Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold194
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3945165
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1023 characters in sequence are not A, C, G, or T
File 5 of 24
Found at i:710883 original size:21 final size:21
Alignment explanation
Indices: 710854--710898 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
710844 AAGTTTTCAT
*
710854 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
710874 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
710896 TTT
1 TTT
710899 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:713134 original size:13 final size:13
Alignment explanation
Indices: 713116--713141 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
713106 CAATTTTTTG
713116 TGTATCGATACAT
1 TGTATCGATACAT
713129 TGTATCGATACAT
1 TGTATCGATACAT
713142 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:721568 original size:13 final size:13
Alignment explanation
Indices: 721550--721574 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
721540 TTGGGCACAA
721550 TGTATCGATACAT
1 TGTATCGATACAT
721563 TGTATCGATACA
1 TGTATCGATACA
721575 ATGTCCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:723610 original size:21 final size:20
Alignment explanation
Indices: 723570--723608 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
723560 TTAAGTATAA
723570 ATATTTTTCAAGCATTAAATC
1 ATATTTTTCAA-CATTAAATC
723591 ATATGTTTTCAA-ATTAAA
1 ATAT-TTTTCAACATTAAA
723609 ATAAATCAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 4 0.24
22 7 0.41
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (20 bp):
ATATTTTTCAACATTAAATC
Found at i:725685 original size:24 final size:24
Alignment explanation
Indices: 725652--725708 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
725642 TGATTCCTAG
725652 TACAGATAAATCTACTACACTTTAT
1 TACA-ATAAATCTACTACACTTTAT
**
725677 TACAATAAATCTACTTTACTTTAT
1 TACAATAAATCTACTACACTTTAT
*
725701 TACGATAA
1 TACAATAA
725709 TAGTGCGGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 25 0.86
25 4 0.14
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.39
Consensus pattern (24 bp):
TACAATAAATCTACTACACTTTAT
Found at i:729070 original size:586 final size:586
Alignment explanation
Indices: 727958--729130 Score: 2346
Period size: 586 Copynumber: 2.0 Consensus size: 586
727948 GTTTGATCCA
727958 TTATAAATTTTTAAAAATTTCACTATGCACTCTGATCAATTTTTTGCCAAGCCTTGTATCAATAC
1 TTATAAATTTTTAAAAATTTCACTATGCACTCTGATCAATTTTTTGCCAAGCCTTGTATCAATAC
728023 AATAACTTTAGGTATCTATACAACATTGTTTTCTTCAAATCTGGTGATATGGCAACCACTATATT
66 AATAACTTTAGGTATCTATACAACATTGTTTTCTTCAAATCTGGTGATATGGCAACCACTATATT
728088 AATACACCAAGGTTAGGTAAGGATACTTCTAAATAAAAATATGGATTTTGTTTACCTTTGGCTTC
131 AATACACCAAGGTTAGGTAAGGATACTTCTAAATAAAAATATGGATTTTGTTTACCTTTGGCTTC
728153 TCGAACAAATAACCTTAGGTAAGAATAATGGAAAATGGATCTGTATTTAATTATTTTGGTTTGTT
196 TCGAACAAATAACCTTAGGTAAGAATAATGGAAAATGGATCTGTATTTAATTATTTTGGTTTGTT
728218 GATGTTATGATGCTTATATAAAGGCCCAAACAAAATTTAGTCTCTATAGCTACCCCTCTTTGGCC
261 GATGTTATGATGCTTATATAAAGGCCCAAACAAAATTTAGTCTCTATAGCTACCCCTCTTTGGCC
728283 TTCATTGAGTATTAAGAATAGGGCAAAGACAAATAGCCACCATTTTGTCTAGAGTGGAATGATGT
326 TTCATTGAGTATTAAGAATAGGGCAAAGACAAATAGCCACCATTTTGTCTAGAGTGGAATGATGT
728348 TCTTCAAGTGCCTAAAAAATAAATTAAAATCTCACCATAATGAACATGATATTTTAGTGGTGATT
391 TCTTCAAGTGCCTAAAAAATAAATTAAAATCTCACCATAATGAACATGATATTTTAGTGGTGATT
728413 CTAACTGTGCGAGAGAATAATGTTAACGGATTTTTCTTGCAAGGTTTAACCTCTTCACTAGGTGC
456 CTAACTGTGCGAGAGAATAATGTTAACGGATTTTTCTTGCAAGGTTTAACCTCTTCACTAGGTGC
