Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold193
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3104049
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.32
Warning! 172765 characters in sequence are not A, C, G, or T
File 18 of 18
Found at i:2993257 original size:49 final size:49
Alignment explanation
Indices: 2993187--2993449 Score: 195
Period size: 49 Copynumber: 5.4 Consensus size: 49
2993177 TTTAGATATG
* * *
2993187 ATTTATTTTTAATTGTTAAAGTATTTTTGGATATGGTTACATAAGTTTA
1 ATTTATTTTTATTTGTAAAAGTATTTTTGGATATGATTACATAAGTTTA
* * * * *
2993236 ATTTATTTTTATTTGTAAAAGT-TTAAATTT--ATTTTATT--TTAAGGTATG
1 ATTTATTTTTATTTGTAAAAGTATT---TTTGGATATGATTACATAA-GTTTA
* * * * *
2993284 GTTTATTTTTAATTT-TTAAACTATTTTTGGATATGATTACACAAATTTA
1 ATTTATTTTT-ATTTGTAAAAGTATTTTTGGATATGATTACATAAGTTTA
* * ** * *
2993333 ATTTATTTTTATTTGTAAAAGT-TTAAATTT--ATTTTATTTTA-AAGTATG
1 ATTTATTTTTATTTGTAAAAGTATT---TTTGGATATGATTACATAAGTTTA
* *
2993381 ATTTATTTTTAATTGTTAAAGTATTTTTGGATATGATTACATAAGTTTA
1 ATTTATTTTTATTTGTAAAAGTATTTTTGGATATGATTACATAAGTTTA
2993430 ATTTATTTTTATTTGTAAAA
1 ATTTATTTTTATTTGTAAAA
2993450 ATGTGAATTG
Statistics
Matches: 158, Mismatches: 38, Indels: 36
0.68 0.16 0.16
Matches are distributed among these distances:
46 6 0.04
47 3 0.02
48 62 0.39
49 79 0.50
50 2 0.01
51 6 0.04
ACGTcount: A:0.32, C:0.02, G:0.10, T:0.56
Consensus pattern (49 bp):
ATTTATTTTTATTTGTAAAAGTATTTTTGGATATGATTACATAAGTTTA
Found at i:2993289 original size:97 final size:97
Alignment explanation
Indices: 2993183--2993487 Score: 504
Period size: 97 Copynumber: 3.2 Consensus size: 97
2993173 TTTTTTTAGA
*
2993183 TATGATTTATTTTTAATTGTTAAAGTATTTTTGGATATGGTTACATAAGTTTAATTTATTTTTAT
1 TATGATTTATTTTTAATTGTTAAAGTATTTTTGGATATGATTACATAAGTTTAATTTATTTTTAT
2993248 TTGTAAAAGTTTAAATTTATTTTATTTTAAGG
66 TTGTAAAAGTTTAAATTTATTTTATTTTAAGG
* * * * *
2993280 TATGGTTTATTTTTAATTTTTAAACTATTTTTGGATATGATTACACAAATTTAATTTATTTTTAT
1 TATGATTTATTTTTAATTGTTAAAGTATTTTTGGATATGATTACATAAGTTTAATTTATTTTTAT
*
2993345 TTGTAAAAGTTTAAATTTATTTTATTTTAAAG
66 TTGTAAAAGTTTAAATTTATTTTATTTTAAGG
2993377 TATGATTTATTTTTAATTGTTAAAGTATTTTTGGATATGATTACATAAGTTTAATTTATTTTTAT
1 TATGATTTATTTTTAATTGTTAAAGTATTTTTGGATATGATTACATAAGTTTAATTTATTTTTAT
* * * *
2993442 TTGTAAAAATGTGAA-TTGTTTTATTTTAAGG
66 TTGTAAAAGTTTAAATTTATTTTATTTTAAGG
2993473 TATGATTTATTTTTA
1 TATGATTTATTTTTA
2993488 TTTATAAGAT
Statistics
Matches: 191, Mismatches: 17, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
96 29 0.15
97 162 0.85
ACGTcount: A:0.31, C:0.02, G:0.11, T:0.56
Consensus pattern (97 bp):
TATGATTTATTTTTAATTGTTAAAGTATTTTTGGATATGATTACATAAGTTTAATTTATTTTTAT
TTGTAAAAGTTTAAATTTATTTTATTTTAAGG
Found at i:2993390 original size:48 final size:47
Alignment explanation
Indices: 2993236--2993490 Score: 153
Period size: 48 Copynumber: 5.3 Consensus size: 47
2993226 CATAAGTTTA
*
2993236 ATTTATTTTTATTTGTAAAAGTTTAAATTTATTTTATTTTAAGGTATG
1 ATTTATTTTTATTTGTAAAAGTTT-AATTTATTTTATTTTAAAGTATG
* * * * * ** * * *
2993284 GTTTATTTTTAATTTTTAAACTA-TTT--TTGGATATGATTACACAAATTTA
1 ATTTATTTTT-ATTTGTAAA--AGTTTAATT-TATTTTATTTTA-AAGTATG
2993333 ATTTATTTTTATTTGTAAAAGTTTAAATTTATTTTATTTTAAAGTATG
1 ATTTATTTTTATTTGTAAAAGTTT-AATTTATTTTATTTTAAAGTATG
* * * * ** * *
2993381 ATTTATTTTTAATTGTTAAAGTATT--TTTGGATATGATTACATAAGTTTA
1 ATTTATTTTTATTTGTAAAAGT-TTAATTT--ATTTTATTTTA-AAGTATG
* * * *
2993430 ATTTATTTTTATTTGTAAAAATGTGAA-TTGTTTTATTTTAAGGTATG
1 ATTTATTTTTATTTGTAAAAGT-TTAATTTATTTTATTTTAAAGTATG
2993477 ATTTATTTTTATTT
1 ATTTATTTTTATTT
2993491 ATAAGATTAG
Statistics
Matches: 150, Mismatches: 42, Indels: 31
0.67 0.19 0.14
Matches are distributed among these distances:
46 4 0.03
47 23 0.15
48 61 0.41
49 54 0.36
50 7 0.05
51 1 0.01
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (47 bp):
ATTTATTTTTATTTGTAAAAGTTTAATTTATTTTATTTTAAAGTATG
Found at i:2993404 original size:25 final size:26
Alignment explanation
Indices: 2993332--2993404 Score: 82
Period size: 25 Copynumber: 3.0 Consensus size: 26
2993322 ACACAAATTT
* * *
2993332 AATTTATTTTTATTTGTAAAAGTTTA
1 AATTTATTTTTAATTGTTAAAGTATA
2993358 AATTTA-TTTT-ATT-TTAAAGTAT-
1 AATTTATTTTTAATTGTTAAAGTATA
*
2993380 GATTTATTTTTAATTGTTAAAGTAT
1 AATTTATTTTTAATTGTTAAAGTAT
2993405 TTTTGGATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
22 5 0.12
23 11 0.28
24 5 0.12
25 13 0.32
26 6 0.15
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (26 bp):
AATTTATTTTTAATTGTTAAAGTATA
Found at i:2993820 original size:72 final size:72
Alignment explanation
Indices: 2993509--2993842 Score: 368
Period size: 73 Copynumber: 4.6 Consensus size: 72
2993499 AGTTTGATTA
* * * * * *** *
2993509 AAGGTATTATTCATTTTTATTTATAGAAGTTTAAATTTGTTTGCAGAGTATGATTATATAAGTTT
1 AAGGTATAATTTATTTTTATTTGTAAAAATTTAAATTTGTTTTTTG-GTATGATTATACAAGTTT
2993574 AAATTTTG
65 AAATTTTG
* ** * * **
2993582 AAGGTATAATTTATTTTTATTTGTAAAAGTTTAAATTTAATTTTT-ATTTGATTATTTAAGTTTA
1 AAGGTATAATTTATTTTTATTTGTAAAAATTTAAATTTGTTTTTTGGTATGATTATACAAGTTTA
2993646 AATTTT-
66 AATTTTG
* * * * *
2993652 AAGGGTATAATTTATTTTGATTTGTAAAAATTTAAATGTATTTTTAGGTATGATTATACCAGTTT
1 AA-GGTATAATTTATTTTTATTTGTAAAAATTTAAATTTGTTTTTTGGTATGATTATACAAGTTT
2993717 AAATTTTTG
65 AAA-TTTTG
* * *
2993726 AAGGTGTAATTTATTTTTATTTGTAGAAATTTAAATTTGTTTTTTGGTTTGATTATACAAGTTTA
1 AAGGTATAATTTATTTTTATTTGTAAAAATTTAAATTTGTTTTTTGGTATGATTATACAAGTTTA
2993791 AAGTTTT-
66 AA-TTTTG
* * *
2993798 AGGGTATTATTTATCTTTATTTGTAAAAATTTAAATTTGTTTTTT
1 AAGGTATAATTTATTTTTATTTGTAAAAATTTAAATTTGTTTTTT
2993843 AGATATAAGA
Statistics
Matches: 221, Mismatches: 36, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
70 2 0.01
71 60 0.27
72 56 0.25
73 101 0.46
74 2 0.01
ACGTcount: A:0.32, C:0.02, G:0.13, T:0.53
Consensus pattern (72 bp):
AAGGTATAATTTATTTTTATTTGTAAAAATTTAAATTTGTTTTTTGGTATGATTATACAAGTTTA
AATTTTG
Found at i:2993832 original size:145 final size:143
Alignment explanation
Indices: 2993506--2993833 Score: 410
Period size: 144 Copynumber: 2.3 Consensus size: 143
2993496 ATTAGTTTGA
* * * * * * * *
2993506 TTAAAGGTATTATTCATTTTTATTTATAGAAGTTTAAATTTGTTTGCAGAGTATGATTATATAAG
1 TTAAGGGTATTATTTA-TTTTATTTGTAAAAATTTAAATGTATTTGCAGAGTATGATTATACAAG
2993571 TTTAAATTTTGAAGGTATAATTTATTTTTATTTGTAAAAGTTTAAATTTAATTTTTATTTGATTA
65 TTTAAATTTTGAAGGTATAATTTATTTTTATTTGTAAAAGTTTAAATTTAATTTTTATTTGATTA
**
2993636 TTTAAGTTTAAATT
130 TACAAGTTTAAATT
* ** *
2993650 TTAAGGGTATAATTTATTTTGATTTGTAAAAATTTAAATGTATTTTTAG-GTATGATTATACCAG
1 TTAAGGGTATTATTTATTTT-ATTTGTAAAAATTTAAATGTATTTGCAGAGTATGATTATACAAG
* ** *
2993714 TTTAAATTTTTGAAGGTGTAATTTATTTTTATTTGTAGAAA-TTTAAATTTGTTTTTTGGTTTGA
65 TTTAAA-TTTTGAAGGTATAATTTATTTTTATTTGTA-AAAGTTTAAATTTAATTTTT-ATTTGA
2993778 TTATACAAGTTTAAAGTT
127 TTATACAAGTTTAAA-TT
2993796 TT-AGGGTATTATTTATCTTTATTTGTAAAAATTTAAAT
1 TTAAGGGTATTATTTAT-TTTATTTGTAAAAATTTAAAT
2993834 TTGTTTTTTA
Statistics
Matches: 159, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
143 23 0.14
144 77 0.48
145 52 0.33
146 7 0.04
ACGTcount: A:0.33, C:0.02, G:0.13, T:0.52
Consensus pattern (143 bp):
