCTCTTTTCCTTTGTCCTCAAAGAGCAGGACACA-T
* * *
89861 TCATTTCCTCATTTTCCTTTATCCTCAAAAAGTAGGACACAT
1 TCATTTCCTC-TTTTCCTTTGTCCTCAAAGAGCAGGACACAT
* *
89903 ATCATTTCCTTCTTTTCCCTTTGTCTTCAAAGAGCAAGACACACT
1 -TCATTTCC-TCTTTT-CCTTTGTCCTCAAAGAGCAGGACACA-T
* * *
89948 TGATTTCCT-TTTCTACTTTGTCCTCAAAGAGCATG----AT
1 TCATTTCCTCTTT-TCCTTTGTCCTCAAAGAGCAGGACACAT
* * *
89985 GC-TTTCCTTTTTTCCTTTGTCCTCAAGGAGCAGGACACAT
1 TCATTTCCTCTTTTCCTTTGTCCTCAAAGAGCAGGACACAT
* * *
90025 GTCATTTCTCTCTTTTCCTTTGTCTTCAAAGAGCATGACATACT
1 -TCATTTC-CTCTTTTCCTTTGTCCTCAAAGAGCAGGACACA-T
* * * * * *
90069 TTATTTTCT-TTTCTCCTTTATCCTTAATGAGCAAGG-CGCACT
1 TCATTTCCTCTTT-TCCTTTGTCCTCAAAGAGC-AGGACACA-T
*
90111 TCATTTCCTTTTTTCCTTTGTCCTC
1 TCATTTCCTCTTTTCCTTTGTCCTC
90136 GAAAAGTAGG
Statistics
Matches: 363, Mismatches: 57, Indels: 54
0.77 0.12 0.11
Matches are distributed among these distances:
36 25 0.07
37 4 0.01
38 2 0.01
39 30 0.08
40 3 0.01
41 6 0.02
42 95 0.26
43 83 0.23
44 112 0.31
45 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (41 bp):
TCATTTCCTCTTTTCCTTTGTCCTCAAAGAGCAGGACACAT
Found at i:90076 original size:78 final size:77
Alignment explanation
Indices: 89910--90085 Score: 169
Period size: 78 Copynumber: 2.2 Consensus size: 77
89900 CATATCATTT
* *
89910 CCTTCTTTTCCCTTTGTCTTCAAAGAGCAAGACACACTTGATTTCCTTTTCTACTTTGTCCTCAA
1 CCTT-TTTT-CCTTTGTCCTCAAAGAGCAAGACACACTTCATTTCCTTTTCTACTTTGTCCTCAA
* *
89975 AGAGCATGATGCTTT
64 AGAGCATGA-GCATA
* * * *
89990 CCTTTTTTCCTTTGTCCTCAAGGAGCAGGACACA-TGTCATTTCTCTCTTT-TCCTTTGTCTTCA
1 CCTTTTTTCCTTTGTCCTCAAAGAGCAAGACACACT-TCATTTC-CT-TTTCTACTTTGTCCTCA
90053 AAGAGCATGA-CATA
63 AAGAGCATGAGCATA
* * *
90067 CTTTATTTTCTTTTCTCCT
1 CCTT-TTTTCCTTTGTCCT
90086 TTATCCTTAA
Statistics
Matches: 81, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
77 6 0.07
78 41 0.51
79 27 0.33
80 7 0.09
ACGTcount: A:0.19, C:0.26, G:0.12, T:0.43
Consensus pattern (77 bp):
CCTTTTTTCCTTTGTCCTCAAAGAGCAAGACACACTTCATTTCCTTTTCTACTTTGTCCTCAAAG
AGCATGAGCATA
Found at i:90942 original size:50 final size:50
Alignment explanation
Indices: 90861--90975 Score: 167
Period size: 50 Copynumber: 2.3 Consensus size: 50
90851 TTCCACAATT
* * * * *
90861 TGTAACGATACATTCTTCATTATATCGATACATTCTGGGTTTTACCTAGA
1 TGTATCGATACATTTTTCATTATATCAATACATTCTGGGTTTTACCCAAA
*
90911 TGTATCGATACATTTTTCATTGTATCAATACATTCTGGGTTTTACCCAAA
1 TGTATCGATACATTTTTCATTATATCAATACATTCTGGGTTTTACCCAAA
*
90961 TGTATTGATACATTT
1 TGTATCGATACATTT
90976 CTTAATGTAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 58 1.00
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.43
Consensus pattern (50 bp):
TGTATCGATACATTTTTCATTATATCAATACATTCTGGGTTTTACCCAAA
Found at i:90985 original size:50 final size:50
Alignment explanation
Indices: 90861--90991 Score: 165
Period size: 50 Copynumber: 2.6 Consensus size: 50
90851 TTCCACAATT
* * * * * *
90861 TGTAACGATACATTCTTCATTATATCGATACATTCTGGGTTTTACCTAGA
1 TGTATCGATACATTTTTCAATGTATCGATACATTCTGGGTTTTACCCAAA
* *
90911 TGTATCGATACATTTTTCATTGTATCAATACATTCTGGGTTTTACCCAAA
1 TGTATCGATACATTTTTCAATGTATCGATACATTCTGGGTTTTACCCAAA
*
90961 TGTATTGATACATTTCTT-AATGTATCGATAC
1 TGTATCGATACATTT-TTCAATGTATCGATAC
90992 TTTCAGGCAT
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
50 69 0.97
51 2 0.03
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (50 bp):
TGTATCGATACATTTTTCAATGTATCGATACATTCTGGGTTTTACCCAAA
Found at i:93937 original size:316 final size:315
Alignment explanation
Indices: 93331--93976 Score: 766
Period size: 316 Copynumber: 2.0 Consensus size: 315
93321 TAAAAAATTT
* * *
93331 CAACCCTGGTTTTATTTCTAAAACACTGATTTCCCACAATTGAGAATACTCCAACCCCATTTCTT
1 CAACCCTGTTTTTATTTCTAAAACACCGATTTCCCACAATCGAGAATACTCCAACCCCATTTCTT
* * ** * * * * *
93396 CTGAGGGGATATGCCAACCCTTATTTTATTTTTAAAACACTGATTTTCCACCATCGAGGATATTT
66 CTAAGAGGATATGCCAACCCCGATTTTATTTTTAAAACACCGATTTTCCACAATCAAGGATACTC
* ** * * *
93461 CAACCCTGTTATTTTTAAGTGATACTCCAACCTCGGTTTTATTTCTAAAACATCGATTTTTCACC
131 CAACCCTGTTATTTTTAAGGGATACTCCAACCTCGACTTTATTTCTAAAACATCAATTTTCCACA
