Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold193
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3104049
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.32
Warning! 172765 characters in sequence are not A, C, G, or T
File 1 of 18
Found at i:935 original size:13 final size:13
Alignment explanation
Indices: 917--942 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
907 TATAACCCCC
917 TGTATCGATACAA
1 TGTATCGATACAA
930 TGTATCGATACAA
1 TGTATCGATACAA
943 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3059 original size:15 final size:15
Alignment explanation
Indices: 3031--3066 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
3021 ATCAATTTCG
3031 TTTGGAGCTTCTTAT
1 TTTGGAGCTTCTTAT
3046 TTTGG-GCTTCCTTAT
1 TTTGGAGCTT-CTTAT
3061 TTTGGA
1 TTTGGA
3067 CATTTTTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.11, C:0.14, G:0.22, T:0.53
Consensus pattern (15 bp):
TTTGGAGCTTCTTAT
Found at i:7076 original size:20 final size:22
Alignment explanation
Indices: 7046--7089 Score: 74
Period size: 20 Copynumber: 2.1 Consensus size: 22
7036 TGATTTCCCG
7046 TGTGAATGTATCGATACA-ATT
1 TGTGAATGTATCGATACATATT
7067 TGTG-ATGTATCGATACATATT
1 TGTGAATGTATCGATACATATT
7088 TG
1 TG
7090 AAAAATATAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (22 bp):
TGTGAATGTATCGATACATATT
Found at i:7162 original size:13 final size:13
Alignment explanation
Indices: 7144--7169 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7134 CAATTTTTTG
7144 TGTATCGATACAT
1 TGTATCGATACAT
7157 TGTATCGATACAT
1 TGTATCGATACAT
7170 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7184 original size:32 final size:33
Alignment explanation
Indices: 7124--7185 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
7114 TACAAGCCAA
** *
7124 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
7157 TGTATCGATAC-ATACTTGGTGTATCGATA
1 TGTATCGATACAATACTTGGTGTATCGATA
7186 TAAGTTTGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 15 0.58
33 11 0.42
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:7264 original size:20 final size:20
Alignment explanation
Indices: 7218--7291 Score: 87
Period size: 20 Copynumber: 3.6 Consensus size: 20
7208 TTCCCAATGA
***
7218 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGAAT
7239 CATGTATCGATACATTGCAA-
1 CATGTATCGATACATTG-AAT
*
7259 CATGTATCGATACTTTGAAT
1 CATGTATCGATACATTGAAT
7279 CATGTATCGATAC
1 CATGTATCGATAC
7292 TTTTAAGGGT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
19 2 0.04
20 30 0.64
21 15 0.32
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (20 bp):
CATGTATCGATACATTGAAT
Found at i:7292 original size:20 final size:21
Alignment explanation
Indices: 7238--7294 Score: 91
Period size: 20 Copynumber: 2.8 Consensus size: 21
7228 TACATCTTTT
*
7238 TCATGTATCGATACATTGCAA
1 TCATGTATCGATACTTTGCAA
7259 -CATGTATCGATACTTTG-AA
1 TCATGTATCGATACTTTGCAA
7278 TCATGTATCGATACTTT
1 TCATGTATCGATACTTT
7295 TAAGGGTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
19 2 0.06
20 32 0.94
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (21 bp):
TCATGTATCGATACTTTGCAA
Found at i:9077 original size:13 final size:13
Alignment explanation
Indices: 9059--9083 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9049 ACATGCACAT
9059 TGTATCGATACAA
1 TGTATCGATACAA
9072 TGTATCGATACA
1 TGTATCGATACA
9084 TGAAAAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:9099 original size:33 final size:32
Alignment explanation
Indices: 9040--9103 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
9030 GACCACTAAT
* *
9040 TGTATCGATACATGCACATTGTATCGATACAA
1 TGTATCGATACATGAAAATTGTATCGATACAA
9072 TGTATCGATACATGAAAAATTGTATCGATACA
1 TGTATCGATACATG-AAAATTGTATCGATACA
9104 TTGACTCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (32 bp):
TGTATCGATACATGAAAATTGTATCGATACAA
Found at i:16821 original size:33 final size:33
Alignment explanation
Indices: 16779--16847 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
16769 AGTTGATCAC
* *
16779 TTCACTTTCGTAGTGCATGGATGAGCACTTTAG
1 TTCACTTTCGTAGCGCATGGATGAGAACTTTAG
*
16812 TTCACTTTCGTAGCGTATGGATGAGAACTTTAG
1 TTCACTTTCGTAGCGCATGGATGAGAACTTTAG
16845 TTC
1 TTC
16848 TCTTAACCGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.38
Consensus pattern (33 bp):
TTCACTTTCGTAGCGCATGGATGAGAACTTTAG
Found at i:17670 original size:22 final size:21
Alignment explanation
Indices: 17623--17675 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
17613 CAATTTCAAT
*
17623 AAATGTTTTTGAGTTATGAAC
1 AAATGTTTTTGAGTTATAAAC
17644 AAATGTTTTTGAGCTT-TAAATC
1 AAATGTTTTTGAG-TTATAAA-C
*
17666 GAATGTTTTT
1 AAATGTTTTT
17676 AAGTAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 16 0.57
22 12 0.43
ACGTcount: A:0.30, C:0.06, G:0.17, T:0.47
Consensus pattern (21 bp):
AAATGTTTTTGAGTTATAAAC
Found at i:20489 original size:87 final size:86
Alignment explanation
Indices: 20351--20896 Score: 365
Period size: 87 Copynumber: 6.2 Consensus size: 86
20341 CTCTAACCTA
* * *
20351 GCTCTTCAAAAAAAATCAAAATTTTCTTCGA-ATAATTTTAACTTTAGGGAAACTCCATCCTCAC
1 GCTCTTCAAAAAAAATCAAATTTTTCTTC-ATATAATTTTATCTTTA-GGAAACTCCATCCCCAC
*
20415 TCCTCCGAGAGCACACTCTAACCC
64 TCCTCCGAGAG-ACACTCCAACCC
* * ** * * *
20439 GCTCTT-GAAAAAGATCAAATTTTTCTTTGTATAATTTTATTTTTAAGGAAACTTCATCTCCACT
1 GCTCTTCAAAAAAAATCAAATTTTTCTTCATATAATTTTATCTTT-AGGAAACTCCATCCCCACT
** *
20503 CCT-CTTGAGATACTCCAATCCC
65 CCTCCGAGAGACACTCCAA-CCC
* * * *
20525 GCTCTTCAAAAAAAATCAAATTTTTCTTTACATAATTTTATTTTTGGGAAAACTCCATCCCCACT
1 GCTCTTCAAAAAAAATCAAATTTTTCTTCATATAATTTTATCTTTAGG-AAACTCCATCCCCACT
* *
20590 CCTCTGAGGGGGACACTCCAACCC
65 CCTCCGA--GAGACACTCCAACCC
**
20614 TGCTCTTC-AAAAAAATTTAATTTTTCTTCATATAATTTTATCTTTAGAGAAACTCCATCCCCAC
1 -GCTCTTCAAAAAAAATCAAATTTTTCTTCATATAATTTTATCTTTAG-GAAACTCCATCCCCAC
* ** * * *
20678 TCTTTCAAAGGGACACTCTAGCCCC
64 TC-CTCCGAGAGACACTCCA-ACCC
* * * * * *
20703 ACTTTTCAAAAAAAAAAATCAAA-TTTTCATCCGTGA-AATTTTATTTTTAGGGAAACTTCATCC
1 GCTCTTC---AAAAAAAATCAAATTTTTC-TTCAT-ATAATTTTATCTTTA-GGAAACTCCATCC
* * * **
20766 CCACTCCTCTGAGAGGATACTCTAATCTT
60 CCACTCCTCCGAGA-GACACTCCAA-CCC
* * * * * *
20795 GTTCTTC---AAAAATCAAAATTTTCTTCATATAATTTTATCTTTGGGGAAACACTATCCCCATT
1 GCTCTTCAAAAAAAATCAAATTTTTCTTCATATAATTTTATCTTT-AGGAAACTCCATCCCCACT
* * *
20857 CCTTCGAAAGAATACTCCAACCC
65 CCTCCGAGAG-ACACTCCAACCC
*
20880 -CATTCTTCATAAAAAAT
1 GC--TCTTCAAAAAAAAT
20897 TTAAAAATTA
Statistics
Matches: 357, Mismatches: 71, Indels: 59
0.73 0.15 0.12
Matches are distributed among these distances:
85 10 0.03
86 72 0.20
87 104 0.29
88 22 0.06
89 62 0.17
90 21 0.06
91 9 0.03
92 55 0.15
93 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.09, T:0.34
Consensus pattern (86 bp):
GCTCTTCAAAAAAAATCAAATTTTTCTTCATATAATTTTATCTTTAGGAAACTCCATCCCCACTC
CTCCGAGAGACACTCCAACCC
Found at i:20592 original size:174 final size:176
Alignment explanation
Indices: 20351--20859 Score: 444
Period size: 178 Copynumber: 2.9 Consensus size: 176
20341 CTCTAACCTA
*
20351 GCTCTTCAAAAAAAATCAAAATTTTCTTCGAATAATTTTAACTTTAGGGAAACTCCATCCTCACT
1 GCTCTTCAAAAAAAATCAAAATTTTCTTCGAATAATTTTAACTTTAGGGAAACTCCATCCCCACT
* * * **
20416 CCTCCGA-GAGCACACTCTAACCC-GCTCTTGAAAAAGATCAAATTTTTCTTTGTATAATTTTAT
66 CCTCCGAGGAGCACACTCCAACCCTGCTCTTCAAAAAAATCAAATTTTTCTTCATATAATTTTAT
* * *
20479 TTTTA-AGGAAACTTCATCTCCACTCCTCTTGAGATACTCCAATCCC
131 CTTTAGA-GAAACTCCATCCCCACTCCTCTTGAGATACTCCAATCCC
* * * *
20525 GCTCTTCAAAAAAAATCAAATTTTTCTT-TACATAATTTT-ATTTTTGGGAAAACTCCATCCCCA
1 GCTCTTCAAAAAAAATCAAAATTTTCTTCGA-ATAATTTTAACTTTAGGG-AAACTCCATCCCCA
* * * **
20588 CTCCTCTGAGGGGGACACTCCAACCCTGCTCTTCAAAAAAATTTAATTTTTCTTCATATAATTTT
64 CTCCTCCGAGGAGCACACTCCAACCCTGCTCTTCAAAAAAATCAAATTTTTCTTCATATAATTTT
* ** * * * **
20653 ATCTTTAGAGAAACTCCATCCCCACTCTTTCAAAGGGACACTCTAGCCCC
129 ATCTTTAGAGAAACTCCATCCCCACTC-CTC-TTGAGATACTCCAATCCC
* * * * ** *
20703 ACTTTTCAAAAAAAAAAATC-AAATTTTCATCCGTGA-AATTTTATTTTTAGGGAAACTTCATCC
1 GCTCTTC---AAAAAAAATCAAAATTTTC-TTCG-AATAATTTTAACTTTAGGGAAACTCCATCC
* * * * * * * *
20766 CCACTCCTCTGA-GAGGATACTCTAATCTTGTTCTTC--AAAAATCAAAATTTTCTTCATATAAT
61 CCACTCCTCCGAGGAGCACACTCCAACCCTGCTCTTCAAAAAAATCAAATTTTTCTTCATATAAT
* * * * *
20828 TTTATCTTTGGGGAAACACTATCCCCATTCCT
126 TTTATCTTTAGAGAAACTCCATCCCCACTCCT
20860 TCGAAAGAAT
Statistics
Matches: 271, Mismatches: 50, Indels: 25
0.78 0.14 0.07
Matches are distributed among these distances:
173 8 0.03
174 56 0.21
175 13 0.05
176 54 0.20
177 4 0.01
178 64 0.24
180 25 0.09
181 39 0.14
182 8 0.03
ACGTcount: A:0.32, C:0.24, G:0.09, T:0.35
Consensus pattern (176 bp):
GCTCTTCAAAAAAAATCAAAATTTTCTTCGAATAATTTTAACTTTAGGGAAACTCCATCCCCACT
CCTCCGAGGAGCACACTCCAACCCTGCTCTTCAAAAAAATCAAATTTTTCTTCATATAATTTTAT
CTTTAGAGAAACTCCATCCCCACTCCTCTTGAGATACTCCAATCCC
Found at i:21224 original size:231 final size:235
Alignment explanation
Indices: 20822--21291 Score: 696
Period size: 231 Copynumber: 2.0 Consensus size: 235
20812 ATTTTCTTCA
* *
20822 TATAATTTTATCTTTGGGGAAACACTATCCCCATTCCTTCGAAAGAATACTCCAACCCCATTCTT
1 TATAATTTTATCTTTGGGGAAACACTATCACCACTCCTTCGAAAGAATACT-----CCCATTCTT
*
20887 CATAAAAAATTTAAAAATTAAATTTCCTTTTTGCTCTTAAATATTTATATCTCCAAGGATACTCC
61 CATAAAAAATTTAAAAATCAAATTTCCTTTTTGCTCTTAAATATTTATATCTCCAAGGATACTCC
*
20952 AACCCCACCTTTCTAAGGGGATATTCCAGCCCCACTTTGACTAAAAATAAACAATTTGAAAATTT
126 AACCCCACCTCTCTAAGGGGATATTCCAGCCCCACTTTGACTAAAAATAAACAATTTGAAAATTT
* * * *
21017 TTCTTTTCCGGATTTCTTGGATGGTTTTGATT-AAATTTTTTTTG
191 TCCTTTTCCGGATGTCTCGGATGGTTTTGATTAAAATCTTTTTTG
* * **
21061 TATAATTTTATCTTTGGGGAAACTCTATCACCACTCTTTCGAGGGAATACT-CCA-TCTTCA-AA
1 TATAATTTTATCTTTGGGGAAACACTATCACCACTCCTTCGAAAGAATACTCCCATTCTTCATAA
** *
21123 AAAATTTAAAAATCAAATTTCCTTTTTGCTCTTAAATATTTATATCTCCGGGGATACTCCATCCC
66 AAAATTTAAAAATCAAATTTCCTTTTTGCTCTTAAATATTTATATCTCCAAGGATACTCCAACCC
* * * *
21188 CACCTCTCTAAGGGGATATTCCAGCCTCATTTTGACTTAAAATAAACGATTTGAAAATTTTCCTT
131 CACCTCTCTAAGGGGATATTCCAGCCCCACTTTGACTAAAAATAAACAATTTGAAAATTTTCCTT
21253 TTCCGGATGTCTCGGATGGTTTTGATTAAAATCTTTTTT
196 TTCCGGATGTCTCGGATGGTTTTGATTAAAATCTTTTTT
21292 CTTTTTTTTC
Statistics
Matches: 211, Mismatches: 19, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
231 147 0.70
232 16 0.08
233 3 0.01
239 45 0.21
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (235 bp):
TATAATTTTATCTTTGGGGAAACACTATCACCACTCCTTCGAAAGAATACTCCCATTCTTCATAA
AAAATTTAAAAATCAAATTTCCTTTTTGCTCTTAAATATTTATATCTCCAAGGATACTCCAACCC
CACCTCTCTAAGGGGATATTCCAGCCCCACTTTGACTAAAAATAAACAATTTGAAAATTTTCCTT
TTCCGGATGTCTCGGATGGTTTTGATTAAAATCTTTTTTG