TTAAGGGTATTATTTATTTTATTTGTAAAAATTTAAATGTATTTGCAGAGTATGATTATACAAGT
TTAAATTTTGAAGGTATAATTTATTTTTATTTGTAAAAGTTTAAATTTAATTTTTATTTGATTAT
ACAAGTTTAAATT
Found at i:2994989 original size:104 final size:104
Alignment explanation
Indices: 2994809--2995013 Score: 374
Period size: 104 Copynumber: 2.0 Consensus size: 104
2994799 ACATATAGCT
2994809 TTTAATCTATAAATATTATCCACATATTCCATGTAATCTATATAGACATGAGTACAAGTAGCAAA
1 TTTAATCTATAAATATTATCCACATATTCCATGTAATCTATATAGACATGAGTACAAGTAGCAAA
*
2994874 AACATGTGAACATAAGAACCTTTGTGCTTGTAACTTCCC
66 AACATGTGAACATAAGAACCTTTGTACTTGTAACTTCCC
* *
2994913 TTTAATCTATAAATATTATCCACATATTCCATGTAATCTATATAGACATGAGTACAAGTATCAAC
1 TTTAATCTATAAATATTATCCACATATTCCATGTAATCTATATAGACATGAGTACAAGTAGCAAA
*
2994978 AACATGTGAACATGAGAACCTTTGTACTTGTAACTT
66 AACATGTGAACATAAGAACCTTTGTACTTGTAACTT
2995014 TCCACTGTCA
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
104 97 1.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.34
Consensus pattern (104 bp):
TTTAATCTATAAATATTATCCACATATTCCATGTAATCTATATAGACATGAGTACAAGTAGCAAA
AACATGTGAACATAAGAACCTTTGTACTTGTAACTTCCC
Found at i:2997250 original size:20 final size:20
Alignment explanation
Indices: 2997225--2997281 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
2997215 TTTTACCCAG
*
2997225 ATGTATCAATACATTTTTCA
1 ATGTATCAATACATTCTTCA
*
2997245 ATGTATCGATACATTCTTCA
1 ATGTATCAATACATTCTTCA
* *
2997265 ATGTATCGATATATTCT
1 ATGTATCAATACATTCT
2997282 GTCTTTTTAC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.32, C:0.16, G:0.09, T:0.44
Consensus pattern (20 bp):
ATGTATCAATACATTCTTCA
Found at i:3011831 original size:52 final size:52
Alignment explanation
Indices: 3011753--3011852 Score: 164
Period size: 52 Copynumber: 1.9 Consensus size: 52
3011743 CGAAATATGA
* *
3011753 AAATTTGTCTGCATGTATCGATACATTTCATAGTGTATCGATACATTTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGCATCGATACATTTGGGC
* *
3011805 AAATTTGCCTGTATGTATCGATACATTTCATGGTGCATCGATACATTT
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGCATCGATACATTT
3011853 CATGGTGTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGCATCGATACATTTGGGC
Found at i:3011846 original size:20 final size:20
Alignment explanation
Indices: 3011821--3011870 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
3011811 GCCTGTATGT
3011821 ATCGATACATTTCATGGTGC
1 ATCGATACATTTCATGGTGC
*
3011841 ATCGATACATTTCATGGTGT
1 ATCGATACATTTCATGGTGC
3011861 ATCGATACAT
1 ATCGATACAT
3011871 CTGGGCAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (20 bp):
ATCGATACATTTCATGGTGC
Found at i:3011917 original size:72 final size:71
Alignment explanation
Indices: 3011766--3011921 Score: 224
Period size: 72 Copynumber: 2.2 Consensus size: 71
3011756 TTTGTCTGCA
* * *
3011766 TGTATCGATACATTTCATAGTGTATCGATACATTTGGGCAAATTTGCCTGTATGTATCGATACAT
1 TGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAATTTGCCTGCATGTATCGATACAG
*
3011831 TTCATGG
66 ATCA-GG
* *
3011838 TGCATCGATACATTTCATGGTGTATCGATACATCTGGGCAAATTTGCCTGCATGTATCGATACAA
1 TGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAATTTGCCTGCATGTATCGATAC--
3011903 AGATCA-G
64 AGATCAGG
3011910 TGTATCGATACA
1 TGTATCGATACA
3011922 ATGTATCGAT
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
72 71 0.95
74 4 0.05
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (71 bp):
TGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAATTTGCCTGCATGTATCGATACAG
ATCAGG
Found at i:3011928 original size:13 final size:13
Alignment explanation
Indices: 3011910--3011934 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3011900 CAAAGATCAG
3011910 TGTATCGATACAA
1 TGTATCGATACAA
3011923 TGTATCGATACA
1 TGTATCGATACA
3011935 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3012015 original size:32 final size:32
Alignment explanation
Indices: 3011979--3012049 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 32
3011969 AGCTTCGTAG
3011979 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
* * *
3012011 CGATATATTGTATCGATACAACACTTTTGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
3012043 CTATACA
1 CGATACA
3012050 AATCGTTGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:3014245 original size:20 final size:20
Alignment explanation
Indices: 3014220--3014273 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
3014210 ATACCACTGT
*
3014220 TTGTATCGATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
3014240 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
*
3014260 TTGTATTGATACAT
1 TTGTATCGATACAT
3014274 TGCTTCAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:3020572 original size:22 final size:21
Alignment explanation
Indices: 3020554--3020594 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
3020544 TTTAAATTTC
3020554 TTATTTTTCACTTCAAAA-TACT
1 TTATTTTTCA--TCAAAATTACT
3020576 TTATTTTTCATCAAAATTA
1 TTATTTTTCATCAAAATTA
3020595 TCAACAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 2 0.11
22 10 0.56
ACGTcount: A:0.34, C:0.15, G:0.00, T:0.51
Consensus pattern (21 bp):
TTATTTTTCATCAAAATTACT
Found at i:3023036 original size:20 final size:19
Alignment explanation
Indices: 3023011--3023064 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 19
3023001 CTACCACTGT
3023011 TTGTATCGATACATG-GCACA
1 TTGTATCGATACATGAG-A-A
3023031 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGA-GAA
3023051 TTGTATCGATACAT
1 TTGTATCGATACAT
3023065 TGCTTCAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 30 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (19 bp):
TTGTATCGATACATGAGAA
Found at i:3025996 original size:28 final size:28
Alignment explanation
Indices: 3025962--3026375 Score: 435
Period size: 28 Copynumber: 14.8 Consensus size: 28
3025952 CGTTCATCTC
* * *
3025962 TTCAAAGTCCACAGGTCAGTGGCATCAT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
3025990 TTCAAAGCCCACAAGTCAGTGGCATCAT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
3026018 TTCAAAGCCCACAAGTCAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
3026046 TTCAAAGCCCACAGGTCAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
3026074 TTGAAAGTCCACAAGTCAGTGGCAT-CT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
3026101 CTTCAAAGCCCACAGGTCAGTGACATCCT
1 -TTCAAAGCCCACAAGTCAGTGGCATCCT
*
3026130 TTTAAAGCCCACAAGTCAGTGGCAT-CT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
3026157 CTTCAAAGCCCATAGGTCAGTAGCATCCT
1 -TTCAAAGCCCACAAGTCAGTGGCATCCT
** *
3026186 TTCAAATTCCACAAG-CTAGTGGCATCTT
1 TTCAAAGCCCACAAGTC-AGTGGCATCCT
* *
3026214 TTCAAAGCCCACAAGTTAATGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
3026242 TTCAAAGTCCACAAGTCAATGGCA-CCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCC-T
** * *
3026270 TTTTAAGCCCACAAGTCAATGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
3026298 TTCAAAGCCCATAAG-CAAGTGGCACCCTT
1 TTCAAAGCCCACAAGTC-AGTGGCATCC-T
* *
3026327 TTTAAA-CCCACAAGTCGGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
3026354 TCCAAAGCCCACAGGTTAGTGG
1 TTCAAAGCCCACAAGTCAGTGG
3026376 TACCTCTTTT
Statistics
