Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1923
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65456
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Found at i:3552 original size:5 final size:5
Alignment explanation
Indices: 3539--3587 Score: 62
Period size: 5 Copynumber: 9.8 Consensus size: 5
3529 TTTTACACCA
* * * *
3539 AAAAA AAAAC AAAAA AAAAC AAAAC AAAAC AAAAC AAAAA AAAAG AAAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
3588 AAATAGCAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.88, C:0.10, G:0.02, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:3562 original size:15 final size:14
Alignment explanation
Indices: 3538--3600 Score: 65
Period size: 15 Copynumber: 4.2 Consensus size: 14
3528 CTTTTACACC
3538 AAAAAAAAAACAAA
1 AAAAAAAAAACAAA
3552 AAAAAACAAAACAAA
1 AAAAAA-AAAACAAA
3567 ACAAAACAAAAA-AAA
1 A-AAAA-AAAAACAAA
*
3582 AGAAAAAAATAGCAAA
1 A-AAAAAAA-AACAAA
3598 AAA
1 AAA
3601 TAGAAGGGTC
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
14 9 0.21
15 20 0.48
16 12 0.29
17 1 0.02
ACGTcount: A:0.86, C:0.10, G:0.03, T:0.02
Consensus pattern (14 bp):
AAAAAAAAAACAAA
Found at i:3589 original size:10 final size:10
Alignment explanation
Indices: 3538--3605 Score: 50
Period size: 10 Copynumber: 7.0 Consensus size: 10
3528 CTTTTACACC
3538 AAAAAAA-AA
1 AAAAAAAGAA
*
3547 ACAAAAA-AA
1 AAAAAAAGAA
* *
3556 AACAAAACAA
1 AAAAAAAGAA
* *
3566 AACAAAACAA
1 AAAAAAAGAA
3576 AAAAAAAGAA
1 AAAAAAAGAA
* *
3586 AAAAATAGCA
1 AAAAAAAGAA
*
3596 AAAAATAGAA
1 AAAAAAAGAA
3606 GGGTCTAGAT
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
9 13 0.26
10 37 0.74
ACGTcount: A:0.84, C:0.09, G:0.04, T:0.03
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:3600 original size:1 final size:1
Alignment explanation
Indices: 3538--3590 Score: 52
Period size: 1 Copynumber: 53.0 Consensus size: 1
3528 CTTTTACACC
* * * * * *
3538 AAAAAAAAAACAAAAAAAAACAAAACAAAACAAAACAAAAAAAAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
3591 TAGCAAAAAA
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:4921 original size:28 final size:28
Alignment explanation
Indices: 4820--5803 Score: 1277
Period size: 28 Copynumber: 34.4 Consensus size: 28
4810 AAATGTTCAT
4820 CCCTTTCAAAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
*
4848 CTCCTTTCAAAGCCCACAAATCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
*
4877 CTCTTTTCAAAGCCCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
4906 CCCTTTCAAAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* *
4934 CCCTTTCAAAGCCTACAAATCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* *
4962 TTCTTTTCAAAGCCCACAAGTCAGTGGCA
1 -CCCTTTCAAAGCCCACAAGTCAGTGGCA
4991 CCCTTTCAAAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
5019 CCCTTTCAAAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
*
5047 CTCCTTTCAAAGCCCACAAGTTAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
5076 CCCTTTCAAAG-CCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
5103 CTCCTTTCAAAGCCCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
* *
5132 CTCCTTTCAAATCCCACAAATCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
*
5161 CTCTTTTCAAAGCCCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
* * *
5190 CCCTTTCAAAGTCCACAACTTAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
5218 CCCTTTCAAAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* *
5246 CTCTTTTCAAAGCCCACAAATCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
* * *
5275 CTCTTTTCAAAGCCCACAAGTTAGTGACA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
*
5304 CCCTTTCAAAGCCCACAAGTTAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
*
5332 CCCTTTCAAAGCCCACAAGTTAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
*
5360 CTCCTTTCAAAGCTCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
* * *
5389 TTCTTTTCAAAGCCCACAAATCAGTGGCA
1 -CCCTTTCAAAGCCCACAAGTCAGTGGCA
*
5418 CTCTTTTCAAAGCCCACAAGTCAGTGGCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCA
*
5447 CCCTTTCAAAGCCCACAAGTTAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* *
5475 CCCTTTTAGAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* *
5503 CCTTTTCGAAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
5531 CCATTGCGAAGCCCACAATTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* *
5559 CTCTTTTAAAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* *
5587 CCCTTTTAAAGCCCACACAAGTCAATGGCA
1 CCCTTTCAAAG-CC-CACAAGTCAGTGGCA
* * * *
5617 CTCCTTTTAAAGCTCACGCAAGTTAGTGGTA
1 C-CCTTTCAAAGC-C-CACAAGTCAGTGGCA
*
5648 CCTTTTCAAAGCCCACAAGTCAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* * *
5676 CTCTTTCAAAGCCCACGAGTTAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
* * *
5704 TCCTTTCAAAGCCCACGAGTTAGTGGCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA
**
5732 TTCTTTCAAAGCCCACGCAAGTCAGTGGCA
1 CCCTTTCAAAGCCCA--CAAGTCAGTGGCA
* *
5762 CCCTTTTAAAGCCCATGCAAGTCAATGGCAA
1 CCCTTTCAAAGCCCA--CAAGTCAGTGGC-A
5793 CCCTTTTCAAA
1 CCC-TTTCAAA
5804 TCACCACTAT
Statistics
Matches: 854, Mismatches: 85, Indels: 30
0.88 0.09 0.03
