Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1933
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7740
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Found at i:1409 original size:42 final size:42
Alignment explanation
Indices: 1354--1472 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1344 TTCTTCTCTC
* *
1354 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1396 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1438 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1473 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1413 original size:12 final size:11
Alignment explanation
Indices: 1387--1462 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1377 TCTATTATCT
*
1387 CTCCTGTCTCTC
1 CTCCTATCTC-C
1399 CTCCTATCATCC
1 CTCCTATC-TCC
1411 CTCCTATCT--
1 CTCCTATCTCC
*
1420 CTACTATCT--
1 CTCCTATCTCC
*
1429 CTCCTGTCTCTC
1 CTCCTATCTC-C
1441 CTCCTATCATCC
1 CTCCTATC-TCC
*
1453 CTCCTCTCTC
1 CTCCTATCTC
1463 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1414 original size:24 final size:24
Alignment explanation
Indices: 1378--1463 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1368 CCTCCTCTCT
* *
1378 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
1402 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
1423 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
1444 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
1464 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:1438 original size:18 final size:18
Alignment explanation
Indices: 1369--1439 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
1359 CCTGTCATCC
* *
1369 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
1387 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
1409 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
1429 CTCCTGTCTCT
1 CTCCTGTCTCT
1440 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:3125 original size:143 final size:144
Alignment explanation
Indices: 2943--3230 Score: 569
Period size: 143 Copynumber: 2.0 Consensus size: 144
2933 CTAACTCCAG
2943 ATTGGGTCTACTTTCAAATAGGCCAGCAACCATCTTCTCTAGGTCTTCCTTTATCCTCTTTGCCT
1 ATTGGGTCTACTTTCAAATAGGCCAGCAACCATCTTCTCTAGGTCTTCCTTTATCCTCTTTGCCT
3008 TTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTT
66 TTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTT
3073 CCTTGGTTTTCATC
131 CCTTGGTTTTCATC
3087 ATTGGGTCTACTTTC-AATAGGCCAGCAACCATCTTCTCTAGGTCTTCCTTTATCCTCTTTGCCT
1 ATTGGGTCTACTTTCAAATAGGCCAGCAACCATCTTCTCTAGGTCTTCCTTTATCCTCTTTGCCT
3151 TTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTT
66 TTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTT
3216 CCTTGGTTTTCATC
131 CCTTGGTTTTCATC
3230 A
1 A
3231 CATCCTGAGG
Statistics
Matches: 144, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
143 129 0.90
144 15 0.10
ACGTcount: A:0.16, C:0.29, G:0.15, T:0.40
Consensus pattern (144 bp):
ATTGGGTCTACTTTCAAATAGGCCAGCAACCATCTTCTCTAGGTCTTCCTTTATCCTCTTTGCCT
TTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTT
CCTTGGTTTTCATC
Found at i:4551 original size:474 final size:474
Alignment explanation
Indices: 3231--7740 Score: 8251
Period size: 474 Copynumber: 9.5 Consensus size: 474
3221 GTTTTCATCA
3231 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGAA
1 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGAA
* *
3296 TCCATGTTTGTCTCATTTGAGGCACGGACTTAGATTTTACACAAATTGGTGGGACGAAAGCGTAT
66 TCCATGTTTGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGA-AAAAGCGTAT
* *
3361 CTTGCGAAACCAAAGCATCAATATCATGTATCCGTATAAGAAGACTATGTTTATGGTGCCAAATA
130 CTTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATC
**
3426 CAGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAAGACAACGTTGATTCT
195 CAGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCT
* * * *
3491 ATCAATAACGGCGGAAAGACAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAAT
260 ATCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
3556 GAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCAT
325 GAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCAT
* *
3621 ATCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCAATGCAAA
390 GTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAA
*
3686 AGAAAACCATCAATATCATG
455 AGAAAACCATCAATATCTTG
3706 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGAA
1 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGAA
* * *
3771 TCCATTTTTGTCTCATTTGAGGCACGGACTTAGATTTTACACAAATTGGTGGGACGAAAGCGTAT
66 TCCATGTTTGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGA-AAAAGCGTAT
* *
3836 CTTGCGAAACCAAAGCATCAATATCATGTATCCGTATAAGAAGACTATGTTTATGGTGCCAAATA
130 CTTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATC
**
3901 CAGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAAGACAACGTTGATTCT
195 CAGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCT
* * *
3966 ATCAATAACGGCGGAAAGACAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
260 ATCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
*
4031 GAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACT-TTAACAAGAATCAATGCA
325 GAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTT-ACGAGAATCAATGCA
* *
4095 TATCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCAATGCAA
389 TGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAA
*
4160 AAGAAAACCATCAATATCATG
454 AAGAAAACCATCAATATCTTG
4181 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGAA
1 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGAA
*
4246 TCCATGTTTGTCTCGTTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATC
66 TCCATGTTTGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATC
*
4311 TTGCGAAACCAAAGCATCAATATCATGTATCCGTATAAGAAGACTATGTTTATGGTGCCAAATCC
131 TTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCC
*
4376 AGAAAAGAATGGGGATTAGTAAGAGTATTCTTGTTTGTCTTATTTAAAAGACAATTTTGATTCTA
196 AGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTA
*
4441 TCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAATG
261 TCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* *
4506 AAAGGAATGTGTTGTTGGTTCCTAATCTTGAAAAGAATGGAGACT-TTAACAAGAATCAATGCAT
326 AAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTT-ACGAGAATCAATGCAT
* *
4570 ATCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCAATGCAAA
390 GTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAA
4635 AGAAAACCATCAATATCTTG
455 AGAAAACCATCAATATCTTG
4655 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGAA
1 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGAA
*
4720 TCCACGTTTGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATC
66 TCCATGTTTGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATC
4785 TTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCC
131 TTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCC
*
4850 AGAAAAGAATGGGGATTAGTAAGAGTATTCTTGTTTGTCTTATTTAAAAGACAATTTTGATTCTA
