Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold193
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3104049
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.32
Warning! 172765 characters in sequence are not A, C, G, or T
File 5 of 18
Found at i:692325 original size:16 final size:16
Alignment explanation
Indices: 692306--692345 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
692296 TGTCTGTTCA
692306 AATTTAAATCTAAAAT
1 AATTTAAATCTAAAAT
*
692322 AATTTAAAACTAAAAT
1 AATTTAAATCTAAAAT
692338 -ATTTAAAT
1 AATTTAAAT
692346 TTTAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (16 bp):
AATTTAAATCTAAAAT
Found at i:699843 original size:3 final size:3
Alignment explanation
Indices: 699835--699866 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
699825 AATATGGTTA
699835 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
699867 GCAAGCACCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:705453 original size:6 final size:6
Alignment explanation
Indices: 705437--705468 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
705427 TTTTTTGTTA
705437 TTTTC- TTTTCT TTTTCT TTTTCT TTTT-T TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
705469 GAATTTCTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.38
6 16 0.62
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (6 bp):
TTTTCT
Found at i:705457 original size:17 final size:16
Alignment explanation
Indices: 705437--705522 Score: 66
Period size: 17 Copynumber: 5.0 Consensus size: 16
705427 TTTTTTGTTA
705437 TTTTCTTTTCTTTTTCT
1 TTTTCTTTT-TTTTTCT
705454 TTTTCTTTTTTTTT-T
1 TTTTCTTTTTTTTTCT
* *
705469 GAATTTCTTTATATTTTCT
1 --TTTTCTTT-TTTTTTCT
* *
705488 CTTTCTTTTATTTTCCTT
1 TTTTCTTTT-TTTTTC-T
705506 TATTTCTTTTTTTTTCT
1 T-TTTCTTTTTTTTTCT
705523 ATAAACTTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
15 1 0.02
16 6 0.11
17 28 0.51
18 11 0.20
19 9 0.16
ACGTcount: A:0.07, C:0.14, G:0.01, T:0.78
Consensus pattern (16 bp):
TTTTCTTTTTTTTTCT
Found at i:705468 original size:11 final size:11
Alignment explanation
Indices: 705426--705468 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 11
705416 CGCATTTTTA
*
705426 TTTTTTTGTTAT
1 TTTTTTTCTT-T
705438 TTTCTTTTCTTT
1 TTT-TTTTCTTT
705450 TTCTTTTTCTTT
1 TT-TTTTTCTTT
705462 TTTTTTT
1 TTTTTTT
705469 GAATTTCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 5 0.18
12 16 0.57
13 7 0.25
ACGTcount: A:0.02, C:0.09, G:0.02, T:0.86
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:708945 original size:90 final size:90
Alignment explanation
Indices: 708785--708968 Score: 305
Period size: 90 Copynumber: 2.0 Consensus size: 90
708775 GCCCGGCGAT
* * *
708785 TCTCTCCAAATTCTCACTATAATTACAGCACTCTAGACTTTCATTCAAGAACACATTCCACATTA
1 TCTCCCCAAATTCTCACTATAAATACAGCACTCTAGACTTCCATTCAAGAACACATTCCACATTA
*
708850 ATGAAATTGAAAGCTTCAAAAATTC
66 ATGAAATTGAAAGCTTCAAAAACTC
*
708875 TCTCCCCAAATTCTCACTATAAATACAGCACTCTAGACTTCCATTCAAGAACACATTCCACATTG
1 TCTCCCCAAATTCTCACTATAAATACAGCACTCTAGACTTCCATTCAAGAACACATTCCACATTA
* *
708940 CTGAAATTGAGAGCTTCAAAAACTC
66 ATGAAATTGAAAGCTTCAAAAACTC
708965 TCTC
1 TCTC
708969 TCCTTCTAGC
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
90 87 1.00
ACGTcount: A:0.36, C:0.27, G:0.08, T:0.29
Consensus pattern (90 bp):
TCTCCCCAAATTCTCACTATAAATACAGCACTCTAGACTTCCATTCAAGAACACATTCCACATTA
ATGAAATTGAAAGCTTCAAAAACTC
Found at i:710284 original size:15 final size:14
Alignment explanation
Indices: 710252--710352 Score: 55
Period size: 14 Copynumber: 7.1 Consensus size: 14
710242 ATTTAAAATC
* *
710252 AAAAAGTCTAATTG
1 AAAAAGTTTAATTA
710266 AAAAAGTTTAATGTA
1 AAAAAGTTTAAT-TA
* *
710281 AAAAGGTTTAATTG
1 AAAAAGTTTAATTA
* *
710295 ATAAA-TCTTTA-TA
1 AAAAAGT-TTAATTA
*
710308 TAAAAAGTTCAATTA
1 -AAAAAGTTTAATTA
** *
710323 AAAATTTTATAAAT-
1 AAAAAGTT-TAATTA
710337 AAAAAGTTTAATTA
1 AAAAAGTTTAATTA
710351 AA
1 AA
710353 TATATATATA
Statistics
Matches: 62, Mismatches: 18, Indels: 14
0.66 0.19 0.15
Matches are distributed among these distances:
13 6 0.10
14 38 0.61
15 18 0.29
ACGTcount: A:0.52, C:0.03, G:0.09, T:0.36
Consensus pattern (14 bp):
AAAAAGTTTAATTA
Found at i:710312 original size:28 final size:27
Alignment explanation
Indices: 710243--710397 Score: 108
Period size: 28 Copynumber: 5.7 Consensus size: 27
710233 AGGAGTCCTA
* * *
710243 TTTAAAATCAAAAAGTCTAATTGAAAAAG
1 TTTATAAT-AAAAAGTTTAATT-AAAAAT
* *
710272 TTTA-ATGTAAAAAGGTTTAATTGATAAAT
1 TTTATA-ATAAAAA-GTTTAATT-AAAAAT
*
710301 CTTTAT-ATAAAAAGTTCAATTAAAAAT
1 -TTTATAATAAAAAGTTTAATTAAAAAT
710328 TTTATAAATAAAAAGTTTAATT--AAA-
1 TTTAT-AATAAAAAGTTTAATTAAAAAT
* *
710353 TATAT-ATATAAAGTTTAATTAAAAAT
1 TTTATAATAAAAAGTTTAATTAAAAAT
*
710379 TTTATATGTAAAAA-TTTAA
1 TTTATA-ATAAAAAGTTTAA
710398 CAAAAATCCT
Statistics
Matches: 102, Mismatches: 13, Indels: 24
0.73 0.09 0.17
Matches are distributed among these distances:
23 14 0.14
25 7 0.07
26 12 0.12
27 10 0.10
28 32 0.31
29 23 0.23
30 4 0.04
ACGTcount: A:0.52, C:0.03, G:0.07, T:0.39
Consensus pattern (27 bp):
TTTATAATAAAAAGTTTAATTAAAAAT
Found at i:710365 original size:23 final size:23
Alignment explanation
Indices: 710330--710375 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
710320 TTAAAAATTT
710330 TATAAATAAAAAGTTTAATTAAA
1 TATAAATAAAAAGTTTAATTAAA
* *
710353 TATATATATAAAGTTTAATTAAA
1 TATAAATAAAAAGTTTAATTAAA
710376 AATTTTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (23 bp):
TATAAATAAAAAGTTTAATTAAA
Found at i:710718 original size:28 final size:27
Alignment explanation
Indices: 710661--710719 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
710651 GAAAATCTTT
710661 AAAATTTAATTAAAAATCCTATTAGGAA
1 AAAATTTAATTAAAAATCCTATTA-GAA
* * *
710689 AAAGTTTGATTAAACATTCCTATTA-AA
1 AAAATTTAATTAAA-AATCCTATTAGAA
710716 AAAA
1 AAAA
710720 CCCAATCAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
27 5 0.19
28 12 0.46
29 9 0.35
ACGTcount: A:0.53, C:0.08, G:0.07, T:0.32
Consensus pattern (27 bp):
AAAATTTAATTAAAAATCCTATTAGAA
Found at i:711434 original size:39 final size:39
Alignment explanation
Indices: 711379--711461 Score: 123
Period size: 39 Copynumber: 2.2 Consensus size: 39
711369 TTGAATCTCA
* *
711379 TTTT-TCTCAGTTTTTATCATGTGTAATCAAATCTTCTT
1 TTTTATCTCAGTTTTTATCATGTGTAATCAAATCTCCCT
* *
711417 TTTTATCTCAGTTTTTATCATGTGTATTCAAGTCTCCCT
1 TTTTATCTCAGTTTTTATCATGTGTAATCAAATCTCCCT
711456 TTTTAT
1 TTTTAT
711462 TCATCAAAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
38 4 0.10
39 36 0.90
ACGTcount: A:0.19, C:0.17, G:0.08, T:0.55
Consensus pattern (39 bp):
TTTTATCTCAGTTTTTATCATGTGTAATCAAATCTCCCT
Found at i:715096 original size:20 final size:19
Alignment explanation
Indices: 715068--715141 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
715058 TTTACCTAGA
*
715068 TGTAGCGATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
*
715088 TGTATCGATACATTGCTCAT
1 TGTATCGATACATT-TTCAT
* *
715108 TCTATCGATACATTTTACAA
1 TGTATCGATACATTTT-CAT
715128 TGTATCGATACATT
1 TGTATCGATACATT
715142 CAAGCATTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
19 1 0.02
20 44 0.96
21 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:717535 original size:51 final size:51
Alignment explanation
Indices: 717443--717608 Score: 140
Period size: 51 Copynumber: 3.3 Consensus size: 51
717433 TTTCATCTCG
* * * * * *
717443 GGGATACTTCAA-TCCCGGTTTCATTTCCAAAACATCAATTTTTCTTAATCA
1 GGGATACTTCAACT-CCGATTTTATTTCTAAAACACCAATTTTCCATAATCA
* * **
717494 TGGATACTTCAACTCCGATTTTATTTCTAAAACACCCATTTTCCATAATTG
1 GGGATACTTCAACTCCGATTTTATTTCTAAAACACCAATTTTCCATAATCA
* * * * *
717545 GGGATACTCCAACTCTGATTTTATTT-TCAAAACACCGACTTTT-CACAATCG
1 GGGATACTTCAACTCCGATTTTATTTCT-AAAACACC-AATTTTCCATAATCA
*
717596 GGGATACTCCAAC
1 GGGATACTTCAAC
717609 CCCTTTATTT
Statistics
Matches: 95, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
50 1 0.01
51 89 0.94
52 5 0.05
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.35
Consensus pattern (51 bp):
GGGATACTTCAACTCCGATTTTATTTCTAAAACACCAATTTTCCATAATCA
Found at i:717743 original size:76 final size:76
Alignment explanation
Indices: 717544--717736 Score: 235
Period size: 76 Copynumber: 2.5 Consensus size: 76
717534 TTCCATAATT
* * *
717544 GGGGATACTCCAACTCTGATTTTATTTTCAAAACACCGACTTTTCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAACTC-GATTTTATTTTTAAAACATCAACTTTT--CAATCGGGGATACTCCAAC
*
717609 CCCTTTATTTCCAA
63 CCCGTTATTTCCAA
* * * * *
717623 GGGGACACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTC-ATCGGGGATACTCCAACCC
1 GGGGATACTCCAA-CTCGATTTTATTTTTAAAACATCAACTTTTCAATCGGGGATACTCCAACCC
717687 CGTTATTTCCAA
65 CGTTATTTCCAA
*
717699 GGGGATACTCCAATCTCGATTTTATTTTTTGAAACATC
1 GGGGATACTCCAA-CTCGATTTTA-TTTTTAAAACATC
717737 TATTTTCTAT
Statistics
Matches: 97, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
76 50 0.52
77 12 0.12
79 33 0.34
80 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (76 bp):
GGGGATACTCCAACTCGATTTTATTTTTAAAACATCAACTTTTCAATCGGGGATACTCCAACCCC
GTTATTTCCAA
Found at i:719284 original size:18 final size:18
Alignment explanation
Indices: 719261--719296 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
719251 TTAATGTAAG
719261 AACACCAATCTCATAGGT
1 AACACCAATCTCATAGGT
719279 AACACCAATCTCATAGGT
1 AACACCAATCTCATAGGT
719297 CCTCTACCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.28, G:0.11, T:0.22
Consensus pattern (18 bp):
AACACCAATCTCATAGGT
Found at i:719601 original size:112 final size:113
Alignment explanation
Indices: 719443--719820 Score: 352
Period size: 112 Copynumber: 3.4 Consensus size: 113
719433 GCATACTGAT
* *
719443 ATGCCTACTTCA-CTGATCTTCCACATAATC-AAGTGAAG-AGGGCTTAACAAAAAAATAAATTG
1 ATGCCTACTTCATC-GATCTTCCACATAACCGAA-TGAAGAAGGACTTAACAAAAAAATAAATTG
* * *
719505 CCAACTTTATCGGTTTTTCATCTAACCAATTAGAATAAACTTAACATAGA
64 CCAACTTTATCGGTTTTTCAACTAACCAATTAGAATAGACTTAACAAAGA
* * * *
719555 ATGCCTACTTCATCGATCTTTCACATAACTGAATGAAGAA-GACTTAACAAAAAAATGAGTTGCC
1 ATGCCTACTTCATCGATCTTCCACATAACCGAATGAAGAAGGACTTAACAAAAAAATAAATTGCC
* *** * * * *
719619 AACTCTA-CCAATCTTCAACGTAACCTATTAGAGTAGACGTAACAAAGA
66 AACTTTATCGGTTTTTCAAC-TAACCAATTAGAATAGACTTAACAAAGA
* * * * *
719667 A-----ACTTCACCGATCTTCCACATAACCGAATGAA-AAGGACTTGACAACAAACTAAACTGCC
1 ATGCCTACTTCATCGATCTTCCACATAACCGAATGAAGAAGGACTTAACAAAAAAATAAATTGCC
* * * * * *
719726 AACTTTAAT-GGTCTTCCACCTAACCAATTAGAATGGACTTAACACATA
66 AACTTT-ATCGGTTTTTCAACTAACCAATTAGAATAGACTTAACAAAGA
*
719774 ATGCCTA-TGTCATCGATCTTCCACATAACCGAAT-AAAAAGGACTTAA
1 ATGCCTACT-TCATCGATCTTCCACATAACCGAATGAAGAAGGACTTAA
719821 TACTAAACAC
Statistics
Matches: 210, Mismatches: 42, Indels: 28
0.75 0.15 0.10
Matches are distributed among these distances:
106 2 0.01
107 74 0.35
108 5 0.02
111 10 0.05
112 115 0.55
113 4 0.02
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.26
Consensus pattern (113 bp):
ATGCCTACTTCATCGATCTTCCACATAACCGAATGAAGAAGGACTTAACAAAAAAATAAATTGCC
AACTTTATCGGTTTTTCAACTAACCAATTAGAATAGACTTAACAAAGA
Found at i:719817 original size:53 final size:57
Alignment explanation
Indices: 719675--719820 Score: 133
Period size: 53 Copynumber: 2.6 Consensus size: 57
719665 GAAACTTCAC
* *
719675 CGATCTTCCACATAACCGAATGAAAAGGACTTGACAACAAACTAAACTGCCAACTTTAAT
1 CGATCTTCCACATAACCGAATAAAAAGGACTT---AACAAACTAAACTGCCAACTGTAAT
* * * * * * *
719735 -GGTCTTCCACCTAACC-AATTAGAATGGACTTAACACA-T-AA-TGCCTA-TGTCAT
1 CGATCTTCCACATAACCGAA-TAAAAAGGACTTAACAAACTAAACTGCCAACTGTAAT
719787 CGATCTTCCACATAACCGAATAAAAAGGACTTAA
1 CGATCTTCCACATAACCGAATAAAAAGGACTTAA
719821 TACTAAACAC
Statistics
Matches: 70, Mismatches: 13, Indels: 13
0.73 0.14 0.14
Matches are distributed among these distances:
52 4 0.06
53 31 0.44
54 4 0.06
55 1 0.01
56 5 0.07
58 2 0.03
59 23 0.33
ACGTcount: A:0.39, C:0.25, G:0.12, T:0.24
Consensus pattern (57 bp):
CGATCTTCCACATAACCGAATAAAAAGGACTTAACAAACTAAACTGCCAACTGTAAT
Found at i:721247 original size:20 final size:21
Alignment explanation
Indices: 721203--721248 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
721193 ATTGAACACC
721203 ATTGAATTTTTTTATAAACTT
1 ATTGAATTTTTTTATAAACTT
* *
721224 -TTGATTTTTTTTTTAAA-TT
1 ATTGAATTTTTTTATAAACTT
721243 ATTGAA
1 ATTGAA
721249 AATAATTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (21 bp):
ATTGAATTTTTTTATAAACTT
Found at i:722763 original size:16 final size:16
Alignment explanation
Indices: 722744--722795 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
722734 GAAATGATTC