Matches are distributed among these distances:
27 16 0.02
28 438 0.51
29 306 0.36
30 60 0.07
31 28 0.03
32 6 0.01
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.23
Consensus pattern (28 bp):
CCCTTTCAAAGCCCACAAGTCAGTGGCA
Found at i:4967 original size:85 final size:85
Alignment explanation
Indices: 4820--5803 Score: 1307
Period size: 85 Copynumber: 11.4 Consensus size: 85
4810 AAATGTTCAT
*
4820 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAATCAGTGGCACTCTTTTC
1 CCCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
4885 AAAGCCCACAAGTCAGTGGCA
65 AAAGCCCACAAGTCAGTGGCA
* * *
4906 CCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCTACAAATCAGTGGCATTCTTTTCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
4971 AAGCCCACAAGTCAGTGGCA
66 AAGCCCACAAGTCAGTGGCA
*
4991 CCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
*
5056 AAGCCCACAAGTTAGTGGCA
66 AAGCCCACAAGTCAGTGGCA
*
5076 CCCTTTCAAAG-CCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTC
1 CCCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
* *
5140 AAATCCCACAAATCAGTGGCA
65 AAAGCCCACAAGTCAGTGGCA
* * * * *
5161 CTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGTCCACAACTTAGTGGCAC-CCTTTC
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
5225 AAAGCCCACAAGTCAGTGGCA
65 AAAGCCCACAAGTCAGTGGCA
* * * * * *
5246 CTCTTTTCAAAGCCCACAAATCAGTGGCACTCTTTTCAAAGCCCACAAGTTAGTGACAC-CCTTT
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTT
*
5310 CAAAGCCCACAAGTTAGTGGCA
64 CAAAGCCCACAAGTCAGTGGCA
* * *
5332 CCCTTTCAAAGCCCACAAGTTAGTGGCACTCCTTTCAAAGCTCACAAGTCAGTGGCATTCTTTTC
1 CCCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
*
5397 AAAGCCCACAAATCAGTGGCA
65 AAAGCCCACAAGTCAGTGGCA
* * *
5418 CTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTT-
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTC
*
5482 AGAGCCCACAAGTCAGTGGCA
65 AAAGCCCACAAGTCAGTGGCA
* * * * * *
5503 CCTTTTCGAAGCCCACAAGTCAGTGGCACCATTGCGAAGCCCACAATTCAGTGGCACTCTTTT-A
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
5567 AAGCCCACAAGTCAGTGGCA
66 AAGCCCACAAGTCAGTGGCA
* * * * * *
5587 CCCTTTTAAAGCCCACACAAGTCAATGGCACTCCTTTTAAAGCTCACGCAAGTTAGTGGTAC-CT
1 CCCTTTCAAAG-CC-CACAAGTCAGTGGCAC-CCTTTCAAAGC-C-CACAAGTCAGTGGCACTCT
5651 TTTCAAAGCCCACAAGTCAGTGGCA
61 TTTCAAAGCCCACAAGTCAGTGGCA
* * * * * * *
5676 CTCTTTCAAAGCCCACGAGTTAGTGGCATCCTTTCAAAGCCCACGAGTTAGTGGCATTC-TTTCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
5740 AAGCCCACGCAAGTCAGTGGCA
66 AAGCCCA--CAAGTCAGTGGCA
* *
5762 CCCTTTTAAAGCCCATGCAAGTCAATGGCAACCCTTTTCAAA
1 CCCTTTCAAAGCCCA--CAAGTCAGTGGC-ACCC-TTTCAAA
5804 TCACCACTAT
Statistics
Matches: 801, Mismatches: 78, Indels: 34
0.88 0.09 0.04
Matches are distributed among these distances:
84 124 0.15
85 326 0.41
86 220 0.27
87 62 0.08
88 17 0.02
89 45 0.06
90 7 0.01
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.23
Consensus pattern (85 bp):
CCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCA
AAGCCCACAAGTCAGTGGCA
Found at i:4986 original size:114 final size:112
Alignment explanation
Indices: 4820--5803 Score: 1277
Period size: 114 Copynumber: 8.6 Consensus size: 112
4810 AAATGTTCAT
* *
4820 CCCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAATCAGTGGCACTCTTTTC
1 CCCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTC
4885 AAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA
64 AAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
4934 CCCTTTCAAAGCCTACAAATCAGTGGCATTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCA
4999 AAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA
65 AAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA
*
5047 CTCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAG-CCACAAGTCAGTGGCACTCCTTTC
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTC
* *
5111 AAAGCCCACAAGTCAGTGGCACTCCTTTCAAATCCCACAAATCAGTGGCA
64 AAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
5161 CTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGTCCACAACTTAGTGGCACCCTTTCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCA
* *
5226 AAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAATCAGTGGCA
65 AAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
5275 CTCTTTTCAAAGCCCACAAGTTAGTGACACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCA
1 C-CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCA
* *
5340 AAGCCCACAAGTTAGTGGCACTCCTTTCAAAGCTCACAAGTCAGTGGCA
65 AAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
5389 TTCTTTTCAAAGCCCACAAATCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTC
1 -CCCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTC
* * *
5454 AAAGCCCACAAGTTAGTGGCACCCTTTTAGAGCCCACAAGTCAGTGGCA
64 AAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA
* * * * * * * *
5503 CCTTTTCGAAGCCCACAAGTCAGTGGCACCATTGCGAAGCCCACAATTCAGTGGCACTCTTTTAA
1 CCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAA
* *
5568 AGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACACAAGTCAATGGCA
66 AGCCCACAAGTCAGTGGCACCCTTTCAAAG-CC-CACAAGTCAGTGGCA
* * * * * *