** * * *
93526 ATCGGGGATACTCTAACCCCGTTATTTTCGAGAGGATACTCTACCCTCGATTTTATATCTAAAAC
196 ATCAAGGATACTCCAACCCCGTTATTTCCAAGAGGATACTCTACCCTCGATTTTATATCTAAAAC
* ** * * *
93591 ATCAATTTTTCACTATCGTGGATACTCCAACCCCGTTATTTTCGAGGGGATACTC
261 AACAATTTGCCACCATCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTC
** * * *
93646 CAACCCTAGTTTTTATTTCTAAAACACCGATTTTTCACAATCGGGGATACTCCAACCCTATTAT-
1 CAACCCT-GTTTTTATTTCTAAAACACCGATTTCCCACAATCGAGAATACTCCAACCCCATT-TC
* *
93710 TTCTAAGAGGATACT-CCAACCCCGATTTTATTTTTAAAACACCGATTTTTCACAATCAAGGATG
64 TTCTAAGAGGATA-TGCCAACCCCGATTTTATTTTTAAAACACCGATTTTCCACAATCAAGGATA
**
93774 CTCCAA-CCTCGTTATTTTTAAGGGGATACTTTAACC-CTGACTTTATTTCTAAAACATCAATTT
128 CTCCAACCCT-GTTATTTTTAA-GGGATACTCCAACCTC-GACTTTATTTCTAAAACATCAATTT
* * * * *
93837 TCCATAATCAAGGATACTCCAACCTCGTTATTTCCAAG-GGATACTCTA-ACTCCGGTTTTATTT
190 TCCACAATCAAGGATACTCCAACCCCGTTATTTCCAAGAGGATACTCTACCCT-CGATTTTATAT
* *
93900 TTAAAACAACAATTTGCCACCATCGGGGATTCTCCAACCCCATTATTTTCGAGGGGATACTC
254 CTAAAACAACAATTTGCCACCATCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTC
93962 CAATCCC-GTTTTTAT
1 CAA-CCCTGTTTTTAT
93977 CTCCAAAATA
Statistics
Matches: 278, Mismatches: 45, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
315 20 0.07
316 191 0.69
317 67 0.24
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (315 bp):
CAACCCTGTTTTTATTTCTAAAACACCGATTTCCCACAATCGAGAATACTCCAACCCCATTTCTT
CTAAGAGGATATGCCAACCCCGATTTTATTTTTAAAACACCGATTTTCCACAATCAAGGATACTC
CAACCCTGTTATTTTTAAGGGATACTCCAACCTCGACTTTATTTCTAAAACATCAATTTTCCACA
ATCAAGGATACTCCAACCCCGTTATTTCCAAGAGGATACTCTACCCTCGATTTTATATCTAAAAC
AACAATTTGCCACCATCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTC
Found at i:93973 original size:78 final size:79
Alignment explanation
Indices: 93331--93964 Score: 550
Period size: 79 Copynumber: 8.0 Consensus size: 79
93321 TAAAAAATTT
* ** * * * *
93331 CAACCCTGGTTTTATTTCTAAAACA-CTGATTTCCCACAATTGAGAATACTCCAACCCCATT-TC
1 CAACCCTGATTTTATTTCTAAAACATC-GATTTTTCACAATCGAGGATACTCCAACCCCGTTATT
93394 TTCTGAGGGGATA-TGC
65 TTC-GAGGGGATACT-C
* * * * * * *
93410 CAACCCTTATTTTATTTTTAAAACA-CTGATTTTCCACCATCGAGGATATTTCAACCCTGTTATT
1 CAACCCTGATTTTATTTCTAAAACATC-GATTTTTCACAATCGAGGATACTCCAACCCCGTTATT
* * *
93474 TT-TAAGTGATACTC
65 TTCGAGGGGATACTC
* * * *
93488 CAA-CCTCGGTTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCTAACCCCGTTATT
1 CAACCCT-GATTTTATTTCTAAAACATCGATTTTTCACAATCGAGGATACTCCAACCCCGTTATT
*
93552 TTCGAGAGGATACT-
65 TTCGAGGGGATACTC
* * * * *
93566 CTACCCTCGATTTTATATCTAAAACATCAATTTTTCACTATCGTGGATACTCCAACCCCGTTATT
1 CAACCCT-GATTTTATTTCTAAAACATCGATTTTTCACAATCGAGGATACTCCAACCCCGTTATT
93631 TTCGAGGGGATACTC
65 TTCGAGGGGATACTC
* * * **
93646 CAACCCTAGTTTTTATTTCTAAAACACCGATTTTTCACAATCGGGGATACTCCAACCCTATTA-T
1 CAACCCT-GATTTTATTTCTAAAACATCGATTTTTCACAATCGAGGATACTCCAACCCCGTTATT
* *
93710 TTCTAAGAGGATACTC
65 TTC-GAGGGGATACTC
* * * * * *
93726 CAACCCCGATTTTATTTTTAAAACACCGATTTTTCACAATCAAGGATGCTCCAACCTCGTTATTT
1 CAACCCTGATTTTATTTCTAAAACATCGATTTTTCACAATCGAGGATACTCCAACCCCGTTATTT
** *
93791 TTAAGGGGATACTT
66 TCGAGGGGATACTC
* * * * * * *
93805 TAACCCTGACTTTATTTCTAAAACATCAATTTTCCATAATCAAGGATACTCCAACCTCGTTA-TT
1 CAACCCTGATTTTATTTCTAAAACATCGATTTTTCACAATCGAGGATACTCCAACCCCGTTATTT
* *
93869 TCCAAGGGATACTC
66 TCGAGGGGATACTC
* * * * * ** * * * *
93883 TAACTCC-GGTTTTATTTTTAAAACAACAATTTGCCACCATCGGGGATTCTCCAACCCCATTATT
1 CAAC-CCTGATTTTATTTCTAAAACATCGATTTTTCACAATCGAGGATACTCCAACCCCGTTATT
93947 TTCGAGGGGATACTC
65 TTCGAGGGGATACTC
93962 CAA
1 CAA
93965 TCCCGTTTTT
Statistics
Matches: 456, Mismatches: 88, Indels: 22
0.81 0.16 0.04
Matches are distributed among these distances:
77 3 0.01
78 119 0.26
79 259 0.57
80 75 0.16
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (79 bp):
CAACCCTGATTTTATTTCTAAAACATCGATTTTTCACAATCGAGGATACTCCAACCCCGTTATTT
TCGAGGGGATACTC
Found at i:100478 original size:3 final size:3
Alignment explanation
Indices: 100437--100493 Score: 59
Period size: 3 Copynumber: 20.3 Consensus size: 3
100427 TTGGTTTATT
* * *
100437 TAA TAA -AA -AA TAA AAA TAA AAA TAA -AA TAG TAA -AA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