Matches: 326, Mismatches: 48, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
27 12 0.04
28 301 0.92
29 13 0.04
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCATCCT
Found at i:3026049 original size:56 final size:56
Alignment explanation
Indices: 3025962--3026415 Score: 482
Period size: 56 Copynumber: 8.0 Consensus size: 56
3025952 CGTTCATCTC
* * * *
3025962 TTCAAAGTCCACAGGTCAGTGGCATCATTTCAAAGCCCACAAGTCAGTGGCATCAT
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
* *
3026018 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAGGTCAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
* * * * *
3026074 TTGAAAGTCCACAAGTCAGTGGCATCTCTTCAAAGCCCACAGGTCAGTGACATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
* * * * *
3026130 TTTAAAGCCCACAAGTCAGTGGCATCTCTTCAAAGCCCATAGGTCAGTAGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
** * *
3026186 TTCAAATTCCACAAG-CTAGTGGCATCTTTTCAAAGCCCACAAGTTAATGGCATCCT
1 TTCAAAGCCCACAAGTC-AGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
* * * ** * *
3026242 TTCAAAGTCCACAAGTCAATGGCACCTTTTTTAAGCCCACAAGTCAATGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
* * * *
3026298 TTCAAAGCCCATAAG-CAAGTGGCACCCTTTTTAAA-CCCACAAGTCGGTGGCATCCT
1 TTCAAAGCCCACAAGTC-AGTGGCA-TCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
* * * * * * *
3026354 TCCAAAGCCCACAGGTTAGTGGTACCTCTTTTTAAGGCCCACACAAGTCAGTGGCAACCT
1 TTCAAAGCCCACAAGTCAGTGG--CATCTTTTCAAAG-CC-CACAAGTCAGTGGCATCCT
3026414 TT
1 TT
3026416 TTCAAAACAC
Statistics
Matches: 340, Mismatches: 48, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
55 2 0.01
56 299 0.88
57 18 0.05
58 1 0.00
59 2 0.01
60 18 0.05
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (56 bp):
TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
Found at i:3027329 original size:20 final size:20
Alignment explanation
Indices: 3027304--3027378 Score: 105
Period size: 20 Copynumber: 3.8 Consensus size: 20
3027294 TTTTACCGAG
*
3027304 ATGTATCGATACATTTTTTA
1 ATGTATCGATACATTTTTAA
* * *
3027324 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTAA
*
3027344 ATGTATCGATACATTCTTAA
1 ATGTATCGATACATTTTTAA
3027364 ATGTATCGATACATT
1 ATGTATCGATACATT
3027379 CTATCTTTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTAA
Found at i:3032862 original size:31 final size:30
Alignment explanation
Indices: 3032791--3032888 Score: 99
Period size: 31 Copynumber: 3.2 Consensus size: 30
3032781 AAAGGCTACC
* * *
3032791 GTGGGAGCTGCTGAAGCTGCTGGAGGCTA-CC
1 GTGGGAGCTGCTGAAGTTGCTGTAGG--AGCA
*
3032822 GTGGAAGCTGCTGAAAGTTGCTGTAGGAGCA
1 GTGGGAGCTGCTG-AAGTTGCTGTAGGAGCA
* *
3032853 GTGGGAGCTGCTGGAAGTTACTGTAGGAGCT
1 GTGGGAGCTGCT-GAAGTTGCTGTAGGAGCA
3032884 GTGGG
1 GTGGG
3032889 GGTTGCTCGT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
30 1 0.02
31 44 0.77
32 12 0.21
ACGTcount: A:0.19, C:0.15, G:0.43, T:0.22
Consensus pattern (30 bp):
GTGGGAGCTGCTGAAGTTGCTGTAGGAGCA
Found at i:3032961 original size:22 final size:22
Alignment explanation
Indices: 3032936--3032992 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
3032926 GGGAGCTGCT
*
3032936 GGAGCTTCTGGAGGCTACCGTG
1 GGAGCTGCTGGAGGCTACCGTG
*
3032958 GGAGCTGCTGGAGGCTGCCGTG
1 GGAGCTGCTGGAGGCTACCGTG
* *
3032980 GAAACTGCTGGAG
1 GGAGCTGCTGGAG
3032993 TTGCTGGAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.16, C:0.21, G:0.44, T:0.19
Consensus pattern (22 bp):
GGAGCTGCTGGAGGCTACCGTG
Found at i:3032998 original size:133 final size:132
Alignment explanation
Indices: 3032692--3033004 Score: 324
Period size: 133 Copynumber: 2.3 Consensus size: 132
3032682 CTGAGCTGCT
* * * * *
3032692 GGAGCTACTGGAGGCTGTCGTGGAAGCTGTTGGAGCTGCTAGAAGTTGCTATGGGAGCTGTGGGA
1 GGAGCTGCTGGAGGCTGCCGTGGAAGCTG-TGGAGCTGCTGGAAGTTACTATAGGAGCTGTGGGA
*
3032757 GCTGCTCAAGACTGCTGAGTTGCTAAAGGCTACCGTGGGAGCTGCTGAAGCTGCTGGAGGCTACC
65 GCTGCTCAAGACTGCTGAGCTGCTAAAGGCTACCGTGGGAGCTGCTGAAGCTGCTGGAGGCTACC
3032822 GTG
130 GTG
* * * * * * *
3032825 GAAGCTGCTGAAAGTTGCTGTAGG-AGCAGTGGGAGCTGCTGGAAGTTACTGTAGGAGCTGTGGG
1 GGAGCTGCTGGAGGCTGCCGT-GGAAGCTGT-GGAGCTGCTGGAAGTTACTATAGGAGCTGTGGG
* * ** ** * * ** * *
3032889 GGTTGCTCGTGGTTGCTGAGCTGTTGGAA-GCTGTCGTGGGAGCTGCTGGAGCTTCTGGAGGCTA
64 AGCTGCTCAAGACTGCTGAGCTGCT-AAAGGCTACCGTGGGAGCTGCTGAAGCTGCTGGAGGCTA
3032953 CCGTG
128 CCGTG
* *
3032958 GGAGCTGCTGGAGGCTGCCGTGGAAACTGCTGGAGTTGCTGGAAGTT
1 GGAGCTGCTGGAGGCTGCCGTGGAAGCTG-TGGAGCTGCTGGAAGTT
3033005 GTTGAGTTGC
Statistics
Matches: 142, Mismatches: 33, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
132 3 0.02
133 134 0.94
134 5 0.04
ACGTcount: A:0.17, C:0.17, G:0.41, T:0.25
Consensus pattern (132 bp):
GGAGCTGCTGGAGGCTGCCGTGGAAGCTGTGGAGCTGCTGGAAGTTACTATAGGAGCTGTGGGAG
CTGCTCAAGACTGCTGAGCTGCTAAAGGCTACCGTGGGAGCTGCTGAAGCTGCTGGAGGCTACCG
TG
Found at i:3033004 original size:10 final size:10
Alignment explanation
Indices: 3032985--3033056 Score: 51
Period size: 10 Copynumber: 7.3 Consensus size: 10
3032975 CCGTGGAAAC
3032985 TGCTGG-AGT
1 TGCTGGAAGT
3032994 TGCTGGAAGT
1 TGCTGGAAGT
*
3033004 TG-TTG-AGT
1 TGCTGGAAGT
* *
3033012 TGCTGGAGGC
1 TGCTGGAAGT
* *
3033022 TGCCGTGGGAGC
1 TG-C-TGGAAGT
3033034 TGCTGGAAGT
1 TGCTGGAAGT
*
3033044 TGCTGGAGGT
1 TGCTGGAAGT
3033054 TGC
1 TGC
3033057 GGTGGTCTCT
Statistics
Matches: 49, Mismatches: 9, Indels: 9
0.73 0.13 0.13
Matches are distributed among these distances:
8 5 0.10
9 10 0.20
10 25 0.51
11 2 0.04
12 7 0.14
ACGTcount: A:0.12, C:0.14, G:0.44, T:0.29
Consensus pattern (10 bp):
TGCTGGAAGT
Found at i:3033982 original size:10 final size:11
Alignment explanation
Indices: 3033957--3033996 Score: 71
Period size: 11 Copynumber: 3.6 Consensus size: 11
3033947 AAATTTTTAT
3033957 TTTTTATTAAC
1 TTTTTATTAAC
3033968 TTTTTATTAAC
1 TTTTTATTAAC
*
3033979 TTTTTATTAAT
1 TTTTTATTAAC
3033990 TTTTTAT
1 TTTTTAT
3033997 ATTATTATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTTATTAAC
Found at i:3034007 original size:13 final size:12
Alignment explanation
Indices: 3033956--3034010 Score: 53
Period size: 11 Copynumber: 4.7 Consensus size: 12
3033946 AAAATTTTTA
3033956 TTTTTTATTAA-
1 TTTTTTATTAAT
*
3033967 CTTTTTATTAA-
1 TTTTTTATTAAT
*
3033978 CTTTTTATTAAT
1 TTTTTTATTAAT
3033990 TTTTTATATT-AT
1 TTTTT-TATTAAT
3034002 TATTTTTAT
1 T-TTTTTAT
3034011 GTTGAAAACC
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
11 21 0.54
12 10 0.26
13 8 0.21
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTTTTATTAAT
Found at i:3035709 original size:91 final size:92
Alignment explanation
Indices: 3035602--3035779 Score: 236
Period size: 91 Copynumber: 1.9 Consensus size: 92
3035592 CAACTGTGAC
* * *
3035602 ATTTACAATCAATCAACTTTTCTCTT-TTTCTACCAAAAGGAATTTGATTTAT-AAATA-AATTT
1 ATTTACAATCAATCAACTTTT-TCTTCTTTATACCAAAAAGAATTTGA-TTATCAAATACAATTA
*
3035664 ATACATTAATCTAATTCTTACAGTCTTGT
64 ACACATTAATCTAATTCTTACAGTCTTGT
* * *
3035693 ATTTACAATCAATCAACTTTTTTTTCTTTATACGAAAAAGAATTTGATTATCAGATACAATTAAC
1 ATTTACAATCAATCAACTTTTTCTTCTTTATACCAAAAAGAATTTGATTATCAAATACAATTAAC
* *
3035758 GCATTAGTCTAATTCTTACAGT
66 ACATTAATCTAATTCTTACAGT
3035780 GTGACATTTA