5617 CTCCTTTTAAAGCTCACGCAAGTTAGTGGTACCTTTTCAAAGCCCACAAGTCAGTGGCACTCTTT
1 C-CCTTTCAAAGC-C-CACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTT
* * * * *
5682 CAAAGCCCACGAGTTAGTGGCATCCTTTCAAAGCCCACGAGTTAGTGGCA
63 CAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA
** * *
5732 TTCTTTCAAAGCCCACGCAAGTCAGTGGCACCCTTTTAAAGCCCATGCAAGTCAATGGCAACCCT
1 CCCTTTCAAAGCCCA--CAAGTCAGTGGCACCCTTTCAAAGCCCA--CAAGTCAGTGGC-ACCC-
5797 TTTCAAA
60 TTTCAAA
5804 TCACCACTAT
Statistics
Matches: 776, Mismatches: 76, Indels: 32
0.88 0.09 0.04
Matches are distributed among these distances:
112 76 0.10
113 121 0.16
114 396 0.51
115 89 0.11
116 14 0.02
117 73 0.09
118 7 0.01
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.23
Consensus pattern (112 bp):
CCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAA
AGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA
Found at i:6353 original size:20 final size:20
Alignment explanation
Indices: 6325--6399 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
6315 TCATACCCTG
6325 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
6345 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
6365 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
6385 ATGTATCGATACATT
1 ATGTATCGATACATT
6400 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:6392 original size:40 final size:39
Alignment explanation
Indices: 6325--6402 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
6315 TCATACCCTG
* *
6325 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
6365 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
6403 TCTTTTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:11895 original size:15 final size:15
Alignment explanation
Indices: 11872--11928 Score: 51
Period size: 15 Copynumber: 3.6 Consensus size: 15
11862 ACATTCACTA
11872 AAAAAAATATTTTAC
1 AAAAAAATATTTTAC
* **
11887 AAAATAATAAGTTAAAC
1 AAAAAAAT-A-TTTTAC
11904 TAAAAAAATATTTTAC
1 -AAAAAAATATTTTAC
*
11920 AAAATAATA
1 AAAAAAATA
11929 AGTTAAAAAG
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
15 15 0.47
16 5 0.16
17 5 0.16
18 7 0.22
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (15 bp):
AAAAAAATATTTTAC
Found at i:11914 original size:33 final size:33
Alignment explanation
Indices: 11872--11935 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
11862 ACATTCACTA
11872 AAAAAAATATTTTACAAAATAATAAGTTAAACT
1 AAAAAAATATTTTACAAAATAATAAGTTAAACT
11905 AAAAAAATATTTTACAAAATAATAAGTTAAA
1 AAAAAAATATTTTACAAAATAATAAGTTAAA
11936 AAGGCCGGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (33 bp):
AAAAAAATATTTTACAAAATAATAAGTTAAACT
Found at i:12572 original size:2 final size:2
Alignment explanation
Indices: 12561--12594 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
12551 GTTTCAACAG
12561 TC TC -C TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
12595 GCCTACCCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:17703 original size:50 final size:50
Alignment explanation
Indices: 17649--17770 Score: 181
Period size: 50 Copynumber: 2.4 Consensus size: 50
17639 CCACCAAAAT
* * * *
17649 TAATTATTAATTATTCTTCACCAATCTTTGACAATTGAGAGAGATGGCCG
1 TAATTATTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGATGGCCG
* * *
17699 TAATTGTTGACTATTCTTCACTAACCTTTGACAATCGAGAGAGATGGTCG
1 TAATTATTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGATGGCCG
17749 TAATTATTGACTATTCTTCACC
1 TAATTATTGACTATTCTTCACC
17771 TTGACAATAG
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 63 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.37
Consensus pattern (50 bp):
TAATTATTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGATGGCCG
Found at i:17776 original size:45 final size:48
Alignment explanation
Indices: 17660--17805 Score: 172
Period size: 50 Copynumber: 3.0 Consensus size: 48
17650 AATTATTAAT
* * *
17660 TATTCTTCACCAATCTTTGACAATTGAGAGAGATGGCCGTAATTGTTGAC
1 TATTCTT-A-CAACCTTTGACAATAGAGAGAGATGGTCGTAATTGTTGAC
* *
17710 TATTCTTCACTAACCTTTGACAATCGAGAGAGATGGTCGTAATTATTGAC
1 TATTCTT-AC-AACCTTTGACAATAGAGAGAGATGGTCGTAATTGTTGAC
* *
17760 TATTCTT-C-ACC-TTGACAATAGAGAGAGGTGGTCATAATTGTTGAC
1 TATTCTTACAACCTTTGACAATAGAGAGAGATGGTCGTAATTGTTGAC
17805 T
1 T
17806 CTAAGCAACT
Statistics
Matches: 87, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
45 31 0.36
46 3 0.03
48 1 0.01
49 1 0.01
50 51 0.59
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (48 bp):
TATTCTTACAACCTTTGACAATAGAGAGAGATGGTCGTAATTGTTGAC
Found at i:22306 original size:50 final size:50
Alignment explanation
Indices: 22222--22383 Score: 168
Period size: 50 Copynumber: 3.2 Consensus size: 50
22212 CCACCAAAAC
* *
22222 TAATTGTTGACTATTCTTT-ACCAACTTTTAACAATCAAGAGAGGCGGCCA
1 TAATTGTTGACTATT-TTTCACCAACCTTTAACAATCAAGAGAGACGGCCA
* * * * *
22272 TAATTGTTGACTATTTTTCACTAACCTTTGACAATCGAA-AGCGATGGCCG
1 TAATTGTTGACTATTTTTCACCAACCTTTAACAATC-AAGAGAGACGGCCA
* * * *
22322 TAATTGTTGACTATTCTTCACCAACCTTTAACAAT-AGAGAGAGATGGTCG
1 TAATTGTTGACTATTTTTCACCAACCTTTAACAATCA-AGAGAGACGGCCA
*
22372 GAATTGTTGACT
1 TAATTGTTGACT
22384 CTAAGTAACT
Statistics
Matches: 95, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