728478 AACCTTGTGTGGACTTGGATTTTATAGGACTTTATGCTCCTATTAGGTGTCAACAAGTGTGGACT
521 AACCTTGTGTGGACTTGGATTTTATAGGACTTTATGCTCCTATTAGGTGTCAACAAGTGTGGACT
728543 T
586 T
728544 TTATAAATTTTTAAAAATTTCACTATGCACTCTGATCAATTTTTTGCCAAGCCTTGTATCAATAC
1 TTATAAATTTTTAAAAATTTCACTATGCACTCTGATCAATTTTTTGCCAAGCCTTGTATCAATAC
728609 AATAACTTTAGGTATCTATACAACATTGTTTTCTTCAAATCTGGTGATATGGCAACCACTATATT
66 AATAACTTTAGGTATCTATACAACATTGTTTTCTTCAAATCTGGTGATATGGCAACCACTATATT
728674 AATACACCAAGGTTAGGTAAGGATACTTCTAAATAAAAATATGGATTTTGTTTACCTTTGGCTTC
131 AATACACCAAGGTTAGGTAAGGATACTTCTAAATAAAAATATGGATTTTGTTTACCTTTGGCTTC
728739 TCGAACAAATAACCTTAGGTAAGAATAATGGAAAATGGATCTGTATTTAATTATTTTGGTTTGTT
196 TCGAACAAATAACCTTAGGTAAGAATAATGGAAAATGGATCTGTATTTAATTATTTTGGTTTGTT
728804 GATGTTATGATGCTTATATAAAGGCCCAAACAAAATTTAGTCTCTATAGCTACCCCTCTTTGGCC
261 GATGTTATGATGCTTATATAAAGGCCCAAACAAAATTTAGTCTCTATAGCTACCCCTCTTTGGCC
728869 TTCATTGAGTATTAAGAATAGGGCAAAGACAAATAGCCACCATTTTGTCTAGAGTGGAATGATGT
326 TTCATTGAGTATTAAGAATAGGGCAAAGACAAATAGCCACCATTTTGTCTAGAGTGGAATGATGT
728934 TCTTCAAGTGCCTAAAAAATAAATTAAAATCTCACCATAATGAACATGATATTTTAGTGGTGATT
391 TCTTCAAGTGCCTAAAAAATAAATTAAAATCTCACCATAATGAACATGATATTTTAGTGGTGATT
728999 CTAACTGTGCGAGAGAATAATGTTAACGGATTTTTCTTGCAAGGTTTAACCTCTTCACTAGGTGC
456 CTAACTGTGCGAGAGAATAATGTTAACGGATTTTTCTTGCAAGGTTTAACCTCTTCACTAGGTGC
729064 AACCTTGTGTGGACTTGGATTTTATAGGACTTTATGCTCCTATTAGGTGTCAACAAGTGTGGACT
521 AACCTTGTGTGGACTTGGATTTTATAGGACTTTATGCTCCTATTAGGTGTCAACAAGTGTGGACT
729129 T
586 T
729130 T
1 T
729131 AACTCTATAG
Statistics
Matches: 587, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
586 587 1.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.36
Consensus pattern (586 bp):
TTATAAATTTTTAAAAATTTCACTATGCACTCTGATCAATTTTTTGCCAAGCCTTGTATCAATAC
AATAACTTTAGGTATCTATACAACATTGTTTTCTTCAAATCTGGTGATATGGCAACCACTATATT
AATACACCAAGGTTAGGTAAGGATACTTCTAAATAAAAATATGGATTTTGTTTACCTTTGGCTTC
TCGAACAAATAACCTTAGGTAAGAATAATGGAAAATGGATCTGTATTTAATTATTTTGGTTTGTT
GATGTTATGATGCTTATATAAAGGCCCAAACAAAATTTAGTCTCTATAGCTACCCCTCTTTGGCC
TTCATTGAGTATTAAGAATAGGGCAAAGACAAATAGCCACCATTTTGTCTAGAGTGGAATGATGT
TCTTCAAGTGCCTAAAAAATAAATTAAAATCTCACCATAATGAACATGATATTTTAGTGGTGATT
CTAACTGTGCGAGAGAATAATGTTAACGGATTTTTCTTGCAAGGTTTAACCTCTTCACTAGGTGC
AACCTTGTGTGGACTTGGATTTTATAGGACTTTATGCTCCTATTAGGTGTCAACAAGTGTGGACT
T
Found at i:729124 original size:50 final size:50
Alignment explanation
Indices: 729070--729179 Score: 123
Period size: 50 Copynumber: 2.2 Consensus size: 50
729060 GTGCAACCTT
* * * ** * *
729070 GTGTGGACTTGGATTTTATAGGACTTTATGCTCCTATTAGGTGT-CAACAA
1 GTGTGGACTTGAACTCTATAGGACTTTACCCTCCAATTAAGT-TCCAACAA
* *
729120 GTGTGGACTTTAACTCTATAGGACTTTACCCTCCAATTAAGTTCCAACTA
1 GTGTGGACTTGAACTCTATAGGACTTTACCCTCCAATTAAGTTCCAACAA
729170 GTGTGGACTT
1 GTGTGGACTT
729180 TGACTCTTAG
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
49 1 0.02
50 49 0.98
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (50 bp):
GTGTGGACTTGAACTCTATAGGACTTTACCCTCCAATTAAGTTCCAACAA
Found at i:729180 original size:50 final size:50
Alignment explanation
Indices: 729086--729186 Score: 132
Period size: 50 Copynumber: 2.0 Consensus size: 50
729076 ACTTGGATTT
** * *
729086 TATAGGACTTTATGCTCCTATTAGGTGTCAACAAGTGTGGACTTTAACTC
1 TATAGGACTTTACCCTCCAATTAAGTGTCAACAAGTGTGGACTTTAACTC
* *
729136 TATAGGACTTTACCCTCCAATTAAGT-TCCAACTAGTGTGGACTTTGACTC
1 TATAGGACTTTACCCTCCAATTAAGTGT-CAACAAGTGTGGACTTTAACTC
729186 T
1 T
729187 TAGTACTAAG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
49 1 0.02
