Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1926
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 74475
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Found at i:2287 original size:13 final size:13
Alignment explanation
Indices: 2269--2293 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2259 CACATTGCTT
2269 TGTATCGATACAA
1 TGTATCGATACAA
2282 TGTATCGATACA
1 TGTATCGATACA
2294 TGTTCTTGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2292 original size:33 final size:32
Alignment explanation
Indices: 2248--2312 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
2238 ACAGGCCCAG
* *
2248 ATGTATTGATACACATTGCTTTGTATCGATACA
1 ATGTATCGATACACATT-CTTGGTATCGATACA
**
2281 ATGTATCGATACATGTTCTTGGTATCGATACA
1 ATGTATCGATACACATTCTTGGTATCGATACA
2313 CAGCAAATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (32 bp):
ATGTATCGATACACATTCTTGGTATCGATACA
Found at i:5216 original size:20 final size:20
Alignment explanation
Indices: 5173--5224 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
5163 CTTAACTGTT
*
5173 TGTATCGATACA-CACAATA
1 TGTATCGATACATCACAAAA
*
5192 TGTATCGATACATCCCAAAA
1 TGTATCGATACATCACAAAA
*
5212 TGTATTGATACAT
1 TGTATCGATACAT
5225 TGGCTTGTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATCACAAAA
Found at i:6723 original size:3 final size:3
Alignment explanation
Indices: 6708--6738 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
6698 AACCATCAAG
*
6708 GAT GAT GAA GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
6739 GTGACTCAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:11298 original size:13 final size:13
Alignment explanation
Indices: 11280--11315 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
11270 GCATTCTCTA
*
11280 TATCGATACATTG
1 TATCGATACAGTG
11293 TATCGATACAGTG
1 TATCGATACAGTG
11306 TATCGATACA
1 TATCGATACA
11316 AAGGGTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (13 bp):
TATCGATACAGTG
Found at i:13681 original size:34 final size:35
Alignment explanation
Indices: 13643--13709 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
13633 CCTTACAACA
13643 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCCCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCCCT
13677 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
13710 AATCACTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCCCT
Found at i:14187 original size:13 final size:13
Alignment explanation
Indices: 14169--14194 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14159 AATTTTTTGG
14169 TGTATCGATACAT
1 TGTATCGATACAT
14182 TGTATCGATACAT
1 TGTATCGATACAT
14195 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:16088 original size:13 final size:13
Alignment explanation
Indices: 16070--16094 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16060 ACTGAAGTAA
16070 TGTATCGATACAT
1 TGTATCGATACAT
16083 TGTATCGATACA
1 TGTATCGATACA
16095 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:17059 original size:20 final size:20
Alignment explanation
Indices: 17034--17082 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
17024 CCAACATTCT
17034 TGTGCTTTGGTCATTGGTCA
1 TGTGCTTTGGTCATTGGTCA
17054 TGTGCTTTGGTCATTGGTCA
1 TGTGCTTTGGTCATTGGTCA
*
17074 TATGCTTTG
1 TGTGCTTTG
17083 AGCACTTACT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.10, C:0.14, G:0.29, T:0.47
Consensus pattern (20 bp):