48 1 0.01
49 4 0.04
50 88 0.93
51 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (50 bp):
TAATTGTTGACTATTTTTCACCAACCTTTAACAATCAAGAGAGACGGCCA
Found at i:24040 original size:11 final size:11
Alignment explanation
Indices: 24016--24049 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
24006 CTAGTTTATT
24016 TTATAAATATAA
1 TTATAAA-ATAA
*
24028 TTATCAAATAA
1 TTATAAAATAA
24039 TTATAAAATAA
1 TTATAAAATAA
24050 GATAAATTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 14 0.70
12 6 0.30
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (11 bp):
TTATAAAATAA
Found at i:25449 original size:18 final size:19
Alignment explanation
Indices: 25431--25467 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
25421 TATTAGCAAT
*
25431 ATCTTTTTCATTAAAAATA
1 ATCTTTTTCAATAAAAATA
*
25450 ATTTTTTTCAATAAAAAT
1 ATCTTTTTCAATAAAAAT
25468 TTTCATTGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (19 bp):
ATCTTTTTCAATAAAAATA
Found at i:25700 original size:32 final size:32
Alignment explanation
Indices: 25644--25710 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
25634 AAAAAATCTA
*
25644 TCAAAAATAGTTTCCAATGGCAAAAGTTTTCG
1 TCAAAAATAGTTTCCAATGACAAAAGTTTTCG
* * * *
25676 TCAAAAATAGTTTTCAGTGACAAAATTTTTTG
1 TCAAAAATAGTTTCCAATGACAAAAGTTTTCG
25708 TCA
1 TCA
25711 TTTCAAATGC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.36
Consensus pattern (32 bp):
TCAAAAATAGTTTCCAATGACAAAAGTTTTCG
Found at i:25810 original size:25 final size:26
Alignment explanation
Indices: 25781--25839 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 26
25771 ATCTTTAAGT
*
25781 TAAATAC-TTTATTTTAA-AATAAATA
1 TAAATACATTTATCTTAATAA-AAATA
25806 TAAATTACATTTATCTTAATAAAAATA
1 TAAA-TACATTTATCTTAATAAAAATA
25833 TATAATA
1 TA-AATA
25840 TAAATATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
25 4 0.14
26 3 0.10
27 18 0.62
28 4 0.14
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (26 bp):
TAAATACATTTATCTTAATAAAAATA
Found at i:25848 original size:15 final size:14
Alignment explanation
Indices: 25823--25872 Score: 61
Period size: 13 Copynumber: 3.7 Consensus size: 14
25813 CATTTATCTT
*
25823 AATAAAAATATAT-
1 AATATAAATATATA
25836 AATATAAATATATA
1 AATATAAATATATA
25850 AATAATAAATA-ATA
1 AAT-ATAAATATATA
25864 AATA-AAATA
1 AATATAAATA
25873 CAATTAAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
12 5 0.15
13 13 0.38
14 9 0.26
15 7 0.21
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AATATAAATATATA
Found at i:25857 original size:7 final size:7
Alignment explanation
Indices: 25823--25868 Score: 53
Period size: 7 Copynumber: 6.7 Consensus size: 7
25813 CATTTATCTT
25823 AATAA-A
1 AATAATA
25829 AAT-ATA
1 AATAATA
25835 TAAT-ATA
1 -AATAATA
25842 AATATATA
1 AATA-ATA
25850 AATAATA
1 AATAATA
25857 AATAATA
1 AATAATA
25864 AATAA
1 AATAA
25869 AATACAATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
5 1 0.03
6 7 0.19
7 21 0.58
8 7 0.19
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
AATAATA
Found at i:27642 original size:34 final size:34
Alignment explanation
Indices: 27577--27642 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
27567 CTTTGTTAAG
*
27577 TGTATTTGGTGAGAATGTTAGGTGCGTTAGGTAA
1 TGTATTTGGTGAGAATGTTAGGTGCGCTAGGTAA
*
27611 TGTATTTGGTGAGAATGTTAGGTGTGCTAGGT
1 TGTATTTGGTGAGAATGTTAGGTGCGCTAGGT
27643 GAGAATGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.21, C:0.03, G:0.36, T:0.39
Consensus pattern (34 bp):
TGTATTTGGTGAGAATGTTAGGTGCGCTAGGTAA
Found at i:27646 original size:22 final size:22
Alignment explanation
Indices: 27618--27666 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
27608 TAATGTATTT
*
27618 GGTGAGAATGTTAGGTGTGCTA
1 GGTGAGAATGTTACGTGTGCTA
*
27640 GGTGAGAATGTTACGTGTGTTA
1 GGTGAGAATGTTACGTGTGCTA
27662 GGTGA
1 GGTGA
27667 TGTATTTGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.22, C:0.04, G:0.41, T:0.33
Consensus pattern (22 bp):
GGTGAGAATGTTACGTGTGCTA
Found at i:27646 original size:56 final size:56
Alignment explanation
Indices: 27584--27692 Score: 191
Period size: 56 Copynumber: 1.9 Consensus size: 56
27574 AAGTGTATTT
*
27584 GGTGAGAATGTTAGGTGCGTTAGGTAATGTATTTGGTGAGAATGTTAGGTGTGCTA
1 GGTGAGAATGTTACGTGCGTTAGGTAATGTATTTGGTGAGAATGTTAGGTGTGCTA
* *
27640 GGTGAGAATGTTACGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTG
1 GGTGAGAATGTTACGTGCGTTAGGTAATGTATTTGGTGAGAATGTTAGGTGTG
27693 TTAACATTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.22, C:0.03, G:0.39, T:0.37
Consensus pattern (56 bp):
GGTGAGAATGTTACGTGCGTTAGGTAATGTATTTGGTGAGAATGTTAGGTGTGCTA
Found at i:32415 original size:34 final size:34
Alignment explanation
Indices: 32372--32541 Score: 322
Period size: 34 Copynumber: 5.0 Consensus size: 34
32362 CTTTGTTAAG
*
32372 TGTATTTGGTGAGAATGTTAGGTGCGTTAGGTGA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
32406 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
32440 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
32474 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
*