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
90 7 0.09
91 43 0.57
92 25 0.33
ACGTcount: A:0.36, C:0.15, G:0.07, T:0.42
Consensus pattern (92 bp):
ATTTACAATCAATCAACTTTTTCTTCTTTATACCAAAAAGAATTTGATTATCAAATACAATTAAC
ACATTAATCTAATTCTTACAGTCTTGT
Found at i:3036178 original size:39 final size:39
Alignment explanation
Indices: 3036118--3036208 Score: 110
Period size: 39 Copynumber: 2.3 Consensus size: 39
3036108 TCAAAAACAC
* * *
3036118 AATTTATGCATTAGTCTCATCTTTCAAATTTTAATAAAA
1 AATTTATGCATTAATCACATCTTTCAAATTCTAATAAAA
* * *
3036157 AATTTATGTATTAATCACATCTTTCAGATTCTAATAAAT
1 AATTTATGCATTAATCACATCTTTCAAATTCTAATAAAA
* *
3036196 AATCTATACATTA
1 AATTTATGCATTA
3036209 CTAATATTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.40, C:0.13, G:0.04, T:0.43
Consensus pattern (39 bp):
AATTTATGCATTAATCACATCTTTCAAATTCTAATAAAA
Found at i:3038857 original size:97 final size:98
Alignment explanation
Indices: 3038712--3038939 Score: 275
Period size: 97 Copynumber: 2.3 Consensus size: 98
3038702 TAAAGTATCT
* * ** ** * *
3038712 CCTCAGAAGAATAGGGTTGGAGTATCCCCAATGGTGATAATTTAGGCAAAA-ATAAGATTTTAAG
1 CCTCAGAAGAATGGGGTTGGAGTATCTCTGATAATGACAATTTAGGCAAAAGATAAGATTTAAAG
*
3038776 CTTGACAAATTTAAAAA-CATGGTTGGAGTATTC
66 CTTAACAAATTTAAAAATCA-GGTTGGAGTATTC
* *
3038809 CCTCAAAAGAATGGGGTTGGAGTATCTCTGATAATGACAATTTAGGCAAAAGATAAGATTTAAAT
1 CCTCAGAAGAATGGGGTTGGAGTATCTCTGATAATGACAATTTAGGCAAAAGATAAGATTTAAAG
* *
3038874 CTTAACAAGTTTAAAAATGAGGTTGGAGTATTC
66 CTTAACAAATTTAAAAATCAGGTTGGAGTATTC
**
3038907 CCTTGGAAG-ATGGGGTTGGAGTAT-TCTCGATAA
1 CCTCAGAAGAATGGGGTTGGAGTATCTCT-GATAA
3038940 ATAAAACTTT
Statistics
Matches: 112, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
96 3 0.03
97 63 0.56
98 45 0.40
99 1 0.01
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.29
Consensus pattern (98 bp):
CCTCAGAAGAATGGGGTTGGAGTATCTCTGATAATGACAATTTAGGCAAAAGATAAGATTTAAAG
CTTAACAAATTTAAAAATCAGGTTGGAGTATTC
Found at i:3041455 original size:20 final size:21
Alignment explanation
Indices: 3041415--3041462 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
3041405 TATTTCAAGT
*
3041415 TTGTATTGATACATTCACTTA
1 TTGTATCGATACATTCACTTA
3041436 -TGTATCGATACATT-ACCTTA
1 TTGTATCGATACATTCA-CTTA
3041456 TTGTATC
1 TTGTATC
3041463 AATATAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 1 0.04
20 17 0.71
21 6 0.25
ACGTcount: A:0.27, C:0.17, G:0.10, T:0.46
Consensus pattern (21 bp):
TTGTATCGATACATTCACTTA
Found at i:3044021 original size:32 final size:32
Alignment explanation
Indices: 3043980--3044049 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
3043970 AAAATTTAGA
* *
3043980 ATCTC-AGATAAGTGTAAACTCTATCAACTAT
1 ATCTCTAGATAAATCTAAACTCTATCAACTAT
*
3044011 ATCTCTAGATAAATCTAAACTCTATCAACTTT
1 ATCTCTAGATAAATCTAAACTCTATCAACTAT
*
3044043 ATTTCTA
1 ATCTCTA
3044050 TAGAGTTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 5 0.15
32 29 0.85
ACGTcount: A:0.37, C:0.20, G:0.06, T:0.37
Consensus pattern (32 bp):
ATCTCTAGATAAATCTAAACTCTATCAACTAT
Found at i:3044281 original size:29 final size:29
Alignment explanation
Indices: 3044244--3044301 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
3044234 CCAGTTTGTT
* *
3044244 TATTTAAATAGAATTTTAAATATTTTTAA
1 TATTTAAATAAAATTTAAAATATTTTTAA
3044273 TATTTAAATAAAATTTAAAATATTTTTAA
1 TATTTAAATAAAATTTAAAATATTTTTAA
3044302 AATAATTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (29 bp):
TATTTAAATAAAATTTAAAATATTTTTAA
Found at i:3048764 original size:2 final size:2
Alignment explanation
Indices: 3048757--3048808 Score: 86
Period size: 2 Copynumber: 26.0 Consensus size: 2
3048747 ACTTTATTTG
*
3048757 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
3048799 GT AT AT AT AT
1 AT AT AT AT AT
3048809 TTGATTAATT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3049454 original size:26 final size:25
Alignment explanation
Indices: 3049423--3049495 Score: 76
Period size: 26 Copynumber: 2.9 Consensus size: 25
3049413 TCGAATTTAT
3049423 TTATTATAATTAAAAATAAAAAAATA
1 TTATTATAATTAAAAAT-AAAAAATA
** * *
3049449 TTATTATAATTAATTATTATAAATA
1 TTATTATAATTAAAAATAAAAAATA
*
3049474 TTAATTATAA-TAAAAATCAAAA
1 TT-ATTATAATTAAAAATAAAAA
3049496 TCATTAAATA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
25 16 0.42
26 22 0.58
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (25 bp):
TTATTATAATTAAAAATAAAAAATA
Found at i:3049466 original size:16 final size:16
Alignment explanation
Indices: 3049457--3049487 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
3049447 TATTATTATA
3049457 ATTAATTATTATAAAT
1 ATTAATTATTATAAAT
*
3049473 ATTAATTATAATAAA
1 ATTAATTATTATAAA
3049488 AATCAAAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATTAATTATTATAAAT
Found at i:3050173 original size:29 final size:29
Alignment explanation
Indices: 3050141--3050203 Score: 74
Period size: 30 Copynumber: 2.2 Consensus size: 29
3050131 ATAAATAGAT
* *
3050141 ATAT-CAAAATTTATATAAAATTAATATTA
1 ATATGCAAAAATTATATAAAATTAA-AATA
* *
3050170 ATATGTAAAAATTATATAAATTTAAAATA
1 ATATGCAAAAATTATATAAAATTAAAATA
3050199 ATATG
1 ATATG
3050204 AAATAACATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 12 0.41
30 17 0.59
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.40
Consensus pattern (29 bp):
ATATGCAAAAATTATATAAAATTAAAATA
Found at i:3050202 original size:96 final size:97
Alignment explanation
Indices: 3050102--3050303 Score: 205
Period size: 95 Copynumber: 2.1 Consensus size: 97
3050092 AATATAATAC
* * * *
3050102 AATATAAAAATAATATGAACAAAATATAAATAAATA-G-ATATATCAAAATTTATATAAAATTAA
1 AATATAAAAATAACATGAACAAAATAT--ATAAATACGAATATATAAAAATATATATAAAATAAA
* *
3050165 -TATTAATATGTAAAAATTATATAAATTTAAAAT
64 TTATTAAGATATAAAAATTATATAAATTTAAAAT
* ** * ** *
3050198 AATAT-GAAATAACATTTATATGATATGTAAATACGAATATATAAAAATATATATAAAATAAATT
1 AATATAAAAATAACATGAACAAAATATATAAATACGAATATATAAAAATATATATAAAATAAATT
* * *
3050262 ATTAAGGTATAAAATTTATATAAATTTATAAT
66 ATTAAGATATAAAAATTATATAAATTTAAAAT
*
3050294 AATACAAAAA
1 AATATAAAAA
3050304 AAAGTAAATT
Statistics
Matches: 84, Mismatches: 18, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
93 6 0.07
94 1 0.01
95 37 0.44
96 37 0.44
97 3 0.04
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (97 bp):
AATATAAAAATAACATGAACAAAATATATAAATACGAATATATAAAAATATATATAAAATAAATT
ATTAAGATATAAAAATTATATAAATTTAAAAT
Found at i:3050436 original size:29 final size:29
Alignment explanation
Indices: 3050392--3050448 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
3050382 AATTGTCAAT
3050392 TAAATTCTCATATTTAGTATATTATAAGC
1 TAAATTCTCATATTTAGTATATTATAAGC
* *
3050421 TAAATTCTCATGTTTAGTATGTTATAAG
1 TAAATTCTCATATTTAGTATATTATAAG
3050449 GTGTTTACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.46
Consensus pattern (29 bp):
TAAATTCTCATATTTAGTATATTATAAGC
Found at i:3050693 original size:21 final size:22
Alignment explanation
Indices: 3050647--3050693 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
3050637 AAAGTCATAA
* *
3050647 AAATGTAATTAATTTTAAAATT
1 AAATTTAATTAATATTAAAATT
3050669 -AATTTAATTAATATT-AAATT