TGTGCTTTGGTCATTGGTCA
Found at i:19305 original size:34 final size:35
Alignment explanation
Indices: 19267--19333 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
19257 CTTTACAACA
19267 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
19301 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
19334 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:19811 original size:13 final size:13
Alignment explanation
Indices: 19793--19818 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
19783 AATTTTTTGG
19793 TGTATCGATACAT
1 TGTATCGATACAT
19806 TGTATCGATACAT
1 TGTATCGATACAT
19819 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:20451 original size:22 final size:21
Alignment explanation
Indices: 20421--20465 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
20411 CTAAATAGGT
20421 ATGAATG-TTTTCAAGGCTTAAA
1 ATGAATGTTTTTCAA-G-TTAAA
*
20443 ATGAGTGTTTTTCAAGTTAAA
1 ATGAATGTTTTTCAAGTTAAA
20464 AT
1 AT
20466 ATATCAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 7 0.33
22 7 0.33
23 7 0.33
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.40
Consensus pattern (21 bp):
ATGAATGTTTTTCAAGTTAAA
Found at i:20603 original size:13 final size:13
Alignment explanation
Indices: 20585--20609 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20575 AGATTGCATA
20585 GTATCGATACATT
1 GTATCGATACATT
20598 GTATCGATACAT
1 GTATCGATACAT
20610 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:20728 original size:13 final size:13
Alignment explanation
Indices: 20710--20735 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20700 ACACACAATA
20710 TGTATCGATACAT
1 TGTATCGATACAT
20723 TGTATCGATACAT
1 TGTATCGATACAT
20736 CCCAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:20751 original size:33 final size:32
Alignment explanation
Indices: 20690--20757 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 32
20680 CCTTAACTGT
*
20690 TTGTATCGATACACACAATATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
20722 TTGTATCGATACATCCCAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
20755 TTG
1 TTG
20758 GCTTGTAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:24564 original size:60 final size:59
Alignment explanation
Indices: 24461--24676 Score: 186
Period size: 60 Copynumber: 3.8 Consensus size: 59
24451 ATGCGAAGAA
** * * *
24461 TGCCAATATGCTGATTCACA-GCTAGTGATATCATGCTTGAAGATGAGAAGAAGATAAAAG
1 TGCCAATATGCTGATTCA-AGGCTAACGATATTAGGCTTAAAGATGAGAAGAAGAT-AAAG
* * *
24521 TGCCAATATGTTGATTCAAGACTAACGATATTAGGCTTAAAGATGA-CA-AAG-----G
1 TGCCAATATGCTGATTCAAGGCTAACGATATTAGGCTTAAAGATGAGAAGAAGATAAAG
* *
24573 TGCCAATGTGCTGATTCAAGGCTAAC---ATT-GGACTTGAAGATGAGAAGAATGATAAAGG
1 TGCCAATATGCTGATTCAAGGCTAACGATATTAGG-CTTAAAGATGAGAAGAA-GATAAA-G
** *
24631 TGCCAATATGCTGATTCAAGGCTAGTGATATTGGGCTTAAAGATGA
1 TGCCAATATGCTGATTCAAGGCTAACGATATTAGGCTTAAAGATGA
24677 CAAAGGGCCA
Statistics
Matches: 124, Mismatches: 17, Indels: 29
0.73 0.10 0.17
Matches are distributed among these distances:
48 2 0.02
49 13 0.10
50 1 0.01
51 2 0.02
52 25 0.20
58 27 0.22
59 2 0.02
60 37 0.30
61 13 0.10
62 2 0.02
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (59 bp):
TGCCAATATGCTGATTCAAGGCTAACGATATTAGGCTTAAAGATGAGAAGAAGATAAAG
Found at i:24661 original size:110 final size:105
Alignment explanation
Indices: 24496--24700 Score: 311