100481 TAA TAA TAA TAA T
1 TAA TAA TAA TAA T
100494 TAAAAAAAAG
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
2 8 0.18
3 37 0.82
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (3 bp):
TAA
Found at i:101423 original size:13 final size:13
Alignment explanation
Indices: 101405--101434 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
101395 ACTTTTCACT
101405 ATGTATCGATACA
1 ATGTATCGATACA
101418 ATGTATCGATACA
1 ATGTATCGATACA
101431 ATGT
1 ATGT
101435 CCCATGTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:102209 original size:18 final size:16
Alignment explanation
Indices: 102159--102205 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 16
102149 TCCCCTTCAA
102159 TTAAAAATTTTCTCCCT
1 TTAAAAA-TTTCTCCCT
102176 TAATAAAAATTT-TCCCT
1 T--TAAAAATTTCTCCCT
*
102193 TTAAAAATATCTC
1 TTAAAAATTTCTC
102206 TCCCGCTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
15 8 0.31
16 2 0.08
17 7 0.27
18 3 0.12
19 6 0.23
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.43
Consensus pattern (16 bp):
TTAAAAATTTCTCCCT
Found at i:102258 original size:43 final size:43
Alignment explanation
Indices: 102192--102307 Score: 164
Period size: 43 Copynumber: 2.7 Consensus size: 43
102182 AAATTTTCCC
102192 TTTA-AAAAT-ATCTCTCCCGCTTTTTGTTTCCAAAATAATCTCT
1 TTTATAAAATAATCTC-CCC-CTTTTTGTTTCCAAAATAATCTCT
102235 TTTATAAAATAATCTCCCCCTTTTTGTTTCCAAAATAATCTCT
1 TTTATAAAATAATCTCCCCCTTTTTGTTTCCAAAATAATCTCT
* * * *
102278 TTTATAAAACAATCTGCCCTTTTTTTTTTC
1 TTTATAAAATAATCTCCCCCTTTTTGTTTC
102308 AAATTTATTT
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
43 54 0.81
44 8 0.12
45 5 0.07
ACGTcount: A:0.28, C:0.22, G:0.03, T:0.47
Consensus pattern (43 bp):
TTTATAAAATAATCTCCCCCTTTTTGTTTCCAAAATAATCTCT
Found at i:107265 original size:19 final size:20
Alignment explanation
Indices: 107241--107302 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 20
107231 TTTTGAATTT
107241 CAAACAG-TTTGTATCGATA
1 CAAACAGATTTGTATCGATA
**
107260 CAAACAGAAAATGTATCGATA
1 CAAACAG-ATTTGTATCGATA
* * *
107281 CATA-AGTTTTGTATCAATA
1 CAAACAGATTTGTATCGATA
107300 CAA
1 CAA
107303 TGTATCGCTA
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
19 18 0.55
20 2 0.06
21 13 0.39
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.29
Consensus pattern (20 bp):
CAAACAGATTTGTATCGATA
Found at i:107352 original size:21 final size:21
Alignment explanation
Indices: 107326--107367 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
107316 AGCTACTGCC
107326 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
107347 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
107368 CAGGCATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.29
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:109379 original size:52 final size:51
Alignment explanation
Indices: 109245--109413 Score: 223
Period size: 52 Copynumber: 3.3 Consensus size: 51
109235 TCTCATAATT
* *
109245 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACTAATTTTCCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTTCCACAATC
* * **
109296 GGAGATACTCC-ACCCCGATTTTATTTTCAAAACACTAATTTTCCTTTAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTTCC-ACAATC
* * *
109347 GGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCC-AAAACACTAATTTTCCACAATC
*
109399 GAGGATACTCCAACC
1 GGGGATACTCCAACC
109414 TCGTTATTTC
Statistics
Matches: 100, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
50 30 0.30
51 24 0.24
52 32 0.32
53 14 0.14
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTTCCACAATC
Found at i:109558 original size:79 final size:79
Alignment explanation
Indices: 109427--109629 Score: 228
Period size: 79 Copynumber: 2.6 Consensus size: 79
109417 TTATTTCATC
** * * * *
109427 GGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAGCCCCGGCTTTATTCCCAAAAT-ATT
1 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCC-AAATCATC
* **
109491 GATTTCTCATAATTG
65 GATTTCTCACAACCG
* ** * * *
109506 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCTAATTCCGATTTTATTTCCTAATCATCG