32508 TGTGTTTGGTGAGAATGTTAGGTGTGTTAGGTGA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
32542 GAATGTTAGG
Statistics
Matches: 134, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
34 134 1.00
ACGTcount: A:0.20, C:0.01, G:0.39, T:0.41
Consensus pattern (34 bp):
TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
Found at i:32426 original size:25 final size:25
Alignment explanation
Indices: 32397--32497 Score: 78
Period size: 25 Copynumber: 4.3 Consensus size: 25
32387 TGTTAGGTGC
32397 GTTAGGTGATGTATTTGGTGAGAAT
1 GTTAGGTGATGTATTTGGTGAGAAT
* *
32422 GTTAGGTG-TG--TTAGGTGATGTAT
1 GTTAGGTGATGTATTTGGTGA-GAAT
*
32445 -TT-GGTGA-GAATGTTAGGT--G--T
1 GTTAGGTGATGTAT-TT-GGTGAGAAT
32465 GTTAGGTGATGTATTTGGTGAGAAT
1 GTTAGGTGATGTATTTGGTGAGAAT
32490 GTTAGGTG
1 GTTAGGTG
32498 TGTTAGGTGA
Statistics
Matches: 59, Mismatches: 4, Indels: 26
0.66 0.04 0.29
Matches are distributed among these distances:
20 1 0.02
21 10 0.17
22 17 0.29
23 8 0.14
24 3 0.05
25 20 0.34
ACGTcount: A:0.21, C:0.00, G:0.39, T:0.41
Consensus pattern (25 bp):
GTTAGGTGATGTATTTGGTGAGAAT
Found at i:32540 original size:22 final size:22
Alignment explanation
Indices: 32508--32563 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
32498 TGTTAGGTGA
*
32508 TGTGTTTGGTGAGAATGTTAGG
1 TGTGTTAGGTGAGAATGTTAGG
32530 TGTGTTAGGTGAGAATGTTAGG
1 TGTGTTAGGTGAGAATGTTAGG
32552 TGTGTTAGGTGA
1 TGTGTTAGGTGA
32564 TGTATTTGGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (22 bp):
TGTGTTAGGTGAGAATGTTAGG
Found at i:32548 original size:56 final size:56
Alignment explanation
Indices: 32481--32592 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
32471 TGATGTATTT
*
32481 GGTGAGAATGTTAGGTGTGTTAGGTGATGTGTTTGGTGAGAATGTTAGGTGTGTTA
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTA
32537 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTA
1 GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTA
32593 ACATTTATAT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.21, C:0.00, G:0.40, T:0.39
Consensus pattern (56 bp):
GGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTA
Found at i:32575 original size:68 final size:66
Alignment explanation
Indices: 32372--32592 Score: 318
Period size: 68 Copynumber: 3.4 Consensus size: 66
32362 CTTTGTTAAG
*
32372 TGTATTTGGTGAGAATGTTAGGTGCGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGG
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGT-AG-ATGTTAGGTGTGTTAGG
32437 TGA
64 TGA
32440 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGG
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGT-AG-ATGTTAGGTGTGTTAGG
32505 TGA
64 TGA
*
32508 TGTGTTTGGTGAGAATGTTAGGTGTGTTA-G-G-TG-A----G-A-ATGTTAGGTGTGTTAGGTG
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTAGATGTTAGGTGTGTTAGGTG
32563 A
66 A
32564 TGTATTTGGTGAGAATGTTAGGTGTGTTA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTA
32593 ACATTTATAT
Statistics
Matches: 150, Mismatches: 3, Indels: 12
0.91 0.02 0.07
Matches are distributed among these distances:
56 48 0.32
58 1 0.01
60 1 0.01
64 1 0.01
65 2 0.01
66 1 0.01
67 1 0.01
68 95 0.63
ACGTcount: A:0.20, C:0.00, G:0.38, T:0.41
Consensus pattern (66 bp):
TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTAGATGTTAGGTGTGTTAGGTG
A
Found at i:32575 original size:102 final size:100
Alignment explanation
Indices: 32372--32592 Score: 318
Period size: 102 Copynumber: 2.3 Consensus size: 100
32362 CTTTGTTAAG
32372 TGTATTTGGTGAGAATGTTAGGTGCGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGG
1 TGTATTTGGTGAGAATGTTAGGTGCGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGG
*
32437 TGATGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
66 TGATGAATTTGGT-AG-ATGTTAGGTGTGTTAGGTGA
* *
32474 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTGTTTGGTGAGAATGTTAGGTGTGTTA-G
1 TGTATTTGGTGAGAATGTTAGGTGCGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGG
32538 -G-TG-A----G-A-ATGTTAGGTGTGTTAGGTGA
66 TGATGAATTTGGTAGATGTTAGGTGTGTTAGGTGA
*
32564 TGTATTTGGTGAGAATGTTAGGTGTGTTA
1 TGTATTTGGTGAGAATGTTAGGTGCGTTA
32593 ACATTTATAT
Statistics
Matches: 117, Mismatches: 2, Indels: 12
0.89 0.02 0.09
Matches are distributed among these distances:
90 49 0.42
92 1 0.01
94 1 0.01
98 1 0.01
99 2 0.02
100 1 0.01
101 1 0.01
102 61 0.52
ACGTcount: A:0.20, C:0.00, G:0.38, T:0.41
Consensus pattern (100 bp):
TGTATTTGGTGAGAATGTTAGGTGCGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGG
TGATGAATTTGGTAGATGTTAGGTGTGTTAGGTGA
Found at i:33165 original size:13 final size:13
Alignment explanation
Indices: 33147--33176 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
33137 AATACGTATG
33147 TAAATTTAAAAAA
1 TAAATTTAAAAAA
*
33160 TAAATTTAAAACA
1 TAAATTTAAAAAA
33173 TAAA
1 TAAA
33177 ATTATTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (13 bp):
TAAATTTAAAAAA
Found at i:34844 original size:71 final size:70
Alignment explanation
Indices: 34728--34918 Score: 319
Period size: 71 Copynumber: 2.7 Consensus size: 70
34718 ATAAAATTGA
* * *
34728 AGATTCAATTTATATAAATTATTATAGAATGGTTAAACTTAAAATTTTTGATAGAACATTATAAT
1 AGATTCAATTTATACAAATTATTATAGAATGATTAAA-TTAAAATTTTTGATAGAACATAATAAT