Found at i:22850 original size:13 final size:13
Alignment explanation
Indices: 22832--22856 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22822 CATAAAATGT
22832 TGTATCGATACAA
1 TGTATCGATACAA
22845 TGTATCGATACA
1 TGTATCGATACA
22857 TATTTTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:22937 original size:13 final size:13
Alignment explanation
Indices: 22919--22943 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22909 ATTACTCAAA
22919 TGTATCGATACAT
1 TGTATCGATACAT
22932 TGTATCGATACA
1 TGTATCGATACA
22944 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:23007 original size:51 final size:52
Alignment explanation
Indices: 22952--23071 Score: 208
Period size: 52 Copynumber: 2.3 Consensus size: 52
22942 CACTGATCTT
*
22952 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACATT-TTAAAA
1 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACATTATT-AAA
23003 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACATTATTAAA
1 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACATTATTAAA
23055 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
23072 TAACTTTTCA
Statistics
Matches: 66, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
51 19 0.29
52 45 0.68
53 2 0.03
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACATTATTAAA
Found at i:29436 original size:13 final size:13
Alignment explanation
Indices: 29418--29453 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
29408 ATTTATGATG
*
29418 TATCGATACACTA
1 TATCGATACAATA
*
29431 TATCGATACAATG
1 TATCGATACAATA
29444 TATCGATACA
1 TATCGATACA
29454 TGAATAGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (13 bp):
TATCGATACAATA
Found at i:29543 original size:21 final size:21
Alignment explanation
Indices: 29518--29557 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
29508 CTATGAACAA
29518 TGATGTATCGATACATGAAAG
1 TGATGTATCGATACATGAAAG
29539 TGATGTATCGATACATGAA
1 TGATGTATCGATACATGAA
29558 CACTGATGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.30
Consensus pattern (21 bp):
TGATGTATCGATACATGAAAG
Found at i:29723 original size:20 final size:20
Alignment explanation
Indices: 29660--29730 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
29650 ACCAATGTCC
**
29660 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
29680 TGTATCGATAC-TATGCAATC
1 TGTATCGATACATAT-TAATG
29700 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
29720 TGTATCGATAC
1 TGTATCGATAC
29731 TTTTCAAGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:33067 original size:84 final size:84
Alignment explanation
Indices: 32912--33076 Score: 201
Period size: 84 Copynumber: 2.0 Consensus size: 84
32902 CATTTTCCAC
* * * *
32912 TTGCAACTCATTTCTTTTCTCCTCTAATTCATTTATTTTCTTTTTAAAAGAATTATTTTCTAAAC
1 TTGCAACTCATTTCTATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
32977 TCATTGATTTACTTTCATT
66 TCATTGATTTACTTTCATT
* *
32996 TTGCAACTC-TTTCATATTCTTCTCTAATTCACTTAATTTC-TTTT-CAAGAATATCATTCTCTA
1 TTGCAACTCATTTC-TATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAAT-T-ATTCTCTA
* * *
33058 CACTTATTGATTTATTTTC
63 AACTCATTGATTTACTTTC
33077 TTCTTTGAGT
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
82 6 0.09
83 9 0.13
84 54 0.78
ACGTcount: A:0.25, C:0.19, G:0.04, T:0.52
Consensus pattern (84 bp):
TTGCAACTCATTTCTATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
TCATTGATTTACTTTCATT
Found at i:34939 original size:13 final size:13
Alignment explanation
Indices: 34921--34945 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34911 ATTACTCACA
34921 TGTATCGATACAT
1 TGTATCGATACAT
34934 TGTATCGATACA
1 TGTATCGATACA
34946 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:35082 original size:52 final size:52
Alignment explanation
Indices: 34954--35074 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
34944 CACTGATCTT
*
34954 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
35006 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
35058 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
35075 ATAAATTTTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:37974 original size:34 final size:35
Alignment explanation
Indices: 37936--38002 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
37926 CCTTACAACA
37936 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
37970 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
38003 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:38493 original size:13 final size:13
Alignment explanation
Indices: 38475--38510 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
38465 ATTTATGATG
*
38475 TATCGATACACTA
1 TATCGATACAATA
*
38488 TATCGATACAATG
1 TATCGATACAATA
38501 TATCGATACA
1 TATCGATACA
38511 TGAATAGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (13 bp):
TATCGATACAATA
Found at i:38600 original size:21 final size:21
Alignment explanation
Indices: 38575--38614 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
38565 CTATGAACAA
38575 TGATGTATCGATACATGAAAG
1 TGATGTATCGATACATGAAAG
38596 TGATGTATCGATACATGAA
1 TGATGTATCGATACATGAA
38615 CACTGATGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.30
Consensus pattern (21 bp):
TGATGTATCGATACATGAAAG
Found at i:38760 original size:20 final size:21
Alignment explanation
Indices: 38737--38788 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
38727 CATATTTGTG
*
38737 TGTATCGATACTA-TGCAATC
1 TGTATCGATACTATTGAAATC
* *
38757 TGTATCGATA-TATTTAAATG
1 TGTATCGATACTATTGAAATC
38777 TGTATCGATACT
1 TGTATCGATACT
38789 TTTCAGGGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 2 0.07
20 24 0.89
21 1 0.04
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACTATTGAAATC
Found at i:43995 original size:13 final size:14
Alignment explanation
Indices: 43964--43994 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
43954 TTAAAATTTG
*
43964 AAAATTATTTTTTA
1 AAAATTATTTATTA
43978 AAAATTATTTATTA
1 AAAATTATTTATTA
43992 AAA
1 AAA
43995 TAAGTTACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AAAATTATTTATTA
Found at i:44879 original size:32 final size:33
Alignment explanation
Indices: 44820--44881 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
44810 CACCCAGATG
* *
44820 TATCGATACATATTGCTTAGTATCGATACATTA
1 TATCGATACATATTGCATAGTAGCGATACATTA
*
44853 TATCGATACATGTT-CATAGTAGCGATACA
1 TATCGATACATATTGCATAGTAGCGATACA
44882 CCTTAAAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 13 0.50
33 13 0.50
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (33 bp):
TATCGATACATATTGCATAGTAGCGATACATTA
Found at i:46833 original size:56 final size:54
Alignment explanation
Indices: 46771--47290 Score: 304
Period size: 56 Copynumber: 9.3 Consensus size: 54
46761 TAGTTGAAAT
*
46771 GTTGAAATGGGCACCAAAATAAGCAAACCAAAAAGTAGCTAAG-AGGTATAGCTCTA
1 GTTGAAATTGGCACCAAAATAAG-AAACC-AAAAGTAGCT-AGTAGGTATAGCTCTA
* *
46827 GTTGAAATTGGCACCCAAATGAA-AAAGCCAAAAGTATCTAGTAGGTATAGCTCTA
1 GTTGAAATTGGCACCAAAAT-AAGAAA-CCAAAAGTAGCTAGTAGGTATAGCTCTA
* * * *
46882 GTTAAAATTGGCACCAAAATAAGAAAACCTAAAATTAGTTGGTAGGTATAGCTCTA
1 GTTGAAATTGGCACCAAAATAAG-AAACC-AAAAGTAGCTAGTAGGTATAGCTCTA
* * * * *
46938 GTTGAAATTGACATCAAATTGAA-AAGCTTCAAAAGTAGCTTGTAGGTATAGCTCTA
1 GTTGAAATTGGCACCAAAAT-AAGAAAC--CAAAAGTAGCTAGTAGGTATAGCTCTA
* * * * * * * *
46994 GTCGAAACTAGCACCAAATTAAAAAAGCCTAAAAGTATCTAGTGGGTATA-CTCCCA
1 GTTGAAATTGGCACCAAAATAAGAAA-CC-AAAAGTAGCTAGTAGGTATAGCT-CTA
* * * * * * * *
47050 GTTAAAATTAGCACCCAAATTATAAAGCCTAAAAGTAGTTAG-CGAGAATAGCTCTA
1 GTTGAAATTGGCACCAAAATAAGAAA-CC-AAAAGTAGCTAGTAG-GTATAGCTCTA
* * * * *
47106 TTTAAAATTGGCACCAAAATGAA-AAGGCTTAAAAATAG-TAAGTAAGG-ATAGCTCTA
1 GTTGAAATTGGCACCAAAAT-AAGAA-AC-CAAAAGTAGCT-AGT-AGGTATAGCTCTA
* * * * *
47162 ATTAAAATTGGCA-TATAAATGAA-AAAGCCCAAAAGTGGCTAGTAGGGATAGCTCTA
1 GTTGAAATTGGCACCA-AAAT-AAGAAA--CCAAAAGTAGCTAGTAGGTATAGCTCTA
* * * * * * * * *
47218 ATTGAAATTAGAACCCAACTGAGAAAACCCAAAAGTAGCTAGTGGGGATAGCTCCA
1 GTTGAAATTGGCACCAAAATAAG-AAA-CCAAAAGTAGCTAGTAGGTATAGCTCTA
47274 GTTGAAATTGGCACCAA
1 GTTGAAATTGGCACCAA
47291 GATGAAAAAG
Statistics
Matches: 368, Mismatches: 67, Indels: 58
0.75 0.14 0.12
Matches are distributed among these distances:
54 4 0.01
55 60 0.16
56 288 0.78
57 15 0.04
58 1 0.00
ACGTcount: A:0.42, C:0.15, G:0.19, T:0.23
Consensus pattern (54 bp):
GTTGAAATTGGCACCAAAATAAGAAACCAAAAGTAGCTAGTAGGTATAGCTCTA
Found at i:47159 original size:168 final size:167
Alignment explanation
Indices: 46799--47298 Score: 413
Period size: 168 Copynumber: 3.0 Consensus size: 167
46789 ATAAGCAAAC
* * * *
46799 CAAAAAGTAGCTAAG-AGGTATAGCTCTAGTTGAAATTGGCACCCAAATGAAAAAGCCAAAAGTA
1 CAAAAA-TAGCT-AGTAGGTATAGCTCTAGTCGAAACTAGCACCCAAATAAAAAAGCCAAAAGTA
* * *
46863 TCTAGTAGGTATAGCTCTAGTTAAAATTGGCACCAAAATAAGAAAACCTAAAATTAGTTGGTAGG
64 TCTAGTAGGTATAGCTCCAGTTAAAATTAGCACCAAAATAAGAAAACCTAAAAGTAGTTGGTAGG
* * * *
46928 TATAGCTCTAGTTGAAATTGACATCAAATTGAAAAGCTT
129 AATAGCTCTAGTTAAAATTGACACCAAAATGAAAAGCTT
* *
46967 CAAAAGTAGCTTGTAGGTATAGCTCTAGTCGAAACTAGCA-CCAAATTAAAAAAGCCTAAAAGTA
1 CAAAAATAGCTAGTAGGTATAGCTCTAGTCGAAACTAGCACCCAAA-TAAAAAAGCC-AAAAGTA
* * * * *
47031 TCTAGTGGGTATA-CTCCCAGTTAAAATTAGCACCCAAATTATAAAGCCTAAAAGTAGTTAGCG-
64 TCTAGTAGGTATAGCT-CCAGTTAAAATTAGCACCAAAATAAGAAAACCTAAAAGTAGTT-G-GT
* *
47094 A-GAATAGCTCTATTTAAAATTGGCACCAAAATGAAAAGGCTT
126 AGGAATAGCTCTAGTTAAAATTGACACCAAAATGAAAA-GCTT
* ** * * *** *
47136 -AAAAATAG-TAAGTAAGG-ATAGCTCTAATTAAAATTGGCATATAAATGAAAAAGCCCAAAAGT
1 CAAAAATAGCT-AGT-AGGTATAGCTCTAGTCGAAACTAGCACCCAAATAAAAAAG-CCAAAAGT
** * * * * * * * * * * * *
47198 GGCTAGTAGGGATAGCTCTAATTGAAATTAGAACCCAACTGAGAAAACCCAAAAGTAGCTAGTGG
63 ATCTAGTAGGTATAGCTCCAGTTAAAATTAGCACCAAAATAAGAAAACCTAAAAGTAGTTGGTAG
* * * * *
47263 GGATAGCTCCAGTTGAAATTGGCACCAAGATGAAAA
128 GAATAGCTCTAGTTAAAATTGACACCAAAATGAAAA
47299 AGCCTAATGT
Statistics
Matches: 267, Mismatches: 51, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
166 7 0.03
167 40 0.15
168 203 0.76
169 16 0.06
170 1 0.00
ACGTcount: A:0.42, C:0.15, G:0.19, T:0.24
Consensus pattern (167 bp):
CAAAAATAGCTAGTAGGTATAGCTCTAGTCGAAACTAGCACCCAAATAAAAAAGCCAAAAGTATC
TAGTAGGTATAGCTCCAGTTAAAATTAGCACCAAAATAAGAAAACCTAAAAGTAGTTGGTAGGAA
TAGCTCTAGTTAAAATTGACACCAAAATGAAAAGCTT
Found at i:48010 original size:21 final size:21
Alignment explanation
Indices: 47986--48026 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
47976 AAAATAGTAG
*
47986 GATTTT-TAATTAAATTTTTAA
1 GATTTTCT-ATTAAACTTTTAA
48007 GATTTTCTATTAAACTTTTA
1 GATTTTCTATTAAACTTTTA
48027 CTTAAGGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (21 bp):