1 AAATTTAATTAATATTAAAATT
3050689 AAATT
1 AAATT
3050694 ATATTCTAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
AAATTTAATTAATATTAAAATT
Found at i:3051659 original size:19 final size:19
Alignment explanation
Indices: 3051623--3051701 Score: 53
Period size: 18 Copynumber: 4.3 Consensus size: 19
3051613 CTAAGCAAGG
3051623 TATATAGTATTATATATAT
1 TATATAGTATTATATATAT
*
3051642 TATA-AGTATGTATCTATAAT
1 TATATAGTAT-TATATAT-AT
* *
3051662 CT-TCT-G-AATATATATAT
1 -TATATAGTATTATATATAT
3051679 GTATATA-TATT-TATATAT
1 -TATATAGTATTATATATAT
3051697 TATAT
1 TATAT
3051702 TTTAAATTAT
Statistics
Matches: 46, Mismatches: 7, Indels: 16
0.67 0.10 0.23
Matches are distributed among these distances:
17 8 0.17
18 20 0.43
19 13 0.28
20 4 0.09
21 1 0.02
ACGTcount: A:0.39, C:0.04, G:0.06, T:0.51
Consensus pattern (19 bp):
TATATAGTATTATATATAT
Found at i:3051830 original size:15 final size:16
Alignment explanation
Indices: 3051803--3051833 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
3051793 TAATTCGATA
3051803 ATAAATAAAAAATTAT
1 ATAAATAAAAAATTAT
3051819 ATAAAT-AAAAATTAT
1 ATAAATAAAAAATTAT
3051834 TAGTTTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAAATAAAAAATTAT
Found at i:3052041 original size:19 final size:19
Alignment explanation
Indices: 3051975--3052053 Score: 53
Period size: 18 Copynumber: 4.2 Consensus size: 19
3051965 ATTAAAAATA
*
3051975 ATAAACTTTATAATAATTTGAT
1 ATAAACTTTAT-AT-A-TTAAT
3051997 AT-AA-TTTATAT-TTGAAT
1 ATAAACTTTATATATT-AAT
3052014 -TAAACTTTATATATTAAT
1 ATAAACTTTATATATTAAT
*
3052032 ATAAATTTTA-ATTATT-AT
1 ATAAACTTTATA-TATTAAT
3052050 ATAA
1 ATAA
3052054 TTTATTAATT
Statistics
Matches: 49, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
16 3 0.06
17 4 0.08
18 17 0.35
19 16 0.33
20 5 0.10
21 2 0.04
22 2 0.04
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (19 bp):
ATAAACTTTATATATTAAT
Found at i:3052077 original size:16 final size:18
Alignment explanation
Indices: 3052025--3052077 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
3052015 AAACTTTATA
*
3052025 TATTAATATAAATTTTAAT
1 TATT-ATATAATTTTTAAT
3052044 TATTATATAATTTATTAAT
1 TATTATATAATTT-TTAAT
3052063 T-TTATAT-ATTTTTAA
1 TATTATATAATTTTTAA
3052078 ATATATAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
16 4 0.12
17 4 0.12
18 14 0.44
19 10 0.31
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTATATAATTTTTAAT
Found at i:3052084 original size:16 final size:17
Alignment explanation
Indices: 3052026--3052087 Score: 60
Period size: 18 Copynumber: 3.8 Consensus size: 17
3052016 AACTTTATAT
*
3052026 ATTA-ATATAAATTTTA
1 ATTATATATAATTTTTA
3052042 ATTATTATATAATTTATTA
1 ATTA-TATATAATTT-TTA
*
3052061 ATTTTATAT-ATTTTTA
1 ATTATATATAATTTTTA
3052077 A--ATATATAATT
1 ATTATATATAATT
3052088 ATATATTTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
14 5 0.13
15 3 0.08
16 8 0.21
17 4 0.10
18 13 0.33
19 6 0.15
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTATATATAATTTTTA
Found at i:3052108 original size:23 final size:22
Alignment explanation
Indices: 3052064--3052108 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
3052054 TTTATTAATT
* *
3052064 TTATATATTTTTAAATATATAA
1 TTATATATTTTAAAATAAATAA
3052086 TTATATATTTTAAAAATAAATAA
1 TTATATATTTT-AAAATAAATAA
3052109 AATTAATAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TTATATATTTTAAAATAAATAA
Found at i:3052253 original size:8 final size:9
Alignment explanation
Indices: 3052240--3052271 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
3052230 AACTTGACTC
3052240 TAAAAAAAT
1 TAAAAAAAT
*
3052249 AAAAAAAAT
1 TAAAAAAAT
3052258 TAAAAAAAT
1 TAAAAAAAT
3052267 TAAAA
1 TAAAA
3052272 TTTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
TAAAAAAAT
Found at i:3055362 original size:2 final size:2
Alignment explanation
Indices: 3055355--3055384 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
3055345 TATGTATGTG
3055355 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3055385 ATTTTATGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3059067 original size:2 final size:2
Alignment explanation
Indices: 3059062--3059096 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
3059052 ACCCCCCGCA
*
3059062 AT AT AT AT AG AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3059097 GAGGAGATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:3059547 original size:2 final size:2
Alignment explanation
Indices: 3059542--3059567 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3059532 ATATAGGATA
3059542 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
3059568 TATTTAGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3061075 original size:26 final size:26
Alignment explanation
Indices: 3061045--3061100 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
3061035 AATTTTATAC
3061045 ATTAAAATTT-ATAAATAAATATAATT
1 ATTAAAATTTGATAAA-AAATATAATT
* *
3061071 ATT-AATTTTGATAAAAAATTTAATT
1 ATTAAAATTTGATAAAAAATATAATT
*
3061096 TTTAA
1 ATTAA
3061101 TAAATTATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (26 bp):
ATTAAAATTTGATAAAAAATATAATT
Found at i:3061351 original size:2 final size:2
Alignment explanation
Indices: 3061344--3061369 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3061334 AATATTTTTC
3061344 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
3061370 TTAAAATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3061478 original size:16 final size:17
Alignment explanation
Indices: 3061454--3061519 Score: 54
Period size: 16 Copynumber: 4.2 Consensus size: 17
3061444 GTTTATATGC
3061454 AAATATATATAA-ATTTA
1 AAATATATA-AATATTTA
3061471 AAAT-TATAAATATTT-
1 AAATATATAAATATTTA
* *
3061486 -AATATA-AAAAATTAA
1 AAATATATAAATATTTA
*
3061501 AAATAAATAAAT-TTTA
1 AAATATATAAATATTTA
3061517 AAA
1 AAA
3061520 ATTTTAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
14 9 0.23
15 4 0.10
16 19 0.49
17 7 0.18
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATATAAATATTTA
Found at i:3062184 original size:137 final size:136
Alignment explanation
Indices: 3062035--3062321 Score: 336
Period size: 137 Copynumber: 2.1 Consensus size: 136
3062025 ATATAATAAG
*
3062035 AAAATAATTAATAAAAAACTTAGATTAAAAATAGTTAATGTTAATAA-AAAATATATATCAATTA
1 AAAATCATTAAT-AAAAACTTAGATT-AAAA-A-TTAA--TTAATAATAAAATATATATCAATTA
* * * *
3062099 AGGATAAATT-A-A-T-A-A-GGACTTCAAGATTAATAAGCAAATAATGAATAAAGATTAGCTAG
60 A-GAAAAATTCACATTAACATGG-CTTCAAGATTAATAAGAAAATAATAAATAAAGATTAGCTAA
3062158 TATTTTAATTTAAT
123 TATTTTAATTTAAT
*
3062172 AAAATCATTAATAAAAACTTAGATTAAAAATTAATTAATAATAAAATATATATCAATTAATAAAA
1 AAAATCATTAATAAAAACTTAGATTAAAAATTAATTAATAATAAAATATATATCAATTAAGAAAA
* * * *
3062237 ATTCACATTAATCATGGTTTCAATATTAATAAGAAAATAATAAATAAAGATTAGTTAATGTTTTA
66 ATTCACATTAA-CATGGCTTCAAGATTAATAAGAAAATAATAAATAAAGATTAGCTAATATTTTA
3062302 ATTTAAT
130 ATTTAAT
3062309 AATAATTCATTAA
1 AA-AA-TCATTAA
3062322 GAGAAAATTA
Statistics
Matches: 130, Mismatches: 10, Indels: 18
0.82 0.06 0.11
Matches are distributed among these distances:
131 13 0.10
132 19 0.15
133 5 0.04