34793 AGAGAG
65 AGAGAG
34799 AGATTCAATTTATACAAATTATTATAGAATGATTAAATTTAAAATTTTTGATAGAACATAATAAT
1 AGATTCAATTTATACAAATTATTATAGAATGATTAAA-TTAAAATTTTTGATAGAACATAATAAT
34864 AGAGAG
65 AGAGAG
*
34870 AGATTCAATTTATACAAATTATTATAGAATGATTTAATTAATAATTTTT
1 AGATTCAATTTATACAAATTATTATAGAATGATTAAATTAA-AATTTTT
34919 AATACTACAA
Statistics
Matches: 114, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
70 4 0.04
71 110 0.96
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.40
Consensus pattern (70 bp):
AGATTCAATTTATACAAATTATTATAGAATGATTAAATTAAAATTTTTGATAGAACATAATAATA
GAGAG
Found at i:35201 original size:31 final size:31
Alignment explanation
Indices: 35166--35225 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
35156 TATAACATAT
*
35166 ATATATATAATATAATTAAAA-TAATATAAGG
1 ATATAAAT-ATATAATTAAAATTAATATAAGG
**
35197 ATATAAATATATTTTTAAAATTAATATAA
1 ATATAAATATATAATTAAAATTAATATAA
35226 TATAAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 10 0.40
31 15 0.60
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (31 bp):
ATATAAATATATAATTAAAATTAATATAAGG
Found at i:35336 original size:45 final size:45
Alignment explanation
Indices: 35251--35341 Score: 132
Period size: 45 Copynumber: 2.0 Consensus size: 45
35241 TATTATTTAT
35251 TTTAAAAAATTATAAATATTTTAAAATCTATATAAATATAAAATAA
1 TTTAAAAAATTATAAATATTTTAAAA-CTATATAAATATAAAATAA
*
35297 TTTAAATATAATTAT-AATATTTTAAAA-TATATAAATATAATATAA
1 TTTAAA-A-AATTATAAATATTTTAAAACTATATAAATATAAAATAA
35342 ATATACAAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
45 17 0.40
46 6 0.14
47 13 0.31
48 6 0.14
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (45 bp):
TTTAAAAAATTATAAATATTTTAAAACTATATAAATATAAAATAA
Found at i:36991 original size:39 final size:39
Alignment explanation
Indices: 36937--37016 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
36927 AGGAAAGATA
*
36937 ATTCTTTATATTTACTCTGCCTTCAACAATTATGAAACC
1 ATTCTTTATATTTACTCTGCCGTCAACAATTATGAAACC
36976 ATTCTTTATATTTACTCTGCCGTCAACAATTATGAAACC
1 ATTCTTTATATTTACTCTGCCGTCAACAATTATGAAACC
37015 AT
1 AT
37017 GATTAGCATG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.40
Consensus pattern (39 bp):
ATTCTTTATATTTACTCTGCCGTCAACAATTATGAAACC
Found at i:41036 original size:17 final size:17
Alignment explanation
Indices: 41014--41056 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
41004 AAATTATATT
*
41014 TATATATCATA-ATCATA
1 TATATAT-ATATATCAAA
41031 TATATATATATATCAAA
1 TATATATATATATCAAA
*
41048 TATAAATAT
1 TATATATAT
41057 TATTTTATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 3 0.13
17 20 0.87
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (17 bp):
TATATATATATATCAAA
Found at i:41987 original size:23 final size:24
Alignment explanation
Indices: 41952--41998 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
41942 AATATAACTT
* * *
41952 AAAATATTTATTTTTATAT-TAAA
1 AAAATAATGATTTTAATATATAAA
41975 AAAATAATGATTTTAATATATAAA
1 AAAATAATGATTTTAATATATAAA
41999 TATTTAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (24 bp):
AAAATAATGATTTTAATATATAAA
Found at i:42823 original size:2 final size:2
Alignment explanation
Indices: 42816--42850 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
42806 TTGATCAATC
42816 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
42851 AAAGAGGATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:43613 original size:22 final size:21
Alignment explanation
Indices: 43583--43624 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
43573 ATTTCGTTGA
43583 AATTAAAAAATAAAATTTTTAT
1 AATTAAAAAAT-AAATTTTTAT
* *
43605 AATTTAAAAATTAATTTTTA
1 AATTAAAAAATAAATTTTTA
43625 ATAAAATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
AATTAAAAAATAAATTTTTAT
Found at i:44490 original size:17 final size:17
Alignment explanation
Indices: 44458--44492 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
44448 ATTTTATTTT
* *
44458 AAAATAATATTTTTTAA
1 AAAATAATAATATTTAA
44475 AAAATAATAATATTTAA
1 AAAATAATAATATTTAA
44492 A
1 A
44493 TGATTAAGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAAATAATAATATTTAA
Found at i:44850 original size:15 final size:15
Alignment explanation
Indices: 44825--44867 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
44815 TTAATTTGTT
* *
44825 TAAATAATAAATATT
1 TAAATATTAAATATA
*
44840 TTAATATTAAATATA
1 TAAATATTAAATATA
*
44855 TAAATATTTAATA
1 TAAATATTAAATA
44868 AAAGTATATA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TAAATATTAAATATA
Found at i:44850 original size:22 final size:22
Alignment explanation
Indices: 44824--44867 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
44814 ATTAATTTGT
44824 TTAAATA-ATAAATATTTTAATA
1 TTAAATATATAAATA-TTTAATA
44846 TTAAATATATAAATATTTAATA
1 TTAAATATATAAATATTTAATA
44868 AAAGTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
TTAAATATATAAATATTTAATA
Found at i:44894 original size:19 final size:19
Alignment explanation
Indices: 44818--44892 Score: 55
Period size: 22 Copynumber: 3.8 Consensus size: 19
44808 AATTGAATTA
44818 ATTTGTTTAAATAATAAAT
1 ATTTGTTTAAATAATAAAT
*