GATTTTCTATTAAACTTTTAA
Found at i:49595 original size:20 final size:18
Alignment explanation
Indices: 49568--49623 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 18
49558 ACTGCCAGTT
*
49568 TCATGTATCGATACAATT
1 TCATGTATCGATACAATA
*
49586 TGCTATGTATCGATACCAAGA
1 T-C-ATGTATCGATA-CAATA
49607 TCATGTATCGATACAAT
1 TCATGTATCGATACAAT
49624 GTATCGATAC
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
18 4 0.12
19 12 0.38
20 12 0.38
21 4 0.12
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (18 bp):
TCATGTATCGATACAATA
Found at i:49627 original size:13 final size:13
Alignment explanation
Indices: 49609--49635 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
49599 TACCAAGATC
49609 ATGTATCGATACA
1 ATGTATCGATACA
49622 ATGTATCGATACA
1 ATGTATCGATACA
49635 A
1 A
49636 AGCAATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:49631 original size:32 final size:32
Alignment explanation
Indices: 49590--49653 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
49580 ACAATTTGCT
*
49590 ATGTATCGATACCAAG-ATCATGTATCGATACA
1 ATGTATCGATACAAAGAAT-ATGTATCGATACA
49622 ATGTATCGATACAAAGCAATATGTATCGATAC
1 ATGTATCGATACAAAG-AATATGTATCGATAC
49654 TTATGGGTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 15 0.52
33 12 0.41
34 2 0.07
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (32 bp):
ATGTATCGATACAAAGAATATGTATCGATACA
Found at i:50293 original size:21 final size:20
Alignment explanation
Indices: 50263--50305 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
50253 TAATTTATAA
50263 CTCCCCCTTAATAAAATTTTT
1 CTCCCCCTTAAT-AAATTTTT
*
50284 CTCCCTCTTAATAAATTTTT
1 CTCCCCCTTAATAAATTTTT
50304 CT
1 CT
50306 TTCCCTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.26, C:0.28, G:0.00, T:0.47
Consensus pattern (20 bp):
CTCCCCCTTAATAAATTTTT
Found at i:50301 original size:20 final size:21
Alignment explanation
Indices: 50263--50320 Score: 73
Period size: 20 Copynumber: 2.8 Consensus size: 21
50253 TAATTTATAA
50263 CTCCCCCTTAATAAAATTTTT
1 CTCCCCCTTAATAAAATTTTT
*
50284 CTCCCTCTTAAT-AAATTTTT
1 CTCCCCCTTAATAAAATTTTT
** *
50304 CTTTCCCTTAAAAAAAT
1 CTCCCCCTTAATAAAAT
50321 AATTTTTCTC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 16 0.52
21 15 0.48
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.43
Consensus pattern (21 bp):
CTCCCCCTTAATAAAATTTTT
Found at i:50320 original size:21 final size:19
Alignment explanation
Indices: 50267--50334 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 19
50257 TTATAACTCC
*
50267 CCCTTAATAAAATTTTTCT
1 CCCTTAAAAAAATTTTTCT
* *
50286 CCCTCTTAATAAATTTTTCTTT
1 CCCT-TAAAAAAATTTTTC--T
50308 CCCTTAAAAAAATAATTTTTCT
1 CCCTT--AAAAA-AATTTTTCT
50330 CCCTT
1 CCCTT
50335 TTTCAAATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
19 4 0.11
20 11 0.29
21 1 0.03
22 11 0.29
23 3 0.08
24 8 0.21
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (19 bp):
CCCTTAAAAAAATTTTTCT
Found at i:52195 original size:13 final size:13
Alignment explanation
Indices: 52174--52208 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
52164 AATGCCTTTA
*
52174 TATCGATACAGTG
1 TATCGATACAATG
*
52187 TATCAATACAATG
1 TATCGATACAATG
52200 TATCGATAC
1 TATCGATAC
52209 TACAAACACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:58556 original size:20 final size:20
Alignment explanation
Indices: 58533--58570 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
58523 CAAAGCAATA
58533 TGTATTGATACTTTTAGGTC
1 TGTATTGATACTTTTAGGTC
58553 TGTATTGATACTTTTAGG
1 TGTATTGATACTTTTAGG
58571 ATTTTAACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.08, G:0.21, T:0.50
Consensus pattern (20 bp):
TGTATTGATACTTTTAGGTC
Found at i:59015 original size:9 final size:9
Alignment explanation
Indices: 58994--59033 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
58984 TAAACAAAAC
58994 AAAAAAGAGG
1 AAAAAAGA-G
59004 AAAAAAGAG
1 AAAAAAGAG
*
59013 AAAAAAAAG
1 AAAAAAGAG
*
59022 AGAAAAGAG
1 AAAAAAGAG
59031 AAA
1 AAA
59034 TTCTAAGGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
9 18 0.69
10 8 0.31
ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00
Consensus pattern (9 bp):
AAAAAAGAG
Found at i:60434 original size:136 final size:135
Alignment explanation
Indices: 60182--60438 Score: 378
Period size: 136 Copynumber: 1.9 Consensus size: 135
60172 AAGGTTATAT
60182 GGGAACTTTCATGTTCAAACATGTCCATTAGGGGTATTTAGGTAATAGTAGCTTAAAACCAAGTC
1 GGGAACTTTCATGTTCAAACATGTCCATTAGGGGTATTTAGGTAATAGTAGCTTAAAACCAAGTC
* *
60247 TAGGGTCATGTTGGAATCTTCATGTCAAAACATGTCTATTAAGGGTATTTAAGTAATAGCAAGGG
66 TAGGGTCATATAGGAATCTTCATGTCAAAACATGTCTATTAAGGGTATTTAA-TAATAGCAAGGG
60312 TCATGA
130 TCATGA
* * * * *
60318 GGGAATTTTCATG-TCAAAGCATGTCTATTAGGGTTATTTAGGTCATAGTAGCTTAAAACCGAGT
1 GGGAACTTTCATGTTCAAA-CATGTCCATTAGGGGTATTTAGGTAATAGTAGCTTAAAACCAAGT
60382 CTAGGGTCATATAGGAA-CTTTCATGTCAAAACATGT-TCATT-AGGGTATTTTAATAAT
65 CTAGGGTCATATAGGAATC-TTCATGTCAAAACATGTCT-ATTAAGGGTA-TTTAATAAT
60439 GGTACCTTGA
Statistics
Matches: 110, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
135 17 0.15
136 93 0.85
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (135 bp):
GGGAACTTTCATGTTCAAACATGTCCATTAGGGGTATTTAGGTAATAGTAGCTTAAAACCAAGTC
TAGGGTCATATAGGAATCTTCATGTCAAAACATGTCTATTAAGGGTATTTAATAATAGCAAGGGT
CATGA
Found at i:61092 original size:13 final size:15
Alignment explanation
Indices: 61071--61102 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
61061 TCAACTATTT
61071 TTTTCTCTTTTTT-C
1 TTTTCTCTTTTTTGC
61085 TTTT-TCTTTTTTGC
1 TTTTCTCTTTTTTGC
61099 TTTT
1 TTTT
61103 ACTATCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (15 bp):
TTTTCTCTTTTTTGC
Found at i:64424 original size:18 final size:18
Alignment explanation
Indices: 64382--64417 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
64372 TTAAACATGA
*
64382 CCTGTATGAGAACTCTAT
1 CCTGTATGAAAACTCTAT
64400 CCTGTATGAAAACTCTAT
1 CCTGTATGAAAACTCTAT
64418 TTGGTATTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (18 bp):
CCTGTATGAAAACTCTAT
Found at i:65675 original size:52 final size:51
Alignment explanation
Indices: 65566--65683 Score: 150
Period size: 52 Copynumber: 2.3 Consensus size: 51
65556 GAAAATAACA
* *
65566 AGGTTGGAGTATCCCTGATTATAGAAAATCGGTATTTTGAAAATAAAATCG
1 AGGTTGGAGTATCCCCGATTATAGAAAATCGGTATTTTGAAAATAAAATAG
* *
65617 AAGTTGGAGTATCCCCGATT-TATGAAAATTTGGTATTTT-AGAAATAAAATAG
1 AGGTTGGAGTATCCCCGATTATA-GAAAA-TCGGTATTTTGA-AAATAAAATAG
*
65669 GGGTTGGAGTATCCC
1 AGGTTGGAGTATCCC
65684 ATCGGAAATA
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
50 2 0.03
51 24 0.41
52 32 0.55
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.32
Consensus pattern (51 bp):
AGGTTGGAGTATCCCCGATTATAGAAAATCGGTATTTTGAAAATAAAATAG
Found at i:65734 original size:28 final size:28
Alignment explanation
Indices: 65668--65739 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 28
65658 AAATAAAATA
65668 GGGGTTGGAGTAT-CCCATCGGAAATAAC
1 GGGGTTGGAGTATCCCCATC-GAAATAAC
* * *
65696 AGGATTAGAGTATCCCCGAT-GAAATAAC
1 GGGGTTGGAGTATCCCC-ATCGAAATAAC
65724 GGGGTTGGAGTA-CCCC
1 GGGGTTGGAGTATCCCC
65740 TGATTATGAA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
27 4 0.11
28 27 0.75
29 3 0.08
30 2 0.06
ACGTcount: A:0.29, C:0.19, G:0.31, T:0.21
Consensus pattern (28 bp):
GGGGTTGGAGTATCCCCATCGAAATAAC
Found at i:65816 original size:28 final size:27
Alignment explanation
Indices: 65776--65847 Score: 110
Period size: 28 Copynumber: 2.6 Consensus size: 27
65766 TATAAAGCCG
65776 GGGTTGGAGTATCCTCTCGA-AAATAACA
1 GGGTTGGAGTATCC-C-CGAGAAATAACA
65804 GGGTTGGAGTATCCCCGATGAAATAACA
1 GGGTTGGAGTATCCCCGA-GAAATAACA
65832 GGGTTGGAGTATCCCC
1 GGGTTGGAGTATCCCC
65848 AATTGTGAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
26 3 0.07
27 1 0.02
28 38 0.90
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (27 bp):
GGGTTGGAGTATCCCCGAGAAATAACA
Found at i:65912 original size:109 final size:106
Alignment explanation
Indices: 65670--65968 Score: 440
Period size: 109 Copynumber: 2.8 Consensus size: 106
65660 ATAAAATAGG
* * *
65670 GGTTGGAGTATCCCATCGGAAATAACAGGATTAGAGTATCCCCGATGAAATAACGGGGTTGGAGT
1 GGTTGGAGTATCCCTTC-GAAATAACAGGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGT
* *
65735 ACCCCTGATTATG-AAAAACAATATTTTTAGATATAAAGCCGG
65 ACCCC-GATTGTGAAAAAACAATATTTTTAGATATAAAGCCGA
*
65777 GGTTGGAGTAT-CCTCTCGAAAATAACAGGGTTGGAGTATCCCCGATGAAATAACAGGGTTGGAG
1 GGTTGGAGTATCCCT-TCG-AAATAACAGGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAG
* *
65841 TATCCCCAATTGTGAAAAACACAATATTTTTAGATATAAAGCTGA
64 TA-CCCCGATTGTGAAAAA-ACAATATTTTTAGATATAAAGCCGA
65886 GGTTGGAGTATCCCTTCAGAAATAACAGGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGT
1 GGTTGGAGTATCCCTTC-GAAATAACAGGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGT
65951 ACCCCCGATTGTGAAAAA
65 A-CCCCGATTGTGAAAAA
65969 TTGGTGTTTT
Statistics
Matches: 174, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
106 3 0.02
107 62 0.36
108 8 0.05
109 97 0.56
110 4 0.02
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (106 bp):
GGTTGGAGTATCCCTTCGAAATAACAGGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGTA
CCCCGATTGTGAAAAAACAATATTTTTAGATATAAAGCCGA
Found at i:65926 original size:28 final size:28
Alignment explanation
Indices: 65886--65959 Score: 98
Period size: 28 Copynumber: 2.6 Consensus size: 28
65876 ATAAAGCTGA
65886 GGTTGGAGTATCCCTTC-A-GAAATAACAG
1 GGTTGGAGTATCCC--CGATGAAATAACAG
*
65914 GGTTGGAGTATCCCCGATGAAATAACGG
1 GGTTGGAGTATCCCCGATGAAATAACAG
*
65942 GGTTGGAGTACCCCCGAT
1 GGTTGGAGTATCCCCGAT
65960 TGTGAAAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
26 1 0.02
27 1 0.02
28 40 0.95
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (28 bp):
GGTTGGAGTATCCCCGATGAAATAACAG
Found at i:66086 original size:51 final size:51
Alignment explanation
Indices: 65943--66086 Score: 146
Period size: 51 Copynumber: 2.8 Consensus size: 51
65933 AAATAACGGG
* ** * * *
65943 GTTGGAGTACCCCCGATTGTGAAAAATTGGTGTTTTGGCAATAAAATCGAA
1 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAAAATAGAA
* * ** * * *
65994 GTTGGAATATCCCCGATTACGGTAAATCGATGCTTTAGAAATAAAATTAG-A
1 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAAAA-TAGAA
*
66045 GTTGGAGTATCCCCGATTAAGAAAAATTGACGTTTTGGAAAT
1 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAAT
66087 GGAACTGGGA
Statistics
Matches: 72, Mismatches: 20, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
51 70 0.97
52 2 0.03
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAAAATAGAA
