genome.fa.s1930.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1930
Parameters: 2 7 7 80 10 50 1000
Length:  35626

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217--394	53	3.4	51	84	9	234	28	19	19	33	1.96
220--414	52	3.7	51	83	9	162	29	19	18	31	1.96
403--427	13	1.9	13	100	0	50	36	16	16	32	1.90
486--572	13	5.9	13	72	27	68	32	18	13	35	1.90
462--592	32	4.1	32	94	4	230	34	18	12	35	1.88
462--592	63	2.1	64	94	4	230	34	18	12	35	1.88
1272--1917	93	6.9	92	84	8	800	30	17	26	25	1.98
1272--1938	43	14.1	49	76	15	572	30	17	26	25	1.97
1428--1917	191	2.6	196	84	8	604	30	18	26	25	1.98
1238--1933	283	2.5	284	83	9	856	29	17	26	26	1.98
1641--1933	136	2.2	132	82	8	358	29	19	25	25	1.98
1942--2025	28	2.9	31	79	18	108	19	19	27	34	1.95
1981--2114	29	4.6	29	85	2	162	20	15	31	32	1.94
1996--2113	59	2.0	59	89	0	182	22	16	31	29	1.96
3507--3554	5	9.8	5	80	10	55	0	0	16	83	0.65
3506--3551	13	3.4	14	77	22	53	0	0	17	82	0.67
3507--3585	30	2.6	29	82	6	77	1	3	13	81	0.90
3521--3565	20	2.3	19	81	11	54	0	6	8	84	0.78
21772--22133	61	6.0	60	81	5	406	26	25	18	29	1.98
21772--22133	120	3.0	119	83	7	460	26	25	18	29	1.98
22885--22910	13	2.0	13	100	0	52	30	15	15	38	1.88
22970--23042	20	3.6	20	81	3	101	31	19	13	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22949--23042	41	2.3	41	96	0	170	30	18	12	38	1.88
22949--23024	21	3.7	21	78	3	91	30	17	11	40	1.85
23677--23718	21	2.0	21	100	0	84	52	19	4	23	1.65
25506--25543	13	2.9	13	92	0	58	34	15	15	34	1.90
25532--25608	20	3.6	20	77	16	73	42	15	15	25	1.86
27618--27648	15	2.1	15	93	0	53	12	22	16	48	1.80
29775--29879	51	2.1	49	91	3	165	34	8	24	32	1.86
29812--30255	79	5.6	77	81	3	465	34	11	25	29	1.90
29813--30245	157	2.7	156	83	6	543	33	11	25	29	1.91
32165--32220	20	2.7	20	86	5	76	41	10	16	32	1.82
32207--32248	20	2.1	20	90	0	66	30	14	9	45	1.77
32288--32342	20	2.8	20	91	0	92	32	7	9	50	1.61
32838--33008	65	2.6	67	84	5	229	32	15	26	24	1.95
33331--33403	20	3.6	20	81	3	101	35	13	19	31	1.91
33331--33423	41	2.3	40	96	1	168	37	12	18	31	1.88
33350--33423	20	3.7	19	74	15	69	39	12	17	31	1.86
33463--33488	13	2.0	13	100	0	52	38	15	15	30	1.88
33445--33507	32	2.0	32	87	6	92	39	15	15	28	1.89

Tables:   1

The End!