134 2 0.02
135 5 0.04
136 13 0.10
137 62 0.48
138 4 0.03
139 7 0.05
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (136 bp):
AAAATCATTAATAAAAACTTAGATTAAAAATTAATTAATAATAAAATATATATCAATTAAGAAAA
ATTCACATTAACATGGCTTCAAGATTAATAAGAAAATAATAAATAAAGATTAGCTAATATTTTAA
TTTAAT
Found at i:3062770 original size:20 final size:20
Alignment explanation
Indices: 3062745--3062808 Score: 74
Period size: 20 Copynumber: 3.2 Consensus size: 20
3062735 TACCCAGATG
3062745 TATCGATACATTTTTCAATA
1 TATCGATACATTTTTCAATA
* * * *
3062765 TATCGATACATGTATGAATG
1 TATCGATACATTTTTCAATA
* *
3062785 TATCGATATATTCTTCAATA
1 TATCGATACATTTTTCAATA
3062805 TATC
1 TATC
3062809 AATATATTAT
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.42
Consensus pattern (20 bp):
TATCGATACATTTTTCAATA
Found at i:3066593 original size:16 final size:19
Alignment explanation
Indices: 3066548--3066612 Score: 56
Period size: 16 Copynumber: 3.7 Consensus size: 19
3066538 ATATATGTTT
3066548 ATATGTAAATATAA-ATTTAA
1 ATAT-TAAATA-AATATTTAA
3066568 A-ATT--ATAAATATTT-A
1 ATATTAAATAAATATTTAA
3066583 ATA-TAAA-AAAT-TTTAA
1 ATATTAAATAAATATTTAA
3066599 ATATTAAATAAATA
1 ATATTAAATAAATA
3066613 AGTGAAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 17
0.69 0.00 0.31
Matches are distributed among these distances:
15 8 0.22
16 16 0.43
17 5 0.14
18 5 0.14
19 2 0.05
20 1 0.03
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (19 bp):
ATATTAAATAAATATTTAA
Found at i:3067416 original size:21 final size:20
Alignment explanation
Indices: 3067371--3067430 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 20
3067361 ATAAAAAATG
*
3067371 AAATTACTTATTTTTATGATC
1 AAATTACTTA-TTTTATTATC
3067392 --ATTACTTATATTTATTATC
1 AAATTACTTAT-TTTATTATC
*
3067411 AAATTATCTAATTTTATTAT
1 AAATTA-CTTATTTTATTAT
3067431 TTATTTAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
18 1 0.03
19 16 0.48
21 12 0.36
22 4 0.12
ACGTcount: A:0.35, C:0.08, G:0.02, T:0.55
Consensus pattern (20 bp):
AAATTACTTATTTTATTATC
Found at i:3068357 original size:2 final size:2
Alignment explanation
Indices: 3068352--3068386 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
3068342 ATATATATAT
3068352 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
3068387 ATAAAAGCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:3070282 original size:21 final size:22
Alignment explanation
Indices: 3070241--3070290 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
3070231 AAGATCTTAC
*
3070241 CATATGTATATTTTTGTTATATT
1 CATAT-TATATTTTTGTTATAAT
*
3070264 CATATTATTTTTTTG-TATAAT
1 CATATTATATTTTTGTTATAAT
3070285 CATATT
1 CATATT
3070291 TAAAGTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 11 0.44
22 9 0.36
23 5 0.20
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (22 bp):
CATATTATATTTTTGTTATAAT
Found at i:3071375 original size:16 final size:16
Alignment explanation
Indices: 3071354--3071386 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
3071344 GTGATAAGTG
*
3071354 ATAAGTTATATTTTTA
1 ATAAGTAATATTTTTA
3071370 ATAAGTAATATTTTTA
1 ATAAGTAATATTTTTA
3071386 A
1 A
3071387 GATATAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (16 bp):
ATAAGTAATATTTTTA
Found at i:3071414 original size:30 final size:30
Alignment explanation
Indices: 3071378--3071445 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
3071368 TAATAAGTAA
**
3071378 TATTTTTAAGATATAACTTA-TTTTAAATTT
1 TATTTTTAAGATATAA-TTAGTCATAAATTT
* *
3071408 TATTTTTATGATATGATTAGTCATAAATTT
1 TATTTTTAAGATATAATTAGTCATAAATTT
3071438 TATTTTTA
1 TATTTTTA
3071446 TAATGTGACT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 3 0.09
30 30 0.91
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.57
Consensus pattern (30 bp):
TATTTTTAAGATATAATTAGTCATAAATTT
Found at i:3071464 original size:30 final size:30
Alignment explanation
Indices: 3071401--3071464 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
3071391 TAACTTATTT
* * *
3071401 TAAATTTTATTTTTATGATATGATTAGTCA
1 TAAATTTTATTTTTATAATATGACTAATCA
* *
3071431 TAAATTTTATTTTTATAATGTGACTAATTA
1 TAAATTTTATTTTTATAATATGACTAATCA
3071461 TAAA
1 TAAA
3071465 CTTAATATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.52
Consensus pattern (30 bp):
TAAATTTTATTTTTATAATATGACTAATCA
Found at i:3071598 original size:16 final size:15
Alignment explanation
Indices: 3071574--3071613 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
3071564 CAAAAACTAG
*
3071574 TTTTCTTTTATTCTCT
1 TTTTATTTT-TTCTCT
*
3071590 TTTTATTTTTTTTCT
1 TTTTATTTTTTCTCT
3071605 TTTTATTTT
1 TTTTATTTT
3071614 CATTTTTAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTATTTTTTCTCT
Found at i:3073593 original size:21 final size:21
Alignment explanation
Indices: 3073569--3073645 Score: 104
Period size: 21 Copynumber: 3.7 Consensus size: 21
3073559 AAAATTTCCA
3073569 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
3073590 AATGTATCGATACATTTGT-G
1 AATGTATCGATACATTTGTAG
* *
3073610 AAATGTATCGATACA-TTCTACA
1 -AATGTATCGATACATTTGTA-G
3073632 AATGTATCGATACA
1 AATGTATCGATACA
3073646 GGGTCCCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
20 4 0.08
21 47 0.92
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:3073705 original size:19 final size:19
Alignment explanation
Indices: 3073681--3073748 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
3073671 AATTCAACGA
3073681 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
3073700 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
3073715 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
3073732 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
3073749 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:3073719 original size:32 final size:32
Alignment explanation
Indices: 3073683--3073745 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
3073673 TTCAACGATT
*
3073683 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
3073715 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
3073746 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:3073720 original size:13 final size:13
Alignment explanation
Indices: 3073702--3073726 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3073692 ACATAAGTTT
3073702 TGTATCGATACAA
1 TGTATCGATACAA
3073715 TGTATCGATACA
1 TGTATCGATACA
3073727 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3073806 original size:13 final size:13
Alignment explanation
Indices: 3073788--3073813 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3073778 CATTTTTCTG
3073788 TGTATCGATACAT
1 TGTATCGATACAT
3073801 TGTATCGATACAT
1 TGTATCGATACAT
3073814 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3073810 original size:33 final size:33
Alignment explanation
Indices: 3073768--3073834 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3073758 GCCAAGGAAA
***
3073768 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
3073801 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
3073834 T
1 T
3073835 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:3076500 original size:52 final size:51