1 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAATCATCG
*
109571 ATTTTTCACAACCG
66 ATTTCTCACAACCG
* *
109585 GGGATACTCCAACCCTGTTATTTTCAAGGGGATACTCCAACCCCG
1 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG
109630 TTATTATCTC
Statistics
Matches: 102, Mismatches: 21, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
78 3 0.03
79 99 0.97
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (79 bp):
GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAATCATCG
ATTTCTCACAACCG
Found at i:111514 original size:29 final size:29
Alignment explanation
Indices: 111443--111514 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 29
111433 GAAAAAAAAG
* ** *
111443 AAATGAAAGCAATTGAAACTGCTACAAGC
1 AAATGAATGCAATCAAAACTGCTACAAAC
* *
111472 AAATGAAAT-TAATCAAAACTGCTATAAAC
1 AAATG-AATGCAATCAAAACTGCTACAAAC
111501 AAATGAATGCAATC
1 AAATGAATGCAATC
111515 GAGATAGCAG
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
28 3 0.09
29 29 0.85
30 2 0.06
ACGTcount: A:0.51, C:0.15, G:0.12, T:0.21
Consensus pattern (29 bp):
AAATGAATGCAATCAAAACTGCTACAAAC
Found at i:111595 original size:17 final size:18
Alignment explanation
Indices: 111573--111606 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
111563 AAATGAGGAG
111573 AAAAGAAAGAA-AAAAGA
1 AAAAGAAAGAACAAAAGA
*
111590 AAAAGATAGAACAAAAG
1 AAAAGAAAGAACAAAAG
111607 GAAGAACAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (18 bp):
AAAAGAAAGAACAAAAGA
Found at i:111866 original size:23 final size:23
Alignment explanation
Indices: 111812--111883 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
111802 GTAAAACTAG
*
111812 CAAAAACATCAAG-AAATACC-A
1 CAAAAACAGCAAGCAAATACCAA
*
111833 TAAAAACAGCAAGCAAATACCAA
1 CAAAAACAGCAAGCAAATACCAA
* * *
111856 CAAAAATAGCAAGCAAACACCAG
1 CAAAAACAGCAAGCAAATACCAA
111879 CAAAA
1 CAAAA
111884 TAGTAATCAA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
21 11 0.26
22 7 0.16
23 25 0.58
ACGTcount: A:0.61, C:0.24, G:0.08, T:0.07
Consensus pattern (23 bp):
CAAAAACAGCAAGCAAATACCAA
Found at i:124408 original size:165 final size:166
Alignment explanation
Indices: 123953--124892 Score: 866
Period size: 165 Copynumber: 5.8 Consensus size: 166
123943 TCAAAAAAAA
* * * *
123953 TTTTATTTCATGAGTTTTT-A-TTTTTT-TTCAAATCT-TCCTATCTTT-GAAATACGAACTTTG
1 TTTTATTTCATGAGTTTTTCATTTTTTTCTTGAAATCTCT-CTAT-TTTCAAAATACGGAGTTTG
*
124013 CTAC-CCTATAAATGTTTTT-GGGGGAGTTTTTTCA--GTTTAAAATTTTTAATATTCATCAAAT
64 CTACTCC-ATAAATGTTTTTCGAGGGA--TTTTTCACGGTTTAAAATTTTTAATATTCATCAAAT
* * *
124074 ATCATCATTTAATTTATAATAAATCAATTTTGAAAATTTCC
126 ATCATCATTTAATTCATAATAAATCAATTTTGAAAAATTCT
* * * * **
124115 TTTTATTTCATGAG----T--TTTTTTTCTTGGAA-CCCCCTCATTTTCGAAATACGGAACTTGC
1 TTTTATTTCATGAGTTTTTCATTTTTTTCTTGAAATCTCTCT-ATTTTCAAAATACGGAGTTTGC
* *
124173 TACTTCATAAATG-TTTTCG-GGGAGTTTTCTA-GGTTTAAAATTTTTAATATTCATCAAATATC
65 TACTCCATAAATGTTTTTCGAGGGATTTTTC-ACGGTTTAAAATTTTTAATATTCATCAAATATC
* * *
124235 ATCATTTAATTTATAATAAATCAGTTTTGAAAAGTTCT
129 ATCATTTAATTCATAATAAATCAATTTTGAAAAATTCT
* *
124273 TTTTATTTCATGAGTTTTTCATTTTTTTCTTAAAATCTCTCTATTTTCAAAATATGGAGTTTGCT
1 TTTTATTTCATGAGTTTTTCATTTTTTTCTTGAAATCTCTCTATTTTCAAAATACGGAGTTTGCT
* *
124338 ACTCCATAAATGTTTTTAGAGGG-TTTTTCACGGTTTAAAATTTTTAATATTCATCAAATATCAC
66 ACTCCATAAATGTTTTTCGAGGGATTTTTCACGGTTTAAAATTTTTAATATTCATCAAATATCAT
*
124402 CATTTAATTCATAATAAATCAGTTTTGAAAAATTCT
131 CATTTAATTCATAATAAATCAATTTTGAAAAATTCT
* * **
124438 TTTTATTTCATAAGTTTTTCATTTTTTTCTTGAAATCTCCCTATTTTTGAAATACGGAGTTTGCT
1 TTTTATTTCATGAGTTTTTCATTTTTTTCTTGAAATCTCTCTATTTTCAAAATACGGAGTTTGCT
* * * * * * *
124503 ACTCCGTAAAT-ATTTTCGAGGAAAATTTTCTCAGTTTAAAATTTTTAATATTCATCGAATATCA
66 ACTCCATAAATGTTTTTCGAGG-GATTTTTCACGGTTTAAAATTTTTAATATTCATCAAATATCA
* * * *
124567 TCATTTAATTCGTACTAAATTATTTTTGAAAAATTC-
130 TCATTTAATTCATAATAAATCAATTTTGAAAAATTCT
* * * * * * * * * ** *
124603 ATTTATTTTCTTGAGTTTTCCATTTTTTCCTTTAAGTCCCT-TGTTTCCGAAAA-ACTAAGTTTT
1 TTTTA-TTTCATGAGTTTTTCATTTTTTTCTTGAAATCTCTCTATTTTC-AAAATACGGAGTTTG
* * * * * *