722744 GAACCTGAAATAACCT
1 GAACCTGAAATAACCT
** *
722760 GAACCCAAAACAA-CT
1 GAACCTGAAATAACCT
722775 CGAACCTGAAAATAACCT
1 -GAACCTG-AAATAACCT
722793 GAA
1 GAA
722796 AATTTTAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 5
0.71 0.16 0.13
Matches are distributed among these distances:
15 2 0.07
16 15 0.56
17 8 0.30
18 2 0.07
ACGTcount: A:0.48, C:0.27, G:0.12, T:0.13
Consensus pattern (16 bp):
GAACCTGAAATAACCT
Found at i:725112 original size:18 final size:19
Alignment explanation
Indices: 725089--725126 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
725079 TATATTAAAT
*
725089 AATATTTAA-AAAAAATAA
1 AATATTCAAGAAAAAATAA
*
725107 AATATTCAAGATAAAATAA
1 AATATTCAAGAAAAAATAA
725126 A
1 A
725127 TAGTACTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (19 bp):
AATATTCAAGAAAAAATAA
Found at i:725434 original size:57 final size:57
Alignment explanation
Indices: 725318--725466 Score: 171
Period size: 57 Copynumber: 2.6 Consensus size: 57
725308 ATAAGAAATA
* *
725318 AAAT-TATAATTTATTATATATAAATTTTAAAGTTTAAATATATTAAATTAAAAATAATT
1 AAATATATAATTTATTATA-AT-AATTTTAAAATTAAAATATATTAAATT-AAAATAATT
*
725377 AAATATATAATTTATTATAATCATTTTAAAATTAAAATA-ATTCAAATCT-AAATAATT
1 AAATATATAATTTATTATAATAATTTTAAAATTAAAATATATT-AAAT-TAAAATAATT
* * *
725434 AAATATATACTTTATGATAATTA-TTTAAAATTA
1 AAATATATAATTTATTATAATAATTTTAAAATTA
725467 TAGTTATCAA
Statistics
Matches: 81, Mismatches: 6, Indels: 9
0.84 0.06 0.09
Matches are distributed among these distances:
56 10 0.12
57 31 0.38
58 19 0.23
59 7 0.09
60 14 0.17
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (57 bp):
AAATATATAATTTATTATAATAATTTTAAAATTAAAATATATTAAATTAAAATAATT
Found at i:725480 original size:50 final size:53
Alignment explanation
Indices: 725368--725480 Score: 124
Period size: 57 Copynumber: 2.1 Consensus size: 53
725358 TATTAAATTA
*
725368 AAAATAATTAAATATATAATTTATTATAATCATTTTAAAATTAAAATAATTCAAATC
1 AAAATAATTAAATATATAATTTATGATAATCATTTTAAAATT--AATAATT--AATC
* * * *
725425 TAAATAATTAAATATATACTTTATGATAATTA-TTTAAAATT-ATAGTT-ATC
1 AAAATAATTAAATATATAATTTATGATAATCATTTTAAAATTAATAATTAATC
725475 AAAATA
1 AAAATA
725481 TTAGGTTTTA
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
50 8 0.16
53 5 0.10
56 9 0.18
57 28 0.56
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (53 bp):
AAAATAATTAAATATATAATTTATGATAATCATTTTAAAATTAATAATTAATC
Found at i:730329 original size:2 final size:2
Alignment explanation
Indices: 730322--730346 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
730312 TGGCAACTGT
730322 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
730347 CCTTTTTGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:736664 original size:214 final size:214
Alignment explanation
Indices: 736289--736689 Score: 527
Period size: 214 Copynumber: 1.9 Consensus size: 214
736279 TTAATAATTT
* * * * *
736289 AAGAGTGGCAGCCACGTAACCTTTGCTATGTATGACCTTAGTTTCATCTTCTGTGAAATGGATAA
1 AAGAGTGGCAGCCACGTAACCTTTGCCATGCATGACATTAGTTTCATATTCGGTGAAATGGATAA
* * * * *
736354 TGAATAAGTTCTTGGTATTTAGAAGATTCAAAAGGGAAAGCCAATGAGTAGACTTGAAATCGAAA
66 TGAATAAGTTCTTGCTATTTAGAAGATTCAAAAGGGAAAGACAAGGAGTAGACATGAAATAGAAA
* *
736419 GGAAAAAGAAGAAGACAAATAGAAGGATGAAAGGAACATAGAACTAGGAGGAAATTAAAAAAGAA
131 GGAAAAAGAAGAAAACAAATAGAACGATGAAAGGAACATAGAACTAGGAGGAAATTAAAAAAGAA
736484 AAGCTGGTAATTTAGGAAG
196 AAGCTGGTAATTTAGGAAG
* *
736503 AAGAGTGGCTGCCATGTAA-CTGTTGCCATGCATGACATTAGTTTCATATTCGGTGAAATGGATA
1 AAGAGTGGCAGCCACGTAACCT-TTGCCATGCATGACATTAGTTTCATATTCGGTGAAATGGATA
* * * *
736567 ATGAATAAGTTCTT-CTAATTTAGAAGATTTAAAAGGGAAAGATAAGGATTAGACATGAATTAGA
65 ATGAATAAGTTCTTGCT-ATTTAGAAGATTCAAAAGGGAAAGACAAGGAGTAGACATGAAATAGA
** *** ** * *
736631 AAGGAACGATTCGAAAACAAATAGAACGATGAAAGGAATGTAGAGCTAGGGGGAAATTA
129 AAGGAAAAAGAAGAAAACAAATAGAACGATGAAAGGAACATAGAACTAGGAGGAAATTA
736690 GAGGAGAAGA
Statistics
Matches: 158, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
213 3 0.02
214 155 0.98
ACGTcount: A:0.41, C:0.10, G:0.24, T:0.24
Consensus pattern (214 bp):
AAGAGTGGCAGCCACGTAACCTTTGCCATGCATGACATTAGTTTCATATTCGGTGAAATGGATAA
TGAATAAGTTCTTGCTATTTAGAAGATTCAAAAGGGAAAGACAAGGAGTAGACATGAAATAGAAA
GGAAAAAGAAGAAAACAAATAGAACGATGAAAGGAACATAGAACTAGGAGGAAATTAAAAAAGAA
AAGCTGGTAATTTAGGAAG
Found at i:743872 original size:34 final size:35
Alignment explanation
Indices: 743820--743919 Score: 120
Period size: 34 Copynumber: 3.0 Consensus size: 35
743810 CAAGTGATTG
*
743820 AGAA-GTTCTATCTCAGCTT-TAAAAAAGATAAGGA
1 AGAAGGTTCTATCTTAGCTTCTAAAAAAGAT-AGGA
* *
743854 A-AATGTTCTATCTTAGCTTCT-GAAAAGATAGGA
1 AGAAGGTTCTATCTTAGCTTCTAAAAAAGATAGGA
*
743887 AGAAGGTTCTATCTTAGCTTGTAAAAAA-ATAGG
1 AGAAGGTTCTATCTTAGCTTCTAAAAAAGATAGG
743920 GTTGTAAGAT
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
33 7 0.12
34 45 0.79
35 5 0.09
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.30
Consensus pattern (35 bp):
AGAAGGTTCTATCTTAGCTTCTAAAAAAGATAGGA
Found at i:748927 original size:20 final size:20
Alignment explanation
Indices: 748902--748952 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
748892 CAGTTTCATA
*
748902 TATCGATACAATTGAGTATG
1 TATCGATACAATTGAGCATG
*
748922 TATCGATA-AAATGAGCATG
1 TATCGATACAATTGAGCATG
748941 TATCGATACAAT
1 TATCGATACAAT
748953 GTATCGATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 17 0.63
20 10 0.37
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (20 bp):
TATCGATACAATTGAGCATG
Found at i:748956 original size:13 final size:13
Alignment explanation
Indices: 748938--748963 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
748928 TAAAATGAGC
748938 ATGTATCGATACA
1 ATGTATCGATACA
748951 ATGTATCGATACA
1 ATGTATCGATACA
748964 TTATGCTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:748977 original size:20 final size:20
Alignment explanation
Indices: 748952--749002 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
748942 ATCGATACAA
* *
748952 TGTATCGATACAT-TATGCTT
1 TGTATCGATACATCTA-GATG
748972 TGTATCGATACATCTAGATG
1 TGTATCGATACATCTAGATG
748992 TGTATCGATAC
1 TGTATCGATAC
749003 TTTCTAAGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 26 0.93
21 2 0.07
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATCTAGATG
Found at i:749705 original size:30 final size:30
Alignment explanation
Indices: 749634--749715 Score: 110
Period size: 31 Copynumber: 2.7 Consensus size: 30
749624 CTCTTATGTT
749634 AAAATAATTTTCTCCCCCTTTTTGTTATCAA
1 AAAATAA-TTTCTCCCCCTTTTTGTTATCAA
* * *
749665 AAAAGAAATTTCTCTCGCTTTTTGTTATCAA
1 AAAA-TAATTTCTCCCCCTTTTTGTTATCAA
*
749696 AAAATAATTTCTCCTCCTTT
1 AAAATAATTTCTCCCCCTTT
749716 GTCAAATCCA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
30 12 0.28
31 29 0.67
32 2 0.05
ACGTcount: A:0.30, C:0.21, G:0.05, T:0.44
Consensus pattern (30 bp):
AAAATAATTTCTCCCCCTTTTTGTTATCAA
Found at i:749738 original size:20 final size:20
Alignment explanation
Indices: 749713--749760 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
749703 TTTCTCCTCC
749713 TTTGTCAAAT-CCAAAATTTA
1 TTTGTCAAATGCC-AAATTTA
749733 TTTGTCAAATGCCAAATTTA
1 TTTGTCAAATGCCAAATTTA
749753 TTT-TCAAA
1 TTTGTCAAA
749761 ATTTTCTTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.19
20 20 0.74
21 2 0.07
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.42
Consensus pattern (20 bp):
TTTGTCAAATGCCAAATTTA
Found at i:751612 original size:80 final size:80
Alignment explanation
Indices: 751477--751772 Score: 257
Period size: 79 Copynumber: 3.7 Consensus size: 80
751467 AAAGCATTGA
* * * * *
751477 ATTTTTCGTTATCAGAGATACTCCAACCTTATCATTTCTT-AGGGGATACTTCAACCCCGTTTTT
1 ATTTTTCATCATC-GAGATACTCTAACCTCATCATTT-TTGAGGGGATACTCCAACCCCGTTTTT
751541 ACTTTCAAAATATATCG
64 ACTTTCAAAATATATCG
* **
751558 ATTTTTCACCATCGATGATACT-TCAACC-CATCATTTTTGAGGGGATACTCCAACCTTGTTTTT
1 ATTTTTCATCATCGA-GATACTCT-AACCTCATCATTTTTGAGGGGATACTCCAACCCCGTTTTT
**
751621 A-TTTTTAAA-ATATCG
64 ACTTTCAAAATATATCG
* * * * * * *
751636 ATTTTTAATGATTAGGGATACTCTAACCT-ATCAGTTTCTGAGGGGATACTCTAACCCCGTCTTT
1 ATTTTTCATCA-TCGAGATACTCTAACCTCATCA-TTTTTGAGGGGATACTCCAACCCCGTTTTT
* **
751700 ACTTCCAAAATAT-TAA
64 ACTTTCAAAATATATCG
* * * *
751716 ATTTTTCATC-TCGGAGATACTCTAACCTCACCATCTTCGAGGGAATACTCCAACCCC
1 ATTTTTCATCATC-GAGATACTCTAACCTCATCATTTTTGAGGGGATACTCCAACCCC
751773 AATTTTCACC
Statistics
Matches: 169, Mismatches: 35, Indels: 24
0.74 0.15 0.11
Matches are distributed among these distances:
78 29 0.17
79 70 0.41
80 48 0.28
81 22 0.13
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (80 bp):
ATTTTTCATCATCGAGATACTCTAACCTCATCATTTTTGAGGGGATACTCCAACCCCGTTTTTAC
TTTCAAAATATATCG
Found at i:753317 original size:19 final size:19
Alignment explanation
Indices: 753280--753314 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
753270 TGATATGAGT
753280 GAAAATTTAAATAATTTTA
1 GAAAATTTAAATAATTTTA
753299 GAAAA-TTAAAT-ATTTT
1 GAAAATTTAAATAATTTT
753315 TTATTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 6 0.38
19 5 0.31
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (19 bp):
GAAAATTTAAATAATTTTA
Found at i:765967 original size:18 final size:18
Alignment explanation
Indices: 765914--765973 Score: 57
Period size: 20 Copynumber: 3.2 Consensus size: 18
765904 AAAATATAAA
* *
765914 TAATAATTATATTATAATT
1 TAATAATT-TATTAAAAAT
* *
765933 TAAATTATTTTTATAAAAAT
1 T-AATAATTTAT-TAAAAAT
765953 TAATAATTTATTAAAAAT
1 TAATAATTTATTAAAAAT
765971 TAA
1 TAA
765974 ATACTTACTT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
18 10 0.30
19 11 0.33
20 12 0.36
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
TAATAATTTATTAAAAAT
Found at i:774212 original size:13 final size:13
Alignment explanation
Indices: 774196--774222 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
774186 AACATGAACC
774196 TAAGTCTTATTTT
1 TAAGTCTTATTTT
774209 TAAGTCTTATTTT
1 TAAGTCTTATTTT
774222 T
1 T
774223 TTTCCCCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.63
Consensus pattern (13 bp):
TAAGTCTTATTTT
Found at i:776460 original size:15 final size:17
Alignment explanation
Indices: 776430--776461 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
776420 ATGTAGTAGT
776430 ATGACATAAGGAAAATG
1 ATGACATAAGGAAAATG
776447 ATGA-ATAA-GAAAATG
1 ATGACATAAGGAAAATG
776462 GATAACCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 4 0.27
17 4 0.27
ACGTcount: A:0.56, C:0.03, G:0.22, T:0.19
Consensus pattern (17 bp):
ATGACATAAGGAAAATG
Found at i:780019 original size:19 final size:18
Alignment explanation
Indices: 779995--780033 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
779985 TCTAAGTTGG
*
779995 AATCATTAAAATCTCAACA
1 AATCATCAAAAT-TCAACA
*
780014 AATCATCAGAATTCAACA
1 AATCATCAAAATTCAACA
780032 AA
1 AA
780034 GCCAAGACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.54, C:0.21, G:0.03, T:0.23
Consensus pattern (18 bp):
AATCATCAAAATTCAACA
Found at i:782621 original size:2 final size:2
Alignment explanation
Indices: 782614--782650 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
782604 GTCATGAAAT
* *
782614 TA TA TA TA TA TA TA TG TA TC TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
782651 TTTAGCATGC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:790762 original size:16 final size:15
Alignment explanation
Indices: 790741--790770 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
790731 TTAAGAAAGA
790741 AAAAATAATAAAAATG
1 AAAAATAA-AAAAATG
790757 AAAAATAAAAAAAT
1 AAAAATAAAAAAAT
790771 ACCTAACTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (15 bp):
AAAAATAAAAAAATG
Found at i:791704 original size:32 final size:33
Alignment explanation
Indices: 791641--791708 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
791631 CGTTACAAGC
791641 CAATGTATCGATACATTTGGTCATGTATCGATA
1 CAATGTATCGATACATTTGGTCATGTATCGATA
*
791674 CAATGTATTGATACATCTT-GT-ATGTATCGATA
1 CAATGTATCGATACAT-TTGGTCATGTATCGATA
791706 CAA
1 CAA
791709 ACAGTTAAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 14 0.42
33 17 0.52
34 2 0.06
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (33 bp):
CAATGTATCGATACATTTGGTCATGTATCGATA
Found at i:800446 original size:13 final size:13
Alignment explanation
Indices: 800428--800453 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
800418 ACATTTGGTC
800428 ATGTATCGATACA
1 ATGTATCGATACA
800441 ATGTATCGATACA
1 ATGTATCGATACA
800454 TCTTGTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:800448 original size:33 final size:32