Period size: 110 Copynumber: 1.9 Consensus size: 105
24486 TGATATCATG
*
24496 CTTGAAGATGAGAAGAAGATAAAAGTGCCAATATGTTGATTCAAGACTAACGATATTAGGCTTAA
1 CTTGAAGATGAGAAGAAGATAAAAGTGCCAATATGCTGATTCAAGACTAACGATATTAGGCTTAA
24561 AGATGACAAAGGTGCCAATGTGCTGATTCAAGGCTAACATTGGA
66 AGATGACAAAGG-GCC-A--TGCTGATTCAAGGCTAACATTGGA
* * ** *
24605 CTTGAAGATGAGAAGAATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGTGATATTGGGCTTA
1 CTTGAAGATGAGAAGAA-GATAAAAGTGCCAATATGCTGATTCAAGACTAACGATATTAGGCTTA
24670 AAGATGACAAAGGGCCATGCTGATTCAAGGC
65 AAGATGACAAAGGGCCATGCTGATTCAAGGC
24701 CAACGATATT
Statistics
Matches: 89, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
106 14 0.16
108 1 0.01
109 20 0.22
110 54 0.61
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.24
Consensus pattern (105 bp):
CTTGAAGATGAGAAGAAGATAAAAGTGCCAATATGCTGATTCAAGACTAACGATATTAGGCTTAA
AGATGACAAAGGGCCATGCTGATTCAAGGCTAACATTGGA
Found at i:24694 original size:48 final size:49
Alignment explanation
Indices: 24626--24759 Score: 155
Period size: 48 Copynumber: 2.7 Consensus size: 49
24616 GAAGAATGAT
* * *
24626 AAAGGTGCCAATATGCTGATTCAAGGCTAGTGATATTGGGCTTAAAGATGAC
1 AAAGGTGCC-A-ATGCTGATTCAAGGCCAGTGATATT-GACTTAAAGATAAC
**
24678 AAAGG-GCC-ATGCTGATTCAAGGCCAACGATATTGACTTAAAGATAAC
1 AAAGGTGCCAATGCTGATTCAAGGCCAGTGATATTGACTTAAAGATAAC
*
24725 AAAGGTGCCAATATGCTAATTCAAGGCCAGTGATA
1 AAAGGTGCC-A-ATGCTGATTCAAGGCCAGTGATA
24760 CTGATACAAG
Statistics
Matches: 70, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
47 17 0.24
48 25 0.36
51 23 0.33
52 5 0.07
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (49 bp):
AAAGGTGCCAATGCTGATTCAAGGCCAGTGATATTGACTTAAAGATAAC
Found at i:24753 original size:51 final size:52
Alignment explanation
Indices: 24520--24753 Score: 196
Period size: 52 Copynumber: 4.5 Consensus size: 52
24510 GAAGATAAAA
* * * *
24520 GTGCCAATATGTTGATTCAAGACTAACGATATTAGG-CTTAAAGATGACAAAG
1 GTGCCAATATGCTGATTCAAGGCCAACGATATT-GGACTTAAAGATAACAAAG
* * * * *
24572 GTGCCAATGTGCTGATTCAAGGCTAAC-ATTGGACTTGAAGA-TGAGAAGAATGATAAAG
1 GTGCCAATATGCTGATTCAAGGCCAACGA-T--A-TTG--GACTTA-AAG-ATAACAAAG
* ** * *
24630 GTGCCAATATGCTGATTCAAGGCTAGTGATATTGGGCTTAAAGATGACAAAG
1 GTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATAACAAAG
24682 G-GCC---ATGCTGATTCAAGGCCAACGATATT-GACTTAAAGATAACAAAG
1 GTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATAACAAAG
*
24729 GTGCCAATATGCTAATTCAAGGCCA
1 GTGCCAATATGCTGATTCAAGGCCA
24754 GTGATACTGA
Statistics
Matches: 150, Mismatches: 17, Indels: 31
0.76 0.09 0.16
Matches are distributed among these distances:
47 17 0.11
48 25 0.17
51 20 0.13
52 34 0.23
53 4 0.03
54 4 0.03
55 5 0.03
56 4 0.03
57 3 0.02
58 33 0.22
59 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.25
Consensus pattern (52 bp):
GTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATAACAAAG
Found at i:24805 original size:71 final size:71
Alignment explanation
Indices: 24689--24830 Score: 257
Period size: 71 Copynumber: 2.0 Consensus size: 71
24679 AAGGGCCATG
*
24689 CTGATTCAAGGCCAACGATATTGACTTAAAGATAACAAAGGTGCCAATATGCTAATTCAAGGCCA
1 CTGATACAAGGCCAACGATATTGACTTAAAGATAACAAAGGTGCCAATATGCTAATTCAAGGCCA
24754 GTGATA
66 GTGATA
* *
24760 CTGATACAAGGCCAGCGATATTGACTTAAAGATAACAAAGGTGCCAATATGCTAATTCAAGGCTA
1 CTGATACAAGGCCAACGATATTGACTTAAAGATAACAAAGGTGCCAATATGCTAATTCAAGGCCA
24825 GTGATA
66 GTGATA