124666 CTACTCCTTGAAT-ATTTTCAGAGAGG--TTTTCTCGGTTTAAAATTTTTACTATTCACCAAATA
64 CTACTCCATAAATGTTTTTC-GAG-GGATTTTTCACGGTTTAAAATTTTTAATATTCATCAAATA
*
124728 TCATCATTTAATTCATAATAAATCAATTTTGAAAAATTAAT
127 TCATCATTTAATTCATAATAAATCAATTTTGAAAAATT-CT
* * * * * * *
124769 TTGT-TTTCCTAAGTTTTTCATTTTTTCCTTGAAATCTCT-T-GTTTCTAAAA-AGCTGAGTTTT
1 TTTTATTTCATGAGTTTTTCATTTTTTTCTTGAAATCTCTCTATTTTC-AAAATA-CGGAGTTTG
* * **
124830 CTACTCCGTAAATG-TTTTCGAGGGGATTTTTCTCAATTTTAAAATTTTTGAA-ATTCATCAAAT
64 CTACTCCATAAATGTTTTTCGA-GGGATTTTTCAC-GGTTTAAAATTTTT-AATATTCATCAAAT
124893 GTTGTATTAA
Statistics
Matches: 653, Mismatches: 91, Indels: 64
0.81 0.11 0.08
Matches are distributed among these distances:
156 5 0.01
157 1 0.00
158 100 0.15
159 30 0.05
160 1 0.00
162 15 0.02
163 12 0.02
164 172 0.26
165 188 0.29
166 127 0.19
167 2 0.00
ACGTcount: A:0.29, C:0.14, G:0.10, T:0.47
Consensus pattern (166 bp):
TTTTATTTCATGAGTTTTTCATTTTTTTCTTGAAATCTCTCTATTTTCAAAATACGGAGTTTGCT
ACTCCATAAATGTTTTTCGAGGGATTTTTCACGGTTTAAAATTTTTAATATTCATCAAATATCAT
CATTTAATTCATAATAAATCAATTTTGAAAAATTCT
Found at i:124743 original size:330 final size:329
Alignment explanation
Indices: 124038--124892 Score: 979
Period size: 330 Copynumber: 2.6 Consensus size: 329
124028 TTTTGGGGGA
* * *
124038 GTTTTTTCAGTTTAAAATTTTTAATATTCATCAAATATCATCATTTAATTTATAATAAATCAATT
1 GTTTTCTCGGTTTAAAATTTTTAATATTCATCAAATATCATCATTTAATTCATAATAAATCAATT
* * * * * *
124103 TTGAAAATTTCCTTTTATTTCATGAG----T--TTTTTTTCTTGGAA-CCCCCTCATTTTCGAAA
66 TTGAAAAATTCTTTTTATTTCATAAGTTTTTCATTTTTTTCTTGAAATCTCCCT-ATTTTTGAAA
** * * *
124161 TACGGAACTTGCTACTTCATAAATGTTTTCG-GGGAGTTTTCT-AGGTTTAAAATTTTTAATATT
130 TACGGAGTTTGCTACTCCGTAAATGTTTTCGAGGGAATTTTCTCA-GTTTAAAATTTTTAATATT
* * *
124224 CATCAAATATCATCATTTAATTTATAATAAATCAGTTTTGAAAAGTTCTTTTTATTTCATGAGTT
194 CATCAAATATCATCATTTAATTCATAATAAATCAGTTTTGAAAAATTCTTTATATTTCATGAGTT
* * * * * *
124289 TTTCATTTTTTTCTTAAAATCTCTCTATTTTCAAAATATGGAGTTTGCTACTCCATAAATGTTTT
259 TTCCATTTTTTCCTTAAAATCCCTCTATTTCCAAAATATGAAGTTTGCTACTCCATAAATATTTT
*
124354 TAGAGG
324 CAGAGG
* * *
124360 GTTTTTCACGGTTTAAAATTTTTAATATTCATCAAATATCACCATTTAATTCATAATAAATCAGT
1 G-TTTTCTCGGTTTAAAATTTTTAATATTCATCAAATATCATCATTTAATTCATAATAAATCAAT
124425 TTTGAAAAATTCTTTTTATTTCATAAGTTTTTCATTTTTTTCTTGAAATCTCCCTATTTTTGAAA
65 TTTGAAAAATTCTTTTTATTTCATAAGTTTTTCATTTTTTTCTTGAAATCTCCCTATTTTTGAAA
* *
124490 TACGGAGTTTGCTACTCCGTAAATATTTTCGAGGAAAATTTTCTCAGTTTAAAATTTTTAATATT
130 TACGGAGTTTGCTACTCCGTAAATGTTTTCGAGG-GAATTTTCTCAGTTTAAAATTTTTAATATT
* * * * * *
124555 CATCGAATATCATCATTTAATTCGTACTAAATTATTTTTGAAAAATTCATTTAT-TTTCTTGAGT
194 CATCAAATATCATCATTTAATTCATAATAAATCAGTTTTGAAAAATTC-TTTATATTTCATGAGT
* * * * * *
124619 TTTCCATTTTTTCCTTTAAGTCCCT-TGTTTCCGAAAA-ACT-AAGTTTTCTACTCCTTGAATAT
258 TTTCCATTTTTTCCTTAAAATCCCTCTATTTCC-AAAATA-TGAAGTTTGCTACTCCATAAATAT
124681 TTTCAGAGAG
321 TTTCAGAG-G
* *
124691 GTTTTCTCGGTTTAAAATTTTTACTATTCACCAAATATCATCATTTAATTCATAATAAATCAATT
1 GTTTTCTCGGTTTAAAATTTTTAATATTCATCAAATATCATCATTTAATTCATAATAAATCAATT
* * * * * * *
124756 TTGAAAAATTAATTTGT-TTTCCTAAGTTTTTCATTTTTTCCTTGAAATCT-CTTGTTTCT-AAA
66 TTGAAAAATT-CTTTTTATTTCATAAGTTTTTCATTTTTTTCTTGAAATCTCCCTATTTTTGAAA
* * * * *
124818 AAGCTGAGTTTTCTACTCCGTAAATGTTTTCGAGGGGATTTTTCTCAATTTTAAAATTTTTGAA-
130 TA-CGGAGTTTGCTACTCCGTAAATGTTTTCGA-GGGAATTTTCTC-AGTTTAAAATTTTT-AAT
124882 ATTCATCAAAT
191 ATTCATCAAAT
124893 GTTGTATTAA
Statistics
Matches: 452, Mismatches: 61, Indels: 32
0.83 0.11 0.06
Matches are distributed among these distances:
322 1 0.00
323 81 0.18
327 1 0.00
328 4 0.01
329 89 0.20
330 162 0.36
331 109 0.24
332 5 0.01
ACGTcount: A:0.30, C:0.14, G:0.09, T:0.47
Consensus pattern (329 bp):
GTTTTCTCGGTTTAAAATTTTTAATATTCATCAAATATCATCATTTAATTCATAATAAATCAATT
TTGAAAAATTCTTTTTATTTCATAAGTTTTTCATTTTTTTCTTGAAATCTCCCTATTTTTGAAAT
ACGGAGTTTGCTACTCCGTAAATGTTTTCGAGGGAATTTTCTCAGTTTAAAATTTTTAATATTCA
TCAAATATCATCATTTAATTCATAATAAATCAGTTTTGAAAAATTCTTTATATTTCATGAGTTTT
CCATTTTTTCCTTAAAATCCCTCTATTTCCAAAATATGAAGTTTGCTACTCCATAAATATTTTCA
GAGG
Found at i:125296 original size:6 final size:6
Alignment explanation