Alignment explanation
Indices: 800406--800473 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
800396 CGTTACAAGC
800406 CAATGTATCGATACAT-TTGGTCATGTATCGATA
1 CAATGTATCGATACATCTT-GT-ATGTATCGATA
800439 CAATGTATCGATACATCTTGTATGTATCGATA
1 CAATGTATCGATACATCTTGTATGTATCGATA
800471 CAA
1 CAA
800474 ACAGTTAAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
32 14 0.41
33 18 0.53
34 2 0.06
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (32 bp):
CAATGTATCGATACATCTTGTATGTATCGATA
Found at i:800560 original size:13 final size:13
Alignment explanation
Indices: 800542--800566 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
800532 TACAGTGGTC
800542 ATGTATCGATACA
1 ATGTATCGATACA
800555 ATGTATCGATAC
1 ATGTATCGATAC
800567 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:800584 original size:33 final size:32
Alignment explanation
Indices: 800525--800587 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
800515 ATCTTTGCAA
*
800525 GTATCGATACAGTGGTCATGTATCGATACAAT
1 GTATCGATACAGTGATCATGTATCGATACAAT
* *
800557 GTATCGATACTGTGCATTATGTATCGATACA
1 GTATCGATACAGTG-ATCATGTATCGATACA
800588 TTTGAGGGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (32 bp):
GTATCGATACAGTGATCATGTATCGATACAAT
Found at i:807508 original size:21 final size:20
Alignment explanation
Indices: 807459--807512 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
807449 CATTTCAAGC
*
807459 ATGTATCGATACATTCACTT
1 ATGTATCGATACATTAACTT
*
807479 ATATATCGATACATTAACTT
1 ATGTATCGATACATTAACTT
807499 ATTGTATCGATACA
1 A-TGTATCGATACA
807513 AATTTTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 19 0.63
21 11 0.37
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATTAACTT
Found at i:808042 original size:85 final size:85
Alignment explanation
Indices: 807899--808069 Score: 342
Period size: 85 Copynumber: 2.0 Consensus size: 85
807889 AATACTAATG
807899 ACCTGGTTACTACATAGGTGCTTCAAAGGTTGCTTAAGCAGAATAATAAGAGTTTGAGTATTGCT
1 ACCTGGTTACTACATAGGTGCTTCAAAGGTTGCTTAAGCAGAATAATAAGAGTTTGAGTATTGCT
807964 AAGTTTGATTTCAATTTGCT
66 AAGTTTGATTTCAATTTGCT
807984 ACCTGGTTACTACATAGGTGCTTCAAAGGTTGCTTAAGCAGAATAATAAGAGTTTGAGTATTGCT
1 ACCTGGTTACTACATAGGTGCTTCAAAGGTTGCTTAAGCAGAATAATAAGAGTTTGAGTATTGCT
808049 AAGTTTGATTTCAATTTGCT
66 AAGTTTGATTTCAATTTGCT
808069 A
1 A
808070 TATTTTGCAT
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (85 bp):
ACCTGGTTACTACATAGGTGCTTCAAAGGTTGCTTAAGCAGAATAATAAGAGTTTGAGTATTGCT
AAGTTTGATTTCAATTTGCT
Found at i:813106 original size:2 final size:2
Alignment explanation
Indices: 813062--813092 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
813052 GTCCCTAGAA
813062 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
813093 AAATAGTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:824636 original size:21 final size:20
Alignment explanation
Indices: 824588--824646 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 20
824578 AAAAACCCAA
*
824588 AATGTATCGATAC-ATTGAT
1 AATGTATCGATACAATTGAG
*
824607 AATTGTATCGATACAATCTTAG
1 AA-TGTATCGATACAAT-TGAG
*
824629 AATGTATCGATTCAATTG
1 AATGTATCGATACAATTG
824647 CTTGAGTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
19 2 0.06
20 12 0.36
21 15 0.45
22 4 0.12
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (20 bp):
AATGTATCGATACAATTGAG
Found at i:825789 original size:27 final size:24
Alignment explanation
Indices: 825745--825797 Score: 61
Period size: 27 Copynumber: 2.1 Consensus size: 24
825735 ATTTTAGAGT
**
825745 AAAAGTGGGGTTGGAGTATTCCCTTG
1 AAAAGTGGGGTTAAAGTA-T-CCTTG
825771 AAAATGTGGGGTTAAAGTATCCTTG
1 AAAA-GTGGGGTTAAAGTATCCTTG
825796 AA
1 AA
825798 GCTATAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 7 0.29
26 5 0.21
27 12 0.50
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.30
Consensus pattern (24 bp):
AAAAGTGGGGTTAAAGTATCCTTG
Found at i:829005 original size:438 final size:433
Alignment explanation
Indices: 827869--829168 Score: 1816
Period size: 437 Copynumber: 3.0 Consensus size: 433
827859 AGTAACATGA
* * * *
827869 TGAAAATATTGAAAAATCAGGAGACA--CATGATTTAAGTGAATGATGTTTACCAAAA-ATCTCT
1 TGAAAATGTTGAAAAATCAGGAGACATGC-TGATTTAAGTGAAGGATGTATACCAAAAGATCTCA
827931 AGCTTCAGCCTTTTCTTTGAGCAACACCTTTGAGTCACGTTTTTTAGGTTAATTAACAAAAGAAT
65 AGCTTCAGCCTTTTCTTTGAGCAACACC-TTGAGTCACGTTTTTTAGGTTAATTAACAAAAGAAT
*** * * *
827996 GGTAAATGGGGTTACTTTTTTGTTGATTATTGGTGGAAAAAGGTTTTTGGAAGGAATAAGAGTGA
129 GGTAAAAAAGGTTA-TTTTTTGTTGATTATTGGTGGAAGAAGGTTTTTGGATGGAATGAGAGTGA
* * * *
828061 GAAATAAGGACTTTTAGAGAGCTTTTAGTGATGGTTTTAGAGATATTCAAGAATAAAGGCAAGTT
193 GAAATAAGGGCTTTTAGAGAGGTTTTGGTGATGGTTTTAGAGAAATTCAAGAATAAAGGCAAGTT
* * * *
828126 TTCTTTTTGATTTTCTTCTTT-TTTGTGGTTGGGATCTCCTTTGCTGAACCTTCAAGCTTCACTT
258 TTCTTTATGATTTTCTT-TTTCTTAGTGGTTAGGATCTCCTTTGCTGAACCTTCAAGCTTTACTT
* * *
828190 GTATAGCCATGTGGACATAAAGACAAAAACTAGAAAAGTTGGTGATTGTAGGTGGGTTTGGTGCA
322 GTATAGCCATGTGGCCATAAAGACAAAAACTA-AAAAATTGGTGCTTGTAGGTGGGTTTGGTGCA
* *
828255 TGCACTGCATGCAGAGATTAGGTGCAGTACTCAGCTTTTGAAAAATGT
386 TGCACTGCATGTAGAGATTAGGTGCAGTACTCAACTTTTGAAAAATGT
* * * * *
828303 TAAAAATGTTGAAAAATCATGAGATATGCTAATTTAAGTGAGGGATGTATACCAAAAGATCTCAA
1 TGAAAATGTTGAAAAATCAGGAGACATGCTGATTTAAGTGAAGGATGTATACCAAAAGATCTCAA
* * * * *
828368 GCTTTAGCCTTTTTTTTGAGCAACACCCTTAAGTCACATTTTTTAGGTTAATCAACAAAAGAATG
66 GCTTCAGCCTTTTCTTTGAGCAACA-CCTTGAGTCACGTTTTTTAGGTTAATTAACAAAAGAATG
* * **
828433 GTAAAAATAGGTCAATTTTTTGTTGATTATTGGTGGAAGAAGGCTTTTGGATTCAATGAGAGTGA
130 GTAAAAA-AGGT-TATTTTTTGTTGATTATTGGTGGAAGAAGGTTTTTGGATGGAATGAGAGTGA
*
828498 GAAATAAGGGCTTTTAGAGAGGTTTTGGTGATGGTTTTAGAGAAATTCAAGAATAATGGCAAGTT
193 GAAATAAGGGCTTTTAGAGAGGTTTTGGTGATGGTTTTAGAGAAATTCAAGAATAAAGGCAAGTT
* * * * * * *
828563 TTCTTTCTGATTTTCTTTTTCTTAGTGGCTAAGATCTCTTTTGCTAAACTTTCAAGCTTTGCTTG
258 TTCTTTATGATTTTCTTTTTCTTAGTGGTTAGGATCTCCTTTGCTGAACCTTCAAGCTTTACTTG
* * * * *
828628 TATAACCGTGTGGCCATAGAGACAAAAACTGAAAAAATAGGTGCTTATAGGTGGGTTTGGTGCAT
323 TATAGCCATGTGGCCATAAAGACAAAAACT-AAAAAATTGGTGCTTGTAGGTGGGTTTGGTGCAT
* * * * *
828693 GTATTGCATGTAGAAATTAGGTGTAGTACTCAATTTTTGAAAAAGATGT
387 GCACTGCATGTAGAGATTAGGTGCAGTACTCAACTTTTG-AAAA-ATGT
828742 TGAAAATGTTGAAAAATCAGGAGACATGCTGATTTAAGTGAAGGATGTATACCAAAAGATCTCAA
1 TGAAAATGTTGAAAAATCAGGAGACATGCTGATTTAAGTGAAGGATGTATACCAAAAGATCTCAA
828807 GCTTCAGCCTTTTCTTTCGAGCAACACTCTTGAGTCACGTTTTTTAGGTTAATTAACAAAAGAAT
66 GCTTCAGCCTTTTCTTT-GAGCAACAC-CTTGAGTCACGTTTTTTAGGTTAATTAACAAAAGAAT
* * * *
828872 GGTAAAAAAGGTTATTTTTTGTTGATTATTGATGGATGAAGGTTTTTGGATGGAATGTGAGTAAG
129 GGTAAAAAAGGTTATTTTTTGTTGATTATTGGTGGAAGAAGGTTTTTGGATGGAATGAGAGTGAG
* * **
828937 AAATAAGGGCTTTTAAAAAGGTTTTGGTGATGGTTTTAGAGAAATTTGAGAATAAAGGCAAGTTT
194 AAATAAGGGCTTTTAGAGAGGTTTTGGTGATGGTTTTAGAGAAATTCAAGAATAAAGGCAAGTTT
* * **
829002 TCTTTATGATTTTCTTCTTCTTGGTGGTTAGGATCTCCTTTGCTGAACCTTCAAGCTTTACTTAC
259 TCTTTATGATTTTCTTTTTCTTAGTGGTTAGGATCTCCTTTGCTGAACCTTCAAGCTTTACTTGT
* *
829067 ATAGCCATATGGCCATAAAGACAAAAACTAAAAAAGTTGGTGCTTGTAAGTGGGTTTGGTGCATG
324 ATAGCCATGTGGCCATAAAGACAAAAACTAAAAAA-TTGGTGCTTGTAGGTGGGTTTGGTGCATG
*
829132 CACTGCATGTAGAGATTAGGTGCAGTACTCAGCTTTT
388 CACTGCATGTAGAGATTAGGTGCAGTACTCAACTTTT
829169 TGTGGCCTAT
Statistics
Matches: 752, Mismatches: 101, Indels: 22
0.86 0.12 0.03
Matches are distributed among these distances:
434 22 0.03
435 24 0.03
436 72 0.10
437 253 0.34
438 247 0.33
439 84 0.11
440 50 0.07
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.35
Consensus pattern (433 bp):
TGAAAATGTTGAAAAATCAGGAGACATGCTGATTTAAGTGAAGGATGTATACCAAAAGATCTCAA
GCTTCAGCCTTTTCTTTGAGCAACACCTTGAGTCACGTTTTTTAGGTTAATTAACAAAAGAATGG
TAAAAAAGGTTATTTTTTGTTGATTATTGGTGGAAGAAGGTTTTTGGATGGAATGAGAGTGAGAA
ATAAGGGCTTTTAGAGAGGTTTTGGTGATGGTTTTAGAGAAATTCAAGAATAAAGGCAAGTTTTC
TTTATGATTTTCTTTTTCTTAGTGGTTAGGATCTCCTTTGCTGAACCTTCAAGCTTTACTTGTAT
AGCCATGTGGCCATAAAGACAAAAACTAAAAAATTGGTGCTTGTAGGTGGGTTTGGTGCATGCAC
TGCATGTAGAGATTAGGTGCAGTACTCAACTTTTGAAAAATGT
Found at i:835095 original size:32 final size:31
Alignment explanation
Indices: 835040--835109 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 31
835030 AAACAGTAAT
835040 TGTATCGATGAATAATGTTGTATCGATACAA
1 TGTATCGATGAATAATGTTGTATCGATACAA
835071 TGTATCGAT-AGATAAGTGTTGTATCGATACAA
1 TGTATCGATGA-ATAA-TGTTGTATCGATACAA
835103 TGTATCG
1 TGTATCG
835110 CTACGAGGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
30 1 0.03
31 13 0.35
32 23 0.62
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (31 bp):
TGTATCGATGAATAATGTTGTATCGATACAA
Found at i:838476 original size:13 final size:13
Alignment explanation
Indices: 838432--838475 Score: 60
Period size: 11 Copynumber: 3.7 Consensus size: 13
838422 AAATGATAAA
838432 AACAAAAAA-AA-
1 AACAAAAAACAAC
838443 AACAAAAAACAAC
1 AACAAAAAACAAC
838456 AACAAAAAAC-AC
1 AACAAAAAACAAC
838468 -ACAAAAAA
1 AACAAAAAA
838476 AGAGTGTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
11 17 0.55
12 4 0.13
13 10 0.32
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (13 bp):
AACAAAAAACAAC
Found at i:839726 original size:31 final size:31
Alignment explanation
Indices: 839689--840332 Score: 387
Period size: 31 Copynumber: 20.7 Consensus size: 31
839679 ATTTCTCTTC
*
839689 TCAAAGTCCACGACTCAGTGGCATCTTTTTT
1 TCAAAGTCCACAACTCAGTGGCATCTTTTTT
* * *
839720 TTAAAGTCCACAACTCAGTGGCAAT-TATTTC
1 TCAAAGTCCACAACTCAGTGGC-ATCTTTTTT
* * *
839751 TCAAAGTCCACGACTCAGTGGCATC-TCTTC
1 TCAAAGTCCACAACTCAGTGGCATCTTTTTT
*
839781 TCAAAGTCCACGACTCAGTGGCATCTCTTTTCT
1 TCAAAGTCCACAACTCAGTGGCATCT-TTTT-T
* * * * * *
839814 TCAAAGTCTACGACTTACTGGCATC-TTATC
1 TCAAAGTCCACAACTCAGTGGCATCTTTTTT
* * * *
839844 TCAAAGTCCACGACTTAGTGGCAATC-TCTTC
1 TCAAAGTCCACAACTCAGTGGC-ATCTTTTTT
* **
839875 CCAAAGTCCATGACTCAGTGGCAT-TTTTTCT
1 TCAAAGTCCACAACTCAGTGGCATCTTTTT-T
* * *
839906 CCAAAATCAACAACTCAGTGGCAT-TTTTTCT
1 TCAAAGTCCACAACTCAGTGGCATCTTTTT-T
* * *
839937 CCAAAGTCCACAACTCAGTGGCAATC-TCTTC
1 TCAAAGTCCACAACTCAGTGGC-ATCTTTTTT
* ** * * *
839968 TCAAAGCCCATGACTCAGTGGTAT-TTTGTC
1 TCAAAGTCCACAACTCAGTGGCATCTTTTTT
* *
839998 CCAAAGTCCACGACTCAGTGGCAT-TTTTTCT
1 TCAAAGTCCACAACTCAGTGGCATCTTTTT-T
* *
840029 CCAAAGTCCACAACTCAGTGGCAATC-TCTTT
1 TCAAAGTCCACAACTCAGTGGC-ATCTTTTTT
* * *
840060 TCAAAATCCACGACTCAGTGGCATCTTTTCT
1 TCAAAGTCCACAACTCAGTGGCATCTTTTTT
* *
840091 TCAAAGCCCACTAACTCCA-TGGCACCTTTTTCTTT
1 TCAAAGTCCAC-AACT-CAGTGGCA--TCTTT-TTT
* * * * *
840126 TCAAAGCCCATAACTCCGTGACATC--CTTT
1 TCAAAGTCCACAACTCAGTGGCATCTTTTTT
**
840155 T--AAGTCCACAACTTTGTGGCATCTTTTCTT
1 TCAAAGTCCACAACTCAGTGGCATCTTTT-TT
*
840185 T-AAAGCCCACAACTTC-GTGGCATCTTTTTTTTT
1 TCAAAGTCCACAAC-TCAGTGGCATC---TTTTTT
* * *
840218 TCAAAGCCCACAACTCTGTGGCATC--CTTT
1 TCAAAGTCCACAACTCAGTGGCATCTTTTTT
*
840247 T--AAGTCCACAACTCTGTGGCATCTTTTTCCT
1 TCAAAGTCCACAACTCAGTGGCATCTTTTT--T
** * *
840278 TTTAAGTCCACAACTCTGTGGCACCTTTTCCTT
1 TCAAAGTCCACAACTCAGTGGCATCTTTT--TT
* *
840311 T-TAAGTCCACAACTCCGTGGCA
1 TCAAAGTCCACAACTCAGTGGCA
840333 CCCTTTTAAG
Statistics
Matches: 499, Mismatches: 75, Indels: 77
0.77 0.12 0.12
Matches are distributed among these distances:
27 38 0.08
29 11 0.02
30 90 0.18
31 209 0.42
32 45 0.09
33 57 0.11
34 36 0.07
35 13 0.03
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.33
Consensus pattern (31 bp):
TCAAAGTCCACAACTCAGTGGCATCTTTTTT
Found at i:839813 original size:62 final size:61
Alignment explanation
Indices: 839686--840107 Score: 447
Period size: 62 Copynumber: 6.8 Consensus size: 61
839676 CAAATTTCTC
* * *
839686 TTCTCAAAGTCCACGACTCAGTGGCATCTTTTTTTTAAAGTCCACAACTCAGTGGCAATTAT
1 TTCTCAAAGTCCACGACTCAGTGGCATC-TTTTCTCAAAGTCCACAACTCAGTGGCAATTTT
* *
839748 TTCTCAAAGTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACGACTCAGTGGC-ATCTCTT
1 TTCTCAAAGTCCACGACTCAGTGGCATCTTTTCTCAAAGTCCACAACTCAGTGGCAAT-T-TT
* * * * * * * *
839810 TTCTTCAAAGTCTACGACTTACTGGCATCTTATCTCAAAGTCCACGACTTAGTGGCAATCTC
1 TTC-TCAAAGTCCACGACTCAGTGGCATCTTTTCTCAAAGTCCACAACTCAGTGGCAATTTT
* * * * *
839872 TTCCCAAAGTCCATGACTCAGTGGCATTTTTTCTCCAAAATCAACAACTCAGTGGC-ATTTT
1 TTCTCAAAGTCCACGACTCAGTGGCATCTTTTCT-CAAAGTCCACAACTCAGTGGCAATTTT
* * * ** *
839933 TTCTCCAAAGTCCACAACTCAGTGGCAATCTCTTCTCAAAGCCCATGACTCAGTGG-TATTTT
1 TTCT-CAAAGTCCACGACTCAGTGGC-ATCTTTTCTCAAAGTCCACAACTCAGTGGCAATTTT
* * * *
839995 GTCCCAAAGTCCACGACTCAGTGGCATTTTTTCTCCAAAGTCCACAACTCAGTGGCAATCTCT
1 TTCTCAAAGTCCACGACTCAGTGGCATCTTTTCT-CAAAGTCCACAACTCAGTGGCAAT-TTT
* *
840058 TT-TCAAAATCCACGACTCAGTGGCATCTTTTCTTCAAAGCCCACTAACTC