24831 TTAGACTTAA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 68 1.00
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (71 bp):
CTGATACAAGGCCAACGATATTGACTTAAAGATAACAAAGGTGCCAATATGCTAATTCAAGGCCA
GTGATA
Found at i:25160 original size:32 final size:32
Alignment explanation
Indices: 24948--25533 Score: 633
Period size: 33 Copynumber: 18.2 Consensus size: 32
24938 CATTAGGCTC
* * *
24948 AGAAGGAGATGCCACCGATTTGTGTGGGCTTT
1 AGAAGGGGTTGCCACCGACTTGTGTGGGCTTT
* *
24980 AGAA-AGGTTGCCACCGATTTGTGTGGGCTTT
1 AGAAGGGGTTGCCACCGACTTGTGTGGGCTTT
*
25011 AGAGGGGGATTGCCACCGACTTGTGTGGGCTTT
1 AGAAGGGG-TTGCCACCGACTTGTGTGGGCTTT
* *
25044 AGAGGAGGGTTGCCACCGACTTATGTGGGCTTT
1 AGAAG-GGGTTGCCACCGACTTGTGTGGGCTTT
*
25077 AGAGGGGGGTTGCCACCGACTTGTGTGGGCTTT
1 AGA-AGGGGTTGCCACCGACTTGTGTGGGCTTT
* * *
25110 AAAAGGGGGTTGCCACCAACTTGTATGGGCTTT
1 AGAA-GGGGTTGCCACCGACTTGTGTGGGCTTT
* * * * *
25143 AGAAGAGATTGCCACCAATTTGTGTGGACTTT
1 AGAAGGGGTTGCCACCGACTTGTGTGGGCTTT
* *
25175 AGAGTGGGGTTGCCACCGACTTGTGTGAGCTTT
1 AGA-AGGGGTTGCCACCGACTTGTGTGGGCTTT
* * *
25208 AGAAGAGGTTGCCACCAAATTGTGTGGGCTTT
1 AGAAGGGGTTGCCACCGACTTGTGTGGGCTTT
* * * * *
25240 AGAGAAGCGTTGCCACTGACTTATGTGGGTTTT
1 AGA-AGGGGTTGCCACCGACTTGTGTGGGCTTT
* *
25273 AGAA-GGGTTGCCATCGACTTGTGTGAGCTTT
1 AGAAGGGGTTGCCACCGACTTGTGTGGGCTTT
* *
25304 AGAAAGGGGTTGCTACCGACTTGTATGGGCTTT
1 AG-AAGGGGTTGCCACCGACTTGTGTGGGCTTT
* *
25337 AGAAAGGGGTT-CCATCGACTTTTGTGGGCTTT
1 AG-AAGGGGTTGCCACCGACTTGTGTGGGCTTT
* *
25369 AGAGGGGGTTGCCACCAACTTGTGTGGGCTTT
1 AGAAGGGGTTGCCACCGACTTGTGTGGGCTTT
* ***
25401 AGAGGGGGTTGCCATTAACTTGTGTGGGCTTT
1 AGAAGGGGTTGCCACCGACTTGTGTGGGCTTT
** ** *
25433 AGAAGATGTTGCCACTAACCTGTGTGGGCTTT
1 AGAAGGGGTTGCCACCGACTTGTGTGGGCTTT
*
25465 AGAA-GGGTTGCCACCGACTTATGTGGGCTTT
1 AGAAGGGGTTGCCACCGACTTGTGTGGGCTTT
* *
25496 AGAA-GGGTTGCCACCAACTTATGTGGGCTTT
1 AGAAGGGGTTGCCACCGACTTGTGTGGGCTTT
*
25527 AAAAGGG
1 AGAAGGG
25534 AAAGGTGCCA
Statistics
Matches: 472, Mismatches: 71, Indels: 22
0.84 0.13 0.04
Matches are distributed among these distances:
31 111 0.24
32 162 0.34
33 194 0.41
34 5 0.01
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.30
Consensus pattern (32 bp):
AGAAGGGGTTGCCACCGACTTGTGTGGGCTTT
Found at i:25316 original size:64 final size:64
Alignment explanation
Indices: 24948--25533 Score: 598
Period size: 64 Copynumber: 9.1 Consensus size: 64
24938 CATTAGGCTC
* * *
24948 AGAAGGAGATGCCACCGATTTGTGTGGGCTTTAGAAA--GGTTGCCACCGATTTGTGTGGGCTTT
1 AGAAGG-GTTGCCACCGACTTGTGTGGGCTTTAGAAAGGGGTTGCCACCGACTTGTGTGGGCTTT
* * *
25011 AGAGGGGGATTGCCACCGACTTGTGTGGGCTTTAG-AGGAGGGTTGCCACCGACTTATGTGGGCT
1 AGA-AGGG-TTGCCACCGACTTGTGTGGGCTTTAGAAAG-GGGTTGCCACCGACTTGTGTGGGCT
25075 TT
63 TT
* * *
25077 AGAGGGGGGTTGCCACCGACTTGTGTGGGCTTTA-AAAGGGGGTTGCCACCAACTTGTATGGGCT
1 AGA--AGGGTTGCCACCGACTTGTGTGGGCTTTAGAAA-GGGGTTGCCACCGACTTGTGTGGGCT
25141 TT
63 TT
* * * * ** *
25143 AGAAGAGATTGCCACCAATTTGTGTGGACTTTAGAGTGGGGTTGCCACCGACTTGTGTGAGCTTT
1 AGAAG-GGTTGCCACCGACTTGTGTGGGCTTTAGAAAGGGGTTGCCACCGACTTGTGTGGGCTTT
* * * * * *
25208 AGAAGAGGTTGCCACCAAATTGTGTGGGCTTTAGAGAA-GCGTTGCCACTGACTTATGTGGGTTT
1 AGAAG-GGTTGCCACCGACTTGTGTGGGCTTTAGA-AAGGGGTTGCCACCGACTTGTGTGGGCTT
25272 T
64 T
* * * *
25273 AGAAGGGTTGCCATCGACTTGTGTGAGCTTTAGAAAGGGGTTGCTACCGACTTGTATGGGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAGGGGTTGCCACCGACTTGTGTGGGCTTT
* * * *
25337 AGAAAGGGGTT-CCATCGACTTTTGTGGGCTTTAG-AGGGGGTTGCCACCAACTTGTGTGGGCTT