Found at i:68462 original size:21 final size:21
Alignment explanation
Indices: 68416--68477 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
68406 ACTGCCTGAA
*
68416 TGTATCGATACATTGTAA-AA-
1 TGTATCGATACAATG-AACAAT
*
68436 TGTATCGATACAATGAGCAAT
1 TGTATCGATACAATGAACAAT
68457 TGTATCGATACAATGAACAAT
1 TGTATCGATACAATGAACAAT
68478 GCATCAATAC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.03
20 16 0.43
21 20 0.54
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (21 bp):
TGTATCGATACAATGAACAAT
Found at i:68489 original size:20 final size:21
Alignment explanation
Indices: 68443--68489 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
68433 AAATGTATCG
* * *
68443 ATACAATGAGCAATTGTATCG
1 ATACAATGAACAATTGCATCA
68464 ATACAATGAACAA-TGCATCA
1 ATACAATGAACAATTGCATCA
68484 ATACAA
1 ATACAA
68490 ATTGTGAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.47, C:0.17, G:0.13, T:0.23
Consensus pattern (21 bp):
ATACAATGAACAATTGCATCA
Found at i:69007 original size:28 final size:28
Alignment explanation
Indices: 68976--69031 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
68966 AGCCAATGTA
*
68976 AGACAACATAGATGATGTTCTAAAAGGC
1 AGACAACATAGATGATGTTCGAAAAGGC
69004 AGACAACATAGATGATGTTCGAAAAGGC
1 AGACAACATAGATGATGTTCGAAAAGGC
69032 TTTTAAGTGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.43, C:0.14, G:0.23, T:0.20
Consensus pattern (28 bp):
AGACAACATAGATGATGTTCGAAAAGGC
Found at i:71453 original size:20 final size:20
Alignment explanation
Indices: 71430--71533 Score: 75
Period size: 20 Copynumber: 5.7 Consensus size: 20
71420 CACATCTAGA
*
71430 TGTATCGATACATTGTGCTT
1 TGTATCGATACATTGTGCAT
*
71450 TGTATCGATACA-TGTTCAT
1 TGTATCGATACATTGTGCAT
*
71469 TGTAT---TA-A---TACAT
1 TGTATCGATACATTGTGCAT
*
71482 TGTATCGATACA-TGTTCAT
1 TGTATCGATACATTGTGCAT
**
71501 TGTATCGATACATACT-CAAT
1 TGTATCGATACATTGTGC-AT
71521 TGTATCGATACAT
1 TGTATCGATACAT
71534 GAAACTGGCA
Statistics
Matches: 70, Mismatches: 6, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
13 9 0.13
15 1 0.01
16 4 0.06
17 1 0.01
19 27 0.39
20 28 0.40
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATTGTGCAT
Found at i:71512 original size:32 final size:32
Alignment explanation
Indices: 71449--71513 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
71439 ACATTGTGCT
*
71449 TTGTATCGATACATGTTCATTGTATTAATACA
1 TTGTATCGATACATGTTCATTGTATCAATACA
*
71481 TTGTATCGATACATGTTCATTGTATCGATACA
1 TTGTATCGATACATGTTCATTGTATCAATACA
71513 T
1 T
71514 ACTCAATTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (32 bp):
TTGTATCGATACATGTTCATTGTATCAATACA
Found at i:72657 original size:51 final size:51
Alignment explanation
Indices: 72579--72698 Score: 132
Period size: 51 Copynumber: 2.4 Consensus size: 51
72569 TCAAAAATAA
* * * *
72579 CAGGGTTAGAGTATCCCCAATGGTGAAAAATAGATATTTTGGAAATAAAAT
1 CAGGGTTGGAGTATCCCCAATGATGAAAAATAGATATTTTAGAAATAAAAC
* * * * * **
72630 CAGGGTTGGAGTATCCTCGATTATGAAAAATTGATGTTTTAGAAATAAGGC
1 CAGGGTTGGAGTATCCCCAATGATGAAAAATAGATATTTTAGAAATAAAAC
*
72681 CAGGGTTGGAGTGTCCCC
1 CAGGGTTGGAGTATCCCC
72699 TTAGAAATAA
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.28
Consensus pattern (51 bp):
CAGGGTTGGAGTATCCCCAATGATGAAAAATAGATATTTTAGAAATAAAAC
Found at i:72715 original size:79 final size:79
Alignment explanation
Indices: 72632--73072 Score: 467
Period size: 79 Copynumber: 5.6 Consensus size: 79
72622 AATAAAATCA
* * * *
72632 GGGTTGGAGTATCCTCGATTATGAAAAATTGATGTTTTAGAAATAAGGCCAGGGTTGGAGTGTCC
1 GGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAGCCAGGGTTGGAGTATCC
*
72697 CCTTAGAAATAACG
66 CCTCAGAAATAACG
* * * * * * *
72711 GGGTTAGGGTATCCTCGATTGTGAAAATTTGATGTTTTAGAAATAAGGTC-GAGATTGGAGTATC
1 GGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAGCCAG-GGTTGGAGTATC
* *
72775 CCCTCAAAAATAATG
65 CCCTCAGAAATAACG
* * * * * ** *
72790 GGGTAAGAGTATCCCCGATTGTGAAAAGTTAATGTTTTGGAAATAAAATC-GAGGTTGAAGTATC
1 GGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAGCCAG-GGTTGGAGTATC
**
72854 CCCTTGGAAATAACG
65 CCCTCAGAAATAACG
* * *
72869 GGGTT-GAAATATCCCCGATTATGGAAAATTGATGTTTTAAAAATAAAGCCAGGGTTGGAGTATC
1 GGGTTAG-AGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAGCCAGGGTTGGAGTATC
*
72933 CCCTCAGAAATAA-T
65 CCCTCAGAAATAACG
* * * * *
72947 GGGTTAGAGTATCCTCAATTATGGAAAATCGATGTTTTAGAAATAAAGCCAAGGTTGGAGTATCC
1 GGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAGCCAGGGTTGGAGTATCC
* *
73012 CCTCGGAAATAACA
66 CCTCAGAAATAACG
* ** * *
73026 GGGTTAAAGTATCCCCGATGGTGAAAAATCGATGTTTTGGAAATAAA
1 GGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAA
73073 AAACATCAAT
Statistics
Matches: 304, Mismatches: 53, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
78 70 0.23
79 233 0.77
80 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.29
Consensus pattern (79 bp):
GGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAGCCAGGGTTGGAGTATCC
CCTCAGAAATAACG
Found at i:73041 original size:236 final size:237
Alignment explanation
Indices: 72632--73073 Score: 620
Period size: 236 Copynumber: 1.9 Consensus size: 237
72622 AATAAAATCA
* * * * * *
72632 GGGTTGGAGTATCCTCGATTATGAAAAATTGATGTTTTAGAAATAAGGCCAGGGTTGGAGTGTCC
1 GGGTTGAAATATCCCCGATTATGAAAAATTGATGTTTTAAAAATAAAGCCAGGGTTGGAGTATCC
* * * * * * * *
72697 CCTTAGAAATAACGGGGTTAGGGTATCCTCGATTGTGAAAATTTGATGTTTTAGAAATAAGGTCG
66 CCTCAGAAATAACGGGGTTAGAGTATCCTCAATTATGAAAATTCGATGTTTTAGAAATAAAGCCA
* * * *
72762 AGATTGGAGTATCCCCTCAAAAATAATGGGGTAAGAGTATCCCCGATTGTGAAAAGTTAATGTTT
131 AGATTGGAGTATCCCCTCAAAAATAAAGGGGTAAGAGTATCCCCGATGGTGAAAAATCAATGTTT
72827 TGGAAATAAAATCGAGGTTGAAGTATCCCCTTGGAAATAACG
196 TGGAAATAAAATCGAGGTTGAAGTATCCCCTTGGAAATAACG
*
72869 GGGTTGAAATATCCCCGATTATGGAAAATTGATGTTTTAAAAATAAAGCCAGGGTTGGAGTATCC
1 GGGTTGAAATATCCCCGATTATGAAAAATTGATGTTTTAAAAATAAAGCCAGGGTTGGAGTATCC
*
72934 CCTCAGAAATAA-TGGGTTAGAGTATCCTCAATTATGGAAAA-TCGATGTTTTAGAAATAAAGCC
66 CCTCAGAAATAACGGGGTTAGAGTATCCTCAATTAT-GAAAATTCGATGTTTTAGAAATAAAGCC
* ** * *
72997 AAGGTTGGAGTATCCCCTCGGAAATAACAGGGTTAA-AGTATCCCCGATGGTGAAAAATCGATGT
130 AAGATTGGAGTATCCCCTCAAAAATAA-AGGGGTAAGAGTATCCCCGATGGTGAAAAATCAATGT
73061 TTTGGAAATAAAA
194 TTTGGAAATAAAA
73074 AACATCAATG
Statistics
Matches: 178, Mismatches: 25, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
236 98 0.55
237 80 0.45
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.29
Consensus pattern (237 bp):
GGGTTGAAATATCCCCGATTATGAAAAATTGATGTTTTAAAAATAAAGCCAGGGTTGGAGTATCC
CCTCAGAAATAACGGGGTTAGAGTATCCTCAATTATGAAAATTCGATGTTTTAGAAATAAAGCCA
AGATTGGAGTATCCCCTCAAAAATAAAGGGGTAAGAGTATCCCCGATGGTGAAAAATCAATGTTT
TGGAAATAAAATCGAGGTTGAAGTATCCCCTTGGAAATAACG
Found at i:75419 original size:20 final size:20
Alignment explanation
Indices: 75394--75431 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
75384 GGGTAAAACC
75394 AAGAATGTATCGAAACAATG
1 AAGAATGTATCGAAACAATG
*
75414 AAGAATGTATCGATACAA
1 AAGAATGTATCGAAACAA
75432 ATTGTGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.11, G:0.18, T:0.21
Consensus pattern (20 bp):
AAGAATGTATCGAAACAATG
Found at i:76194 original size:41 final size:42
Alignment explanation
Indices: 76113--76194 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 42
76103 AAAAGAGTAT
*
76113 ATCCTGCTCTTTGAGGACAAAAGAGAAAAGGAAATAAAGTGC
1 ATCCTACTCTTTGAGGACAAAAGAGAAAAGGAAATAAAGTGC
*
76155 ATCCTACTCTTTGAGGAC-AAAGGGAAAAGGAAATAAAGTG
1 ATCCTACTCTTTGAGGACAAAAGAGAAAAGGAAATAAAGTG
76195 GGCTTTGCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 21 0.55
42 17 0.45
ACGTcount: A:0.43, C:0.13, G:0.24, T:0.20
Consensus pattern (42 bp):
ATCCTACTCTTTGAGGACAAAAGAGAAAAGGAAATAAAGTGC
Found at i:76369 original size:120 final size:120
Alignment explanation
Indices: 76192--76749 Score: 602
Period size: 120 Copynumber: 4.6 Consensus size: 120
76182 AGGAAATAAA
*
76192 GTGGGCTTTGCAAGAAG-AAAGCATCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTG
1 GTGGGCTTTG-AA-AAGAAAAGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTG
* * * *
76256 GGCTTTGAAAGGAAAA-CATCCTGCTCTTTGAGGACTGAGAGGGGCCACCAACTTGT
64 GGCTTTGAAAGGAAAAGCGTCCAGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
* * *
76312 ATGGGCTTTGCAATAAG-AAAGTGTCCTACTCTTTGAGGACTAGAAGGTGCCATCAACTTGTGTG
1 GTGGGCTTTG-AA-AAGAAAAGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTG
* * *
76376 GGCTTTGAAAGGAAAA-TGTCCAGCTCTTTGAGAACTGAAAGGTGCCACCAACTTAT
64 GGCTTTGAAAGGAAAAGCGTCCAGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
* ** * * * *
76432 GTGGGCTTT-AAAAGGAAAAGGCATCCCGCTCTTTGAGGATTGGAAAGTGCCACCAACTTGTATG
1 GTGGGCTTTGAAAA-GAAAA-GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTG
* * * *
76496 GGCTTTAAAAAGAAAATGTGT-CATGCTCTTTGAGGACTGGAAA-GTGCCACCAATTTGT
64 GGCTTTGAAAGGAAAA-GCGTCCA-GCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGT
* *
76554 GTGGGCTTT-ATAAAGAAAAGGCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAAC-T-TGTG
1 GTGGGCTTTGA-AAAGAAAA-GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTG
* *
76616 AGCTTTAAAAGGAAAAGGCGTCCAGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
64 GGCTTTGAAAGGAAAA-GCGTCCAGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
* * * * * *
76674 GTGGAC-TTGAAAAGGAAAAGGCGTCCTGCTTTTTGAGGA-TTGAAAGATGCCACCAACTTATGT
1 GTGGGCTTTGAAAA-GAAAA-GCGTCCTACTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGT
76737 GGG-TTTGAAAGGA
63 GGGCTTTGAAAGGA
76750 GAAGGCGTAT
Statistics
Matches: 378, Mismatches: 45, Indels: 29
0.84 0.10 0.06
Matches are distributed among these distances:
117 2 0.01
118 3 0.01
119 14 0.04
120 254 0.67
121 15 0.04
122 83 0.22
123 7 0.02
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (120 bp):
GTGGGCTTTGAAAAGAAAAGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGG
CTTTGAAAGGAAAAGCGTCCAGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
Found at i:76370 original size:61 final size:59
Alignment explanation
Indices: 76192--76746 Score: 500
Period size: 61 Copynumber: 9.2 Consensus size: 59
76182 AGGAAATAAA
* *
76192 GTGGGCTTTGCAAGAAGAAAGCATCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGT
1 GTGGGCTTTG-AA-AAGAAAGCGTCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGT
* * * * *
76253 GTGGGCTTTGAAAGGAAAACATCCTGCTCTTTGAGGACT-GAGAGGGGCCACCAACTTGT
1 GTGGGCTTTGAAAAGAAAGCGTCCTACTCTTTGAGGACTGGA-AGGTGCCACCAACTTGT
* * * *
76312 ATGGGCTTTGCAATAAGAAAGTGTCCTACTCTTTGAGGACTAGAAGGTGCCATCAACTTGT
1 GTGGGCTTTG-AA-AAGAAAGCGTCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGT
* ** * * *