1 TTCTCAAAGTCCACGACTCAGTGGCATCTTTTC-TCAAAGTCCAC-AACTC
840108 CATGGCACCT
Statistics
Matches: 296, Mismatches: 51, Indels: 25
0.80 0.14 0.07
Matches are distributed among these distances:
60 9 0.03
61 91 0.31
62 132 0.45
63 62 0.21
64 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (61 bp):
TTCTCAAAGTCCACGACTCAGTGGCATCTTTTCTCAAAGTCCACAACTCAGTGGCAATTTT
Found at i:840048 original size:92 final size:93
Alignment explanation
Indices: 839682--840332 Score: 544
Period size: 92 Copynumber: 7.0 Consensus size: 93
839672 TCTTCAAATT
**
839682 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTTTTT-TTTAAAGTCCACAACTCAGTGGCAATT
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTTTTTCTCCAAAGTCCACAACTCAGTGGC-ATT
* *
839746 ATTTCTCAAAGTCCACGACTCAGTGGC-A
65 TTTTCTCAAAGTCCACAACTCAGTGGCAA
* * * * * *
839774 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTCTTTTCTTCAAAGTCTACGACTTACTGGCATC
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCT-TTTTCTCCAAAGTCCACAACTCAGTGGCATT
* * *
839839 TTATCTCAAAGTCCACGACTTAGTGGCAA
65 TTTTCTCAAAGTCCACAACTCAGTGGCAA
* * * *
839868 TCTCTTCCCAAAGTCCATGACTCAGTGGCAT-TTTTTCTCCAAAATCAACAACTCAGTGGCATTT
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTTTTTCTCCAAAGTCCACAACTCAGTGGCATTT
839932 TTTCTCCAAAGTCCACAACTCAGTGGCAA
66 TTTCT-CAAAGTCCACAACTCAGTGGCAA
* * * * *
839961 TCTCTTCTCAAAGCCCATGACTCAGTGGTAT-TTTGTC-CCAAAGTCCACGACTCAGTGGCATTT
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTTTTTCTCCAAAGTCCACAACTCAGTGGCATTT
840024 TTTCTCCAAAGTCCACAACTCAGTGGCAA
66 TTTCT-CAAAGTCCACAACTCAGTGGCAA
* * * *
840053 TCTCTTTTCAAAATCCACGACTCAGTGGCATC-TTTTCTTCAAAGCCCACTAACTCCA-TGGCAC
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTTTTTCTCCAAAGTCCAC-AACT-CAGTGGCA-
* * * * *
840116 CTTTTTCTTTTCAAAGCCCATAACTCCGTGAC-A
63 --TTTT-TTCTCAAAGTCCACAACTCAGTGGCAA
* * ** ** *
840149 TC-CTT-T-TAAGTCCACAACTTTGTGGCATC-TTTTCTTTAAAGCCCACAACTTC-GTGGCATC
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTTTTTCTCCAAAGTCCACAAC-TCAGTGGCA--
* * *
840209 TTTTTTTTTTCAAAGCCCACAACTCTGTGGC-A
63 --TTTTTTCTCAAAGTCCACAACTCAGTGGCAA
* * * *** * *
840241 TC-CTT-T-TAAGTCCACAACTCTGTGGCATCTTTTTCCTTTTAAGTCCACAACTCTGTGGCACC
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTTTTT-CTCCAAAGTCCACAACTCAGTGGCA-T
* ** *
840303 TTTTCCTTTTAAGTCCACAACTCCGTGGCA
64 TTTTTC-TCAAAGTCCACAACTCAGTGGCA
840333 CCCTTTTAAG
Statistics
Matches: 476, Mismatches: 63, Indels: 39
0.82 0.11 0.07
Matches are distributed among these distances:
91 4 0.01
92 222 0.47
93 141 0.30
94 77 0.16
95 5 0.01
96 3 0.01
97 21 0.04
98 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (93 bp):
TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTTTTTCTCCAAAGTCCACAACTCAGTGGCATTT
TTTCTCAAAGTCCACAACTCAGTGGCAA
Found at i:840224 original size:34 final size:32
Alignment explanation
Indices: 840077--840416 Score: 173
Period size: 33 Copynumber: 10.9 Consensus size: 32
840067 CCACGACTCA
* *
840077 GTGGCATC-TTTTCTTCAAAGCCCACTAACTCC
1 GTGGCATCTTTTTCTTTAAAGCCCAC-AACTTC
* * * *
840109 ATGGCACCTTTTTCTTTTCAAAGCCCATAACTCC
1 GTGGCATCTTTTTC-TTT-AAAGCCCACAACTTC
* * * *
840143 GTGACATC-----CTTTTAAGTCCACAACTTT
1 GTGGCATCTTTTTCTTTAAAGCCCACAACTTC
840170 GTGGCATC-TTTTCTTTAAAGCCCACAACTTC
1 GTGGCATCTTTTTCTTTAAAGCCCACAACTTC
*
840201 GTGGCATCTTTTTTTTTTCAAAGCCCACAAC-TC
1 GTGGCATC-TTTTTCTTT-AAAGCCCACAACTTC
* *
840234 TGTGGCATC-----CTTTTAAGTCCACAAC-TC
1 -GTGGCATCTTTTTCTTTAAAGCCCACAACTTC
* *
840261 TGTGGCATCTTTTTCCTTTTAAGTCCACAAC-TC
1 -GTGGCATCTTTTT-CTTTAAAGCCCACAACTTC
* * * * *
840294 TGTGGCACCTTTTCCTTTTAAGTCCACAACTCC
1 -GTGGCATCTTTTTCTTTAAAGCCCACAACTTC
* * * *
840327 GTGGCA-C----CCTTTTAAGTCCAC-ACCTC
1 GTGGCATCTTTTTCTTTAAAGCCCACAACTTC
*
840353 TGTGGTATCTTTTTCTTTTTAAAGCCCACAACTTC
1 -GTGGCATCTTTTTC--TTTAAAGCCCACAACTTC
* *
840388 GTGGCATCTTTCTCCTTTTAAGCCCACAA
1 GTGGCATCTTT-TTCTTTAAAGCCCACAA
840417 GTCAGTGGCA
Statistics
Matches: 247, Mismatches: 33, Indels: 55
0.74 0.10 0.16
Matches are distributed among these distances:
26 3 0.01
27 57 0.23
28 7 0.03
29 1 0.00
31 25 0.10
32 29 0.12
33 58 0.23
34 53 0.21
35 14 0.06
ACGTcount: A:0.21, C:0.30, G:0.12, T:0.36
Consensus pattern (32 bp):
GTGGCATCTTTTTCTTTAAAGCCCACAACTTC
Found at i:840255 original size:27 final size:27
Alignment explanation
Indices: 840225--840366 Score: 140
Period size: 27 Copynumber: 4.9 Consensus size: 27
840215 TTTTCAAAGC
840225 CCACAACTCTGTGGCATCCTTTTAAGT
1 CCACAACTCTGTGGCATCCTTTTAAGT
840252 CCACAACTCTGTGGCATCTTTTTCCTTTTAAGT
1 CCACAACTCTGTGGCA------TCCTTTTAAGT
840285 CCACAACTCTGTGGCACCTTTTCCTTTTAAGT
1 CCACAACTCTGTGGCA-----TCCTTTTAAGT
* *
840317 CCACAACTCCGTGGCACCCTTTTAAGT
1 CCACAACTCTGTGGCATCCTTTTAAGT
* * *
840344 CCACACCTCTGTGGTATCTTTTT
1 CCACAACTCTGTGGCATCCTTTT
840367 CTTTTTAAAG
Statistics
Matches: 101, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
27 44 0.44
32 30 0.30
33 27 0.27
ACGTcount: A:0.19, C:0.31, G:0.13, T:0.37
Consensus pattern (27 bp):
CCACAACTCTGTGGCATCCTTTTAAGT
Found at i:840270 original size:61 final size:61
Alignment explanation
Indices: 840149--840426 Score: 189
Period size: 61 Copynumber: 4.4 Consensus size: 61
840139 CTCCGTGACA
* * * * *
840149 TCCTTTTAAGTCCACAACTTTGTGGCATCTTTTCTTTAAAGCCCACAACT-TCGTGGCATCTTTT
1 TCCTTTTAAGCCCACAACTCTGTGGCA---TTCCTTTTAAGTCCACAACTCT-GTGGCATCTTTT
*
840213 T-TTTTTCAAAGCCCACAACTCTGTGGCA-TCCTTTTAAGTCCACAACTCTGTGGCATCTTTT
1 TCCTTTT--AAGCCCACAACTCTGTGGCATTCCTTTTAAGTCCACAACTCTGTGGCATCTTTT
* *
840274 TCCTTTTAAGTCCACAACTCTGTGGCACCTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C----
1 TCCTTTTAAGCCCACAACTCTGTGGCA----TTCCTTTTAAGTCCACAACTCTGTGGCATCTTTT
* * * * *
840334 -CCTTTTAAGTCCACACCTCTGTGGTATCTTTTTCTTTTTAAAGCCCACAACT-TCGTGGCATCT
1 TCCTTTTAAGCCCACAACTCTGTGG---C--ATTCCTTTT-AAGTCCACAACTCT-GTGGCATCT
*
840397 TTC
59 TTT
* *
840400 TCCTTTTAAGCCCACAAGTCAGTGGCA
1 TCCTTTTAAGCCCACAACTCTGTGGCA
840427 ACCTTTAAAA
Statistics
Matches: 173, Mismatches: 19, Indels: 46
0.73 0.08 0.19
Matches are distributed among these distances:
59 23 0.13
60 26 0.15
61 46 0.27
62 7 0.04
63 4 0.02
64 3 0.02
65 44 0.25
67 20 0.12
ACGTcount: A:0.21, C:0.29, G:0.13, T:0.37
Consensus pattern (61 bp):
TCCTTTTAAGCCCACAACTCTGTGGCATTCCTTTTAAGTCCACAACTCTGTGGCATCTTTT
Found at i:840278 original size:33 final size:33
Alignment explanation
Indices: 840149--840426 Score: 250
Period size: 33 Copynumber: 8.8 Consensus size: 33
840139 CTCCGTGACA
*
840149 TCCTTTTAAGTCCACAACTTTGTGGCATC-TTT
1 TCCTTTTAAGTCCACAACTCTGTGGCATCTTTT
* *
840181 T-CTTTAAAGCCCACAACT-TCGTGGCATCTTTT
1 TCCTTTTAAGTCCACAACTCT-GTGGCATCTTTT
* *
840213 T-TTTTTCAAAGCCCACAACTCTGTGGCA------
1 TCCTTTT--AAGTCCACAACTCTGTGGCATCTTTT
840241 TCCTTTTAAGTCCACAACTCTGTGGCATCTTTT
1 TCCTTTTAAGTCCACAACTCTGTGGCATCTTTT
*
840274 TCCTTTTAAGTCCACAACTCTGTGGCA-CCTTT
1 TCCTTTTAAGTCCACAACTCTGTGGCATCTTTT
*
840306 TCCTTTTAAGTCCACAACTCCGTGGCA-C----
1 TCCTTTTAAGTCCACAACTCTGTGGCATCTTTT
* *
840334 -CCTTTTAAGTCCACACCTCTGTGGTATCTTTT
1 TCCTTTTAAGTCCACAACTCTGTGGCATCTTTT
* * *
840366 TCTTTTTAAAGCCCACAACT-TCGTGGCATCTTTC
1 TCCTTTT-AAGTCCACAACTCT-GTGGCATCTTTT
* * *
840400 TCCTTTTAAGCCCACAAGTCAGTGGCA
1 TCCTTTTAAGTCCACAACTCTGTGGCA
840427 ACCTTTAAAA
Statistics
Matches: 206, Mismatches: 19, Indels: 41
0.77 0.07 0.15
Matches are distributed among these distances:
27 42 0.20
28 2 0.01
29 4 0.02
30 1 0.00
31 23 0.11
32 39 0.19
33 50 0.24
34 44 0.21
35 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.13, T:0.37
Consensus pattern (33 bp):
TCCTTTTAAGTCCACAACTCTGTGGCATCTTTT
Found at i:840338 original size:92 final size:91
Alignment explanation
Indices: 840031--840432 Score: 405
Period size: 92 Copynumber: 4.3 Consensus size: 91
840021 TTTTTTCTCC
* * * * * *
840031 AAAGTCCACAACTCAGTGGCAATCTCTTTTCAAAATCCACGACTCAGTGGCATCTTTTCTTCAAA
1 AAAGCCCACAACTCAGTGGC-A-CCCTTTT--AAGTCCACAACTCTGTGGCATCTTTTCTTTAAA
* * *
840096 GCCCACTAACTCCATGGCACCTTTTTCTTTT
62 GCCCAC-AACTTCGTGGCACCTTTTCCTTTT
* * * * *
840127 CAAAGCCCATAACTCCGTGACATCCTTTTAAGTCCACAACTTTGTGGCATCTTTTCTTTAAAGCC
1 -AAAGCCCACAACTCAGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATCTTTTCTTTAAAGCC
* **
840192 CACAACTTCGTGGCATCTTTTTTTTTT
65 CACAACTTCGTGGCACCTTTTCCTTTT
* * *
840219 CAAAGCCCACAACTCTGTGGCATCCTTTTAAGTCCACAACTCTGTGGCATCTTTTTCCTTTTAAG
1 -AAAGCCCACAACTCAGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATC-TTTT-CTTTAAAG
*
840284 TCCACAAC-TCTGTGGCACCTTTTCCTTTT
63 CCCACAACTTC-GTGGCACCTTTTCCTTTT
* * * *
840313 -AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACACCTCTGTGGTATCTTTTTCTTTTTAAAG
1 AAAGCCCACAACTCAGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATC-TTTTC--TTTAAAG
*
840377 CCCACAACTTCGTGGCATCTTTCTCCTTTT
63 CCCACAACTTCGTGGCACCTTT-TCCTTTT
* *
840407 -AAGCCCACAAGTCAGTGGCAACCTTT
1 AAAGCCCACAACTCAGTGGCACCCTTT
840433 AAAAGCCCAC
Statistics
Matches: 262, Mismatches: 36, Indels: 17
0.83 0.11 0.05
Matches are distributed among these distances:
91 1 0.00
92 116 0.44
93 63 0.24
94 60 0.23
95 5 0.02
96 1 0.00
97 16 0.06
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.35
Consensus pattern (91 bp):
AAAGCCCACAACTCAGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATCTTTTCTTTAAAGCCC
ACAACTTCGTGGCACCTTTTCCTTTT
Found at i:840626 original size:92 final size:92
Alignment explanation
Indices: 840463--842143 Score: 1667
Period size: 92 Copynumber: 17.9 Consensus size: 92
840453 GGCATCTTCT
* * *
840463 TTTAAGTCCAATATCGCTAGGCCTTAAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTC
1 TTTAAGTCCAATGTCGCT-GGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAGACCAATGTC
840528 GCTGGCCTTGAATCAGCACATTGGCACC
65 GCTGGCCTTGAATCAGCACATTGGCACC
* * * * *
840556 TTTAAGTCCAATATCACTAGCCTTGAATCAGCATATTGGCACTTTTGTCTTTAAGACCAATGTCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCG
*
840621 TTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
* * * * * * *
840648 TTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTAGCGCCTTTGTCACCTTTAAGTCCAATA
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGT---CTTTAAGACCAATG
*
840713 TCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
63 TCGCTGGCCTTGAATCAGCACATTGGCA-C-----C
* * * *
840749 TTTAAGACCCATGTCGCTGGCCTTGAATCAGCACATTGGCA------TCTTTAAGTCCAATGTCA
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCG
840808 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
* * *
840835 GTTGTCTTTAGTACCAATGTTGCTGGCCTTGAATCAGCACATTGGCA------TCTTTAAGTCCA
1 ----T-TTAAGT-CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAGACCA
* * *
840894 ATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTGTC
60 ATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-----C
* * * *
840933 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACGTTGGCA------TCTTTAAGTCCAATATCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCG
* *
840992 CTAGCCTTGAATCAGCATATTGGCACCTTTGTC
66 CTGGCCTTGAATCAGCACATTGGCA-C-----C
** *
841025 TTTAAAACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA------TCTTTAAGTCCAATGTCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCG
*
841084 TTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
* * * *
841111 TTTGTCTTTAGCACCAATGTCGCTGGCCTTGAATTAGCACATTGGCA-C-----CTTTAAGTCCA
1 ----T-TTAAG-TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAGACCA
* *
841170 ATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTGTC
60 ATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-----C
* * * * *
841209 TTTTAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCA-C-----CTTTAAGTCCAATATCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCG
*
841268 CTGGCCTTGAATCAGCATATTGGCGCATTTGTCACC
66 CTGGCCTTGAATCAGC--A------CA-TTGGCACC
* *
841304 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCG
*
841369 CTGGCCTTGAATCAGCACATTGGCATC
66 CTGGCCTTGAATCAGCACATTGGCACC
841396 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTT-AGTACCAATGTC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAG-ACCAATGTC
*
841460 GCTGGCCTTGAATCAACACATTGGCACC
65 GCTGGCCTTGAATCAGCACATTGGCACC
* * *
841488 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCG
*
841553 CTGGCCTTGAATCAGCACATTGGCATC
66 CTGGCCTTGAATCAGCACATTGGCACC
* * * *
841580 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGGCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCG
*
841645 CTGGCCTTGAATCAGCACATTGGCATC
66 CTGGCCTTGAATCAGCACATTGGCACC
* *