1 AG-AA-GGGTTGCCACCGACTTGTGTGGGCTTTAGAAAGGGGTTGCCACCGACTTGTGTGGGCTT
25400 T
64 T
* *** ** ** *
25401 AGAGGGGGTTGCCATTAACTTGTGTGGGCTTTAG-AAGATGTTGCCACTAACCTGTGTGGGCTTT
1 AGA-AGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAGGGGTTGCCACCGACTTGTGTGGGCTTT
* * *
25465 AGAAGGGTTGCCACCGACTTATGTGGGCTTTAG-AA-GGGTTGCCACCAACTTATGTGGGCTTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAGGGGTTGCCACCGACTTGTGTGGGCTTT
*
25527 AAAAGGG
1 AGAAGGG
25534 AAAGGTGCCA
Statistics
Matches: 441, Mismatches: 66, Indels: 33
0.82 0.12 0.06
Matches are distributed among these distances:
62 28 0.06
63 40 0.09
64 151 0.34
65 130 0.29
66 86 0.20
67 6 0.01
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.30
Consensus pattern (64 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAGGGGTTGCCACCGACTTGTGTGGGCTTT
Found at i:25612 original size:33 final size:32
Alignment explanation
Indices: 25525--25716 Score: 162
Period size: 33 Copynumber: 6.1 Consensus size: 32
25515 TATGTGGGCT
** * *
25525 TTAAAAGGGAAAGGTGCCACAGAGTTTTGGAC
1 TTAAAAGAAAAAGGTGCCACGGAGTTGTGGAC
* * *
25557 TTAAAAG-----GGTGCTACGAAGTTGTAGAC
1 TTAAAAGAAAAAGGTGCCACGGAGTTGTGGAC
* *
25584 TTAAAAAAGAAAAAGGTG-CATGGAGTTGTGGAG
1 TT--AAAAGAAAAAGGTGCCACGGAGTTGTGGAC
* *
25617 TTAAAAGAAAAATGTGCCACGAAGTTGTGGAC
1 TTAAAAGAAAAAGGTGCCACGGAGTTGTGGAC
* * *
25649 TCGAAAAGAAAAGGGTGCCACAGAGTTGTGGAC
1 T-TAAAAGAAAAAGGTGCCACGGAGTTGTGGAC
* *
25682 TTTAAAAGAATAAGGTGCCACGAAGTTGTGGAC
1 -TTAAAAGAAAAAGGTGCCACGGAGTTGTGGAC
25715 TT
1 TT
25717 TGAAAGGGTG
Statistics
Matches: 126, Mismatches: 24, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
27 17 0.13
29 5 0.04
31 13 0.10
32 22 0.17
33 64 0.51
34 5 0.04
ACGTcount: A:0.37, C:0.11, G:0.30, T:0.22
Consensus pattern (32 bp):
TTAAAAGAAAAAGGTGCCACGGAGTTGTGGAC
Found at i:25706 original size:66 final size:64
Alignment explanation
Indices: 25534--25715 Score: 203
Period size: 65 Copynumber: 2.9 Consensus size: 64
25524 TTTAAAAGGG
* * *
25534 AAAGGTGCCACAGAGTTTTGGACTTAAAAG----GGTGCTACGAAGTTGTAGACTTAAAAAAGAA
1 AAAGGTGCCACAGAGTTGTGGACTTAAAAGAAAAGGTGCCACGAAGTTGTGGAC-TAAAAAAGAA
** * * **
25595 AAAGGTG-CATGGAGTTGTGGAGTTAAAAGAAAAATGTGCCACGAAGTTGTGGACTCGAAAAGAA
1 AAAGGTGCCACAGAGTTGTGGACTTAAAAG-AAAAGGTGCCACGAAGTTGTGGACTAAAAAAGAA
*
25659 AAGGGTGCCACAGAGTTGTGGACTTTAAAAGAATAAGGTGCCACGAAGTTGTGGACT
1 AAAGGTGCCACAGAGTTGTGGAC-TTAAAAGAA-AAGGTGCCACGAAGTTGTGGACT
25716 TTGAAAGGGT
Statistics
Matches: 99, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
60 18 0.18
61 7 0.07
64 14 0.14
65 31 0.31
66 29 0.29
ACGTcount: A:0.37, C:0.12, G:0.30, T:0.22
Consensus pattern (64 bp):
AAAGGTGCCACAGAGTTGTGGACTTAAAAGAAAAGGTGCCACGAAGTTGTGGACTAAAAAAGAA
Found at i:25717 original size:33 final size:33
Alignment explanation
Indices: 25559--25722 Score: 172
Period size: 33 Copynumber: 5.0 Consensus size: 33
25549 TTTTGGACTT
* * * *
25559 AAAAGGGTGCTACGAAGTTGTAGACTTAAAAAAG
1 AAAAAGGTGCCACGAAGTTGTGGACTT-TAAAAG
* * *
25593 AAAAAGGTG-CATGGAGTTGTGGA-GTTAAAAG
1 AAAAAGGTGCCACGAAGTTGTGGACTTTAAAAG
* **
25624 AAAAATGTGCCACGAAGTTGTGGACTCGAAAAG
1 AAAAAGGTGCCACGAAGTTGTGGACTTTAAAAG
*
25657 AAAAGGGTGCCAC-AGAGTTGTGGACTTTAAAAG
1 AAAAAGGTGCCACGA-AGTTGTGGACTTTAAAAG
* *
25690 AATAAGGTGCCACGAAGTTGTGGACTTTGAAAG
1 AAAAAGGTGCCACGAAGTTGTGGACTTTAAAAG
25723 GGTGCCACGA
Statistics