Indices: 125287--125319 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
125277 AATAACATAA
*
125287 AAAATG AAAATG AAAATG AAAAAG -AAATG AAAA
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAA
125320 CCTTGGAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.73, C:0.00, G:0.15, T:0.12
Consensus pattern (6 bp):
AAAATG
Found at i:127263 original size:157 final size:155
Alignment explanation
Indices: 127022--128046 Score: 799
Period size: 156 Copynumber: 6.6 Consensus size: 155
127012 AGTATATACA
* * * * * *
127022 TATTTTTGTAATTTTCTA-TATACGAGTCCTAGGTTGTCACTAAGATGCTTTTATGTCGAAGGT-
1 TATTTTTGTAATTTTTTAGAAT-CGAGTCCTAGGTTGTCACCAGGATGCTTTTATGCCAAAGGTG
*
127085 AGGTATTTAGGATAGGTTCATCCTATCTTTAATTTTTTTTCTTATCCTTTAGGGTTAGCAGGATA
65 A-GTATTTAGGATAGGTTCATCCTATCTATAATTTTTTTTCTTATCCTTTAGGGTTA-CAGGATA
* * *
127150 CTTTTATATCGAAGGTATACCCTAGGAG
128 CTTTCATGTCGAAGGTATACCCTAGGGG
* * * * * * *
127178 AATTTTTGTAATTTTTTTAGAA-CTAAGTCCTAAGATGTTATCAGGATGCTTTTATGCCAAATGT
1 TATTTTTGTAA-TTTTTTAGAATC-GAGTCCTAGGTTGTCACCAGGATGCTTTTATGCCAAAGGT
* * * * *
127242 GAGTATTTAGGATAGGTTCATCCTATTACTTATCATTTTAGTGTC-TA--C--TAAGGTTACCGG
64 GAGTATTTAGGATAGGTTCATCCTA-T-C-TATAATTTT-TTTTCTTATCCTTTAGGGTTA-CAG
* **
127302 GATACTTTCATGTTGAAGGTATACTTATAGGGG
124 GATACTTTCATGTCGAAGGTATAC-CCTAGGGG
* * * * * ** ** *
127335 TATTTATGTAATTTTTTAAAATCGAGTCCTACGTCGTCATCAAGTTTGCTTTTATGCTGAAGATT
1 TATTTTTGTAATTTTTTAGAATCGAGTCCTAGGTTGTCA-CCAGGATGCTTTTATGCCAAAG-GT
* * * * * **
127400 G-GTACTTAGGATAGGTTCATCCCATCTATAA-TTTTTTACTTGTCCTTTAGGATTATTGAGATA
64 GAGTATTTAGGATAGGTTCATCCTATCTATAATTTTTTTTCTTATCCTTTAGGGTTACAG-GATA
*
127463 CTTTCATGTTGAAGGTATACCCTAGGGG
128 CTTTCATGTCGAAGGTATACCCTAGGGG
* * * * * * * *
127491 TACTTTCGTAATTTTATAGAATCGAGTCCTACGCTGTCACCATGATGCTTTTATACCAAAGGTGG
1 TATTTTTGTAATTTTTTAGAATCGAGTCCTAGGTTGTCACCAGGATGCTTTTATGCCAAAGGTGA
* * * * * *
127556 GTATTTAAGATAGGTTCATCCCATCTATAATATTTTTTCTTGTCCTTTAGGATTACCGAGATACT
66 GTATTTAGGATAGGTTCATCCTATCTATAATTTTTTTTCTTATCCTTTAGGGTTACAG-GATACT
*
127621 TTCATGTCGAAGGTATACCCTAAGGG
130 TTCATGTCGAAGGTATACCCTAGGGG
* * *** *
127647 CATTTTTATAATTTTTCTAGAATCGAGTCCTAGGTTGTCATTGGGATGCTTTTATGCC-AAGATG
1 TATTTTTGTAATTTTT-TAGAATCGAGTCCTAGGTTGTCACCAGGATGCTTTTATGCCAAAGGTG
* * * * ** ** * *
127711 -GTTATTTAGGAGAAGTTTATCCTAT-TACTTA-TCATTTTAGTGT-CTATTAAGGTTACCAGGA
65 AG-TATTTAGGATAGGTTCATCCTATCTA-TAATTTTTTTTCTTATCCT-TTAGGGTTA-CAGGA
* *
127772 TACTTTAATGTCAAAGGTATA-CCTAGAAGGG
126 TACTTTCATGTCGAAGGTATACCCTAG--GGG
* ** ** **
127803 TATTTTCT-TAATTTTTTGGAATTAAGTCCTAGGTTGTCACCAAGTTTGCTTTTATGCTGAAGGT
1 TATTTT-TGTAATTTTTTAGAATCGAGTCCTAGGTTGTCACC-AGGATGCTTTTATGCCAAAGGT
* * * * * *
127867 GGGTATTTAAGATAGGTTCATCCTATATATAATCTTTTTTCTTGTCTTTTAGGGTTACTA-GATA
64 GAGTATTTAGGATAGGTTCATCCTATCTATAATTTTTTTTCTTATCCTTTAGGGTTAC-AGGATA
* * * *
127931 CTTTCATTTTGAAGGTATATCCTAGAGG
128 CTTTCATGTCGAAGGTATACCCTAGGGG
* * * * * *
127959 CATTTTTGTACTTTTCCTAGAATCGAGTCTTAGGTTGTCACCGGGATGCTTTAATGCCAAAGGTG
1 TATTTTTGTAATTTT-TTAGAATCGAGTCCTAGGTTGTCACCAGGATGCTTTTATGCCAAAGGTG
128024 AGTATTTAGGATAGGTTCATCCT
65 AGTATTTAGGATAGGTTCATCCT
128047 TGAAAGCTTA
Statistics
Matches: 680, Mismatches: 151, Indels: 76
0.75 0.17 0.08
Matches are distributed among these distances:
152 2 0.00
153 4 0.01
154 12 0.02
155 104 0.15
156 272 0.40
157 242 0.36
158 30 0.04
159 2 0.00
160 9 0.01
161 3 0.00
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.41
Consensus pattern (155 bp):
TATTTTTGTAATTTTTTAGAATCGAGTCCTAGGTTGTCACCAGGATGCTTTTATGCCAAAGGTGA
GTATTTAGGATAGGTTCATCCTATCTATAATTTTTTTTCTTATCCTTTAGGGTTACAGGATACTT
TCATGTCGAAGGTATACCCTAGGGG
Found at i:128833 original size:13 final size:13
Alignment explanation
Indices: 128815--128840 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
128805 CATTTTGTGG
128815 TGTATCGATACAT
1 TGTATCGATACAT
128828 TGTATCGATACAT
1 TGTATCGATACAT
128841 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:128837 original size:33 final size:32
Alignment explanation
Indices: 128795--128858 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