44837 ATTTTAATATTAAATATATAAAT
1 A-TTT-GT-TTAAATA-ATAAAT
** * *
44860 ATTT-AATAAA-AGTATAT
1 ATTTGTTTAAATAATAAAT
44877 ATTTGTTTAAATAATA
1 ATTTGTTTAAATAATA
44893 TAATTTTTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 12
0.68 0.13 0.19
Matches are distributed among these distances:
17 8 0.19
18 5 0.12
19 8 0.19
20 3 0.07
21 1 0.02
22 10 0.24
23 7 0.17
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (19 bp):
ATTTGTTTAAATAATAAAT
Found at i:45499 original size:13 final size:13
Alignment explanation
Indices: 45481--45547 Score: 56
Period size: 13 Copynumber: 5.5 Consensus size: 13
45471 TCAATATTTT
45481 TAAATATTTTATA
1 TAAATATTTTATA
45494 TAAATA-TTTATA
1 TAAATATTTTATA
**
45506 -ATTTATTTT-TA
1 TAAATATTTTATA
45517 -AAAT-TTTTA-A
1 TAAATATTTTATA
*
45527 TAAAATATATTATA
1 T-AAATATTTTATA
45541 TAAATAT
1 TAAATAT
45548 GCAAATATAA
Statistics
Matches: 43, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
10 5 0.12
11 7 0.16
12 13 0.30
13 16 0.37
14 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TAAATATTTTATA
Found at i:45513 original size:34 final size:35
Alignment explanation
Indices: 45475--45540 Score: 93
Period size: 34 Copynumber: 1.9 Consensus size: 35
45465 AGTTTATCAA
45475 TATTTTT-AAATATTTT-ATATAAATAT-TTATAATT
1 TATTTTTAAAAT-TTTTAATA-AAATATATTATAATT
45509 TATTTTTAAAATTTTTAATAAAATATATTATA
1 TATTTTTAAAATTTTTAATAAAATATATTATA
45541 TAAATATGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (35 bp):
TATTTTTAAAATTTTTAATAAAATATATTATAATT
Found at i:46151 original size:26 final size:27
Alignment explanation
Indices: 46113--46166 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
46103 ATTATTATAA
*
46113 AATTAATATGAATAATTAAAAATAAAT
1 AATTAATATGAATAATAAAAAATAAAT
*
46140 AATT-ATATGAATAATAAAAAATTAAT
1 AATTAATATGAATAATAAAAAATAAAT
46166 A
1 A
46167 GAAAAATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (27 bp):
AATTAATATGAATAATAAAAAATAAAT
Found at i:46174 original size:19 final size:19
Alignment explanation
Indices: 46130--46174 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
46120 ATGAATAATT
*
46130 AAAAATAAATAATTATATG
1 AAAAATAAAAAATTATATG
*
46149 AATAATAAAAAATTA-ATAG
1 AAAAATAAAAAATTATAT-G
46168 AAAAATA
1 AAAAATA
46175 TTATTTGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 2 0.09
19 20 0.91
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (19 bp):
AAAAATAAAAAATTATATG
Found at i:46641 original size:3 final size:3
Alignment explanation
Indices: 46635--46675 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
46625 AAAAAAAATG
46635 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
46676 CCTAAAGGTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:47210 original size:14 final size:15
Alignment explanation
Indices: 47182--47212 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
47172 TTTAATTGAT
47182 TTAAATTTAAAATAA
1 TTAAATTTAAAATAA
47197 TTAAATTT-AAATAA
1 TTAAATTTAAAATAA
47211 TT
1 TT
47213 TAAAATATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATTTAAAATAA
Found at i:47212 original size:24 final size:22
Alignment explanation
Indices: 47185--47229 Score: 72
Period size: 24 Copynumber: 2.0 Consensus size: 22
47175 AATTGATTTA
47185 AATTTAAAATAATTAAATTTAAAT
1 AATTTAAAAT-ATT-AATTTAAAT
47209 AATTTAAAATATTAATTTAAA
1 AATTTAAAATATTAATTTAAA
47230 ATGATTCGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.38
23 3 0.14
24 10 0.48
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
AATTTAAAATATTAATTTAAAT
Found at i:47215 original size:15 final size:16
Alignment explanation
Indices: 47180--47216 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
47170 GTTTTAATTG
47180 ATTTAAATTTAAAATA
1 ATTTAAATTTAAAATA
47196 A-TTAAATTT-AAATA
1 ATTTAAATTTAAAATA
47210 ATTTAAA
1 ATTTAAA
47217 ATATTAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 6 0.30
15 13 0.65
16 1 0.05
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
ATTTAAATTTAAAATA
Found at i:47228 original size:37 final size:39
Alignment explanation
Indices: 47185--47319 Score: 107
Period size: 42 Copynumber: 3.4 Consensus size: 39
47175 AATTGATTTA
*
47185 AATTTAAAATAATT-AAATTTAAA-TAATTTAAAATATT
1 AATTTAAAATAATTCAAATTTAAATTAAATTAAAATATT
* *
47222 AATTTAAAATGATTCGAATTTAAATTAAATTAAAAT-TT
1 AATTTAAAATAATTCAAATTTAAATTAAATTAAAATATT
* * *
47260 ATTTTTTAAAA-AATATTAATTTAATAAATTAAATTAAAATTACTT
1 A--ATTTAAAATAAT-TCAAATT--TAAATTAAATTAAAA-TA-TT
*
47305 AAATTCAAAATAATT
1 -AATTTAAAATAATT
47320 ATATACTCAA
Statistics
Matches: 76, Mismatches: 10, Indels: 17
0.74 0.10 0.17
Matches are distributed among these distances:
37 13 0.17
38 11 0.14
39 12 0.16
40 11 0.14
42 15 0.20
43 1 0.01
44 7 0.09
45 5 0.07
46 1 0.01
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.43
Consensus pattern (39 bp):
AATTTAAAATAATTCAAATTTAAATTAAATTAAAATATT
Found at i:47243 original size:16 final size:13
Alignment explanation
Indices: 47208--47299 Score: 50
Period size: 13 Copynumber: 6.8 Consensus size: 13
47198 TAAATTTAAA
47208 TAATTTAAAATAT
1 TAATTTAAAATAT
47221 TAATTTAAAATGAT
1 TAATTTAAAAT-AT
47235 TCGAATTT--AA-AT
1 T--AATTTAAAATAT
*