50 43 0.98
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (50 bp):
TATAGGACTTTACCCTCCAATTAAGTGTCAACAAGTGTGGACTTTAACTC
Found at i:736190 original size:20 final size:20
Alignment explanation
Indices: 736165--736218 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
736155 GTATCGATAC
**
736165 AATGTATCGATACATGACTA
1 AATGTATCGATACATGAAAA
736185 AATGTATCGATACATGAAAA
1 AATGTATCGATACATGAAAA
736205 AATGTATCGATACA
1 AATGTATCGATACA
736219 AGTCATTGGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (20 bp):
AATGTATCGATACATGAAAA
Found at i:736288 original size:13 final size:13
Alignment explanation
Indices: 736270--736295 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
736260 ACACATAATA
736270 TGTATCGATACAT
1 TGTATCGATACAT
736283 TGTATCGATACAT
1 TGTATCGATACAT
736296 CACTGTAGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:736393 original size:17 final size:17
Alignment explanation
Indices: 736371--736403 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
736361 GGATTCGACT
736371 TATTGGCACCATCATCA
1 TATTGGCACCATCATCA
736388 TATTGGCACCATCATC
1 TATTGGCACCATCATC
736404 TTTAAGTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.30
Consensus pattern (17 bp):
TATTGGCACCATCATCA
Found at i:736461 original size:48 final size:48
Alignment explanation
Indices: 736389--736965 Score: 913
Period size: 48 Copynumber: 12.1 Consensus size: 48
736379 CCATCATCAT
736389 ATTGGCACCATCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
1 ATTGGCACC-TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
736438 ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
1 ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
*
736486 ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCAC
1 ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
736534 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
1 ATTGGCACC-TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
*
736583 ATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
1 ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
*
736631 ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCAC
1 ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
736679 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
1 ATTGGCACC-TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
*
736728 ATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
1 ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
736776 ATTGGCA---C--CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
1 ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
* *
736819 ATTGGCACCTCACCTTTAAGTCCATTGTAGCTGGCCTTGAATCAGCAC
1 ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
* *
736867 ATTGGCA---C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
1 ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
* * * *
736910 ATCGGCACCTTTTCCATCTTTAAGTTCAATATAACTGGCCTTGAATCAGCAC
1 ATTGGCACC---T-CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
736962 ATTG
1 ATTG
736966 ACATCCTTTT
Statistics
Matches: 496, Mismatches: 16, Indels: 29
0.92 0.03 0.05
Matches are distributed among these distances:
43 80 0.16
45 2 0.00
46 1 0.00
48 274 0.55
49 103 0.21
50 1 0.00
52 35 0.07
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (48 bp):
ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
Found at i:736571 original size:97 final size:96
Alignment explanation
Indices: 736389--736965 Score: 913
Period size: 97 Copynumber: 6.0 Consensus size: 96
736379 CCATCATCAT