841672 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGTACATTGGCACCTTTGTCTTT-AGTACTAATGTC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAG-ACCAATGTC
* *
841736 GCTGGCCTTGAATCGGCATATTGGCACC
65 GCTGGCCTTGAATCAGCACATTGGCACC
* * * *
841764 TTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGGCACTTTTGTCTTTAAGACCAATGTCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCG
*
841829 CTGGCCTTGAATCAGCACATTGGCATC
66 CTGGCCTTGAATCAGCACATTGGCACC
*
841856 TTTAAGTCCAATGTCGATGGCCTTGAATCAGCACATTGGCACCTTTGTCTTT-AGTACCAATGTC
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAG-ACCAATGTC
*
841920 GCTGGCCTTGAATCAGCACATTAGCACCTTCATC
65 GCTGGCCTTGAATCAGCACATTGGCA----C--C
* *** * * *
841954 TTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCAACTTGAAGTCCAATATCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCG
* * *
842019 CTAGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
66 CTGGCCTTGAATCAGCACATT---G-----G-CACC
* * *
842055 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTCTTCTCATCTTTAAGACTAATG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTT-T-GTCTTTAAGACCAATG
* *
842120 TCGCTGACCGTGAATCAGCACATT
63 TCGCTGGCCTTGAATCAGCACATT
842144 AACATTCTTT
Statistics
Matches: 1394, Mismatches: 121, Indels: 135
0.84 0.07 0.08
Matches are distributed among these distances:
86 2 0.00
90 2 0.00
91 15 0.01
92 1030 0.74
93 34 0.02
94 3 0.00
95 76 0.05
96 2 0.00
98 76 0.05
99 3 0.00
100 2 0.00
101 112 0.08
102 3 0.00
104 31 0.02
106 1 0.00
107 2 0.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (92 bp):
TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCG
CTGGCCTTGAATCAGCACATTGGCACC
Found at i:841641 original size:604 final size:603
Alignment explanation
Indices: 840463--842095 Score: 2639
Period size: 604 Copynumber: 2.7 Consensus size: 603
840453 GGCATCTTCT
* * * *
840463 TTTAAGTCCAATATCGCTAGGCCTTAAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTC
1 TTTAAGTCCAATGTCG-TTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTT-AGACCAATGTC
* *
840528 GCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCACTAGCCTTGAATCAGCATATT
64 GCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
*
840593 GGCACTTTTGTCTTTAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCA
129 GGCACTTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCA
* *
840658 ATATCGCTAGCCTTGAATCAGCATATTAGCGCCTTTGTCACCTTTAAGTCCAATATCGCTGGCCT
194 ATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCACCTTTAAGTCCAATATCGCTGGCCT
*
840723 TGAATCAGCATATTGGCACCTTTGTCTTTAAGACCCATGTCGCTGGCCTTGAATCAGCACATTGG
259 TGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG
* *
840788 CATCTTTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACCGTTGTCTTTAGTACCAAT
324 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAGTACCAAT
* *
840853 GTTGCTGGCCTTGAATCAGCACATTGGCATCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCAT
389 GTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCAT
* *
840918 ATTGGCACCTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACGTTGGCATCTTTAAGT
454 ATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTTAAGT
*
840983 CCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAAACCAATGTCGCTGGCCT
519 CCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAAACCAATGGCGCTGGCCT
841048 TGAATCAGCACATTGGCATC
584 TGAATCAGCACATTGGCATC
841068 TTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAGCACCAATGTCG
1 TTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAG-ACCAATGTCG
*
841133 CTGGCCTTGAATTAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
65 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
* *
841198 GCA-TCTTTGTCTTTTAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTTAAGTCCA
130 GCACT-TTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCA
*
841262 ATATCGCTGGCCTTGAATCAGCATATTGGCGCATTTGTCACCTTTAAGTCCAATATCGCTGGCCT
194 ATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCACCTTTAAGTCCAATATCGCTGGCCT
841327 TGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG
259 TGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG
841392 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAGTACCAAT
324 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAGTACCAAT
* *
841457 GTCGCTGGCCTTGAATCAACACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAT
389 GTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCAT
841522 ATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTTAAGT
454 ATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTTAAGT
* * *
841587 CCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGGCGCTGGCCT
519 CCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAAACCAATGGCGCTGGCCT
841652 TGAATCAGCACATTGGCATC
584 TGAATCAGCACATTGGCATC
* * *
841672 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGTACATTGGCACCTTTGTCTTTAGTACTAATGTCG
1 TTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAG-ACCAATGTCG
* * *
841737 CTGGCCTTGAATCGGCATATTGGCACCTTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTG
65 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
*
841802 GCACTTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTTAAGTCCAA
130 GCACTTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAA
* * * * *
841867 TGTCGATGGCCTTGAATCAGCACATTGGCACCTTTGT---CTTT-AGTACCAATGTCGCTGGCCT
195 TATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCACCTTTAAGT-CCAATATCGCTGGCCT
* * ** * *
841928 TGAATCAGCACATTAGCACCTTCATCTTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGG
259 TGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG
* * * * *
841993 CACCTTCAACTTGAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTT
324 CA---T---CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTG---TCTTT
842058 AAGT-CCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
380 -AGTACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
842096 TTCTTCTCAT
Statistics
Matches: 959, Mismatches: 55, Indels: 23
0.92 0.05 0.02
Matches are distributed among these distances:
600 3 0.00
601 80 0.08
603 3 0.00
604 773 0.81
605 16 0.02
607 43 0.04
610 38 0.04
611 3 0.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (603 bp):
TTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAGACCAATGTCGC
TGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG
CACTTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAAT
ATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCACCTTTAAGTCCAATATCGCTGGCCTTG
AATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAGTACCAATGT
CGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATAT
TGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTTAAGTCC
AATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAAACCAATGGCGCTGGCCTTG
AATCAGCACATTGGCATC
Found at i:841993 original size:98 final size:102
Alignment explanation
Indices: 841852--842301 Score: 402
Period size: 104 Copynumber: 4.4 Consensus size: 102
841842 AGCACATTGG
* *
841852 CATCTTTAAGTCCAATGTCGATGGCCTTGAATCAGCACATTGGCACCTT-T-GTCTTTAGTACCA
1 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTTTAGTACCA
841915 ATGTCGCTGGCCTTGAATCAGCACATTAGCA-CCT-T
66 ATGTCGCTGGCCTTGAATCAGCACATTAGCATCCTCT
* * *
841950 CATCTTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACC-T-TCAACTTGAAGT-CC
1 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTT-TAGTACC
* * * * * *
842012 AATATCGCTAGCCTTGAATCAGCATATTGGC-GCCTTTGT
65 AATGTCGCTGGCCTTGAATCAGCACATTAGCATCC--TCT
*
842051 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTCTTCTCATCTTTAAG-AC
1 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTTCTCATCTTT-AGTAC
* * * * * *
842115 TAATGTCGCTGACCGTGAATCAGCACATTAACATTCTTT
64 CAATGTCGCTGGCCTTGAATCAGCACATTAGCATCCTCT
* * * * * * **
842154 ACATCTCTAAGCCCAATATCACTGGTCC-TGAATCAGCATATTGGCGCCTTCGTCATCTTTAAAA
1 -CATCTTTAAGTCCAATGTCGCTGG-CCTTGAATCAGCACATTGGCACCTTC-TCATCTTTAGTA
* *
842218 CCTAATGTC-CTTGGCCTTGAATCAGCATATT-GACATTCTTCT
63 CC-AATGTCGC-TGGCCTTGAATCAGCACATTAG-CA-TCCTCT
* * * ** *
842260 CATCTTCAAGACTAATGTCGCTAACCGTGAATCAGCACATTG
1 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTG
842302 ACATTCTTTA
Statistics
Matches: 282, Mismatches: 49, Indels: 35
0.77 0.13 0.10
Matches are distributed among these distances:
97 2 0.01
98 79 0.28
99 3 0.01
100 1 0.00
101 45 0.16
102 1 0.00
103 8 0.03
104 82 0.29
105 58 0.21
106 3 0.01
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.32
Consensus pattern (102 bp):
CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTTTAGTACCA
ATGTCGCTGGCCTTGAATCAGCACATTAGCATCCTCT
Found at i:842271 original size:157 final size:156
Alignment explanation
Indices: 841911--842355 Score: 586
Period size: 157 Copynumber: 2.9 Consensus size: 156
841901 TGTCTTTAGT
* * * *
841911 ACCAATGTCGCTGGCCTTGAATCAGCACATT-AGCA--CCT-TCATCTTTAAGTCCAATGTCGCT
1 ACCAATGTCGCTGGCCTTGAATCAGCACATTGA-CATTCTTCTCATCTTCAAGACTAATGTCGCT
* * ** * * * *
841972 AGCCTTGAATCAGCACATTGGCA--CCTT-CAACT-TGAAGTCCAATATCGCTAG-CCTTGAATC
65 AACCGTGAATCAGCACATTAACATTCTTTACATCTCT-AAGCCCAATATCACTAGTCC-TGAATC
* *
842032 AGCATATTGGCGCCTTTGTCATCTTTAAG
128 AGCATATTGGCGCCTTCGTCATCTTTAAA
* * * *
842061 TCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTCTTCTCATCTTTAAGACTAATGTCGCTG
1 ACCAATGTCGCTGGCCTTGAATCAGCACATTGACATTCTTCTCATCTTCAAGACTAATGTCGCTA
*
842126 ACCGTGAATCAGCACATTAACATTCTTTACATCTCTAAGCCCAATATCACTGGTCCTGAATCAGC
66 ACCGTGAATCAGCACATTAACATTCTTTACATCTCTAAGCCCAATATCACTAGTCCTGAATCAGC
842191 ATATTGGCGCCTTCGTCATCTTTAAA
131 ATATTGGCGCCTTCGTCATCTTTAAA
*
842217 ACCTAATGTC-CTTGGCCTTGAATCAGCATATTGACATTCTTCTCATCTTCAAGACTAATGTCGC
1 ACC-AATGTCGC-TGGCCTTGAATCAGCACATTGACATTCTTCTCATCTTCAAGACTAATGTCGC
*
842281 TAACCGTGAATCAGCACATTGACATTCTTTACATCTCTAAGCCCAATATCACTAGTCCTGAATCA
64 TAACCGTGAATCAGCACATTAACATTCTTTACATCTCTAAGCCCAATATCACTAGTCCTGAATCA
842346 GCATATTGGC
129 GCATATTGGC
842356 ACCTGTATCA
Statistics
Matches: 260, Mismatches: 24, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
150 32 0.12
152 2 0.01
153 39 0.15
155 3 0.01
156 54 0.21
157 130 0.50
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (156 bp):
ACCAATGTCGCTGGCCTTGAATCAGCACATTGACATTCTTCTCATCTTCAAGACTAATGTCGCTA
ACCGTGAATCAGCACATTAACATTCTTTACATCTCTAAGCCCAATATCACTAGTCCTGAATCAGC
ATATTGGCGCCTTCGTCATCTTTAAA
Found at i:842302 original size:52 final size:52
Alignment explanation
Indices: 841852--842309 Score: 250
Period size: 52 Copynumber: 9.0 Consensus size: 52
841842 AGCACATTGG
* * * * * * *
841852 CATCTTTAAGTCCAATGTCGATGGCCTTGAATCAGCACATTGGCA-CCTT-T
1 CATCTTTAAGACTAATGTCGCTGACCGTGAATCAGCACATTGACATTCTTCT
* * * * *
841902 -GTCTTT-AGTACCAATGTCGCTGGCCTTGAATCAGCACATT-AGCA--CCT-T
1 CATCTTTAAG-ACTAATGTCGCTGACCGTGAATCAGCACATTGA-CATTCTTCT
* * * * *
841950 CATCTTTAAGTCCAATGTCGCT-AGCCTTGAATCAGCACATTGGCA--CCT-T
1 CATCTTTAAGACTAATGTCGCTGA-CCGTGAATCAGCACATTGACATTCTTCT
* * * * * * * * ** *
841999 CAACTTGAAGTCCAATATCGCT-AGCCTTGAATCAGCATATTGGC-GCCTTTGT
1 CATCTTTAAGACTAATGTCGCTGA-CCGTGAATCAGCACATTGACATTC-TTCT
* * * * *
842051 CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTCTTCT
1 CATCTTTAAGACTAATGTCGCTGACCGTGAATCAGCACATTGACATTCTTCT
*
842103 CATCTTTAAGACTAATGTCGCTGACCGTGAATCAGCACATTAACATTCTT-T
1 CATCTTTAAGACTAATGTCGCTGACCGTGAATCAGCACATTGACATTCTTCT
* * * * * * * * **
842154 ACATCTCTAAGCCCAATATCACTGGTCC-TGAATCAGCATATTGGC-GCCTTCGT
1 -CATCTTTAAGACTAATGTCGCT-GACCGTGAATCAGCACATTGACATTCTTC-T
* * * *
842207 CATCTTTAAAACCTAATGTC-CTTGGCCTTGAATCAGCATATTGACATTCTTCT
1 CATCTTTAAGA-CTAATGTCGC-TGACCGTGAATCAGCACATTGACATTCTTCT
* *
842260 CATCTTCAAGACTAATGTCGCTAACCGTGAATCAGCACATTGACATTCTT
1 CATCTTTAAGACTAATGTCGCTGACCGTGAATCAGCACATTGACATTCTT
842310 TACATCTCTA
Statistics
Matches: 333, Mismatches: 54, Indels: 40
0.78 0.13 0.09
Matches are distributed among these distances:
48 5 0.02
49 115 0.35
50 3 0.01
51 5 0.02
52 162 0.49
53 39 0.12
54 4 0.01
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.32
Consensus pattern (52 bp):
CATCTTTAAGACTAATGTCGCTGACCGTGAATCAGCACATTGACATTCTTCT
Found at i:842343 original size:52 final size:52
Alignment explanation
Indices: 842078--842353 Score: 206
Period size: 52 Copynumber: 5.3 Consensus size: 52
842068 TCGCTGGCCT
* * * *
842078 TGAATCAGCACATTGGCATTCTTCTCATCTTTAAGACTAATGTCGCT-GACCG
1 TGAATCAGCACATTGACATTCTT-TCATCTCTAAGCCTAATGTCACTAGACCG
* * * * *
842130 TGAATCAGCACATTAACATTCTTTACATCTCTAAGCCCAATATCACTGGTCC-