76373 GTGGGCTTTGAAAGGAAAATGTCC-AGCTCTTTGAGAACTGAAAGGTGCCACCAACTTAT
1 GTGGGCTTTGAAAAGAAAGCGTCCTA-CTCTTTGAGGACTGGAAGGTGCCACCAACTTGT
* ** * *
76432 GTGGGCTTT-AAAAGGAAAAGGCATCCCGCTCTTTGAGGATTGGAAAGTGCCACCAACTTGT
1 GTGGGCTTTGAAAA-G-AAA-GCGTCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGT
* * * * * * *
76493 ATGGGCTTTAAAAAGAAAATGTGTCATGCTCTTTGAGGACTGGAAAGTGCCACCAATTTGT
1 GTGGGCTTTGAAAAG-AAA-GCGTCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGT
*
76554 GTGGGCTTT-ATAAAGAAAAGGCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAAC-T-T
1 GTGGGCTTTGA-AAAG-AAA-GCGTCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGT
* *
76613 GTGAGCTTT-AAAAGGAAAAGGCGTCC-AGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
1 GTGGGCTTTGAAAA-G-AAA-GCGTCCTA-CTCTTTGAGGACTGGAAGGTGCCACCAACTTGT
* * * * * * *
76674 GTGGAC-TTGAAAAGGAAAAGGCGTCCTGCTTTTTGAGGATTGAAAGATGCCACCAACTTAT
1 GTGGGCTTTGAAAA-G-AAA-GCGTCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGT
76735 GTGGG-TTTGAAA
1 GTGGGCTTTGAAA
76747 GGAGAAGGCG
Statistics
Matches: 421, Mismatches: 55, Indels: 36
0.82 0.11 0.07
Matches are distributed among these distances:
58 10 0.02
59 146 0.35
60 14 0.03
61 245 0.58
62 6 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (59 bp):
GTGGGCTTTGAAAAGAAAGCGTCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGT
Found at i:76527 original size:181 final size:179
Alignment explanation
Indices: 76192--76749 Score: 625
Period size: 181 Copynumber: 3.1 Consensus size: 179
76182 AGGAAATAAA
* * *
76192 GTGGGCTTTGCAAGAAGAAAGCATCCTACTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTG
1 GTGGGCTTTGAAAGGA-AAAGCGTCCTACTCTTTGAGGACTGA-AAGGTGCCACCAACTT-TGTG
* * * *
76256 GGCTTTGAAAGGAAAA--CATCCTGCTCTTTGAGGACTGAGAGGGGCCACCAACTTGTATGGGCT
63 GGCTTTAAAAGGAAAAGGCATCCAGCTCTTTGAGGACTGA-AAGTGCCACCAACTTGTATGGGCT
* * *
76319 TTGCAATAAG-AAAGTGTCCTACTCTTTGAGGACTAGAAGGTGCCATCAACTTGT
127 TT--AAAAAGAAAAGTGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGT
* *
76373 GTGGGCTTTGAAAGGAAAA-TGTCC-AGCTCTTTGAGAACTGAAAGGTGCCACCAACTTATGTGG
1 GTGGGCTTTGAAAGGAAAAGCGTCCTA-CTCTTTGAGGACTGAAAGGTGCCACCAACTT-TGTGG
* *
76436 GCTTTAAAAGGAAAAGGCATCCCGCTCTTTGAGGATTGGAAAGTGCCACCAACTTGTATGGGCTT
64 GCTTTAAAAGGAAAAGGCATCCAGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTATGGGCTT
* * * *
76501 TAAAAAGAAAATGTGTCATGCTCTTTGAGGACTGGAAAGTGCCACCAATTTGT
128 TAAAAAGAAAA-GTGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGT
*
76554 GTGGGCTTT-ATAAAGAAAAGGCGTCCTACTCTTTGAGGACTGGAAA-GTGCCACCAAC-TTGTG
1 GTGGGCTTTGA-AAGGAAAA-GCGTCCTACTCTTTGAGGACT-GAAAGGTGCCACCAACTTTGTG
* * * *
76616 AGCTTTAAAAGGAAAAGGCGTCCAGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGACT
63 GGCTTTAAAAGGAAAAGGCATCCAGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTATGGGCT
* * * * * * *
76681 TGAAAAGGAAAAGGCGTCCTGCTTTTTGAGGA-TTGAAAGATGCCACCAACTTAT
127 TTAAAAAGAAAA-GTGTCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGT
76735 GTGGG-TTTGAAAGGA
1 GTGGGCTTTGAAAGGA
76750 GAAGGCGTAT
Statistics
Matches: 323, Mismatches: 39, Indels: 31
0.82 0.10 0.08
Matches are distributed among these distances:
178 1 0.00
179 55 0.17
180 21 0.07
181 211 0.65
182 3 0.01
183 27 0.08
184 5 0.02
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (179 bp):
GTGGGCTTTGAAAGGAAAAGCGTCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTTGTGGGC
TTTAAAAGGAAAAGGCATCCAGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTATGGGCTTTAA
AAAGAAAAGTGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGT
Found at i:90249 original size:79 final size:78
Alignment explanation
Indices: 90105--90424 Score: 290
Period size: 79 Copynumber: 4.1 Consensus size: 78
90095 TATTATTGAG
* * * * * * *
90105 ATAAAACCGAGGTTAGAGTATCCCCTCGAAAATAACGAGGTTGGAGTCTCCCCAATGGTGAAAAA
1 ATAAAATCGGGGTTAGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCGAAT-ATGGAAAA
*
90170 TTAATGTTTTGGAA
65 TTAATGTTTTAGAA
* * *
90184 ATAAAATCGGGGTTAGAGTATCCACTCAAAAATAACGAGATTTGAGTATCCTCGAATATGGAAAA
1 ATAAAATCGGGGTTAGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCC-CGAATATGGAAAA
**
90249 TCGATGTTTTAGAA
65 TTAATGTTTTAGAA
** * * *
90263 AT-AAGGCTGGGGTTGGAGTATCCGCTCAAAAATAACGAGGTTGGAGTATCCCCGATTAT-GAAA
1 ATAAAATC-GGGGTTAGAGTATCCCCTCAAAAATAACGAGGTTGGAGTAT-CCCGAATATGGAAA
* *
90326 AATAGATGTTTTAAAA
64 ATTA-ATGTTTTAGAA
** * * * *
90342 ATAAGGTTGCGGTTAGAGTATCCCCTCAGAAATAA-TAGGGTTGGAGTATCCCTG-AT-TGTGAA
1 ATAAAATCGGGGTTAGAGTATCCCCTCAAAAATAACGA-GGTTGGAGTATCCC-GAATATG-GAA
*
90404 AATTAATATTTTAGAA
63 AATTAATGTTTTAGAA
90420 ATAAA
1 ATAAA
90425 GCTGGTGTTG
Statistics
Matches: 195, Mismatches: 37, Indels: 19
0.78 0.15 0.08
Matches are distributed among these distances:
77 1 0.01
78 26 0.13
79 160 0.82
80 8 0.04
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.28
Consensus pattern (78 bp):
ATAAAATCGGGGTTAGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCGAATATGGAAAAT
TAATGTTTTAGAA
Found at i:90325 original size:158 final size:157
Alignment explanation
Indices: 90115--90461 Score: 378
Period size: 158 Copynumber: 2.2 Consensus size: 157
90105 ATAAAACCGA
* * * *
90115 GGTTAGAGTATCCCCTCGAAAATAACGAGGTTGGAGTCTCCCCAATGGTGAAAAATTA-ATGTTT
1 GGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCAATGATGAAAAA-TAGATGTTT
** * *
90179 TGGAAATAAAATCGGGGTTAGAGTATCCACTCAAAAATAACGA-GATTTGAGTAT-CCTCGAATA
65 TAAAAATAAAATCGCGGTTAGAGTATCCACTCAAAAATAA-GAGGATTGGAGTATCCCT-G-AT-
* * *
90242 TG-GAAAATCGATGTTTTAGAAATAAGGCTGG
126 TGTGAAAATCAATATTTTAGAAATAAAGCTGG
* * *
90273 GGTTGGAGTATCCGCTCAAAAATAACGAGGTTGGAGTATCCCCGATTATGAAAAATAGATGTTTT
1 GGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCAATGATGAAAAATAGATGTTTT
** * * * * *
90338 AAAAATAAGGTTGCGGTTAGAGTATCCCCTCAGAAATAATAGGGTTGGAGTATCCCTGATTGTGA
66 AAAAATAAAATCGCGGTTAGAGTATCCACTCAAAAATAAGAGGATTGGAGTATCCCTGATTGTGA
*
90403 AAATTAATATTTTAGAAATAAAGCTGG
131 AAATCAATATTTTAGAAATAAAGCTGG
* * * * *
90430 TGTTGGAGTATTCCTTCGAAAATAACGGGGTT
1 GGTTGGAGTATCCCCTCAAAAATAACGAGGTT
90462 AGATGGTGAA
Statistics
Matches: 157, Mismatches: 28, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
156 2 0.01
157 56 0.36
158 96 0.61
159 3 0.02
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (157 bp):
GGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCAATGATGAAAAATAGATGTTTT
AAAAATAAAATCGCGGTTAGAGTATCCACTCAAAAATAAGAGGATTGGAGTATCCCTGATTGTGA
AAATCAATATTTTAGAAATAAAGCTGG
Found at i:91111 original size:20 final size:20
Alignment explanation
Indices: 91080--91134 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
91070 TTACCCAGAT
* *
91080 GTATCGATACATTTTTCAAA
1 GTATCAATACATTCTTCAAA
* *
91100 GTTTCAATACATTCTTCAAT
1 GTATCAATACATTCTTCAAA
*
91120 GTATCGATACATTCT
1 GTATCAATACATTCT
91135 GTCTTTTTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.31, C:0.18, G:0.09, T:0.42
Consensus pattern (20 bp):
GTATCAATACATTCTTCAAA
Found at i:106439 original size:26 final size:27
Alignment explanation
Indices: 106366--106439 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 27
106356 CAATTCACCA
* * *
106366 TTTGTCAATAAATTATCGTCAAGAACT
1 TTTGTCAAGAAATTTTCGTCAAAAACT
*
106393 TTTGTCGAG-AATGTTT-GTCAAAAAC-
1 TTTGTCAAGAAAT-TTTCGTCAAAAACT
*
106418 TTTGTCAAGAAATTTTCATCAA
1 TTTGTCAAGAAATTTTCGTCAA
106440 TACAACCCTT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
25 11 0.29
26 18 0.47
27 9 0.24
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.38
Consensus pattern (27 bp):
TTTGTCAAGAAATTTTCGTCAAAAACT
Found at i:106487 original size:28 final size:28
Alignment explanation
Indices: 106449--107159 Score: 745
Period size: 28 Copynumber: 25.4 Consensus size: 28
106439 ATACAACCCT
*
106449 TTTCAAAGCCCACATGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* * * **
106477 TTTTAAAGCCCATAAGTCAATGAAATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
*
106505 TTTCAAAGCCCACAAGTCAGTGGCATCA
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* *
106533 TTTCAAAGCCTACATGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* *
106561 TTTCAAAGTCCACAAGTCAGTGGCTTCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
*
106589 TTTCAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
*
106617 TTTCAAAGCCCATAAGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* *
106645 TTTCAAAGCCCACATGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* * * *
106673 TTTCAAAGTCCACATGTTAGTGGCATTC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* * * *
106701 TTTCAAAGTCCACAAATCAATGACATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* *
106729 TTTCAAAGCTCACAAGTTAGTGGCAT-C
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
*
106756 TCTTGAAAGCCCACAAGTCAGTGGCATCC
1 T-TTCAAAGCCCACAAGTCAGTGGCATCC
* *
106785 TTTCAAAGCCCATAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* *
106813 TTTCTAAGCCCACAAGTCAGTGACA-CC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
*
106840 TTTTCAAAGCCCACAAGTCAGTGGCA-CAT
1 -TTTCAAAGCCCACAAGTCAGTGGCATC-C
** * *
106869 TTTCAAAGTGCACAAGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* *
106897 TTTCCAAGCTCACAAGTCAGTGGCA-CC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
106924 TTTTCAAAGCCCACAAGTCAGTGGCA-CC
1 -TTTCAAAGCCCACAAGTCAGTGGCATCC
* *
106952 TTTTCAAAGCCCACAAGTCAGTGGAATCT
1 -TTTCAAAGCCCACAAGTCAGTGGCATCC
* *
106981 TTTCAAAGCCCACAAGTTAGTGGTATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* *
107009 TTTCAAAGCCCACAAGTTAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
** * *
107037 TTTCGAAA-TTCACAAATCAGTGGCACCC
1 TTTC-AAAGCCCACAAGTCAGTGGCATCC
* * * *
107065 TTTCGAAA-CTCACAAATCAGTAGCACCC
1 TTTC-AAAGCCCACAAGTCAGTGGCATCC
* * * *
107093 TTTGAAA-CCCATAAATCAGTGGCTTCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* * ** *
107120 TTTTAAAGCCTACAAGTTGGTGGCAACC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* *
107148 CTTCTAAGCCCA
1 TTTCAAAGCCCA
107160 ATGTTCCTGG
Statistics
Matches: 579, Mismatches: 95, Indels: 18
0.84 0.14 0.03
Matches are distributed among these distances:
27 28 0.05
28 544 0.94
29 7 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (28 bp):
TTTCAAAGCCCACAAGTCAGTGGCATCC
Found at i:108068 original size:20 final size:20
Alignment explanation
Indices: 108043--108204 Score: 108
Period size: 20 Copynumber: 7.5 Consensus size: 20
108033 TTTTACCTAG
*
108043 ATGTATCGATACATTTTTTA
1 ATGTATCGATACATTTTTCA
* * *
108063 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* *
108083 ATGTATCAATACATTCTTCA
1 ATGTATCGATACATTTTTCA
*
108103 ATGTATCGATAGATTCTGTCCTTTTACCCA
