genome.fa.s1938.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1938
Parameters: 2 7 7 80 10 50 1000
Length:  105443

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2848--2900	20	2.7	20	88	5	72	39	20	11	28	1.87
3950--3974	13	1.9	13	100	0	50	32	16	16	36	1.90
3962--4014	20	2.6	21	84	3	72	39	15	16	28	1.89
4067--4091	13	1.9	13	100	0	50	32	16	16	36	1.90
9846--9870	13	1.9	13	100	0	50	32	16	16	36	1.90
9917--9970	22	2.5	22	93	0	90	25	20	11	42	1.85
10113--10151	20	2.0	19	90	5	60	33	12	15	38	1.85
10517--10583	37	1.9	35	88	11	102	32	11	25	29	1.92
11508--11533	13	2.0	13	100	0	52	30	23	15	30	1.95
11655--11701	22	2.3	19	85	10	58	34	17	4	44	1.68
13960--13984	13	1.9	13	100	0	50	32	16	16	36	1.90
13972--14024	20	2.6	21	84	3	72	39	15	16	28	1.89
14056--14123	33	2.1	32	83	2	82	36	16	14	32	1.89
14838--14883	24	1.9	24	95	0	83	13	17	19	50	1.78
20065--20095	8	3.8	8	95	4	53	12	0	25	61	1.32
20271--20309	13	3.0	13	96	0	69	30	15	17	35	1.91
22791--22815	13	1.9	13	100	0	50	32	16	16	36	1.90
22896--22962	33	2.1	33	88	2	100	34	19	13	32	1.91
26762--26814	20	2.7	20	85	2	63	30	16	18	33	1.94
26859--26911	13	4.5	13	77	22	71	33	13	16	35	1.88
26841--26911	34	2.1	33	92	2	115	32	12	19	35	1.90
35523--35578	23	2.6	22	88	8	80	28	17	14	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47839--47884	17	2.8	16	83	9	56	86	6	2	4	0.75
47838--47884	13	3.5	13	82	11	51	87	6	2	4	0.74
49144--49715	28	20.0	28	82	6	506	29	29	17	23	1.97
49143--49713	56	10.0	56	84	4	624	29	29	17	23	1.97
49143--49713	84	6.7	84	82	5	574	29	29	17	23	1.97
49794--49916	49	2.6	46	82	7	140	20	29	20	30	1.97
50630--50702	20	3.7	19	78	10	67	34	13	15	36	1.86
50648--50703	20	2.8	21	83	5	71	32	16	14	37	1.88
59970--60109	65	2.2	65	98	0	271	47	10	20	21	1.80
59991--60095	33	3.2	33	63	12	90	49	11	20	19	1.78
64102--64131	14	2.2	14	94	5	53	33	23	13	30	1.93
65856--66134	147	1.8	153	90	7	455	51	12	2	33	1.53
65856--66078	72	3.0	72	64	17	177	50	11	2	35	1.53
68477--68501	13	1.9	13	100	0	50	32	16	16	36	1.90
68602--68627	13	2.0	13	100	0	52	30	15	15	38	1.88
68582--68649	33	2.1	32	88	2	100	33	19	13	33	1.90
76413--76535	63	1.9	66	81	8	155	37	9	19	33	1.85
80992--81045	20	2.7	20	91	8	83	29	18	12	38	1.88
85589--85642	20	2.7	21	85	8	76	31	18	14	35	1.91
88152--88183	13	2.5	13	89	0	55	34	12	15	37	1.85
90687--90753	33	2.0	32	86	11	91	34	17	13	34	1.89
90803--90855	19	2.7	20	91	2	81	39	18	16	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91376--91424	17	2.9	17	76	11	55	30	32	2	34	1.69
92566--92594	13	2.2	13	100	0	58	41	17	13	27	1.87
98773--98825	20	2.7	20	88	11	74	30	18	13	37	1.89
98855--98911	19	2.9	19	89	5	78	35	17	17	29	1.93
98896--98922	13	2.1	13	100	0	54	40	14	14	29	1.86
98877--98941	32	2.0	32	90	3	103	40	16	16	26	1.90
103328--103411	28	2.9	28	84	8	98	35	16	14	33	1.89
103386--103410	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1

The End!