736389 ATTGGCACCATCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
1 ATTGGCACC-TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
736454 TAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
65 TAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
*
736486 ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTT
736551 TAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
65 TAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
*
736583 ATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTT
1 ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTT
*
736648 AAGTCCAATGTAGCTGGCCTTGACTCAGCAC
66 AAGTCCAATGTAGCTGGCCTTGAATCAGCAC
*
736679 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTT
1 ATTGGCACC-TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
736744 TAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
65 TAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
*
736776 ATTGGCA---C--CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTT
1 ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTT
*
736836 AAGTCCATTGTAGCTGGCCTTGAATCAGCAC
66 AAGTCCAATGTAGCTGGCCTTGAATCAGCAC
* * *
736867 ATTGGCA---C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCAT
1 ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC---T-CAT
* * *
736927 CTTTAAGTTCAATATAACTGGCCTTGAATCAGCAC
62 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
736962 ATTG
1 ATTG
736966 ACATCCTTTT
Statistics
Matches: 458, Mismatches: 16, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
91 131 0.29
93 1 0.00
94 1 0.00
95 37 0.08
96 94 0.21
97 194 0.42
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (96 bp):
ATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTT
AAGTCCAATGTAGCTGGCCTTGAATCAGCAC
Found at i:736652 original size:145 final size:145
Alignment explanation
Indices: 736389--736965 Score: 933
Period size: 145 Copynumber: 4.0 Consensus size: 145
736379 CCATCATCAT
* *
736389 ATTGGCACCATCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
1 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTT
736454 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAATGTAGCTG
66 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAATGTAGCTG
*
736519 GCCTTGACTCAGCAC
131 GCCTTGAATCAGCAC
736534 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTT
1 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTT
736599 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAATGTAGCTG
66 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAATGTAGCTG
*
736664 GCCTTGACTCAGCAC
131 GCCTTGAATCAGCAC
736679 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTT
1 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTT
736744 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--CTTTAAGTCCAATGTAGCTG
66 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAATGTAGCTG
736804 GCCTTGAATCAGCAC
131 GCCTTGAATCAGCAC
* *
736819 ATTGGCACC-TCACCTTTAAGTCCATTGTAGCTGGCCTTGAATCAGCACATTGG-----CACCTT
1 ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTT
* * * * *
736878 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTTCAATATA
66 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC---T-CATCTTTAAGTCCAATGTA
*
736943 ACTGGCCTTGAATCAGCAC
127 GCTGGCCTTGAATCAGCAC
736962 ATTG
1 ATTG
736966 ACATCCTTTT
Statistics
Matches: 412, Mismatches: 11, Indels: 20
0.93 0.02 0.05
Matches are distributed among these distances:
134 42 0.10
139 42 0.10
140 43 0.10
141 1 0.00
142 1 0.00
143 36 0.09
145 247 0.60
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (145 bp):
ATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTT
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAATGTAGCTG
GCCTTGAATCAGCAC
Found at i:736786 original size:21 final size:21
Alignment explanation
Indices: 736762--736828 Score: 50
Period size: 21 Copynumber: 3.1 Consensus size: 21
736752 ATGTAGCTGG
736762 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* * *
736783 CCTTTAAGTC--CA-ATGTAGCTGG
1 CCTTGAA-TCAGCACAT-TGGC--A
736805 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
736826 CCT
1 CCT
736829 CACCTTTAAG
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 11 0.33
22 8 0.24
23 5 0.15
24 2 0.06
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:736799 original size:43 final size:43
Alignment explanation
Indices: 736693--736921 Score: 332
Period size: 43 Copynumber: 5.1 Consensus size: 43
736683 GCACCTTCAT
736693 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CAC
736741 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
736784 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CAC
*
736832 CTTTAAGTCCATTGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
736875 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
736918 CTTT
1 CTTT
736922 TCCATCTTTA
Statistics
Matches: 171, Mismatches: 5, Indels: 15
0.90 0.03 0.08
Matches are distributed among these distances:
43 89 0.52
48 82 0.48
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (43 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:736808 original size:22 final size:22
Alignment explanation
Indices: 736740--736808 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
736730 TGGCACCTCA
736740 CCTTTAAGTCCAATGTAGCTGG
1 CCTTTAAGTCCAATGTAGCTGG
* * *
736762 CCTTGAA-TCAGCACAT-TGGC--A
1 CCTTTAAGTC--CA-ATGTAGCTGG
736783 CCTTTAAGTCCAATGTAGCTGG
1 CCTTTAAGTCCAATGTAGCTGG
736805 CCTT
1 CCTT
736809 GAATCAGCAC
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 12 0.35
23 5 0.15
24 2 0.06
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (22 bp):
CCTTTAAGTCCAATGTAGCTGG
Found at i:736836 original size:91 final size:91
Alignment explanation
Indices: 736693--736974 Score: 438
Period size: 91 Copynumber: 3.0 Consensus size: 91
736683 GCACCTTCAT
736693 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAG
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAG
736758 CTGGCCTTGAATCAGCACATTGGCAC
66 CTGGCCTTGAATCAGCACATTGGCAC
*
736784 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCATTGTAG
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAG
736849 CTGGCCTTGAATCAGCACATTGGCAC
66 CTGGCCTTGAATCAGCACATTGGCAC
* * * * *
736875 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC---T-CACCTTTAAGTCCAAT
* * *
736940 ATAACTGGCCTTGAATCAGCACATTGACATC
62 GTAGCTGGCCTTGAATCAGCACATTGGCA-C
736971 CTTT
1 CTTT
736975 TTCATCATCT
Statistics
Matches: 176, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
91 131 0.74
94 1 0.01
95 39 0.22
96 5 0.03
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.30
Consensus pattern (91 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAG
CTGGCCTTGAATCAGCACATTGGCAC
Found at i:737005 original size:56 final size:52
Alignment explanation
Indices: 736875--737013 Score: 161
Period size: 52 Copynumber: 2.6 Consensus size: 52
736865 ACATTGGCAC
* *
736875 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATCGACACCTTTTCCAT
* * *
736927 CTTTAAGTTCAATATAACTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATCGACA-CC-TTTTC--CAT
* * * *