1 TGAATCAGCACATTGACATTCTTT-CATCTCTAAGCCTAATGTCACTAGACCG
* * * * * * * * *
842182 TGAATCAGCATATTGGCGCCTTC-GTCATCTTTAAAACCTAATGTC-CTTGGCCT
1 TGAATCAGCACATT-G-ACATTCTTTCATCTCT-AAGCCTAATGTCACTAGACCG
* * *
842235 TGAATCAGCATATTGACATTCTTCTCATCT-TCAAGACTAATGTCGCTA-ACCG
1 TGAATCAGCACATTGACATTCTT-TCATCTCT-AAGCCTAATGTCACTAGACCG
* * *
842287 TGAATCAGCACATTGACATTCTTTACATCTCTAAGCCCAATATCACTAGTCC-
1 TGAATCAGCACATTGACATTCTTT-CATCTCTAAGCCTAATGTCACTAGACCG
*
842339 TGAATCAGCATATTG
1 TGAATCAGCACATTG
842354 GCACCTGTAT
Statistics
Matches: 177, Mismatches: 35, Indels: 24
0.75 0.15 0.10
Matches are distributed among these distances:
51 6 0.03
52 129 0.73
53 38 0.21
54 4 0.02
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (52 bp):
TGAATCAGCACATTGACATTCTTTCATCTCTAAGCCTAATGTCACTAGACCG
Found at i:842979 original size:19 final size:19
Alignment explanation
Indices: 842967--843005 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
842957 GTATTGATGA
842967 ATAAGTGTTGTATCGATAC
1 ATAAGTGTTGTATCGATAC
842986 ATAAGTGTTGTATCGATAC
1 ATAAGTGTTGTATCGATAC
843005 A
1 A
843006 ATGTATCGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (19 bp):
ATAAGTGTTGTATCGATAC
Found at i:843012 original size:13 final size:13
Alignment explanation
Indices: 842994--843018 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
842984 ACATAAGTGT
842994 TGTATCGATACAA
1 TGTATCGATACAA
843007 TGTATCGATACA
1 TGTATCGATACA
843019 TAGCTACTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:846312 original size:22 final size:19
Alignment explanation
Indices: 846272--846313 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
846262 TTTTCTAAGT
846272 TTAAAATTTTTAAAATTCA
1 TTAAAATTTTTAAAATTCA
846291 TTAAATATTTTTATTAAATTCA
1 TTAAA-ATTTTTA--AAATTCA
846313 T
1 T
846314 GTTAAATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 7 0.35
22 8 0.40
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (19 bp):
TTAAAATTTTTAAAATTCA
Found at i:846497 original size:18 final size:19
Alignment explanation
Indices: 846476--846527 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
846466 TAAAATTTTG
846476 TTTATTTTTTAAGTTT-AA
1 TTTATTTTTTAAGTTTAAA
* *
846494 TTTAATTTTTAATTTTAAA
1 TTTATTTTTTAAGTTTAAA
846513 TTTGGATTTTTTAAG
1 TTT--ATTTTTTAAG
846528 CTAGTTTCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 14 0.52
19 5 0.19
21 8 0.30
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (19 bp):
TTTATTTTTTAAGTTTAAA
Found at i:856078 original size:79 final size:78
Alignment explanation
Indices: 855991--856293 Score: 306
Period size: 79 Copynumber: 3.9 Consensus size: 78
855981 GTTATTTCGA
* * *
855991 AAGGGATACTGC-AACCCTGTTTTTATTTCCAAAATATTAAATTTTTCATCTTGGGGATACTCCA
1 AAGGGATACT-CTAACCCTATTTTTATTTCCAAAATATTAAAATTTTCATCTCGGGGATACTCCA
856055 ACCCCATCAATTCT
65 ACCCCATCAATTCT
** * * **
856069 AAAAAGATACTCTAACCCTGTTTGTATTTCC-AAATATTAAAATTTTCATCTCAAGGATACTCCA
1 -AAGGGATACTCTAACCCTATTTTTATTTCCAAAATATTAAAATTTTCATCTCGGGGATACTCCA
* * * * *
856133 ACCTCGTTATTTTCG
65 ACCCCATCA-ATTCT
* * * * ** * * *
856148 AGGGGATATTCCAACCATATTTTTATTTCCAAAATATTAATTTTTTTATCTTGGGGATATTCCAA
1 AAGGGATACTCTAACCCTATTTTTATTTCCAAAATATTAAAATTTTCATCTCGGGGATACTCCAA
856213 CCCCATCAATTCT
66 CCCCATCAATTCT
* * *
856226 GAGGGAATACTCTAACCCCATTTTTATTTTCAAAATATTAAAATTTTCATCTCGGGGAT-CATCC
1 AAGGG-ATACTCTAACCCTATTTTTATTTCCAAAATATTAAAATTTTCATCTCGGGGATAC-TCC
856290 AACC
64 AACC
856294 TGTCGTAACG
Statistics
Matches: 175, Mismatches: 44, Indels: 10
0.76 0.19 0.04
Matches are distributed among these distances:
78 64 0.37
79 111 0.63
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (78 bp):
AAGGGATACTCTAACCCTATTTTTATTTCCAAAATATTAAAATTTTCATCTCGGGGATACTCCAA
CCCCATCAATTCT
Found at i:856224 original size:157 final size:158
Alignment explanation
Indices: 855954--856278 Score: 440
Period size: 157 Copynumber: 2.1 Consensus size: 158
855944 AAATATCGAT
* * * * * * *
855954 TTTTCATCTCGAGGATACTCTAACTTTGTTATTTCGAAAGGGATACTGCAACCCTGTTTTTATTT
1 TTTTCATCTCAAGGATACTCCAACCTCGTTATTTCGAAAGGGATACTCCAACCATATTTTTATTT
856019 CCAAAATATTAAATTTTTCATCTTGGGGATACTCCAACCCCATCAATTCTAAAA-AGATACTCTA
66 CCAAAATATTAAATTTTTCATCTTGGGGATACTCCAACCCCATCAATTCTAAAAGA-ATACTCTA
** *
856083 ACCCTGTTTGTA-TTTCCAAATATTAAAA
130 ACCCCATTTGTATTTTCAAAATATTAAAA
* *
856111 TTTTCATCTCAAGGATACTCCAACCTCGTTATTTTCG-AGGGGATATTCCAACCATATTTTTATT
1 TTTTCATCTCAAGGATACTCCAACCTCGTTA-TTTCGAAAGGGATACTCCAACCATATTTTTATT
* * * * **
856175 TCCAAAATATTAATTTTTTTATCTTGGGGATATTCCAACCCCATCAATTCTGAGGGAATACTCTA
65 TCCAAAATATTAAATTTTTCATCTTGGGGATACTCCAACCCCATCAATTCTAAAAGAATACTCTA
*
856240 ACCCCATTTTTATTTTCAAAATATTAAAA
130 ACCCCATTTGTATTTTCAAAATATTAAAA
856269 TTTTCATCTC
1 TTTTCATCTC
856279 GGGGATCATC
Statistics
Matches: 146, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
157 115 0.79
158 31 0.21
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.39
Consensus pattern (158 bp):
TTTTCATCTCAAGGATACTCCAACCTCGTTATTTCGAAAGGGATACTCCAACCATATTTTTATTT
CCAAAATATTAAATTTTTCATCTTGGGGATACTCCAACCCCATCAATTCTAAAAGAATACTCTAA
CCCCATTTGTATTTTCAAAATATTAAAA
Found at i:859461 original size:13 final size:13
Alignment explanation
Indices: 859443--859467 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
859433 CAAAGATCAG
859443 TGTATCGATACAA
1 TGTATCGATACAA
859456 TGTATCGATACA
1 TGTATCGATACA
859468 TTTGACTCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:866183 original size:13 final size:13
Alignment explanation
Indices: 866165--866189 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
866155 CAAAGATCAG
866165 TGTATCGATACAA
1 TGTATCGATACAA
866178 TGTATCGATACA
1 TGTATCGATACA
866190 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:866270 original size:13 final size:13
Alignment explanation
Indices: 866252--866276 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
866242 CAAAAAAATA
866252 TGTATCGATACAT
1 TGTATCGATACAT
866265 TGTATCGATACA
1 TGTATCGATACA
866277 ACATTTCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:866643 original size:79 final size:79
Alignment explanation
Indices: 866545--866771 Score: 196
Period size: 79 Copynumber: 2.9 Consensus size: 79
866535 CCATCAATTC
* * * *
866545 CGAGGGGATACTCCAACTTCGCTTTTATTTCT-AAAATATTAATTTTTTTATCTTG-GGAATACT
1 CGAGGGGATACTCCAACTTC-ATTTTATTTCTCAAAATATTAAATTTGTCATCTTGAGG-ATACT
866608 CCAACCCTGTTATTTT
64 CCAACCCTGTTATTTT
* * *
866624 CGAGGGGATA-TATCAACTTCATTTTTTTTTTCAAAATATTAAATTTGTCATCTTGAGGATACTC
1 CGAGGGGATACT-CCAACTTCATTTTATTTCTCAAAATATTAAATTTGTCATCTTGAGGATACTC
* * *
866688 CAA-CCTCATCAATTT
65 CAACCCT-GTTATTTT
** * * * * * *
866703 CGAGGGGATACTCCAACCCCACTCTTATTTC-CAAAATGCTAAAATTTTTCATC-TCAGGATACC
1 CGAGGGGATACTCCAACTTCA-TTTTATTTCTCAAAAT-ATTAAATTTGTCATCTTGAGGATACT
866766 CCAACC
64 CCAACC
866772 TCATATTCGG
Statistics
Matches: 119, Mismatches: 21, Indels: 15
0.77 0.14 0.10
Matches are distributed among these distances:
78 12 0.10
79 85 0.71
80 22 0.18
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (79 bp):
CGAGGGGATACTCCAACTTCATTTTATTTCTCAAAATATTAAATTTGTCATCTTGAGGATACTCC
AACCCTGTTATTTT
Found at i:868509 original size:940 final size:936
Alignment explanation
Indices: 866682--868559 Score: 2616
Period size: 940 Copynumber: 2.0 Consensus size: 936
866672 CATCTTGAGG
* *
866682 ATACTCCAACCTCATCAATTTCGAGGGGATACTCCAACCCCACTCTTATTTCCAAAATGCTAAAA
1 ATACTCCAACCCCATCAATTTCGAGAGGATACTCCAACCCCACTCTTATTTCCAAAATGCTAAAA
* * * *
866747 TTTTTCATCTCAGGATACCCCAACCTCATATTCGGAGGGGATACTCTAACCCTGTTTCTTTTTGA
66 TTTTTCATCTCAGGATACCCCAACCTCATATTAGGAAGGGATACTCTAACCCTATTTCTCTTTGA
* * * *
866812 ATTTTTTTTAAATTTCAAATGTTTCTCTAAGGCACCCTAGATCATTTTCTAAAACCTCATAAAAT
131 ATTTCTTTTAAATTCCAAATGTTTCTCTAAGGCACCCCAGATCATTTTCTAAAACCTCACAAAAT
* *
866877 CCAATCAAGTCTCAACATTGTTATCATGATTATACATCATTAATCGAAAACAATCATAAGACAAC
196 CCAATCAAGTCTCAAAATTGTTATCACGATTATACATCATTAATCGAAAACAATCATAAGACAAC
* * *
866942 TTCGATCGTCCCTCCTTTTTATGTATTTTTGTGTGTTATTTTTGTGAATTTGTTCGTTATTTTCT
261 TTCGATCGTCCCTCCTTTTTATGTATTTTTGTGTGTTATTTTTATGAATTTGTTCATTATTTTAT
* *
867007 GTTTTACTAATATGTTTCCTTTCATAGGAACCTTATGTATTAATGCTTTAAAAACCATCTTTAAA
326 GTTTTACTAACATGTTTCCTTTCATAGGAACCTTATGCATTAATGCTTTAAAAACCATCTTTAAA
867072 GATCACAAAATGATATTCCGTGTCGATATCTCTCCAGTGCACGACACAAAATATTTGATTTTTTC
391 GATCACAAAATGATATTCCGTGTCGATATCTCTCCAGTGCACGACACAAAATATTTGATTTTTTC
* *
867137 AAACCCAATCCGAAAACCTTTTCTATAAAAATTACTATGTTTTCCACTTCTCCGAGGTGCATATA
456 AAACCCAATCCGAAAACCTTTTCTATAAAAATCACTATGTTCTCCACTTCTCCGAGGTGCA-ATA
* * * *
867202 GGTGATATAAGTTTTTGTATTAAACCCATATTTGTAGTTTTTACAAAACTTTATGAATTATAGAG
520 GGTGATATAAGTTTTTGTATGAAACCCATATTTGTAGTTTTCACAAAACTTCATGAATTAGAGAG
867267 AATTATATCAAAATAATGATAAAAAATAGAACTGAGGAAATCGAGATTTAAGTGAGACATAGTTA
585 AATTATATCAAAATAATGATAAAAAATAGAACTGAGGAAATCGAGATTTAAGTGAGACATAGTTA
* ** * *
867332 GAAGGTATCAATTTCAGGTGTCCTGGGGGTACTAATCCTTCCCCATGCGTAACCAACTCCTAAAC
650 AAAGGTATCAATTTCAGGCATCCTGGGGGTACTAATCCTTCCCCACGCATAACCAACTCCTAAAC
* * * * *
867397 CCAAACACAAATCTCCAAATTACGTAGACCGTGAGATCGATGTTTCGAGTTTTGTAACTTAAGAC
715 CCAAACACAAATATCCAAATTACGTAGACCGTGAGATCAATGTTTCGAATTTCGTAACTCAAGAC
* *
867462 ATAGGTTTCAATAGGCATCTGATCATGCCTAGCCCGAAATGATTAGTGGCGACTCCAACTTCATG
780 ATAGGTTTCAATAGGCATCTGATCATGCCTAGCCCGAAATGATCAGTGGCGACTCCAACTTCATA
* *
867527 GTCATTTCGTGGTGAGCATTTGAGACTAATAGGATAAGCAATTCGTCCGATAGTCTTCCACCCCT
845 GTCATTTCGTGGTGACCATTCGAGACTAATAGGATAAGCAATTCGTCCGATAGTCTTCCACCCCT
*
867592 TCTTATTGACCATCATCTTTTATTTTA
910 TCCTATTGACCATCATCTTTTATTTTA
**** *
867619 ATACTCCAACCCCATCAA-TTCTGAGAGGATACTCCAACCTTGTTTTTATTTCCAAAATGCT-AA
1 ATACTCCAACCCCATCAATTTC-GAGAGGATACTCCAACCCCACTCTTATTTCCAAAATGCTAAA
* * *
867682 ATTTTTCGTCTCGGGATACCCCAA-CTCCATTTTAGGAAGGGATACTCTAACCCTATTTCTCTTT
65 ATTTTTCATCTCAGGATACCCCAACCT-CATATTAGGAAGGGATACTCTAACCCTATTTCTCTTT
* * *
867746 GAATTTCTTTTAAATTCCAAATGTTTCTTTAGGGCATCCCCAGATCATTTTCTAAAACCTCACAG
129 GAATTTCTTTTAAATTCCAAATGTTTCTCTAAGGCA-CCCCAGATCATTTTCTAAAACCTCACAA
*
867811 AATCCAATCAAGTCTCAAAATTGTTATCACGATTATACATCATTAATC-AGAAACAATCATGAGA
193 AATCCAATCAAGTCTCAAAATTGTTATCACGATTATACATCATTAATCGA-AAACAATCATAAGA
*
867875 CACACTTCGATCGTCCTTCCTTTTTATGTATTTTTGTGTGTTATTTTGTATGAATTTGTTCATTA
257 CA-ACTTCGATCGTCCCTCCTTTTTATGTATTTTTGTGTGTTATTTT-TATGAATTTGTTCATTA
** *
867940 TTTTATGTTTTACTAACATGTTTCCTTTTGTAAGG-ACCTTATGCATTCATGCTTTAAAAACCA-
320 TTTTATGTTTTACTAACATGTTTCCTTTCAT-AGGAACCTTATGCATTAATGCTTTAAAAACCAT
* * * ** * * *
868003 CTTTTAAAGATCACACAATGATATTCTGTGTCTATATCTCTCCAGTGCTTGACACGAAATTTTTT
384 C-TTTAAAGATCACAAAATGATATTCCGTGTCGATATCTCTCCAGTGCACGACACAAAATATTTG
* * * * **
868068 A-TTTTTCGAAACCCAATCTGGAAACTTTTTCTATAAAAAATCACTGTGTTC-CTCA-TTCTTTT
448 ATTTTTTC-AAACCCAATCCGAAAACCTTTTCTAT-AAAAATCACTATGTTCTC-CACTTC-TCC
*
868130 GAGGTGC-ATAGGTGGTATAAGTTTTTGTATGAAACCCATATTTGTAGTTTTCACAAAACTTCAT
509 GAGGTGCAATAGGTGATATAAGTTTTTGTATGAAACCCATATTTGTAGTTTTCACAAAACTTCAT
* *
868194 GCATTAGAGAAAGAATTATATCAAAATAATGATAAAAAATGGAA-TCGAGGAAATC-ATGATTTA
574 GAATTAGAG--AGAATTATATCAAAATAATGATAAAAAATAGAACT-GAGGAAATCGA-GATTTA
* * ** *
868257 AGTGAGACATAGTTAAAAGGTA-CTGATTTCGGGCATTGTGGGGGTACTAATCCTTCCCCACGTA
635 AGTGAGACATAGTTAAAAGGTATC-AATTTCAGGCATCCTGGGGGTACTAATCCTTCCCCACGCA
* * * * *
868321 TAACCAATTCTTGAACCCAAACACAAATATCTAAATTACGTAGACTACG-G-GATTAATGTTTCG
699 TAACCAACTCCTAAACCCAAACACAAATATCCAAATTACGTAGAC--CGTGAGATCAATGTTTCG
* * ** * *
868384 AATTTCGTGACTCGAGACATAGGTTTCAATAGGTGTCTGATCATGTCTAGCCTGAAATGATCAGT
762 AATTTCGTAACTCAAGACATAGGTTTCAATAGGCATCTGATCATGCCTAGCCCGAAATGATCAGT
* * * * *
868449 GGCGACTCCAAGTTTATAGTCATTTCGTGGTGACCATTCGAGACTAGTAGGGTGAGCAATTCGTC
827 GGCGACTCCAACTTCATAGTCATTTCGTGGTGACCATTCGAGACTAATAGGATAAGCAATTCGTC
* * *
868514 TGATAGTCTTTCACCTCTTCCTATTGACCATCATCTTTTATTTTA
892 CGATAGTCTTCCACCCCTTCCTATTGACCATCATCTTTTATTTTA
868559 A
1 A
868560 GTCGAGCGTG
Statistics
Matches: 827, Mismatches: 95, Indels: 35
0.86 0.10 0.04
Matches are distributed among these distances:
935 2 0.00
936 92 0.11
937 136 0.16
938 110 0.13
939 154 0.19
940 330 0.40
941 1 0.00
942 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (936 bp):
ATACTCCAACCCCATCAATTTCGAGAGGATACTCCAACCCCACTCTTATTTCCAAAATGCTAAAA
TTTTTCATCTCAGGATACCCCAACCTCATATTAGGAAGGGATACTCTAACCCTATTTCTCTTTGA
ATTTCTTTTAAATTCCAAATGTTTCTCTAAGGCACCCCAGATCATTTTCTAAAACCTCACAAAAT
CCAATCAAGTCTCAAAATTGTTATCACGATTATACATCATTAATCGAAAACAATCATAAGACAAC
TTCGATCGTCCCTCCTTTTTATGTATTTTTGTGTGTTATTTTTATGAATTTGTTCATTATTTTAT
