genome.fa.s1937.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1937
Parameters: 2 7 7 80 10 50 1000
Length:  57681

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37--76	20	2.0	21	95	5	73	45	15	10	30	1.78
434--500	37	1.9	35	88	11	102	32	11	25	29	1.92
2026--2184	83	1.9	84	81	8	191	54	3	16	25	1.59
5479--5504	13	2.0	13	100	0	52	38	15	15	30	1.88
5962--6028	37	1.9	35	88	11	102	32	11	25	29	1.92
6663--6750	26	3.3	26	64	9	68	27	30	19	22	1.98
6634--7140	55	9.0	55	89	5	698	26	28	21	23	1.99
6646--6731	29	3.1	29	63	10	79	26	30	19	23	1.98
6750--6886	27	5.0	27	60	3	76	27	25	21	24	1.99
7157--7268	57	1.9	58	87	5	165	27	23	19	29	1.98
7016--7394	131	2.8	133	88	3	548	22	27	18	31	1.97
7288--7520	61	3.9	60	82	8	267	24	25	20	30	1.99
8463--8488	13	2.0	13	100	0	52	30	15	15	38	1.88
10841--11074	51	4.6	52	77	4	242	32	24	10	33	1.89
11007--11212	79	2.6	80	75	8	197	27	24	12	35	1.91
22414--22465	20	2.6	20	87	6	70	40	13	15	30	1.86
23237--23269	10	3.2	10	91	8	57	87	12	0	0	0.53
24348--24833	55	8.5	55	78	11	437	27	26	20	25	1.99
24382--24833	117	3.9	117	83	8	557	27	26	20	25	1.99
24356--24841	172	2.8	166	82	9	489	27	26	20	25	1.99
24356--24833	227	2.1	231	89	3	734	27	26	20	24	1.99
27964--28132	51	3.3	51	83	4	173	28	27	11	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28116--28338	76	2.9	75	85	4	297	26	26	14	32	1.95
28295--28464	51	3.3	50	81	4	196	31	25	12	30	1.92
30873--30925	7	7.6	7	87	8	72	84	1	11	1	0.77
31880--32207	61	5.4	61	84	2	396	26	28	17	28	1.98
32189--32367	43	4.2	42	83	7	195	22	24	12	40	1.89
32189--32367	85	2.1	85	86	3	254	22	24	12	40	1.89
35550--35658	50	2.2	49	83	8	130	27	22	13	35	1.92
35553--35658	51	2.1	49	82	8	124	28	23	11	36	1.89
36524--36575	20	2.7	20	84	3	70	26	15	19	38	1.91
37257--37356	41	2.4	41	93	0	173	31	26	5	38	1.78
46954--46979	7	3.7	7	100	0	52	69	0	0	30	0.89
46952--46986	14	2.5	14	85	0	52	62	0	0	37	0.95
47110--47167	22	2.6	22	75	8	64	48	1	1	48	1.22
47343--47421	29	2.7	29	79	11	81	43	3	0	53	1.19
47407--47432	7	3.7	7	100	0	52	30	0	0	69	0.89
47378--47452	37	2.1	36	84	2	96	42	2	0	54	1.14
51213--51238	2	13.0	2	100	0	52	50	0	50	0	1.00
51840--51901	32	1.9	32	86	0	88	50	22	9	17	1.75
52602--52632	15	2.1	15	100	0	62	32	35	12	19	1.90

Tables:   1

The End!