736983 CTTTAAGCCCAATATCGTTGGCCGTGAATCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCA
737014 ACATATTGGC
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
52 37 0.51
53 2 0.03
54 5 0.07
56 28 0.39
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (52 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATCGACACCTTTTCCAT
Found at i:737079 original size:175 final size:170
Alignment explanation
Indices: 736875--737255 Score: 414
Period size: 170 Copynumber: 2.2 Consensus size: 170
736865 ACATTGGCAC
* *
736875 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGT-TCAA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATCGGCACC-TTT--ATCTTTAAGTCT-AA
*
736939 TATAACTGGCCTTG-A-ATCAGCACATTGACATCCTTTTTCATCATCTTT-AAGCCCAATATCGT
62 TATAACTAGCC--GCATATCAGCAC-TT-ACATCCTTTTTC-TCATCTTTGAA-CCCAATATCGT
* * *
737001 TGGCCGTGAATCAACATATTGG-CATCTTTATCACTTTTC-TCATCTTCTT
121 TGGCCGTGAATCAACATATTGGTCAT-TTTATCACTCTTCATCATCATCAT
* * *
737050 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCTAATATC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATCGGCACCTTTATCTTTAAGTCTAATATA
* ** * **
737115 GCTAGCCGCATATTGGCTCTTTTATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCCGTGAA
66 ACTAGCCGCATATCAGCACTTACATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCCGTGAA
* * * *
737180 TCAACGTATTGGTCCTTTTATCGCTCTTCATCCTCATCAT
131 TCAACATATTGGTCATTTTATCACTCTTCATCATCATCAT
* * * *
737220 CTTTAAGTCCAGTGTGGCAGGCCTTGAATCTGCACA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
737256 GTGGCACACT
Statistics
Matches: 177, Mismatches: 23, Indels: 17
0.82 0.11 0.08
Matches are distributed among these distances:
169 51 0.29
170 54 0.31
171 3 0.02
172 25 0.14
173 1 0.01
174 3 0.02
175 40 0.23
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.37
Consensus pattern (170 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATCGGCACCTTTATCTTTAAGTCTAATATA
ACTAGCCGCATATCAGCACTTACATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCCGTGAA
TCAACATATTGGTCATTTTATCACTCTTCATCATCATCAT
Found at i:737872 original size:33 final size:33
Alignment explanation
Indices: 737835--737901 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
737825 TTCAACGAAT
737835 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
737868 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
737901 T
1 T
737902 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:737873 original size:13 final size:13
Alignment explanation
Indices: 737855--737879 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
737845 CATAAAATGT
737855 TGTATCGATACAA
1 TGTATCGATACAA
737868 TGTATCGATACA
1 TGTATCGATACA
737880 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:738003 original size:51 final size:53
Alignment explanation
Indices: 737941--738085 Score: 181
Period size: 52 Copynumber: 2.8 Consensus size: 53
737931 CATTACTCAA
***
737941 ATGTATCGATACACTGAT-CTTTATATCGATACATGCAGGC-AATTTGCCCAG
1 ATGTATCGATACACTGATAAAATATATCGATACATGCAGGCAAATTTGCCCAG
** *
737992 ATGTATCGATACA-TTTTAAAATGTATCGATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACACTGATAAAATATATCGATACATGCAGGCAAATTTGCCCAG
* * *
738044 ATGTATCGATACACT-ATTAAATGTATCGATACATGCAAGCAA
1 ATGTATCGATACACTGATAAAATATATCGATACATGCAGGCAA
738086 CTTTTCATAT
Statistics
Matches: 82, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
50 2 0.02
51 31 0.38
52 48 0.59
53 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (53 bp):
ATGTATCGATACACTGATAAAATATATCGATACATGCAGGCAAATTTGCCCAG