196 AGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTA
*
4915 TCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAATG
261 TCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
4980 AAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATG
326 AAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATG
5045 TCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAA
391 TCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAA
5110 GAAAACCATCAATATCTTG
456 GAAAACCATCAATATCTTG
*
5129 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAA
1 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGAA
*
5194 TCCATGTTTGTCTCATTTGAGGCGCGGACTTGGATTTTACACAAATTGGTGGGAAAAAGCGTATC
66 TCCATGTTTGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATC
5259 TTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCC
131 TTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCC
5324 AGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTA
196 AGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTA
*
5389 TCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAATG
261 TCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
*
5454 AAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAAAGGAGACTGTTACGAGAATCAATGCATG
326 AAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATG
*
5519 TCTCACTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAA
391 TCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAA
5584 GAAAACCATCAATATCTTG
456 GAAAACCATCAATATCTTG
*
5603 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAA
1 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGAA
*
5668 TCCATGTTTGTCTCATTTGAGGCGCGGACTTAGGTTTTACACAAATTGGTGGGAAAAAGCGTATC
66 TCCATGTTTGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATC
5733 TTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCC
131 TTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCC
5798 AGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTA
196 AGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTA
5863 TCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
261 TCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
*
5928 AAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAAAATGGAGACTGTTACGAGAATCAATGCATG
326 AAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATG
*
5993 TCTCATTTAAAGTGCAAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGATTTCGATGCAAAA
391 TCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAA
6058 GAAAACCATCAATATCTTG
456 GAAAACCATCAATATCTTG
*
6077 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAA
1 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGAA
6142 TCCATGTTTGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATC
66 TCCATGTTTGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATC
6207 TTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCC
131 TTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCC
6272 AGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTA
196 AGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTA
6337 TCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
261 TCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
6402 AAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATG
326 AAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATG
*
6467 TCTCATTTAAAGTGCAAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGATTTCGATGCAAAA
391 TCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAA
6532 GAAAACCATCAATATCTTG
456 GAAAACCATCAATATCTTG
6551 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGAA
1 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGAA
* *
6616 TCCATGTTTGTCTCATTTGAGGCACGGACTTAGATTTTACACAAATTGGTGGGACGAAAGCGTAT
66 TCCATGTTTGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGA-AAAAGCGTAT
* *
6681 CTTGCGAAACCAAAGCATCAATATCATGTATCCGTATAAGAAGACTATGTTTATGGTGCCAAATA
130 CTTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATC
* * * **
6746 CAGAAAACAATGGGGATTAGTAAGTGTATTCATGTTTGTCTTATTTAAAAGAGAACATTGATTCT
195 CAGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCT
* *
6811 ATCAAAAATGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAAT
260 ATCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* *
6876 GAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAAAATGGAGACTGTTATGAGAATCAATGCAT
325 GAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCAT
*
6941 GTCTCATTTAAAGTGCAAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGATTTCGATGCAAA
390 GTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAA
7006 AGAAAACCATCAATATCTTG
455 AGAAAACCATCAATATCTTG
*
7026 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAA
1 CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGAA
7091 TCCATGTTTGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATC
66 TCCATGTTTGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATC
7156 TTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCC
131 TTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCC
7221 AGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTA
196 AGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTA
7286 TCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
261 TCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
*
7351 AAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAAAATGGAGACTGTTACGAGAATCAATGCATG
326 AAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATG
7416 TCTCATTTAAAGTGCAAACTTTGATTTTAT-GAAAATAAGGCAAAGAAAAGATTTCGATGC-AAA
391 TCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAA
7479 GAAAACCATCAATATCTTG
456 GAAAACCATCAATATCTTG
* *
7498 CATCCTGAGGAGGAGAATGTGTTTTATAGTGCCTAATCAT-AAATGAGTGACGATCC-TACTAGA
1 CATCCTGAGGAGGAGAATGTG-TTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGA
* * * *
7561 AACCATGTTTGTCTCATTTGAGGCGCGGACTTAGGTATTTACACAAATTTGTGGG-AAAAGTGTA
65 ATCCATGTTTGTCTCATTTGAGGCGCGGACTTAGAT-TTTACACAAATTGGTGGGAAAAAGCGTA
* *
7625 TCCTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCTAAT
129 TCTTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAAT
7690 CCAGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAA
194 CCAGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAA
Statistics
Matches: 3956, Mismatches: 74, Indels: 14
0.98 0.02 0.00
Matches are distributed among these distances:
471 163 0.04
472 75 0.02
473 47 0.01
474 2624 0.66
475 1047 0.26
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.30
Consensus pattern (474 bp):
CATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGAA
TCCATGTTTGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATC
TTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCC
AGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTA
TCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
AAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATG
TCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAA
GAAAACCATCAATATCTTG
Done.