1 ATGTATCGAT--A--C-AT--TTTT---CA
*
108133 GATGTATCAATACATTTTTCA
1 -ATGTATCGATACATTTTTCA
* * *
108154 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* *
108174 ATGTATCAATACATTCTTCA
1 ATGTATCGATACATTTTTCA
108194 ATGTATCGATA
1 ATGTATCGATA
108205 TATTCTATCT
Statistics
Matches: 108, Mismatches: 23, Indels: 22
0.71 0.15 0.14
Matches are distributed among these distances:
20 82 0.76
21 2 0.02
22 1 0.01
24 5 0.05
25 1 0.01
26 1 0.01
27 4 0.04
29 1 0.01
30 2 0.02
31 9 0.08
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:108106 original size:40 final size:40
Alignment explanation
Indices: 108043--108204 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
108033 TTTTACCTAG
* * *
108043 ATGTATCGATACATTTTTTAATGTATCGATACATGTATGA
1 ATGTATCAATACATTCTTCAATGTATCGATACATGTATGA
* **
108083 ATGTATCAATACATTCTTCAATGTATCGATAGATTCTGTCCTTTTACCCA
1 ATGTATCAATACATTCTTCAATGTATCGATACA---TG------TA-TGA
*
108133 GATGTATCAATACATTTTTCAATGTATCGATACATGTATGA
1 -ATGTATCAATACATTCTTCAATGTATCGATACATGTATGA
108174 ATGTATCAATACATTCTTCAATGTATCGATA
1 ATGTATCAATACATTCTTCAATGTATCGATA
108205 TATTCTATCT
Statistics
Matches: 100, Mismatches: 11, Indels: 22
0.75 0.08 0.17
Matches are distributed among these distances:
40 59 0.59
41 1 0.01
42 2 0.02
43 2 0.02
48 2 0.02
49 2 0.02
50 1 0.01
51 31 0.31
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.40
Consensus pattern (40 bp):
ATGTATCAATACATTCTTCAATGTATCGATACATGTATGA
Found at i:108188 original size:91 final size:91
Alignment explanation
Indices: 108033--108258 Score: 353
Period size: 91 Copynumber: 2.5 Consensus size: 91
108023 AAAGTCACAT
* *
108033 TTTTACCTAGATGTATCGATACATTTTTTAATGTATCGATACATGTATGAATGTATCAATACATT
1 TTTTACCCAGATGTATCGATACATTTTTAAATGTATCGATACATGTATGAATGTATCAATACATT
*
108098 CTTCAATGTATCGATAGATTCTGTCC
66 CTTCAATGTATCGATAGATTCTATCC
* *
108124 TTTTACCCAGATGTATCAATACATTTTTCAATGTATCGATACATGTATGAATGTATCAATACATT
1 TTTTACCCAGATGTATCGATACATTTTTAAATGTATCGATACATGTATGAATGTATCAATACATT
* *
108189 CTTCAATGTATCGATATATTCTATCT
66 CTTCAATGTATCGATAGATTCTATCC
* ***
108215 TTTTACCCATATGTATCGATACATTGAAAAATGTATCGATACAT
1 TTTTACCCAGATGTATCGATACATTTTTAAATGTATCGATACAT
108259 CTAGTTAAAA
Statistics
Matches: 123, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
91 123 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.41
Consensus pattern (91 bp):
TTTTACCCAGATGTATCGATACATTTTTAAATGTATCGATACATGTATGAATGTATCAATACATT
CTTCAATGTATCGATAGATTCTATCC
Found at i:115084 original size:61 final size:61
Alignment explanation
Indices: 115006--115132 Score: 157
Period size: 61 Copynumber: 2.1 Consensus size: 61
114996 AAAGATGAAG
* * * * * * *
115006 AAGATGAAAAGAGTGATAAAGATGCCAATATGCTGATTC-AGGACTAGTAATATTGGGCTTA
1 AAGATGAAAAAAATGATAAAGATGCCAACATGCTAATTCAAGG-CCAGCAATATAGGGCTTA
* *
115067 AAGATGAAAAAAATGATAAAGGTGCCAACATGCTAATTCAAGGCCAGCGATATAGGGCTTA
1 AAGATGAAAAAAATGATAAAGATGCCAACATGCTAATTCAAGGCCAGCAATATAGGGCTTA
115128 AAGAT
1 AAGAT
115133 AAGAAGAATG
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
61 53 0.95
62 3 0.05
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.23
Consensus pattern (61 bp):
AAGATGAAAAAAATGATAAAGATGCCAACATGCTAATTCAAGGCCAGCAATATAGGGCTTA
Found at i:115257 original size:49 final size:49
Alignment explanation
Indices: 115085--115314 Score: 207
Period size: 49 Copynumber: 4.6 Consensus size: 49
115075 AAAAATGATA
* *
115085 AAGGTGCCAACATGCTAATTCAAGGCCAGCGATATAG-GG-CTTAAAGATAAG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGC-A-ATAGTGGACTTAAAGAT--G
* * ** * * *
115136 AAGAATGCCAATATGCTTATTCAAGGCCAGTGA-CGTTGGACTTAGGAATATTA
1 AAG-GTGCCAATATGCTGATTCAAGGCCAGCAATAG-TGGACTTA--AAGA-TG
* * *
115189 AAGATGCCAATATGTTGATTCAAGGCCAGCAATATTAGGA-TTAAAGATG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCAATAGT-GGACTTAAAGATG
* *
115238 AAGGTGCCAATGTGCTGATTCAAGGCTAGCAATAGTGGACTTAAAGATG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCAATAGTGGACTTAAAGATG
*
115287 AAGGTGCCGATATGCTGATTCAAGGCCA
1 AAGGTGCCAATATGCTGATTCAAGGCCA
115315 ACGAAATTGG
Statistics
Matches: 145, Mismatches: 24, Indels: 22
0.76 0.13 0.12
Matches are distributed among these distances:
48 3 0.02
49 67 0.46
50 4 0.03
51 5 0.03
52 56 0.39
53 6 0.04
54 3 0.02
55 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (49 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCAATAGTGGACTTAAAGATG
Found at i:115326 original size:49 final size:49
Alignment explanation
Indices: 115085--115509 Score: 237
Period size: 52 Copynumber: 8.6 Consensus size: 49
115075 AAAAATGATA
* * * * *
115085 AAGGTGCCAACATGCTAATTCAAGGCCAGCGATATAGGGCTTAAAGATAAG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGAAATTGGACTTAAAGAT--G
* * * ** * *
115136 AAGAATGCCAATATGCTTATTCAAGGCCAGTGACGTTGGACTTAGGAATATTA
1 AAG-GTGCCAATATGCTGATTCAAGGCCAGCGAAATTGGACTTA--AAGA-TG
* *
115189 AAGATGCCAATATGTTGATTCAAGGCCAGC-AATATTAGGA-TTAAAGATG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGAA-ATT-GGACTTAAAGATG
* * *
115238 AAGGTGCCAATGTGCTGATTCAAGGCTAGC-AATAGTGGACTTAAAGATG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGAA-ATTGGACTTAAAGATG
* *
115287 AAGGTGCCGATATGCTGATTCAAGGCCAACGAAATTGGAC-T-----T-
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGAAATTGGACTTAAAGATG
* * ** * ** *
115329 ---GTGCCAATGTGTTGATTCAAGGCCAATGATATTAAACTTAAAAATG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGAAATTGGACTTAAAGATG
* * ** * *
115375 AAAGGAATGCCAATATGCTGATTCAATGCCAGTGACGTTGGGCTTAGGAATATTG
1 -AAGG--TGCCAATATGCTGATTCAAGGCCAGCGAAATTGGACTTA--AAGA-TG
* * * * *
115430 AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGGCTTAAAAATG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGAAATTGGACTTAAAGATG
* *
115479 ACAAGGGTGCCAATGTGTTGATTCAAGGCCA
1 --AA-GGTGCCAATATGCTGATTCAAGGCCA
115510 ATGACATTGG
Statistics
Matches: 293, Mismatches: 54, Indels: 53
0.73 0.14 0.13
Matches are distributed among these distances:
39 30 0.10
40 1 0.00
43 1 0.00
45 1 0.00
48 4 0.01
49 75 0.26
50 9 0.03
51 6 0.02
52 148 0.51
53 6 0.02
54 9 0.03
55 3 0.01
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (49 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCGAAATTGGACTTAAAGATG
Found at i:115520 original size:104 final size:104
Alignment explanation
Indices: 115330--115525 Score: 268
Period size: 104 Copynumber: 1.9 Consensus size: 104
115320 ATTGGACTTG
* * *
115330 TGCCAATGTGTTGATTCAAGGCCAATGATATTAAACTTAAAAATGAAAGGAATGCCAATATGCTG
1 TGCCAATATGCTGATTCAAGGCCAACGATATTAAACTTAAAAATGAAAGGAATGCCAATATGCTG
* * *
115395 ATTCAATGCCAGTGACGTTGGGCTTAGGAATATTGAAGA
66 ATTCAAGGCCAATGACATTGGGCTTAGGAATATTGAAGA
*** * * *
115434 TGCCAATATGCTGATTCAAGGCCAACGATATTGGGCTTAAAAATGACAAGG-GTGCCAATGTGTT
1 TGCCAATATGCTGATTCAAGGCCAACGATATTAAACTTAAAAATGA-AAGGAATGCCAATATGCT
115498 GATTCAAGGCCAATGACATTGGGCTTAG
65 GATTCAAGGCCAATGACATTGGGCTTAG
115526 AAGTAAATGC
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
104 75 0.95
105 4 0.05
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.27
Consensus pattern (104 bp):
TGCCAATATGCTGATTCAAGGCCAACGATATTAAACTTAAAAATGAAAGGAATGCCAATATGCTG
ATTCAAGGCCAATGACATTGGGCTTAGGAATATTGAAGA
Found at i:115594 original size:32 final size:31
Alignment explanation
Indices: 115533--115610 Score: 86
Period size: 32 Copynumber: 2.5 Consensus size: 31
115523 TAGAAGTAAA
* *
115533 TGCCACTGACTTGTGTGAGCTTTTGAAAGGG
1 TGCCACCGACTTGTGTGAGCTTTGGAAAGGG
*
115564 TTGCCACCGACTTGTGTGGGC-TTGGAAAAGGG
1 -TGCCACCGACTTGTGTGAGCTTTGG-AAAGGG
* *
115596 TGCCACGGAGTTGTG
1 TGCCACCGACTTGTG
115611 AGCTTAAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
31 16 0.40
32 24 0.60
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.28
Consensus pattern (31 bp):
TGCCACCGACTTGTGTGAGCTTTGGAAAGGG
Found at i:115624 original size:27 final size:27
Alignment explanation
Indices: 115589--115647 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
115579 GTGGGCTTGG
* *
115589 AAAAGGGTGCCACGGAGTTGTGAGCTT
1 AAAAAGGTGCCACGGAGTCGTGAGCTT
*
115616 AAAAAGGTGCCACGGAGTCGTGGGCTT
1 AAAAAGGTGCCACGGAGTCGTGAGCTT
115643 AAAAA
1 AAAAA
115648 TGTGAGGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.15, G:0.34, T:0.19
Consensus pattern (27 bp):
AAAAAGGTGCCACGGAGTCGTGAGCTT
Found at i:117099 original size:1 final size:1
Alignment explanation
Indices: 117093--117134 Score: 57
Period size: 1 Copynumber: 42.0 Consensus size: 1
117083 CATCCATACC
* * *
117093 TTTTTTTTGTTTTTTTTTGTTTTTTTGTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
117135 ACAGAGTACG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (1 bp):
T
Found at i:117108 original size:10 final size:10
Alignment explanation
Indices: 117093--117134 Score: 63
Period size: 10 Copynumber: 4.5 Consensus size: 10
117083 CATCCATACC
117093 TTTTTTTTGT
1 TTTTTTTTGT
117103 TTTTTTTTG-
1 TTTTTTTTGT
117112 -TTTTTTTGT
1 TTTTTTTTGT
117121 TTTTTTTT-T
1 TTTTTTTTGT
117130 TTTTT
1 TTTTT
117135 ACAGAGTACG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 8 0.27
9 6 0.20
10 16 0.53
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (10 bp):
TTTTTTTTGT
Found at i:117115 original size:18 final size:17
Alignment explanation
Indices: 117093--117134 Score: 75
Period size: 18 Copynumber: 2.4 Consensus size: 17
117083 CATCCATACC
117093 TTTTTTTTGTTTTTTTT
1 TTTTTTTTGTTTTTTTT
117110 TGTTTTTTTGTTTTTTTT
1 T-TTTTTTTGTTTTTTTT
117128 TTTTTTT
1 TTTTTTT
117135 ACAGAGTACG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (17 bp):
TTTTTTTTGTTTTTTTT
Found at i:129617 original size:19 final size:20
Alignment explanation
Indices: 129593--129643 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
129583 AGATACAATA
**
129593 TATCGATACATGTTC-ATTG
1 TATCGATACATGGACAATTG
129612 TATCGATACATGGACAATTG
1 TATCGATACATGGACAATTG
129632 TATCGATACATG
1 TATCGATACATG
129644 AAACTGGCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (20 bp):
TATCGATACATGGACAATTG
Found at i:129710 original size:33 final size:32
Alignment explanation
Indices: 129673--129735 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 32
129663 TACCACTGTT
129673 TGTATCGATACATG-GCACATTGTATCGATAGAA
1 TGTATCGATACATGAG-A-ATTGTATCGATAGAA
129706 TGTATCGATACATGATGAATTGTATCGATA
1 TGTATCGATACATGA-GAATTGTATCGATA
129736 TATTGCTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 26 0.93
34 1 0.04
35 1 0.04
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (32 bp):
TGTATCGATACATGAGAATTGTATCGATAGAA
Found at i:135993 original size:21 final size:22
Alignment explanation