Matches: 106, Mismatches: 20, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
31 13 0.12
32 14 0.13
33 70 0.66
34 9 0.08
ACGTcount: A:0.38, C:0.10, G:0.30, T:0.21
Consensus pattern (33 bp):
AAAAAGGTGCCACGAAGTTGTGGACTTTAAAAG
Found at i:25732 original size:28 final size:29
Alignment explanation
Indices: 25630--25750 Score: 93
Period size: 33 Copynumber: 3.9 Consensus size: 29
25620 AAAGAAAAAT
**
25630 GTGCCACGAAGTTGTGGACTCGAAAAGAAAAGG
1 GTGCCACGAAGTTGTGGACT---TTAG-AAAGG
*
25663 GTGCCAC-AGAGTTGTGGACTTTAAAAGAATAAG
1 GTGCCACGA-AGTTGTGGACTTT---AGAA-AGG
25696 GTGCCACGAAGTTGTGGACTTT-GAAAGG
1 GTGCCACGAAGTTGTGGACTTTAGAAAGG
* * *
25724 GTGCCACGAAGCTGTGAACTTTCGAAA
1 GTGCCACGAAGTTGTGGACTTTAGAAA
25751 AATGATGCCA
Statistics
Matches: 75, Mismatches: 6, Indels: 18
0.76 0.06 0.18
Matches are distributed among these distances:
28 22 0.29
29 7 0.09
32 3 0.04
33 42 0.56
34 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.31, T:0.21
Consensus pattern (29 bp):
GTGCCACGAAGTTGTGGACTTTAGAAAGG
Found at i:25940 original size:31 final size:30
Alignment explanation
Indices: 25845--25964 Score: 95
Period size: 31 Copynumber: 4.0 Consensus size: 30
25835 TAGAAGAAAA
* * *
25845 AGATGTCAGTGAGTCGTAGACTTT-AGAAG
1 AGATGCCACTGAGTCATAGACTTTAAGAAG
* *
25874 TG-TGCCA-TAGAGTCA-AGGACTTTAAAAAG
1 AGATGCCACT-GAGTCATA-GACTTTAAGAAG
*
25903 ATATGCCACTGAGTCATAGACTTTTAAGAAG
1 AGATGCCACTGAGTCATAGAC-TTTAAGAAG
* **
25934 AGATGCCACTGAATGGTAGACTTTGAAGAAG
1 AGATGCCACTGAGTCATAGACTTT-AAGAAG
25965 GAAAAAGATT
Statistics
Matches: 72, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
27 2 0.03
28 15 0.21
29 5 0.07
30 17 0.24
31 33 0.46
ACGTcount: A:0.35, C:0.13, G:0.26, T:0.26
Consensus pattern (30 bp):
AGATGCCACTGAGTCATAGACTTTAAGAAG
Found at i:34499 original size:34 final size:32
Alignment explanation
Indices: 34437--34499 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
34427 TAGCCAAACT
**
34437 TGTATCGATACACAAAGTATGTATCGATAGAA
1 TGTATCGATACACAAAAAATGTATCGATAGAA
34469 TGTATCGATACACAAAAAAATTGTATCGATA
1 TGTATCGATACAC-AAAAAA-TGTATCGATA
34500 CATTGGCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 13 0.48
33 4 0.15
34 10 0.37
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.29
Consensus pattern (32 bp):
TGTATCGATACACAAAAAATGTATCGATAGAA
Found at i:38567 original size:15 final size:15
Alignment explanation
Indices: 38547--38577 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
38537 TAAAAATGTC
*
38547 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
38562 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
38577 C
1 C
38578 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:40677 original size:13 final size:13
Alignment explanation
Indices: 40659--40696 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
40649 CATTTTTCTT
40659 TGTATCGATACAA
1 TGTATCGATACAA
*
40672 TGTATCGATACAC
1 TGTATCGATACAA
40685 TGTATCGATACA
1 TGTATCGATACA
40697 GGGGGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:40851 original size:20 final size:20
Alignment explanation
Indices: 40808--40853 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
40798 AAATCTTTTG
40808 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
40829 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
40849 CAAAA
1 CAAAA
40854 CCAACATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:42346 original size:22 final size:20