Found at i:738055 original size:52 final size:52
Alignment explanation
Indices: 737964--738085 Score: 203
Period size: 52 Copynumber: 2.4 Consensus size: 52
737954 CTGATCTTTA
*
737964 TATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAATG
1 TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAATG
738015 TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAATG
1 TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAATG
*
738067 TATCGATACATGCAAGCAA
1 TATCGATACATGCAGGCAA
738086 CTTTTCATAT
Statistics
Matches: 67, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
51 17 0.25
52 47 0.70
53 3 0.04
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (52 bp):
TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAATG
Found at i:747350 original size:13 final size:13
Alignment explanation
Indices: 747332--747368 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
747322 GCATTCTCTA
747332 TATCGATACAATG
1 TATCGATACAATG
*
747345 TATCGATACAGTG
1 TATCGATACAATG
747358 TATCGATACAA
1 TATCGATACAA
747369 GGGGTTTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:747836 original size:20 final size:22
Alignment explanation
Indices: 747811--747853 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
747801 AGCACCCACT
*
747811 AGGTCGCGACCG-GC-ACCCCC
1 AGGTCGCAACCGAGCAACCCCC
747831 AGGTCGCAACCGAGCAACCCCC
1 AGGTCGCAACCGAGCAACCCCC
747853 A
1 A
747854 CACTAGCAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 11 0.55
21 2 0.10
22 7 0.35
ACGTcount: A:0.23, C:0.47, G:0.26, T:0.05
Consensus pattern (22 bp):
AGGTCGCAACCGAGCAACCCCC
Found at i:749286 original size:22 final size:23
Alignment explanation
Indices: 749261--749306 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
749251 CGAAATTGTT
749261 AAATTATTTT-ATT-AAGGGGGAG
1 AAATT-TTTTGATTAAAGGGGGAG
749283 AAATTTTTTGATTAAAGGGGGAG
1 AAATTTTTTGATTAAAGGGGGAG
749306 A
1 A
749307 GAAAAGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.18
22 8 0.36
23 10 0.45
ACGTcount: A:0.37, C:0.00, G:0.28, T:0.35
Consensus pattern (23 bp):
AAATTTTTTGATTAAAGGGGGAG
Found at i:749828 original size:20 final size:20
Alignment explanation
Indices: 749802--749858 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
749792 AACCCTGAAA
749802 AGTATCGATACACATTTA-A-
1 AGTATCGATACA-ATTTACAC
*
749821 ATGTATCGATACAAATTACAC
1 A-GTATCGATACAATTTACAC
749842 AGTATCGATACAATTTA
1 AGTATCGATACAATTTA
749859 TCGATACATG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
19 5 0.15
20 27 0.82
21 1 0.03
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.32
Consensus pattern (20 bp):
AGTATCGATACAATTTACAC
Found at i:749882 original size:20 final size:20
Alignment explanation
Indices: 749857--749906 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
749847 CGATACAATT
**
749857 TATCGATACATGACTAAATG
1 TATCGATACATGAAAAAATG
*
749877 TATCGATACTTGAAAAAATG
1 TATCGATACATGAAAAAATG
*
749897 TATCCATACA
1 TATCGATACA
749907 AGTCATTGGC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (20 bp):
TATCGATACATGAAAAAATG
Found at i:749988 original size:33 final size:32
Alignment explanation
Indices: 749933--750005 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 32
749923 TGGCAGTAGC
*
749933 TAAATTTGTATCAATACACACAATATGTATCGA
1 TAAA-TTGTATCAATACACACAAAATGTATCGA
*
749966 TAAATTGTATCGATACATCACAAAATGTATCGA
1 TAAATTGTATCAATACA-CACAAAATGTATCGA
*
749999 TATATTG
1 TAAATTG
750006 GCTTGTAACG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
32 12 0.33
33 24 0.67
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (32 bp):