Indices: 135969--136018 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
135959 ATCAAATTTT
* *
135969 CTTCAAATTTCTT-ATTTTTCA
1 CTTCAAAATACTTCATTTTTCA
135990 CTTCAAAATACTTCATTTTTCA
1 CTTCAAAATACTTCATTTTTCA
136012 --TCAAAAT
1 CTTCAAAAT
136019 CATCAACCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 7 0.27
21 11 0.42
22 8 0.31
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (22 bp):
CTTCAAAATACTTCATTTTTCA
Found at i:137791 original size:21 final size:23
Alignment explanation
Indices: 137751--137793 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
137741 TTTTAACTGA
*
137751 TTATCAAGGGGGAGAAATTTTTT
1 TTATCAAGAGGGAGAAATTTTTT
137774 TTATCAA-AGGGA-AAATTTTT
1 TTATCAAGAGGGAGAAATTTTT
137794 AACAAGAGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 4 0.21
23 7 0.37
ACGTcount: A:0.35, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
TTATCAAGAGGGAGAAATTTTTT
Found at i:141211 original size:26 final size:26
Alignment explanation
Indices: 141175--141253 Score: 81
Period size: 26 Copynumber: 3.0 Consensus size: 26
141165 TATAGAGATA
* *
141175 GAATTAATAAAATTCAACTTTATCTG
1 GAATTGATAAAGTTCAACTTTATCTG
* *
141201 GAATTGATAAAGTACAACATTATCTAG
1 GAATTGATAAAGTTCAACTTTATCT-G
*
141228 G-A-TGACTAAAGTTGAACTTTATCTG
1 GAATTGA-TAAAGTTCAACTTTATCTG
141253 G
1 G
141254 GATTCTAGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
25 5 0.11
26 37 0.84
27 2 0.05
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.34
Consensus pattern (26 bp):
GAATTGATAAAGTTCAACTTTATCTG
Found at i:142081 original size:22 final size:23
Alignment explanation
Indices: 142056--142104 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
142046 TTAACCTAAT
*
142056 CCTCTAAG-CCTTAAATCTTTAA
1 CCTCTAAGCCCATAAATCTTTAA
*
142078 CCTC-GAGCCCATAAATCTTTAA
1 CCTCTAAGCCCATAAATCTTTAA
142100 CCTCT
1 CCTCT
142105 TTTGTTGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.29, C:0.33, G:0.06, T:0.33
Consensus pattern (23 bp):
CCTCTAAGCCCATAAATCTTTAA
Found at i:142764 original size:16 final size:15
Alignment explanation
Indices: 142734--142767 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
142724 TATGATATAG
*
142734 TTAATTTTATGTTAA
1 TTAATTTTATCTTAA
142749 TTAATTATTATCTTAA
1 TTAATT-TTATCTTAA
142765 TTA
1 TTA
142768 TTCATGTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (15 bp):
TTAATTTTATCTTAA
Found at i:142905 original size:16 final size:15
Alignment explanation
Indices: 142865--142918 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 15
142855 CTATTTTATT
*
142865 TTATTTATATTTTAAG
1 TTATTTAT-TTTTAAA
142881 TTATTTATTTTTCAAA
1 TTATTTATTTTT-AAA
*
142897 TTATTTATTTTGATAA
1 TTATTTATTTTTA-AA
142913 TTATTT
1 TTATTT
142919 GCATCATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 5 0.15
16 29 0.85
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (15 bp):
TTATTTATTTTTAAA
Found at i:143553 original size:34 final size:34
Alignment explanation
Indices: 143515--143697 Score: 303
Period size: 34 Copynumber: 5.4 Consensus size: 34
143505 CTTTGTTAAG
143515 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
143549 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
143583 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
* *
143617 TGTATTTGGTGAGAATATTAGATGTGTTAGGTGA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
* * *
143651 TGTATTTGGTGAAAATATTAGGTGTGTTAGGTAA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
* *
143685 TGTGTTAGGTGAG
1 TGTATTTGGTGAG
143698 TAAGATATTT
Statistics
Matches: 141, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 141 1.00
ACGTcount: A:0.23, C:0.00, G:0.36, T:0.41
Consensus pattern (34 bp):
TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
Found at i:148441 original size:34 final size:34
Alignment explanation
Indices: 148403--148585 Score: 294
Period size: 34 Copynumber: 5.4 Consensus size: 34
148393 CTTTGTTAAG
148403 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
148437 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
148471 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
* * *
148505 TGTATTTGGTGAGAATATTAGATGTGTTAGGTAA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
* * *
148539 TGTATTTGGTGAAAATATTAGGTGTGTTAGGTAA
1 TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
* *
148573 TGTGTTAGGTGAG
1 TGTATTTGGTGAG
148586 TAAGATATTT
Statistics
Matches: 141, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 141 1.00
ACGTcount: A:0.23, C:0.00, G:0.36, T:0.41
Consensus pattern (34 bp):
TGTATTTGGTGAGAATGTTAGGTGTGTTAGGTGA
Found at i:149434 original size:2 final size:2
Alignment explanation
Indices: 149427--149472 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
149417 GTTTTTGCAC
* *
149427 GT GT GT GT GT GT GT AT AT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
149469 GT GT
1 GT GT
149473 AAAATAAGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.04, C:0.00, G:0.46, T:0.50
Consensus pattern (2 bp):
GT
Found at i:153142 original size:42 final size:42
Alignment explanation
Indices: 153083--153163 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
153073 TAGTGATCTA
*
153083 GTTAAAAAACATGTATATATGGCTTCTGGTTATGTGGATCAG
1 GTTAAAAAACATGTATATATGGCTTATGGTTATGTGGATCAG
153125 GTTAAAAAACATGTATATATGGCTTATGGTTATGTGGAT
1 GTTAAAAAACATGTATATATGGCTTATGGTTATGTGGAT
153164 GTATGTTTTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.37
Consensus pattern (42 bp):
GTTAAAAAACATGTATATATGGCTTATGGTTATGTGGATCAG
Found at i:156646 original size:35 final size:34
Alignment explanation
Indices: 156597--156668 Score: 92
Period size: 36 Copynumber: 2.1 Consensus size: 34
156587 TAAAAATATC
* *
156597 AATTTTTTTGTAAAA-ATAAAAGGAATTTAAAAA
1 AATTTTTTTGTAAAATATAAAAAGAAATTAAAAA
*
156630 AATTATTTTCTGTAAAATATAAAAATAAATTAAAAA
1 AATT-TTTT-TGTAAAATATAAAAAGAAATTAAAAA
156666 AAT
1 AAT
156669 CTTAATTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 4 0.12
34 4 0.12
35 7 0.21
36 18 0.55
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (34 bp):
AATTTTTTTGTAAAATATAAAAAGAAATTAAAAA
Found at i:158074 original size:15 final size:15
Alignment explanation
Indices: 158054--158108 Score: 51
Period size: 14 Copynumber: 3.6 Consensus size: 15
158044 TTTTATACAA
158054 AAAATTATAAATATT
1 AAAATTATAAATATT
158069 AAAATT-TAAA-ATTT
1 AAAATTATAAATA-TT
*
158083 AAATTTATTAAATATAT
1 AAAATTA-TAAATAT-T
*
158100 ATAATTATA
1 AAAATTATA
158109 TATCAATTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
13 1 0.03
14 11 0.34
15 6 0.19
16 7 0.22
17 7 0.22
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
AAAATTATAAATATT
Found at i:158163 original size:2 final size:2
Alignment explanation
Indices: 158156--158197 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
158146 TCTATAGTAG
158156 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
158198 AACTTTTGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:165685 original size:21 final size:21
Alignment explanation
Indices: 165617--165674 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
165607 AAAAATAATG
*
165617 ATAATAATAAAATTAATTATT
1 ATAATAATAAAATTAAGTATT
**
165638 ATAGCAATAAAATTAAGTATT
1 ATAATAATAAAATTAAGTATT
165659 ATAATAATAAAATTAA
1 ATAATAATAAAATTAA
165675 AATTAATAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (21 bp):
ATAATAATAAAATTAAGTATT
Found at i:165776 original size:35 final size:34
Alignment explanation
Indices: 165737--165943 Score: 165
Period size: 35 Copynumber: 6.4 Consensus size: 34
165727 ATTAAAATAT
* *
165737 TTATATATATAATAAATAATTAAAAATTATTAAAA
1 TTATATTTATATTAAATAA-TAAAAATTATTAAAA
*
165772 TTATATTTATGTTAAATAAT-AAAA-TA-T-AAA
1 TTATATTTATATTAAATAATAAAAATTATTAAAA
* *
165802 -TA-AATTATATT--AT--TAAATAATAATT-AAA
1 TTATATTTATATTAAATAATAAA-AATTATTAAAA
* *
165830 TTATTTTTATATTAAATAATAAAATATAAATTAAAA
1 TTATATTTATATTAAATAATAAAA-AT-TATTAAAA
* * *
165866 TGAT-TTTATGTTAAATAATTACAAATTATTAAAA
1 TTATATTTATATTAAATAA-TAAAAATTATTAAAA
165900 TTATATTTATATTAAA-AAT--AAATTATTAAAAA
1 TTATATTTATATTAAATAATAAAAATTATT-AAAA
165932 TTATATTTATAT
1 TTATATTTATAT
165944 CTATATTTAT
Statistics
Matches: 142, Mismatches: 14, Indels: 35
0.74 0.07 0.18
Matches are distributed among these distances:
24 1 0.01
25 2 0.01
26 4 0.03
27 1 0.01
28 11 0.08
29 4 0.03
30 10 0.07
31 9 0.06
32 20 0.14
33 6 0.04
34 19 0.13
35 45 0.32
36 10 0.07
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (34 bp):
TTATATTTATATTAAATAATAAAAATTATTAAAA
Found at i:165951 original size:44 final size:47
Alignment explanation
Indices: 165901--165989 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 47
165891 TTATTAAAAT
165901 TATATTTATATTAAA-AAT-AA-AT-TATTAAAAATTATATTTATATC
1 TATATTTATATTAAATAATAAATATATATTAAAAA-TATATTTATATC
165945 TATATTTATATTAAATAATAAAATATATATTAAAAATATATTTAT
1 TATATTTATATTAAATAAT-AAATATATATTAAAAATATATTTAT
165990 TAAATAATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
44 15 0.38
45 3 0.08
47 2 0.05
48 11 0.28
49 9 0.22
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (47 bp):
TATATTTATATTAAATAATAAATATATATTAAAAATATATTTATATC
Found at i:165975 original size:19 final size:18
Alignment explanation
Indices: 165951--165999 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 18
165941 TATCTATATT
165951 TATATTAAATAATAAAATA
1 TATATTAAATAAT-AAATA
165970 TATATTAAA-AAT--ATA
1 TATATTAAATAATAAATA
*
165985 TTTATTAAATAATAA
1 TATATTAAATAATAA
166000 TTAAAATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
15 11 0.42
16 3 0.12
18 3 0.12
19 9 0.35
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TATATTAAATAATAAATA
Found at i:166002 original size:26 final size:25
Alignment explanation
Indices: 165963--166033 Score: 74
Period size: 26 Copynumber: 2.7 Consensus size: 25
165953 TATTAAATAA
165963 TAAAAT-ATATATTAAAAATATA-TT
1 TAAAATAATA-ATTAAAAATATACTT
*
165987 TATTAAATAATAATTAAAATTATACTT
1 TA--AAATAATAATTAAAAATATACTT
166014 TAAAATTAATAAATTAAAAA
1 TAAAA-TAAT-AATTAAAAA
166034 AAAAAAAAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
24 2 0.05
25 3 0.08
26 19 0.49
27 15 0.38
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.39
Consensus pattern (25 bp):
TAAAATAATAATTAAAAATATACTT
Found at i:171276 original size:16 final size:16
Alignment explanation
Indices: 171228--171278 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
171218 CGAATAACTT
* *
171228 GAACCCGTAATAACCC
1 GAACCCGAAATGACCC
* *
171244 AAATCCGAAATGACCC
1 GAACCCGAAATGACCC
171260 GAACCCGAAATGACCC
1 GAACCCGAAATGACCC
171276 GAA
1 GAA