GTTTTACTAACATGTTTCCTTTCATAGGAACCTTATGCATTAATGCTTTAAAAACCATCTTTAAA
GATCACAAAATGATATTCCGTGTCGATATCTCTCCAGTGCACGACACAAAATATTTGATTTTTTC
AAACCCAATCCGAAAACCTTTTCTATAAAAATCACTATGTTCTCCACTTCTCCGAGGTGCAATAG
GTGATATAAGTTTTTGTATGAAACCCATATTTGTAGTTTTCACAAAACTTCATGAATTAGAGAGA
ATTATATCAAAATAATGATAAAAAATAGAACTGAGGAAATCGAGATTTAAGTGAGACATAGTTAA
AAGGTATCAATTTCAGGCATCCTGGGGGTACTAATCCTTCCCCACGCATAACCAACTCCTAAACC
CAAACACAAATATCCAAATTACGTAGACCGTGAGATCAATGTTTCGAATTTCGTAACTCAAGACA
TAGGTTTCAATAGGCATCTGATCATGCCTAGCCCGAAATGATCAGTGGCGACTCCAACTTCATAG
TCATTTCGTGGTGACCATTCGAGACTAATAGGATAAGCAATTCGTCCGATAGTCTTCCACCCCTT
CCTATTGACCATCATCTTTTATTTTA
Found at i:868766 original size:28 final size:27
Alignment explanation
Indices: 868709--868766 Score: 73
Period size: 31 Copynumber: 2.0 Consensus size: 27
868699 AACTTTATTT
868709 AATTTAACTTTTTTCAATTAAGTCTTCCA
1 AATTTAACTTTTTTCAATTAAG--TTCCA
868738 AATTTAATCTTTTATTCAATTAAG-TCCA
1 AATTTAA-CTTTT-TTCAATTAAGTTCCA
868766 A
1 A
868767 CTTAATTGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
28 5 0.19
29 7 0.26
30 5 0.19
31 10 0.37
ACGTcount: A:0.34, C:0.16, G:0.03, T:0.47
Consensus pattern (27 bp):
AATTTAACTTTTTTCAATTAAGTTCCA
Found at i:869536 original size:20 final size:19
Alignment explanation
Indices: 869513--869563 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 19
869503 CATATCTAGA
869513 TGTATCGATACAGTATGTT-T
1 TGTATCGATACAG--TGTTAT
869533 TGTATCGATAC-GTGTTCAT
1 TGTATCGATACAGTGTT-AT
869552 TGTATCGATACA
1 TGTATCGATACA
869564 TGGGACAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 4 0.14
19 13 0.46
20 11 0.39
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (19 bp):
TGTATCGATACAGTGTTAT
Found at i:869591 original size:33 final size:33
Alignment explanation
Indices: 869549--869617 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
869539 GATACGTGTT
*
869549 CATTGTATCGATACATG-GGACAATGTATCGATA
1 CATTGTATCGATACATGAAGA-AATGTATCGATA
* *
869582 CATTGTATCGATAGATGAAGAATTGTATCGATA
1 CATTGTATCGATACATGAAGAAATGTATCGATA
869615 CAT
1 CAT
869618 CATGCCCAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
33 30 0.94
34 2 0.06
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (33 bp):
CATTGTATCGATACATGAAGAAATGTATCGATA
Found at i:874372 original size:16 final size:16
Alignment explanation
Indices: 874348--874378 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
874338 AAAGGCTTTC
*
874348 AAAATTTTTAATAGAA
1 AAAAGTTTTAATAGAA
874364 AAAAGTTTTAATAGA
1 AAAAGTTTTAATAGA
874379 GGAAATATTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35
Consensus pattern (16 bp):
AAAAGTTTTAATAGAA
Found at i:875778 original size:13 final size:13
Alignment explanation
Indices: 875760--875799 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
875750 ACAAGGTTCT
875760 TTGTATCGATACA
1 TTGTATCGATACA
875773 TTGTATCGATACA
1 TTGTATCGATACA
*
875786 ATGTATCGATACA
1 TTGTATCGATACA
875799 T
1 T
875800 GGGTTACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:877881 original size:19 final size:20
Alignment explanation
Indices: 877859--877910 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
877849 TGTATCGATA
*
877859 GTATCGATACATGTTC-ATT
1 GTATCGATACATGCTCAATT
* *
877878 GTATCAATACATACTCAATT
1 GTATCGATACATGCTCAATT
*
877898 GTATTGATACATG
1 GTATCGATACATG
877911 AAAGTGGCAG
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.38
Consensus pattern (20 bp):
GTATCGATACATGCTCAATT
Found at i:883142 original size:20 final size:20
Alignment explanation
Indices: 883117--883185 Score: 57
Period size: 23 Copynumber: 3.1 Consensus size: 20
883107 AAATGAGAAT
883117 ATTGAAAAGATGATTTTCGA
1 ATTGAAAAGATGATTTTCGA
** *
883137 ATTGAATGTGATGAGATCTTCAGAA
1 ATTGAA-AAGAT--GATTTTC-G-A
883162 TATTGAAAAGATGATTTTCGA
1 -ATTGAAAAGATGATTTTCGA
883183 ATT
1 ATT
883186 CAATGTGATG
Statistics
Matches: 37, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
20 9 0.24
21 4 0.11
22 1 0.03
23 12 0.32
24 1 0.03
25 4 0.11
26 6 0.16
ACGTcount: A:0.38, C:0.06, G:0.20, T:0.36
Consensus pattern (20 bp):
ATTGAAAAGATGATTTTCGA
Found at i:883162 original size:46 final size:46
Alignment explanation
Indices: 883112--883203 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
883102 AGAGAAAATG
*
883112 AGAATATTGAAAAGATGATTTTCGAATTGAATGTGATGAGATCTTC
1 AGAATATTGAAAAGATGATTTTCGAATTCAATGTGATGAGATCTTC
883158 AGAATATTGAAAAGATGATTTTCGAATTCAATGTGATGAGATCTTC
1 AGAATATTGAAAAGATGATTTTCGAATTCAATGTGATGAGATCTTC
883204 GAGGTTGAGC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.35
Consensus pattern (46 bp):
AGAATATTGAAAAGATGATTTTCGAATTCAATGTGATGAGATCTTC
Found at i:883205 original size:23 final size:22
Alignment explanation
Indices: 883132--883205 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 22
883122 AAAGATGATT
883132 TTCGAATTGAATGTGATGAGATC
1 TTCGAATT-AATGTGATGAGATC
* ** * *
883155 TTCAGAA-TATTGAAAAGATGATT
1 TTC-GAATTAATGTGATGA-GATC
883178 TTCGAATTCAATGTGATGAGATC
1 TTCGAATT-AATGTGATGAGATC
883201 TTCGA
1 TTCGA
883206 GGTTGAGCAG
Statistics
Matches: 37, Mismatches: 10, Indels: 8
0.67 0.18 0.15
Matches are distributed among these distances:
22 9 0.24
23 19 0.51
24 9 0.24
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.35
Consensus pattern (22 bp):
TTCGAATTAATGTGATGAGATC
Found at i:883780 original size:20 final size:20
Alignment explanation
Indices: 883755--883793 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
883745 ACATTGTATG
*
883755 TCCCATAATAAATCACATTT
1 TCCCATAAAAAATCACATTT
883775 TCCCATAAAAAATCACATT
1 TCCCATAAAAAATCACATT
883794 CTTTTATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.31
Consensus pattern (20 bp):
TCCCATAAAAAATCACATTT
Found at i:884411 original size:33 final size:34
Alignment explanation
Indices: 884374--884441 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
884364 AAAAAAAGAT
884374 AAAAATTAAAAAATA-TATATTTTTAATATTTAA
1 AAAAATTAAAAAATATTATATTTTTAATATTTAA
* *
884407 AAAAATTAAAAATTATTTTATTTTTAATATTTAA
1 AAAAATTAAAAAATATTATATTTTTAATATTTAA
884441 A
1 A
884442 GTAAAGTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 14 0.44
34 18 0.56
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (34 bp):
AAAAATTAAAAAATATTATATTTTTAATATTTAA
Found at i:885475 original size:21 final size:21
Alignment explanation
Indices: 885428--885476 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
885418 AATGATAGAT
* * *
885428 AAATTAATTATTGTAATGGTA
1 AAATTAAGTATTATAATGATA
* *
885449 AGATTAAGTATTATAATTATA
1 AAATTAAGTATTATAATGATA
885470 AAATTAA
1 AAATTAA
885477 AATTAGTAAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (21 bp):
AAATTAAGTATTATAATGATA
Found at i:885859 original size:26 final size:26
Alignment explanation
Indices: 885805--885862 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
885795 ATATTTACTA
* *
885805 TATTATTATATGAAATCAAATATATT
1 TATTATTATATAAAATAAAATATATT
*
885831 TATTATTATATAATAATAAAATTTATT
1 TATTATTATATAA-AATAAAATATATT
885858 ATATT
1 -TATT
885863 TATTTTTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 12 0.44
27 11 0.41
28 4 0.15
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (26 bp):
TATTATTATATAAAATAAAATATATT
Found at i:895981 original size:155 final size:156
Alignment explanation
Indices: 895615--895996 Score: 409
Period size: 155 Copynumber: 2.5 Consensus size: 156
895605 ATTATTTTTG
* * * * *
895615 AGTCTTATAGGATTATTTGATACTTTTATGTCGAAAGTATATCCT-AAGAGCATTTTGATAATTT
1 AGTCTTTTAGGATTACTAGATACTTTAATATC-AAAGTATATCCTAAAGAGCATTTTGATAA-TT
* * ** *
895679 TA-CATTAGAACTAAGTTTTTTGTGATTACTTAGATACTTTCATGTCGAAAGATACACATTAGAG
64 TAGCATTAGAACAAAATCCTATGTGATTACTTAGATACTTTCATGTCGAAAGATACACATTAGAG
* * *
895743 ATAGGTTCGTTATTTTAGATTGTTTTCA
129 ATAGGTTCGTTATTTTAGACTATTTACA
* * * *
895771 AGTC-TTTAGGGTTACTAGGATACTGTAATATCAAAGGTATATCCTAAA-AGTATTTTCATAATT
1 AGTCTTTTAGGATTACTA-GATACTTTAATATCAAA-GTATATCCTAAAGAGCATTTTGATAATT
* * * * *
895834 TAGCATTAGAACAAAATCCTATGTGATTACTTAGATACTTTTATGTCG-AAGGTATATATTAGGG
64 TAGCATTAGAACAAAATCCTATGTGATTACTTAGATACTTTCATGTCGAAAGATACACATTAGAG
* * *
895898 ATATGTTTGTTA-TTTGGACTATTTACA
129 ATAGGTTCGTTATTTTAGACTATTTACA
* *
895925 AGTCTTTTAGGATTACTGAGATACTTTCATATCAAAGATATAACCTAAAGA-CATTTTGATAATT
1 AGTCTTTTAGGATTACT-AGATACTTTAATATCAAAG-TATATCCTAAAGAGCATTTTGATAATT
*
895989 TGGCATTA
64 TAGCATTA
895997 AAACGACGTC
Statistics
Matches: 186, Mismatches: 32, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
154 16 0.09
155 92 0.49
156 76 0.41
157 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.41
Consensus pattern (156 bp):
AGTCTTTTAGGATTACTAGATACTTTAATATCAAAGTATATCCTAAAGAGCATTTTGATAATTTA
GCATTAGAACAAAATCCTATGTGATTACTTAGATACTTTCATGTCGAAAGATACACATTAGAGAT
AGGTTCGTTATTTTAGACTATTTACA
Found at i:897576 original size:15 final size:15
Alignment explanation
Indices: 897556--897590 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
897546 ATGCTTCCTA
897556 AAATGATATTGGTGC
1 AAATGATATTGGTGC
897571 AAATGATATTGGTGC
1 AAATGATATTGGTGC
897586 AAATG
1 AAATG
897591 TGAACAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (15 bp):
AAATGATATTGGTGC
Found at i:901081 original size:5 final size:5
Alignment explanation
Indices: 901073--901098 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
901063 TATTTTTTTC
901073 TTTAT TTTAT TTTAT TTTAT TTTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT T
901099 AAATTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:901107 original size:22 final size:22
Alignment explanation
Indices: 901056--901127 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
901046 TTAATCTCGT
901056 AATTTTTTATTTT-TTTCT-TTA
1 AATTTTTTATTTTATTT-TATTA
**
901077 TTTTATTTTATTTTATTTTATTA
1 AATT-TTTTATTTTATTTTATTA
* *
901100 AATTTTTTAGTCTA-TTTATTA
1 AATTTTTTATTTTATTTTATTA
901121 TAATTTT
1 -AATTTT
901128 AATGTTGCAT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
21 9 0.22
22 24 0.59
23 8 0.20
ACGTcount: A:0.24, C:0.03, G:0.01, T:0.72
Consensus pattern (22 bp):
AATTTTTTATTTTATTTTATTA
Found at i:902514 original size:16 final size:16
Alignment explanation
Indices: 902493--902545 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
902483 TGATTTCAAG
902493 TTTTTTCGAGTTTGAA
1 TTTTTTCGAGTTTGAA
*
902509 TTTTTTC-AGTTTTAGA
1 TTTTTTCGAGTTTGA-A
902525 TTTTCTT-GAGTTTG-A
1 TTTT-TTCGAGTTTGAA
902540 TTTTTT
1 TTTTTT
902546 TTCAGATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
14 2 0.06
15 11 0.34
16 12 0.38
17 7 0.22
ACGTcount: A:0.15, C:0.06, G:0.15, T:0.64
Consensus pattern (16 bp):
TTTTTTCGAGTTTGAA
Found at i:904192 original size:21 final size:21
Alignment explanation
Indices: 904166--904211 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
904156 TAACAAGAAA
* *
904166 AAAT-AATATATAATATATAAT
1 AAATAAATAAATAA-ATATAAG
904187 AAATAAATAAATAAATATAAG
1 AAATAAATAAATAAATATAAG
904208 AAAT
1 AAAT
904212 TCGGTCAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (21 bp):
AAATAAATAAATAAATATAAG
Found at i:905063 original size:2 final size:2
Alignment explanation
Indices: 905056--905082 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
905046 ACCTATCTCT
905056 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
905083 TGATCTCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:907111 original size:3 final size:3
Alignment explanation
Indices: 907103--907132 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
907093 CTTTTTACAA
907103 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
907133 TTAAAATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:907145 original size:12 final size:13
Alignment explanation
Indices: 907109--907155 Score: 60
Period size: 12 Copynumber: 3.5 Consensus size: 13
907099 ACAAAATAAT
*
907109 AATAATAATAATAA
1 AATAATAAT-TTAA
907123 TAATAATAATTTAA
1 -AATAATAATTTAA
907137 AATAA-AATTTAA
1 AATAATAATTTAA
907149 AATAATA
1 AATAATA
907156 TCATCAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 12 0.40
13 6 0.20
14 3 0.10
15 9 0.30
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
AATAATAATTTAA
Found at i:910475 original size:24 final size:24
Alignment explanation
Indices: 910434--910484 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
910424 AAATAAATTT
* * *
910434 AAAATTAAAAATATAAAATATATA
1 AAAATTAAAAATAGAAAAGACATA
*
910458 AAAATTAAAATTAGAAAAGACATA
1 AAAATTAAAAATAGAAAAGACATA
910482 AAA
1 AAA
910485 TGTATTATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.24
Consensus pattern (24 bp):