128785 TACAAGCTAA
*
128795 TGTATCGATACAT-TTTGTGGTGTATCGATACAT
1 TGTATCGATACATACTT-T-GTGTATCGATACAT
128828 TGTATCGATACATACTTTGTGTATCGATACA
1 TGTATCGATACATACTTTGTGTATCGATACA
128859 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 13 0.45
33 14 0.48
34 2 0.07
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATACTTTGTGTATCGATACAT
Found at i:128949 original size:13 final size:13
Alignment explanation
Indices: 128931--128955 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
128921 ACAATGCAAC
128931 ATGTATCGATACA
1 ATGTATCGATACA
128944 ATGTATCGATAC
1 ATGTATCGATAC
128956 TGTGCAACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:128950 original size:33 final size:33
Alignment explanation
Indices: 128913--128978 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
128903 TCTTTTTCAA
128913 GTATCGATACAATGCAACATGTATCGATACAAT
1 GTATCGATACAATGCAACATGTATCGATACAAT
**
128946 GTATCGATACTGTGCAACATGTATCGATACAAT
1 GTATCGATACAATGCAACATGTATCGATACAAT
128979 TAAATGTGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (33 bp):
GTATCGATACAATGCAACATGTATCGATACAAT
Found at i:131404 original size:13 final size:13
Alignment explanation
Indices: 131386--131476 Score: 155
Period size: 13 Copynumber: 7.0 Consensus size: 13
131376 ATAATCCCCT
*
131386 TGTATCGATACAG
1 TGTATCGATACAA
131399 TGTATCGATACAA
1 TGTATCGATACAA
*
131412 TGTATCGATACAG
1 TGTATCGATACAA
131425 TGTATCGATACAA
1 TGTATCGATACAA
*
131438 TGTATCGATACAG
1 TGTATCGATACAA
131451 TGTATCGATACAA
1 TGTATCGATACAA
131464 TGTATCGATACAA
1 TGTATCGATACAA
131477 AGAATTCTGT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 73 1.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:131415 original size:26 final size:26
Alignment explanation
Indices: 131386--131475 Score: 180
Period size: 26 Copynumber: 3.5 Consensus size: 26
131376 ATAATCCCCT
131386 TGTATCGATACAGTGTATCGATACAA
1 TGTATCGATACAGTGTATCGATACAA
131412 TGTATCGATACAGTGTATCGATACAA
1 TGTATCGATACAGTGTATCGATACAA
131438 TGTATCGATACAGTGTATCGATACAA
1 TGTATCGATACAGTGTATCGATACAA
131464 TGTATCGATACA
1 TGTATCGATACA
131476 AAGAATTCTG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 64 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (26 bp):
TGTATCGATACAGTGTATCGATACAA
Found at i:134746 original size:27 final size:24
Alignment explanation
Indices: 134713--134763 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 24
134703 GATTGAAAAC
134713 GGGGTTGGAGTGTTCCCTCGGATGAAT
1 GGGGTTGGAGTG-TCCC-C-GATGAAT
134740 GGGGTTGGAGTGTCCCCGATGAAT
1 GGGGTTGGAGTGTCCCCGATGAAT
134764 AAAATTTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 7 0.29
25 1 0.04
26 4 0.17
27 12 0.50
ACGTcount: A:0.16, C:0.16, G:0.41, T:0.27
Consensus pattern (24 bp):
GGGGTTGGAGTGTCCCCGATGAAT
Found at i:136969 original size:52 final size:52
Alignment explanation
Indices: 136884--137008 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
136874 AAATGAAAAG
* *
136884 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
136936 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
136988 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
137009 AAGATCAGTG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:137021 original size:52 final size:51
Alignment explanation
Indices: 136884--137028 Score: 211
Period size: 52 Copynumber: 2.8 Consensus size: 51
136874 AAATGAAAAG
*
136884 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
* *
136936 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
*
136988 TTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
137029 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
51 2 0.02
52 83 0.98
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAT
Found at i:137035 original size:13 final size:13
Alignment explanation
Indices: 137017--137041 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
137007 CAAAGATCAG
137017 TGTATCGATACAA
1 TGTATCGATACAA
137030 TGTATCGATACA
1 TGTATCGATACA
137042 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:137119 original size:33 final size:33