171279 TAATTAACCC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.41, C:0.33, G:0.16, T:0.10
Consensus pattern (16 bp):
GAACCCGAAATGACCC
Found at i:171752 original size:18 final size:18
Alignment explanation
Indices: 171729--171763 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
171719 TCTATTATAA
*
171729 TAATTTTAATTTTTTTAT
1 TAATTTAAATTTTTTTAT
171747 TAATTTAAATTTTTTTA
1 TAATTTAAATTTTTTTA
171764 AATTGTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TAATTTAAATTTTTTTAT
Found at i:172347 original size:53 final size:53
Alignment explanation
Indices: 172249--172350 Score: 125
Period size: 53 Copynumber: 1.9 Consensus size: 53
172239 TGAACCTAAT
*
172249 TTAACCTGAATGTTAAACCCGATTAACCCGAATCTTGAATAACCCGAACGCGA
1 TTAACCTGAATGTTAAACCCGATTAACCCGAATCTCGAATAACCCGAACGCGA
* * * * * *
172302 TTAACTTGAGTGTTAAACTCGATTAATCTGAA-CTCGAAATTACCCGAAC
1 TTAACCTGAATGTTAAACCCGATTAACCCGAATCTCG-AATAACCCGAAC
172351 TTGAAATGAC
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
52 3 0.07
53 38 0.93
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (53 bp):
TTAACCTGAATGTTAAACCCGATTAACCCGAATCTCGAATAACCCGAACGCGA
Found at i:172356 original size:16 final size:16
Alignment explanation
Indices: 172331--172445 Score: 101
Period size: 16 Copynumber: 7.2 Consensus size: 16
172321 CGATTAATCT
*
172331 GAACTCGAAATTACCC
1 GAACTCGAAATGACCC
*
172347 GAACTTGAAATGACCC
1 GAACTCGAAATGACCC
*
172363 GAACCCGAAATGACCC
1 GAACTCGAAATGACCC
* * *
172379 AAACCCGAAATGACCT
1 GAACTCGAAATGACCC
*
172395 GAA-TCCAAAGTGACCC
1 GAACTCGAAA-TGACCC
*
172411 GAAC-CTGAAATGACTC
1 GAACTC-GAAATGACCC
*
172427 GAAC-CAAAAATGACCC
1 GAACTC-GAAATGACCC
172443 GAA
1 GAA
172446 ACCGAAAACA
Statistics
Matches: 81, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
15 4 0.05
16 74 0.91
17 3 0.04
ACGTcount: A:0.41, C:0.30, G:0.17, T:0.13
Consensus pattern (16 bp):
GAACTCGAAATGACCC
Found at i:172489 original size:15 final size:15
Alignment explanation
Indices: 172471--172509 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
172461 AAAATTTTAT
*
172471 AACCCGAAATAACTC
1 AACCCAAAATAACTC
*
172486 AACCCAAAATAATTC
1 AACCCAAAATAACTC
172501 AACCCAAAA
1 AACCCAAAA
172510 CCAACTCGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.54, C:0.31, G:0.03, T:0.13
Consensus pattern (15 bp):
AACCCAAAATAACTC
Found at i:174727 original size:13 final size:14
Alignment explanation
Indices: 174705--174742 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
174695 AAAAGGCCTC
*
174705 TTTTACTTTTTTT-
1 TTTTATTTTTTTTA
174718 TTTTATTTTTTTTA
1 TTTTATTTTTTTTA
174732 TTATTATTTTT
1 TT-TTATTTTT
174743 GCTTATTAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.55
14 2 0.09
15 8 0.36
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTATTTTTTTTA
Found at i:175993 original size:2 final size:2
Alignment explanation
Indices: 175986--176019 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
175976 ATTAATCAAA
175986 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
176020 TTGTCCAATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:182506 original size:2 final size:2
Alignment explanation
Indices: 182499--182528 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
182489 AAACAGCACA
*
182499 AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
182529 TTGGCTTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:182552 original size:4 final size:4
Alignment explanation
Indices: 182543--182569 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
182533 CTTTCTAGCA
182543 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
182570 GCACCCATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:183679 original size:17 final size:17
Alignment explanation
Indices: 183657--183711 Score: 64
Period size: 16 Copynumber: 3.4 Consensus size: 17
183647 TATTTAAAAT
183657 ATTTTATATTTATATAA
1 ATTTTATATTTATATAA
183674 ATTTTAATATGTTA-AT-A
1 ATTTT-ATAT-TTATATAA
183691 A-TTTATA-TTATATAA
1 ATTTTATATTTATATAA
183706 ATTTTA
1 ATTTTA
183712 AAATATATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
13 3 0.09
14 2 0.06
15 5 0.15
16 7 0.21
17 7 0.21
18 6 0.18
19 3 0.09
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
ATTTTATATTTATATAA
Found at i:184382 original size:20 final size:22
Alignment explanation
Indices: 184340--184388 Score: 75
Period size: 20 Copynumber: 2.3 Consensus size: 22
184330 TTTAAATATA
*
184340 AATAAATTAAGTGTTTGTTAAT
1 AATAAATTAAGTATTTGTTAAT
184362 AATAAATTAA-TATTT-TTAAT
1 AATAAATTAAGTATTTGTTAAT
184382 AATAAAT
1 AATAAAT
184389 ATCATTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 12 0.46
21 4 0.15
22 10 0.38
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (22 bp):
AATAAATTAAGTATTTGTTAAT
Found at i:184616 original size:21 final size:21
Alignment explanation
Indices: 184592--184641 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
184582 ATAATTAAAT
184592 TTAAATAAA-AATATTATTTT-A
1 TTAAATAAATAATA--ATTTTAA
184613 TTAAATAAATAATAATTTTAA
1 TTAAATAAATAATAATTTTAA
184634 TTAAATAA
1 TTAAATAA
184642 TTTTAATCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.19
21 18 0.67
22 4 0.15
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
TTAAATAAATAATAATTTTAA
Found at i:193752 original size:23 final size:22
Alignment explanation
Indices: 193710--193761 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
193700 TGTTTAATCT
* * *
193710 TTTTTTTAAATTTCATAATTTCA
1 TTTTTTTAAATTT-AAAAATTAA
*
193733 TTTTTTTAATTTTAAAAATTAA
1 TTTTTTTAAATTTAAAAATTAA
193755 TTTTTTT
1 TTTTTTT
193762 GGATAATATG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 13 0.52
23 12 0.48
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (22 bp):
TTTTTTTAAATTTAAAAATTAA
Found at i:194129 original size:162 final size:160
Alignment explanation
Indices: 193889--194448 Score: 403
Period size: 162 Copynumber: 3.4 Consensus size: 160
193879 CCTTAACTTC
* * ** * **
193889 AAAATTCTTTAAATATTATTATTTAATTACCATTAAATCAGTTTTTCAAACTTTCTTT-TATTTC
1 AAAATTCTTTAAATATTAATATTTAATT--CAGTAAATCAGTTTTGAAAAATTAATTTAT-TTTC
* **
193953 ATGAGTTTTTCATTTATCTTTTAAAATT-TTCCCATTTTTGAAATGTAGAGTTTTATTCTTCGTA
63 ATGAGTTTTTCATTT-T-TTTTAAAATTCTT-CCATTTCTGAAAAATAGAGTTTTATTCTTCGTA
* * * *
194017 AAT-TTT-TTAGGAAGATTTTTCT-TGTTTTATAATTTTT
125 AATATTTCTGA-G-AGATTTTTCTCAG-TTCA-AAATTTT
*
194054 AAAATTCTTTAAATATTAATATTTAATTCA-TAAATCAGCTTTGAAAAATTAATTTATTTTCATG
1 AAAATTCTTTAAATATTAATATTTAATTCAGTAAATCAGTTTTGAAAAATTAATTTATTTTCATG
** * *
194118 AGTTTTTCATTTTTTCCTTAAAATTCTTCTGTTTCTGAAAAATTGAGTTTTCTTCTTCGTAAATA
66 AGTTTTTCATTTTTT--TTAAAATTCTTCCATTTCTGAAAAATAGAGTTTTATTCTTCGTAAATA
194183 TTTCTGAGAGATTTTTCTCAGTTCAAAATTTT
129 TTTCTGAGAGATTTTTCTCAGTTCAAAATTTT
* * * * * * *
194215 AATATTCTTCAAATA-TCATCGTTTAATTCATAGTAAATTAGTTTTGAAAAAATCATTTATTTTC
1 AAAATTCTTTAAATATTAAT-ATTTAATTC--AGTAAATCAGTTTTGAAAAATTAATTTATTTTC
* * *
194279 ATGAGTATTTCATTTTTTCTTTAAAATTC-TCC-TATTCTCGAAAAACT-CAGTTTT-TTATTCC
63 ATGAGTTTTTCA-TTTTT-TTTAAAATTCTTCCAT-TTCT-GAAAAA-TAGAGTTTTATTCTT-C
* * * *
194340 ATAAATATTT-TCAAGGAGATTTTTCTCAATTTAAAATTTTT
122 GTAAATATTTCT-GA-GAGATTTTTCTCAGTTCAAAA-TTTT
* * * * **
194381 AAAATTCATCT-AATATT-GTCATTAAATTCACATTAAATCAGTTTTTCAAAATTCAATTTATTT
1 AAAATTC-TTTAAATATTAAT-ATTTAATT--CAGTAAATCAGTTTTGAAAAATT-AATTTATTT
194444 T-ATGA
61 TCATGA
194449 CTTCTGAATT
Statistics
Matches: 324, Mismatches: 46, Indels: 49
0.77 0.11 0.12
Matches are distributed among these distances:
160 5 0.02
161 28 0.09
162 89 0.27
163 22 0.07
164 72 0.22
165 52 0.16
166 44 0.14
167 11 0.03
168 1 0.00
ACGTcount: A:0.32, C:0.11, G:0.07, T:0.50
Consensus pattern (160 bp):
AAAATTCTTTAAATATTAATATTTAATTCAGTAAATCAGTTTTGAAAAATTAATTTATTTTCATG
AGTTTTTCATTTTTTTTAAAATTCTTCCATTTCTGAAAAATAGAGTTTTATTCTTCGTAAATATT
TCTGAGAGATTTTTCTCAGTTCAAAATTTT
Found at i:196701 original size:23 final size:23
Alignment explanation
Indices: 196670--196716 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
196660 AATGACCAGG
* *
196670 ATTTGTAAATTTCTATTTTTTTTA
1 ATTTGTAAATATAT-TTTTTTTTA
196694 ATTT-TAAATATATTTTTTTTTA
1 ATTTGTAAATATATTTTTTTTTA
196716 A
1 A
196717 CATTTTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 10 0.48
23 7 0.33
24 4 0.19
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (23 bp):
ATTTGTAAATATATTTTTTTTTA
Found at i:198862 original size:19 final size:20
Alignment explanation
Indices: 198838--198882 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
198828 ACTCAAAATC
198838 AATATAA-TAA-ATATATTT
1 AATATAATTAATATATATTT
198856 AAATATAATTAATATATATTT
1 -AATATAATTAATATATATTT
198877 AATATA
1 AATATA
198883 TTTATCATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.29
20 9 0.38
21 8 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
AATATAATTAATATATATTT
Found at i:198883 original size:11 final size:11
Alignment explanation
Indices: 198848--198883 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
198838 AATATAATAA
198848 ATATATTTAA-
1 ATATATTTAAT
*
198858 ATATAATTAAT
1 ATATATTTAAT
198869 ATATATTTAAT
1 ATATATTTAAT
198880 ATAT
1 ATAT
198884 TTATCATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
ATATATTTAAT
Found at i:198892 original size:20 final size:21
Alignment explanation
Indices: 198838--198883 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
198828 ACTCAAAATC
198838 AATATAA-TAA-ATATATTTA
1 AATATAATTAATATATATTTA
198857 AATATAATTAATATATATTTA
1 AATATAATTAATATATATTTA
198878 ATATAT
1 A-ATAT
198884 TTATCATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.29
20 3 0.12
21 10 0.42
22 4 0.17
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
AATATAATTAATATATATTTA
Found at i:204934 original size:2 final size:2
Alignment explanation
Indices: 204927--204961 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
204917 TTGAACGCAC
204927 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
204962 GTAGTGTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:205205 original size:18 final size:18
Alignment explanation
Indices: 205176--205248 Score: 76
Period size: 18 Copynumber: 3.9 Consensus size: 18
205166 TAATAAATTT
*
205176 ATATTATTTATATTTTAAA
1 ATATT-TTTATATTTTATA
*
205195 ATATTTTTATATTTTATT
1 ATATTTTTATATTTTATA
**
205213 ATATTCATATTATTTTGATA
1 ATATTTTTA-TATTTT-ATA
205233 ATA-TTTTATATTTTAT
1 ATATTTTTATATTTTAT
205249 TTTTCATATC
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
17 2 0.04
18 24 0.53
19 14 0.31
20 5 0.11
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (18 bp):
ATATTTTTATATTTTATA
Done.