47247 TAAATTAAAAT-T
1 TAATTTAAAATAT
*
47259 TATTTTTTAAAAAATAT
1 TA--ATTT--AAAATAT
47276 TAATTTAATAA-AT
1 TAATTTAA-AATAT
*
47289 TAAATTAAAAT
1 TAATTTAAAAT
47300 TACTTAAATT
Statistics
Matches: 61, Mismatches: 5, Indels: 26
0.66 0.05 0.28
Matches are distributed among these distances:
10 4 0.07
12 10 0.16
13 22 0.36
14 9 0.15
15 3 0.05
16 10 0.16
17 3 0.05
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.45
Consensus pattern (13 bp):
TAATTTAAAATAT
Found at i:47503 original size:2 final size:2
Alignment explanation
Indices: 47496--47549 Score: 90
Period size: 2 Copynumber: 27.0 Consensus size: 2
47486 CAAGTGCCTT
* *
47496 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
47538 TA TA TA TA TA TA
1 TA TA TA TA TA TA
47550 CATACAATTA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:47999 original size:2 final size:2
Alignment explanation
Indices: 47992--48025 Score: 52
Period size: 2 Copynumber: 17.0 Consensus size: 2
47982 TGAATATCGA
47992 AT AT AT AT -T AT CAT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT
48026 TTAAATTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 1 0.03
2 27 0.90
3 2 0.07
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51948 original size:22 final size:20
Alignment explanation
Indices: 51916--51959 Score: 61
Period size: 22 Copynumber: 2.1 Consensus size: 20
51906 ATTAATATAA
*
51916 AATAATTTTTTACATATTTT
1 AATAATTTTTTAAATATTTT
51936 AATATATTATTTTAAATATTTT
1 AATA-ATT-TTTTAAATATTTT
51958 AA
1 AA
51960 AATCACGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 3 0.14
22 14 0.67
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (20 bp):
AATAATTTTTTAAATATTTT
Found at i:54664 original size:2 final size:2
Alignment explanation
Indices: 54657--54704 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
54647 TAATTATTGT
54657 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
54699 TA TA TA
1 TA TA TA
54705 ATAACATGTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:55526 original size:6 final size:6
Alignment explanation
Indices: 55517--55558 Score: 66
Period size: 6 Copynumber: 7.0 Consensus size: 6
55507 TGCTTAAATG
* *
55517 TGTATA TGTATA TGTATT TGTATA TGTATA TGAATA TGTATA
1 TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA
55559 CATGTAACTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
TGTATA
Found at i:55856 original size:18 final size:19
Alignment explanation
Indices: 55813--55856 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
55803 AAAATTGGTG
55813 AAAATTTTTATAATTAATA
1 AAAATTTTTATAATTAATA
55832 AATAATTTTT-TAA-TAATTA
1 AA-AATTTTTATAATTAA-TA
55851 AAAATT
1 AAAATT
55857 AAAAATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 7 0.30
19 9 0.39
20 7 0.30
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
AAAATTTTTATAATTAATA
Found at i:55865 original size:28 final size:30
Alignment explanation
Indices: 55824--55901 Score: 108
Period size: 28 Copynumber: 2.7 Consensus size: 30
55814 AAATTTTTAT
*
55824 AATTAATAAATAATTTTTTAATAATTAA-A
1 AATTAATAAATAATATTTTAATAATTAATA
55853 AATTAA-AAATAATATTTTAATAATTAATA
1 AATTAATAAATAATATTTTAATAATTAATA
* *
55882 AA-TAATAAATTAGATTTTAA
1 AATTAATAAATAATATTTTAA
55902 ATGAGAAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
28 23 0.52
29 21 0.48
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.42
Consensus pattern (30 bp):
AATTAATAAATAATATTTTAATAATTAATA
Found at i:55872 original size:21 final size:22
Alignment explanation
Indices: 55848--55888 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
55838 TTTTTAATAA
55848 TTAAAAATTAA-AAATAATATT
1 TTAAAAATTAATAAATAATATT
*
55869 TTAATAATTAATAAATAATA
1 TTAAAAATTAATAAATAATA
55889 AATTAGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (22 bp):
TTAAAAATTAATAAATAATATT
Found at i:63660 original size:3 final size:3
Alignment explanation
Indices: 63645--63676 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
63635 GGAAAATGCT
*
63645 GAA GAA GAG GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
63677 GGATTCATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:65293 original size:22 final size:22
Alignment explanation
Indices: 65268--65322 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
65258 TATATTATTT
65268 TTTTATGTTAT-TTTATATCATA
1 TTTTATGTTATATTTATAT-ATA
*
65290 TTTTATATTAATATTTATATATA
1 TTTTATGTT-ATATTTATATATA
*
65313 -ATTATGTTAT
1 TTTTATGTTAT
65323 GTTGAATACT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 2 0.07
22 14 0.50
23 5 0.18
24 7 0.25
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.62
Consensus pattern (22 bp):
TTTTATGTTATATTTATATATA
Found at i:65314 original size:13 final size:12
Alignment explanation
Indices: 65276--65314 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
65266 TTTTTTATGT
*
65276 TATTTTATATCA
1 TATTTTATATAA
65288 TATTTTATATTAA
1 TATTTTATA-TAA
65301 TATTTATATATAA
1 TATTT-TATATAA
65314 T
1 T
65315 TATGTTATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 9 0.38
13 11 0.46
14 4 0.17
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (12 bp):
TATTTTATATAA
Done.