Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1920

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4563
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35


Found at i:4258 original size:4 final size:4

Alignment explanation


    Indices: 4249--4283  Score: 70
    Period size: 4  Copynumber: 8.8  Consensus size: 4

       4239 ATCTTACAAA

                                                       
       4249 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
          1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA

       4284 TATATATTAT


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   31  1.00

ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26


Consensus pattern (4 bp):   
ATAC

Found at i:4288 original size:2 final size:2

Alignment explanation


    Indices: 4281--4330  Score: 77
    Period size: 2  Copynumber: 25.5  Consensus size: 2

       4271 ACATACATAC

                                                                           
       4281 AT AT AT AT AT -T AT AT AT -T AT AT AT AGT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT

                         
       4322 AT AT AT AT A
          1 AT AT AT AT A

       4331 GGAGTTTGGT


Statistics
Matches: 45,  Mismatches: 0, Indels: 6
        0.88            0.00        0.12

Matches are distributed among these distances:
   1    2  0.04
   2   41  0.91
   3    2  0.04

ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50


Consensus pattern (2 bp):   
AT

Done.