Alignment explanation
Indices: 3076339--3076508 Score: 189
Period size: 52 Copynumber: 3.3 Consensus size: 51
3076329 TTATTTTCGA
* **
3076339 GGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTTCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAATATCAATTTTTCATAATC
* * * * *
3076390 GGGGATACTCCAACCCCGGTTTTAATTT-CAAAACACCAATTTTCCTTTAATC
1 GGGGATACTCCAACCCCGATTTT-ATTTCCAAAATATCAATTTTTC-ATAATC
* * *
3076442 GGGGATACTCCAACACCGATTTTATTTCCAAAAATATCAATTTTTCACAATT
1 GGGGATACTCCAACCCCGATTTTATTTCC-AAAATATCAATTTTTCATAATC
**
3076494 AAGGATACTCCAACC
1 GGGGATACTCCAACC
3076509 TCGTCAATTC
Statistics
Matches: 96, Mismatches: 19, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
51 37 0.39
52 46 0.48
53 13 0.14
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAATATCAATTTTTCATAATC
Found at i:3076582 original size:211 final size:211
Alignment explanation
Indices: 3076174--3076582 Score: 554
Period size: 211 Copynumber: 1.9 Consensus size: 211
3076164 AGTTCTCCAC
* * * *
3076174 AATCGGCGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGATACTC
1 AATCGGCGATACTCCAACCCCGATTTTAATTTCAAAACACCAATTTTCTATAATCGGGGATACTC
* * ** *
3076239 CAACTCCGATTTTATTTCCAAAAAAACACCAATTTCTTCACGATCGGGGACACTCCAACCACGTT
66 CAACACCGATTTTATTTCC-AAAAAACACCAATTTCTTCACAATCAAGGACACTCCAACCACGTC
* * * * *
3076304 AATCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTTCCA
130 AATCATCAGGGATACTCCAACCCCGTTACTTCCGAGGGAATACTCCAACCCCGACTTTATCTCCA
3076369 AAATATTGATTTTTCAT
195 AAATATTGATTTTTCAT
* * *
3076386 AATCGGGGATACTCCAACCCCGGTTTTAATTTCAAAACACCAATTTTCCTTTAATCGGGGATACT
1 AATCGGCGATACTCCAACCCCGATTTTAATTTCAAAACACCAATTTT-CTATAATCGGGGATACT
* * * * *
3076451 CCAACACCGATTTTATTTCC-AAAAATATCAATTT-TTCACAATTAAGGATACTCCAACCTCGTC
65 CCAACACCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCAAGGACACTCCAACCACGTC
*
3076514 AATTCATCAGGGATACTCCAACCCCGTTACTTCCGAGGGAATACTCCAACCCCG-TTATTATCTC
130 AA-TCATCAGGGATACTCCAACCCCGTTACTTCCGAGGGAATACTCCAACCCCGACT-TTATCTC
3076578 CAAAA
193 CAAAA
3076583 CATTAAACTT
Statistics
Matches: 171, Mismatches: 23, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
210 25 0.15
211 70 0.41
212 41 0.24
213 35 0.20
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.30
Consensus pattern (211 bp):
AATCGGCGATACTCCAACCCCGATTTTAATTTCAAAACACCAATTTTCTATAATCGGGGATACTC
CAACACCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCAAGGACACTCCAACCACGTCA
ATCATCAGGGATACTCCAACCCCGTTACTTCCGAGGGAATACTCCAACCCCGACTTTATCTCCAA
AATATTGATTTTTCAT
Found at i:3080259 original size:27 final size:25
Alignment explanation
Indices: 3080205--3080286 Score: 62
Period size: 25 Copynumber: 3.2 Consensus size: 25
3080195 CAAAAGCTAG
*
3080205 TTTTCTTTCATTCTCTCTTTAGTTT
1 TTTTCTTTCATTCTCTCTTTAGTCT
*
3080230 TTTTCCTTTCCATTTTCATCTTTAG-CT
1 TTTT-CTTT-CATTCTC-TCTTTAGTCT
* *
3080257 TTTTTTCTTCGTT-TCATCTTTAGT-T
1 TTTTCT-TTCATTCTC-TCTTTAGTCT
3080282 TTTTC
1 TTTTC
3080287 CCTACAAATC
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
25 19 0.40
26 8 0.17
27 13 0.28
28 7 0.15
ACGTcount: A:0.09, C:0.21, G:0.05, T:0.66
Consensus pattern (25 bp):
TTTTCTTTCATTCTCTCTTTAGTCT
Found at i:3083366 original size:63 final size:63
Alignment explanation
Indices: 3083250--3083371 Score: 140
Period size: 63 Copynumber: 1.9 Consensus size: 63
3083240 TGCAATGCAT
* * * * *
3083250 TCGTTTATATGCCCAAAGATCTTTCTTTTTTTAAAGAAATGCTTGAGAGAATGTGTAGCATAC
1 TCGTTTATATGCCCAAAAATCTTTCTTTTCTTAAAGAAATGCCTAAGAGAATGTATAGCATAC
* * *
3083313 TCGTTTATATGCTCAAAAATCTTT-TATTTCTTAAATATATGCCTAATGA-AATGTATAGC
1 TCGTTTATATGCCCAAAAATCTTTCT-TTTCTTAAAGAAATGCCTAA-GAGAATGTATAGC
3083372 GTATTTACTT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
62 1 0.02
63 46 0.94
64 2 0.04
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (63 bp):
TCGTTTATATGCCCAAAAATCTTTCTTTTCTTAAAGAAATGCCTAAGAGAATGTATAGCATAC
Found at i:3093696 original size:14 final size:15
Alignment explanation
Indices: 3093667--3093714 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 15
3093657 AAATTTATTC
3093667 ATAAATAATAAACAA
1 ATAAATAATAAACAA
*
3093682 ATAAAT-ATAATCAA
1 ATAAATAATAAACAA
* *
3093696 ACAAACAAATAAACAA
1 ATAAA-TAATAAACAA
3093712 ATA
1 ATA
3093715 TTCAAATATT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
14 11 0.42
15 6 0.23
16 9 0.35
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.19
Consensus pattern (15 bp):
ATAAATAATAAACAA
Found at i:3093699 original size:18 final size:17
Alignment explanation
Indices: 3093671--3093706 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
3093661 TTATTCATAA
*
3093671 ATAATAAACAAATAAAT
1 ATAATAAACAAACAAAT
3093688 ATAATCAAACAAACAAAT
1 ATAAT-AAACAAACAAAT
3093706 A
1 A
3093707 AACAAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.69, C:0.11, G:0.00, T:0.19
Consensus pattern (17 bp):
ATAATAAACAAACAAAT
Found at i:3093846 original size:41 final size:40
Alignment explanation
Indices: 3093759--3093852 Score: 102
Period size: 41 Copynumber: 2.3 Consensus size: 40
3093749 TTAGGTTATT
* * *
3093759 ATTAAAT-ATAAAAATAAAATATAAATATTATTAATTATA
1 ATTAAATAATAAAAATAAAATATAAATAATAATAACTATA
* *
3093798 TTATAAATAATTAAAATAAAATATAAATAATAAT-ACTACTAA
1 AT-TAAATAATAAAAATAAAATATAAATAATAATAACTA-T-A
3093840 ATTAAATAATAAA
1 ATTAAATAATAAA
3093853 CTAATTTTAA
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
39 1 0.02
40 8 0.18
41 33 0.75
42 2 0.05
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (40 bp):
ATTAAATAATAAAAATAAAATATAAATAATAATAACTATA
Found at i:3093847 original size:21 final size:21
Alignment explanation
Indices: 3093799--3093855 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
3093789 TTAATTATAT
*
3093799 TATAAATAATTAAAATA--AAA
1 TATAAATAA-TAAACTACTAAA
3093819 TATAAATAATAATACTACTAAA
1 TATAAATAATAA-ACTACTAAA
3093841 T-TAAATAATAAACTA
1 TATAAATAATAAACTA
3093856 ATTTTAAATG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
19 3 0.09
20 16 0.48
21 10 0.30
22 4 0.12
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (21 bp):
TATAAATAATAAACTACTAAA
Found at i:3095422 original size:18 final size:17
Alignment explanation
Indices: 3095401--3095443 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
3095391 AATTTTATTT
3095401 TATTATAAAAAATTTACA
1 TATTATAAAAAATTTA-A
*
3095419 TATTATTAATAAATTTAA
1 TATTA-TAAAAAATTTAA
3095437 TATTATA
1 TATTATA
3095444 TAATATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 2 0.09
18 11 0.48
19 10 0.43
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (17 bp):
TATTATAAAAAATTTAA
Found at i:3095432 original size:19 final size:18
Alignment explanation
Indices: 3095401--3095448 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
3095391 AATTTTATTT
*
3095401 TATTA-TAAAAAATTTACA
1 TATTATTAATAAATTTA-A
3095419 TATTATTAATAAATTTAA
1 TATTATTAATAAATTTAA
3095437 TATTATATAATA
1 TATTAT-TAATA
3095449 TTTTTATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 12 0.44
19 15 0.56
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (18 bp):
TATTATTAATAAATTTAA