AAAATTAAAAATAGAAAAGACATA
Found at i:912816 original size:152 final size:154
Alignment explanation
Indices: 912517--912849 Score: 377
Period size: 152 Copynumber: 2.2 Consensus size: 154
912507 ATACCCTTAG
* * *
912517 AGTATATCTTCGATATGAAAGTATCTCGATAACCCTAAAAGATTTAAAAATGATCATAAAAGAGA
1 AGTATACCTTCGACATGAAAGTATCTCAATAACCCTAAAAGATTTAAAAATGATCAT--AAGAGA
* * * *
912582 TAAAACTATCCTATATGCACACTTTTGGCATAAAAGCATCCTAATGACAACTTAAGACTTAGTTC
64 TAAAACTATCCTAAATGCACACCTTTGGCATAAAAACATCCTAATGACAACCTAAGACTTAGTTC
*
912647 TACGAAAACTACAAAAATGACCT-TGA
129 TACGAAAACTACAAAAATG-CCTCTAA
* * * *
912673 AGTATACCTTTGACATGAAAGTATCTCAATAACTCTAAAGGATTTAAAAATGATCAT-GGA-AT-
1 AGTATACCTTCGACATGAAAGTATCTCAATAACCCTAAAAGATTTAAAAATGATCATAAGAGATA
* * * * *
912735 GAACTTATCCTAAATGCACACCTTTGGTATAAAAACATCCTAATGACAACCTAGGATTTGGTTCT
66 AAAC-TATCCTAAATGCACACCTTTGGCATAAAAACATCCTAATGACAACCTAAGACTTAGTTCT
* * * ** *
912800 AGGAAGATTATGAAAATGTCTCTAA
130 ACGAAAACTACAAAAATGCCTCTAA
* *
912825 AGTATACCTTCAACATAAAAGTATC
1 AGTATACCTTCGACATGAAAGTATC
912850 CTAGTAACCT
Statistics
Matches: 149, Mismatches: 26, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
151 5 0.03
152 91 0.61
153 2 0.01
156 51 0.34
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (154 bp):
AGTATACCTTCGACATGAAAGTATCTCAATAACCCTAAAAGATTTAAAAATGATCATAAGAGATA
AAACTATCCTAAATGCACACCTTTGGCATAAAAACATCCTAATGACAACCTAAGACTTAGTTCTA
CGAAAACTACAAAAATGCCTCTAA
Found at i:913399 original size:164 final size:165
Alignment explanation
Indices: 913097--913396 Score: 410
Period size: 164 Copynumber: 1.8 Consensus size: 165
913087 CACTTAACGG
* * *
913097 AGGATACGAAAAGTCTTTAAAAATTTTATACCCCTACGCAAGGCTATAGGAATAATAAAAATCTT
1 AGGATACGAAAAGTCTTGAAAAATTTTATACCCCTACGCAAGACCATAGGAATAATAAAAATCTT
* * * * * *
913162 TAAAAATTATTAAAATAATGATTATACCTCTAAAAGCAAAATTTTACTATTTTATTCTTAGACTT
66 TAAAAATGACTAAAATAATGATTATACCTCTAAAAGCAAAATTTTACTATTTAATCCCTAAACTT
*
913227 TTAAAAATTTTATTTCGTATCCAATGAAAAACCAA
131 TAAAAAATTTTATTTCGTATCCAATGAAAAACCAA
* * * *
913262 AGGATATG-AAAGTCTTGAAAATTTTTATACCCCTACG-AACGACCGTAGGAATAATAAAAATTT
1 AGGATACGAAAAGTCTTGAAAAATTTTATACCCCTACGCAA-GACCATAGGAATAATAAAAATCT
* *
913325 TTAAAAATGACTAAAATTATGATTTTACCTCTAAAA-CTAAAA-TTTACTATTTAATCCCTAAAC
65 TTAAAAATGACTAAAATAATGATTATACCTCTAAAAGC-AAAATTTTACTATTTAATCCCTAAAC
913388 TTTAAAAAA
129 TTTAAAAAA
913397 ATTCATTTTT
Statistics
Matches: 117, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
163 28 0.24
164 82 0.70
165 7 0.06
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.34
Consensus pattern (165 bp):
AGGATACGAAAAGTCTTGAAAAATTTTATACCCCTACGCAAGACCATAGGAATAATAAAAATCTT
TAAAAATGACTAAAATAATGATTATACCTCTAAAAGCAAAATTTTACTATTTAATCCCTAAACTT
TAAAAAATTTTATTTCGTATCCAATGAAAAACCAA
Found at i:914720 original size:14 final size:14
Alignment explanation
Indices: 914697--914730 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
914687 ACAAACTCAT
914697 AAAAATTTAT-GAG
1 AAAAATTTATCGAG
914710 AAAACATTTATCGAG
1 AAAA-ATTTATCGAG
914725 AAAAAT
1 AAAAAT
914731 GGTTATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.21
14 8 0.42
15 7 0.37
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.26
Consensus pattern (14 bp):
AAAAATTTATCGAG
Found at i:915024 original size:154 final size:154
Alignment explanation
Indices: 914741--915140 Score: 495
Period size: 156 Copynumber: 2.6 Consensus size: 154
914731 GGTTATATAT
* * *
914741 AAAAAA-TGCAAACTCAGAAAATAAATTGAATTTTTTAAAAACTATATTAATATGAATTAAACAA
1 AAAAAATTG-AAACTCATAAAATAAATTAAATTTTTT-AAAACTAT-TTAATATGAATTAAATAA
* * * *
914805 TAATATTTGAAAAATTTTGAAGATTATAAACTTAAAAAAATATTACCGAAGAAATTTATGAAGT-
63 TAATATTTGAAGAATTTTAAAAATTATAAACTTAAAAAAATACTACCGAAGAAATTTATGAAGTA
**
914869 AAAAAATTTC-ATATTTTGAAAACAAA
128 AAAAAAACTCAATATTTTGAAAACAAA
* *
914895 ACAAAAATTGAAACTCATAAAATAAATTAAAATTTTTAAAACTGATTTAATATAAATTAAATAAT
1 A-AAAAATTGAAACTCATAAAATAAATTAAATTTTTTAAAACT-ATTTAATATGAATTAAATAAT
* *
914960 AATATTTGAAGAATTTTAAAAATTATAAACTTAGAAAAAA-CCTACC-AGAGAAATTTATGGAGT
64 AATATTTGAAGAATTTTAAAAATTATAAACTTA-AAAAAATACTACCGA-AGAAATTTATGAAGT
* *
915023 AAAAAAAACTCAATATTTTGAAAATAAG
127 AAAAAAAACTCAATATTTTGAAAACAAA
* * * * *
915051 AAAAATTCTAAAACTCATAGAATAAATTAAATTTTTTAAAACTAACTTAACATGAATTAAATAAT
1 AAAAAAT-TGAAACTCATAAAATAAATTAAATTTTTTAAAACT-ATTTAATATGAATTAAATAAT
*
915116 AATATTTAAAGAATTTTAAAAATTA
64 AATATTTGAAGAATTTTAAAAATTA
915141 AGAACAGAGA
Statistics
Matches: 214, Mismatches: 24, Indels: 14
0.85 0.10 0.06
Matches are distributed among these distances:
153 1 0.00
154 72 0.34
155 50 0.23
156 91 0.43
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.32
Consensus pattern (154 bp):
AAAAAATTGAAACTCATAAAATAAATTAAATTTTTTAAAACTATTTAATATGAATTAAATAATAA
TATTTGAAGAATTTTAAAAATTATAAACTTAAAAAAATACTACCGAAGAAATTTATGAAGTAAAA
AAAACTCAATATTTTGAAAACAAA
Found at i:917596 original size:30 final size:32
Alignment explanation
Indices: 917529--917608 Score: 80
Period size: 30 Copynumber: 2.6 Consensus size: 32
917519 TGCTCCAAAG
*
917529 TGCACTGCTCT-AGAAAGCACAACTCCACGGCA
1 TGCACTGCTCTAAG-GAGCACAACTCCACGGCA
*
917561 T--ACTGCTCTAAGGAGCACAACTTCA-GG-A
1 TGCACTGCTCTAAGGAGCACAACTCCACGGCA
* *
917589 TGCACTGCTCCAAGGTGCAC
1 TGCACTGCTCTAAGGAGCAC
917609 TGCTGGCAGC
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
28 2 0.05
29 2 0.05
30 34 0.83
31 2 0.05
32 1 0.02
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (32 bp):
TGCACTGCTCTAAGGAGCACAACTCCACGGCA
Found at i:917696 original size:26 final size:26
Alignment explanation
Indices: 917667--917726 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
917657 GCTGCATTGT
* *
917667 CAGCAAGCTCTATCAAGCTATGCTGC
1 CAGCAAACTCTACCAAGCTATGCTGC
* *
917693 CAGCAAACTCTGCCAAGCTATGTTGC
1 CAGCAAACTCTACCAAGCTATGCTGC
*
917719 TAGCAAAC
1 CAGCAAAC
917727 ATGTTCTACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (26 bp):
CAGCAAACTCTACCAAGCTATGCTGC
Found at i:920848 original size:13 final size:13
Alignment explanation
Indices: 920830--920854 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
920820 CATAAAGTGT
920830 TGTATCGATACAA
1 TGTATCGATACAA
920843 TGTATCGATACA
1 TGTATCGATACA
920855 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:920852 original size:33 final size:33
Alignment explanation
Indices: 920810--920876 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
920800 TTCAACGATT
920810 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
920843 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
920876 T
1 T
920877 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:920935 original size:13 final size:13
Alignment explanation
Indices: 920917--920941 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
920907 ATCACTTAAA
920917 TGTATCGATACAT
1 TGTATCGATACAT
920930 TGTATCGATACA
1 TGTATCGATACA
920942 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:922153 original size:20 final size:20
Alignment explanation
Indices: 922130--922203 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
922120 ACAATTCAAA
922130 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
922150 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
922171 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
922191 GTATCGATACATG
1 GTATCGATACATG
922204 AAAAAGATGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:922174 original size:21 final size:21
Alignment explanation
Indices: 922148--922223 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
922138 ACATGTTGCA
922148 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
922169 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
922189 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
922210 ATGTATCGATACAT
1 ATGTATCGATACAT
922224 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:922181 original size:41 final size:41
Alignment explanation
Indices: 922130--922223 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
922120 ACAATTCAAA
922130 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
922171 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
922212 GTATCGATACAT
1 GTATCGATACAT
922224 TTCTTGGCAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
Found at i:922280 original size:13 final size:13
Alignment explanation
Indices: 922262--922287 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
922252 TACAGCAAGT
922262 ATGTATCGATACA
1 ATGTATCGATACA
922275 ATGTATCGATACA
1 ATGTATCGATACA
922288 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:924534 original size:21 final size:21
Alignment explanation
Indices: 924501--924545 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
924491 TTGCAAGTTG
*
924501 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
924523 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
924543 AAA
1 AAA
924546 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:928471 original size:20 final size:20
Alignment explanation
Indices: 928392--928471 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
928382 AATGTCCAAA
*
928392 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
928412 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
928437 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
928457 TTGTATCGATACATT
1 ATGTATCGATACATT
928472 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:928475 original size:13 final size:13
Alignment explanation
Indices: 928457--928495 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
928447 ACATTTTTCT
928457 TTGTATCGATACA
1 TTGTATCGATACA
928470 TTGTATCGATACA
1 TTGTATCGATACA
*
928483 CTGTATCGATACA
1 TTGTATCGATACA
928496 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:930970 original size:20 final size:21
Alignment explanation
Indices: 930947--931040 Score: 111
Period size: 20 Copynumber: 4.6 Consensus size: 21
930937 ACAATTCAAA
** *
930947 GTATCGATACATGTTACA-AT
1 GTATCGATACATGAAAAAGAT
930967 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGAAAAAGAT
****
930988 GTATCGATACATGTTGCA-AT
1 GTATCGATACATGAAAAAGAT
931008 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGAAAAAGAT
931029 GTATCGATACAT
1 GTATCGATACAT
931041 TTCTTGGCAG
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
20 31 0.51
21 30 0.49
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (21 bp):
GTATCGATACATGAAAAAGAT
Found at i:930998 original size:41 final size:41
Alignment explanation
Indices: 930947--931040 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
930937 ACAATTCAAA
930947 GTATCGATACATGTTACAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTACAATGTATCGATACATGAAAAAGAT
*
930988 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTACAATGTATCGATACATGAAAAAGAT
931029 GTATCGATACAT
1 GTATCGATACAT
931041 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTACAATGTATCGATACATGAAAAAGAT
Found at i:931097 original size:13 final size:13
Alignment explanation
Indices: 931079--931104 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
931069 TACAGCAAGT
931079 ATGTATCGATACA
1 ATGTATCGATACA
931092 ATGTATCGATACA
1 ATGTATCGATACA
931105 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:945372 original size:20 final size:20
Alignment explanation
Indices: 945339--945389 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
945329 CTTCCATTGT
945339 CCAAACACCTATTTAGCATGA
1 CCAAACA-CTATTTAGCATGA
945360 CCAAACACTATTTAGCATGA
1 CCAAACACTATTTAGCATGA
945380 CCAAACACTA
1 CCAAACACTA
945390 ACTCATTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 23 0.77
21 7 0.23
ACGTcount: A:0.41, C:0.29, G:0.08, T:0.22
Consensus pattern (20 bp):
CCAAACACTATTTAGCATGA
Found at i:946344 original size:30 final size:30
Alignment explanation
Indices: 946289--946411 Score: 142
Period size: 30 Copynumber: 4.0 Consensus size: 30
946279 TCACCCTTCA
* *
946289 AAAGCCCACAAGTCAGTGGCA-TCTTTTTC
1 AAAGCCCACAACTCCGTGGCACTCTTTTTC
946318 AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC
1 AAAGCCCACAACTCCGTGGCACTC--TTT--TTC
* * *
946352 TAAGTCCACGACTCCGTGGCAC-CTTCTTTC
1 AAAGCCCACAACTCCGTGGCACTCTT-TTTC
946382 AAAGCCCACAACTCCGTGGCACTCTTTTTC
1 AAAGCCCACAACTCCGTGGCACTCTTTTTC
946412 CCTTTTAAAG
Statistics
Matches: 79, Mismatches: 8, Indels: 13
0.79 0.08 0.13
Matches are distributed among these distances:
29 19 0.24
30 28 0.35
31 5 0.06
32 4 0.05
33 1 0.01
34 22 0.28
ACGTcount: A:0.22, C:0.35, G:0.15, T:0.28
Consensus pattern (30 bp):
AAAGCCCACAACTCCGTGGCACTCTTTTTC
Done.