Alignment explanation
Indices: 42304--42346 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
42294 ATGTTTAATG
**
42304 TATTTGCTTGACTTTGTGTT
1 TATTTGCTTGACTTTAAGTT
42324 TATTTGCATTGTACTTTAAGTT
1 TATTTGC-TTG-ACTTTAAGTT
42346 T
1 T
42347 TAATCTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 3 0.16
22 9 0.47
ACGTcount: A:0.16, C:0.09, G:0.16, T:0.58
Consensus pattern (20 bp):
TATTTGCTTGACTTTAAGTT
Found at i:42522 original size:45 final size:45
Alignment explanation
Indices: 42458--42547 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
42448 AAAGGGGGAG
42458 AGAATAGATGTATGTATGTGCAAATAAATTTTTGATATTACCTTA
1 AGAATAGATGTATGTATGTGCAAATAAATTTTTGATATTACCTTA
42503 AGAATAGATGTATGTATGTGCAAATAAATTTTTGATATTACCTTA
1 AGAATAGATGTATGTATGTGCAAATAAATTTTTGATATTACCTTA
42548 TTAAGGGGGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.40
Consensus pattern (45 bp):
AGAATAGATGTATGTATGTGCAAATAAATTTTTGATATTACCTTA
Found at i:43306 original size:13 final size:13
Alignment explanation
Indices: 43288--43313 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
43278 TACACAAAGT
43288 ATGTATCGATACA
1 ATGTATCGATACA
43301 ATGTATCGATACA
1 ATGTATCGATACA
43314 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:43332 original size:34 final size:32
Alignment explanation
Indices: 43270--43334 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
43260 TAGCCAAACT
**
43270 TGTATCGATACACAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAAATGTATCGATACAA
43302 TGTATCGATACACAAAAAAATTGTATCGATACA
1 TGTATCGATACAC-AAAAAA-TGTATCGATACA
43335 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 13 0.45
33 4 0.14
34 12 0.41
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (32 bp):
TGTATCGATACACAAAAAATGTATCGATACAA
Found at i:46067 original size:33 final size:33
Alignment explanation
Indices: 45998--46067 Score: 79
Period size: 33 Copynumber: 2.1 Consensus size: 33
45988 CTACCACTGT
* *
45998 TTGTATCGATACAAGACACATTGTATCCATATA
1 TTGTATCGATACAAGACAAATTGTATCCATACA
* * *
46031 TTGTATCGATACATGA-AGAATTGTTTCGATACA
1 TTGTATCGATACAAGACA-AATTGTATCCATACA
46064 TTGT
1 TTGT
46068 CCCAACGGCT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
32 1 0.03
33 30 0.97
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (33 bp):
TTGTATCGATACAAGACAAATTGTATCCATACA
Found at i:47682 original size:20 final size:20
Alignment explanation
Indices: 47637--47688 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
47627 GTAGCCAAAC
**
47637 TTGTATCGATACACAAAGTA
1 TTGTATCGATACACAAAAAA
47657 -TGTATCGATACACAAAAAA
1 TTGTATCGATACACAAAAAA
47676 TTGTATCGATACA
1 TTGTATCGATACA
47689 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.29
Consensus pattern (20 bp):
TTGTATCGATACACAAAAAA
Found at i:53189 original size:20 final size:21
Alignment explanation
Indices: 53166--53220 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
53156 ACAATTCAAA
* *
53166 GTATCGATACATGTTACA-AT
1 GTATCGATACATGTAAAAGAT
*
53186 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTAAAAGAT
53207 GTATCGATACATGT
1 GTATCGATACATGT
53221 CATTGGGATT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 15 0.50
21 15 0.50
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (21 bp):
GTATCGATACATGTAAAAGAT
Found at i:53294 original size:20 final size:20
Alignment explanation