Alignment explanation
Indices: 137082--137148 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
137072 AGTAGCTTAA
137082 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
137115 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
137148 A
1 A
137149 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:137122 original size:13 final size:13
Alignment explanation
Indices: 137104--137128 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
137094 CAAAAAAATA
137104 TGTATCGATACAT
1 TGTATCGATACAT
137117 TGTATCGATACA
1 TGTATCGATACA
137129 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:141362 original size:32 final size:33
Alignment explanation
Indices: 141304--141365 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
141294 CAAGCTAATG
*
141304 TATCGATACATTTTGTGGTGTATCGATACATTT
1 TATCGATACATCTTGTGGTGTATCGATACATTT
141337 TATCGATACATACTT-T-GTGTATCGATACA
1 TATCGATACAT-CTTGTGGTGTATCGATACA
141366 AGTTTGGCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 13 0.48
33 12 0.44
34 2 0.07
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (33 bp):
TATCGATACATCTTGTGGTGTATCGATACATTT
Found at i:141462 original size:20 final size:20
Alignment explanation
Indices: 141420--141469 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
141410 TCTTTTTCAA
* *
141420 GTATCGATACTATGCAATAT
1 GTATCGATACAATGAAATAT
* *
141440 GTATCGATACAATTAAATGT
1 GTATCGATACAATGAAATAT
*
141460 GTATTGATAC
1 GTATCGATAC
141470 TTTTCAGGGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (20 bp):
GTATCGATACAATGAAATAT
Found at i:145141 original size:21 final size:21
Alignment explanation
Indices: 145111--145160 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 21
145101 TGAAATTTTT
*
145111 AGGGAAAAATATAACAAAAAG
1 AGGGAGAAATATAACAAAAAG
145132 AGGGAG-AA-ATAACAAAAAG
1 AGGGAGAAATATAACAAAAAG
145151 -GAGGAGAAAT
1 AG-GGAGAAAT
145161 TTTTTTCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 1 0.04
19 15 0.60
20 4 0.16
21 5 0.20
ACGTcount: A:0.62, C:0.04, G:0.26, T:0.08
Consensus pattern (21 bp):
AGGGAGAAATATAACAAAAAG
Found at i:145145 original size:19 final size:19
Alignment explanation
Indices: 145121--145160 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
145111 AGGGAAAAAT
145121 ATAACAAAAA-GAGGGAGAA
1 ATAACAAAAAGGA-GGAGAA
145140 ATAACAAAAAGGAGGAGAA
1 ATAACAAAAAGGAGGAGAA
145159 AT
1 AT
145161 TTTTTTCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.62, C:0.05, G:0.25, T:0.07
Consensus pattern (19 bp):
ATAACAAAAAGGAGGAGAA
Found at i:145826 original size:33 final size:33
Alignment explanation
Indices: 145763--145828 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
145753 CATATCTAGA
** * *
145763 TGTATCGATACATTACGCTTTGTATTGATACAT
1 TGTATCGATACATTACGAATTATATCGATACAT
145796 TGTATCGATACATGTAC-AATTATATCGATACAT
1 TGTATCGATACAT-TACGAATTATATCGATACAT
145829 GAAATTGGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 25 0.89
34 3 0.11
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (33 bp):
TGTATCGATACATTACGAATTATATCGATACAT
Found at i:145897 original size:13 final size:13
Alignment explanation
Indices: 145879--145903 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
145869 CATGGCACAT
145879 TGTATCGATACAA
1 TGTATCGATACAA
145892 TGTATCGATACA
1 TGTATCGATACA
145904 TGAAGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:146680 original size:20 final size:20
Alignment explanation
Indices: 146655--146708 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
146645 GTTAGAAGTA
* *
146655 ATGTATCGATACAATTTATC
1 ATGTATCGATACAATGTACC
146675 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
146695 ATGTATCGATACAA
1 ATGTATCGATACAA
146709 ATAGTGGTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:146795 original size:13 final size:13
Alignment explanation
Indices: 146777--146802 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
146767 TACAATGATC
146777 ATGTATCGATACA
1 ATGTATCGATACA
146790 ATGTATCGATACA
1 ATGTATCGATACA
146803 TCTGGGTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Done.