Found at i:3095457 original size:18 final size:18
Alignment explanation
Indices: 3095413--3095468 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
3095403 TTATAAAAAA
*
3095413 TTTACATATTAT-TAATAAA
1 TTTA-ATATTATATAAT-AT
3095432 TTTAATATTATATAATAT
1 TTTAATATTATATAATAT
* *
3095450 TTTTATATTA-AAAATAT
1 TTTAATATTATATAATAT
3095467 TT
1 TT
3095469 ATAAATCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 8 0.24
18 17 0.52
19 8 0.24
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTAATATTATATAATAT
Found at i:3095712 original size:19 final size:19
Alignment explanation
Indices: 3095678--3095729 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
3095668 GAATAAATAT
*
3095678 AAAATATAAA-ATTTTAAA
1 AAAATAAAAATATTTTAAA
* *
3095696 TATATAAAAATATTTTAAA
1 AAAATAAAAATATTTTAAA
*
3095715 AAAATAAATATATTT
1 AAAATAAAAATATTT
3095730 ATATTAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
18 7 0.26
19 20 0.74
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAATAAAAATATTTTAAA
Found at i:3095738 original size:19 final size:19
Alignment explanation
Indices: 3095716--3095752 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
3095706 TATTTTAAAA
*
3095716 AAATAAATATATTTATATT
1 AAATAAATATATATATATT
*
3095735 AAATATATATATATATAT
1 AAATAAATATATATATAT
3095753 ATGATATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
AAATAAATATATATATATT
Found at i:3095739 original size:15 final size:16
Alignment explanation
Indices: 3095718--3095762 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
3095708 TTTTAAAAAA
3095718 ATAAATATATTTATAT
1 ATAAATATATTTATAT
*
3095734 -TAAATATATATATAT
1 ATAAATATATTTATAT
*
3095749 ATATATGATATTTA
1 ATAAAT-ATATTTA
3095763 ATTGAATCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 14 0.58
16 4 0.17
17 6 0.25
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (16 bp):
ATAAATATATTTATAT
Found at i:3097392 original size:17 final size:18
Alignment explanation
Indices: 3097352--3097393 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
3097342 AATATTTTTC
3097352 AAAAA-ATTATAACAAAT
1 AAAAATATTATAACAAAT
*
3097369 AACAAATATT-TAACATAT
1 AA-AAATATTATAACAAAT
3097387 AAAAATA
1 AAAAATA
3097394 ACGTAAACAC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 7 0.32
18 12 0.55
19 3 0.14
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (18 bp):
AAAAATATTATAACAAAT
Found at i:3098823 original size:29 final size:29
Alignment explanation
Indices: 3098748--3098835 Score: 106
Period size: 29 Copynumber: 3.1 Consensus size: 29
3098738 TTTTTATTTG
* *
3098748 TAGAATACTTATTTCATAAAATAATTAAT
1 TAGAATACTTATTTTATAAAATAATTAAA
** * **
3098777 TTTAA-ATTTATTTTATAAAATTTTTAAA
1 TAGAATACTTATTTTATAAAATAATTAAA
3098805 TAGAATACTTATTTTATAAAATAATTAAA
1 TAGAATACTTATTTTATAAAATAATTAAA
3098834 TA
1 TA
3098836 CTTCATTTAC
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
28 21 0.46
29 25 0.54
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (29 bp):
TAGAATACTTATTTTATAAAATAATTAAA
Found at i:3098969 original size:11 final size:11
Alignment explanation
Indices: 3098941--3099005 Score: 60
Period size: 11 Copynumber: 6.0 Consensus size: 11
3098931 TATTAATATA
*
3098941 ATTATTTTACT
1 ATTATTTTATT
3098952 A-TATTTTATT
1 ATTATTTTATT
*
3098962 TTTATTTTATT
1 ATTATTTTATT
*** *
3098973 ATTATAAAATA
1 ATTATTTTATT
3098984 ATTATTTTATT
1 ATTATTTTATT
*
3098995 ATAATTTTATT
1 ATTATTTTATT
3099006 CAATTTTAAT
Statistics
Matches: 41, Mismatches: 12, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
10 8 0.20
11 33 0.80
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (11 bp):
ATTATTTTATT
Found at i:3099383 original size:24 final size:23
Alignment explanation
Indices: 3099316--3099432 Score: 70
Period size: 22 Copynumber: 5.2 Consensus size: 23
3099306 TTTGACACAC
*
3099316 TAAATT-TAATATTA-ATTTTAT
1 TAAATTATATTATTATATTTTAT
*
3099337 ATAAATTATAAATT-TTTTATTTTAT
1 -TAAATTAT--ATTATTATATTTTAT
3099362 TAAATTATATTATTATATTTTTAT
1 TAAATTATATTATTATA-TTTTAT
* * *
3099386 T--ATTA-ATAAATTAAATTATAT
1 TAAATTATAT-TATTATATTTTAT
*
3099407 TAAATT-TATTA-TATAATTTTTT
1 TAAATTATATTATTAT-ATTTTAT
3099429 TAAA
1 TAAA
3099433 ATAATTTAAT
Statistics
Matches: 74, Mismatches: 10, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
21 10 0.14
22 28 0.38
23 10 0.14
24 17 0.23
25 9 0.12
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
TAAATTATATTATTATATTTTAT
Found at i:3100362 original size:24 final size:22
Alignment explanation
Indices: 3100309--3100375 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
3100299 TTATTATTGA
*
3100309 AATATTTTATATAAAAATTATT
1 AATATTTAATATAAAAATTATT
*
3100331 AAGT-TTTAATGATAAAAATTTGTT
1 AA-TATTTAAT-ATAAAAA-TTATT
*
3100355 AATATTTAA-ATAACAATTATT
1 AATATTTAATATAAAAATTATT
3100376 TAAATTATGA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
21 4 0.11
22 13 0.35
23 9 0.24
24 11 0.30
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.46
Consensus pattern (22 bp):
AATATTTAATATAAAAATTATT
Found at i:3100470 original size:14 final size:15
Alignment explanation
Indices: 3100389--3100486 Score: 56
Period size: 16 Copynumber: 6.0 Consensus size: 15
3100379 ATTATGATAA
* *
3100389 TATTATTAATTTTAT
1 TATTATAAATATTAT
*
3100404 TATTA-AAAGTAGTAT
1 TATTATAAA-TATTAT
*
3100419 T-TATATTAAATATTAA
1 TAT-TA-TAAATATTAT
3100435 TATTAATAAATATTTTTAT
1 TATT-ATAAATA---TTAT
3100454 TATTATTAAAATATTAT
1 TATTA-T-AAATATTAT
3100471 TATTATAAATAATTAT
1 TATTATAAAT-ATTAT
3100487 ATTTATAAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 23
0.69 0.06 0.24
Matches are distributed among these distances:
14 3 0.05
15 16 0.25
16 18 0.28
17 14 0.22
18 1 0.02
19 8 0.12
20 5 0.08
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
TATTATAAATATTAT
Found at i:3100879 original size:16 final size:15
Alignment explanation
Indices: 3100853--3100882 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
3100843 TTAAAATTAA
3100853 TAAAAAATTAATAAT
1 TAAAAAATTAATAAT
3100868 TAAAAAAGTTAATAA
1 TAAAAAA-TTAATAA
3100883 AATATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (15 bp):
TAAAAAATTAATAAT
Found at i:3101008 original size:32 final size:33
Alignment explanation
Indices: 3100962--3101025 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
3100952 CAAATATAAA
* *
3100962 TAAATTTATATAAAATTTGAAA-ATCTCATATTT
1 TAAATTTAAATAAAATTT-AAATATATCATATTT
3100995 TAAA-TTAAATAAAATTTAAATATATCATATT
1 TAAATTTAAATAAAATTTAAATATATCATATT
3101026 ATATATATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 3 0.11
32 21 0.75
33 4 0.14
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.44
Consensus pattern (33 bp):
TAAATTTAAATAAAATTTAAATATATCATATTT
Found at i:3101188 original size:17 final size:16
Alignment explanation
Indices: 3101166--3101208 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 16
3101156 ATTATACTTT
3101166 AAAATTATAATAAATAA
1 AAAATTATAAT-AATAA
*
3101183 AAAATTAATAATATTAA
1 AAAATT-ATAATAATAA
3101200 AAATATTAT
1 AAA-ATTAT
3101209 TTAAATATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAAATTATAATAATAA
Done.