Indices: 53249--53300 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
53239 GTAGCCAAAC
**
53249 TTGTATCGATACACAAAGTA
1 TTGTATCGATACACAAAAAA
53269 -TGTATCGATACACAAAAAA
1 TTGTATCGATACACAAAAAA
53288 TTGTATCGATACA
1 TTGTATCGATACA
53301 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.29
Consensus pattern (20 bp):
TTGTATCGATACACAAAAAA
Found at i:58912 original size:20 final size:20
Alignment explanation
Indices: 58867--58918 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
58857 GTAGCCAAAC
**
58867 TTGTATCGATACACAAAGTA
1 TTGTATCGATACACAAAAAA
58887 -TGTATCGATACACAAAAAA
1 TTGTATCGATACACAAAAAA
58906 TTGTATCGATACA
1 TTGTATCGATACA
58919 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.29
Consensus pattern (20 bp):
TTGTATCGATACACAAAAAA
Found at i:60090 original size:15 final size:15
Alignment explanation
Indices: 60070--60102 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
60060 AACCATCAAA
60070 GATGATGAAGATAAT
1 GATGATGAAGATAAT
*
60085 GATGATGATGATAAT
1 GATGATGAAGATAAT
60100 GAT
1 GAT
60103 AAAGTTGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.30
Consensus pattern (15 bp):
GATGATGAAGATAAT
Found at i:61320 original size:24 final size:24
Alignment explanation
Indices: 61288--61335 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
61278 GTGACAACTT
61288 GAAAGGAAAAATCGAAAGAATCGG
1 GAAAGGAAAAATCGAAAGAATCGG
61312 GAAAGGAAAAATCGAAAGAATCGG
1 GAAAGGAAAAATCGAAAGAATCGG
61336 CACCTTGGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.08, G:0.29, T:0.08
Consensus pattern (24 bp):
GAAAGGAAAAATCGAAAGAATCGG
Found at i:68396 original size:21 final size:20
Alignment explanation
Indices: 68371--68423 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
68361 TACAAGCCAA
**
68371 TGTATCGATACAATTTTTTGG
1 TGTATCGATACAA-TACTTGG
68392 TGTATCGATAC-ATACTTGG
1 TGTATCGATACAATACTTGG
68411 TGTATCGATACAA
1 TGTATCGATACAA
68424 GTTTGGCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 16 0.55
20 2 0.07
21 11 0.38
ACGTcount: A:0.28, C:0.13, G:0.19, T:0.40
Consensus pattern (20 bp):
TGTATCGATACAATACTTGG
Found at i:68429 original size:19 final size:18
Alignment explanation
Indices: 68371--68429 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 18
68361 TACAAGCCAA
68371 TGTATCGATACAATTTTTTGG
1 TGTATCGATACAA---TTTGG
*
68392 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
68411 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
68430 CTACTGCCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
18 1 0.03
19 20 0.59
21 12 0.35
22 1 0.03
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:70495 original size:21 final size:20
Alignment explanation
Indices: 70466--70508 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
70456 GGCTAGTGTA
*
70466 GGGACTGCCCGGTTGCGACCT
1 GGGACTG-CCGGTCGCGACCT
*
70487 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
70507 GG
1 GG
70509 TGGTGCTGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.09, C:0.30, G:0.44, T:0.16
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:70966 original size:13 final size:13
Alignment explanation
Indices: 70948--70985 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
70938 ATAATCCCCC
70948 TGTATCGATACAG
1 TGTATCGATACAG
*
70961 TGTATCGATACAT
1 TGTATCGATACAG
70974 TGTATCGATACA
1 TGTATCGATACA
70986 AAGAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Done.