TAAATTGTATCAATACACACAAAATGTATCGA
Found at i:750908 original size:13 final size:13
Alignment explanation
Indices: 750890--750915 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
750880 AACCTTTGAA
750890 TGTATCGATACAT
1 TGTATCGATACAT
750903 TGTATCGATACAT
1 TGTATCGATACAT
750916 GCTGCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:752758 original size:21 final size:21
Alignment explanation
Indices: 752732--752782 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
752722 CAAACTTAAA
752732 GAAGAAGAATGTGAGCAAACC
1 GAAGAAGAATGTGAGCAAACC
752753 GAAGAAGAATGTGAGCAAACC
1 GAAGAAGAATGTGAGCAAACC
*
752774 AAAGAAGAA
1 GAAGAAGAA
752783 AGCCATGGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.53, C:0.12, G:0.27, T:0.08
Consensus pattern (21 bp):
GAAGAAGAATGTGAGCAAACC
Found at i:757130 original size:13 final size:13
Alignment explanation
Indices: 757091--757132 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
757081 ACAACATTCC
757091 TTGTATCGATACA
1 TTGTATCGATACA
* *
757104 ATGTATAGATACA
1 TTGTATCGATACA
757117 TTGTATCGATACA
1 TTGTATCGATACA
757130 TTG
1 TTG
757133 GGTACTATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:759630 original size:21 final size:19
Alignment explanation
Indices: 759579--759636 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
759569 ATGTATCAAT
*
759579 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
* *
759598 TCATTGTGTCGATACATGG
1 ACATTGTATCGATACATGG
759617 ACAAATTGTATCGATACATG
1 AC--ATTGTATCGATACATG
759637 AAACTAGCAG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 17 0.53
21 15 0.47
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:759691 original size:20 final size:19
Alignment explanation
Indices: 759666--759718 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 19
759656 TATCACTATT
759666 TGTATCGATACATG-GTACAA
1 TGTATCGATACATGAG-A-AA
759686 TGTATCGATACATGAAGAAA
1 TGTATCGATACATG-AGAAA
759706 TGTATCGATACAT
1 TGTATCGATACAT
759719 AGCTTGTAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 29 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (19 bp):
TGTATCGATACATGAGAAA
Found at i:760826 original size:9 final size:9
Alignment explanation
Indices: 760812--760847 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
760802 TTATTCATTT
760812 TTTATTTAA
1 TTTATTTAA
760821 TTTATTTAA
1 TTTATTTAA
*
760830 TTTTATTAAA
1 -TTTATTTAA
760840 TTTATTTA
1 TTTATTTA
760848 TTTTTGATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTATTTAA
Found at i:760835 original size:19 final size:19
Alignment explanation
Indices: 760811--760857 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
760801 TTTATTCATT
760811 TTTTATTTAATTTATTTAA
1 TTTTATTTAATTTATTTAA
* *
760830 TTTTATTAAATTTATTTAT
1 TTTTATTTAATTTATTTAA
760849 TTTTGATTT
1 TTTT-ATTT
760858 TGTTTATTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 21 0.88
20 3 0.12
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (19 bp):
TTTTATTTAATTTATTTAA
Found at i:764202 original size:84 final size:84
Alignment explanation
Indices: 763886--764236 Score: 286
Period size: 84 Copynumber: 4.2 Consensus size: 84
763876 AGCAGTCTAC
* * * * * * **
763886 TCAATAAAGGATAAAAGAG-TTACTCAGG-ACTAAGCCAACAGGTGAACAACCGATAAAAAGGTT
1 TCAACAAAGGGTAAAGGAGTTTACTC-GGCACTAAACCGACAGGTAAACAAGGGAT-AAAAGGTT
* * * * * *
763949 GATCGAGGTTAAATCGAGAAG
64 GACCAAGGCTAAACCAATAAG
* * *
763970 CCAACAAATGGTAAAGGAG-TTACTCGGGACTAAACCGACAGGTAAACAAAAGGGATAAAAGGTT
1 TCAACAAAGGGTAAAGGAGTTTACTCGGCACTAAACCGACAGGTAAAC--AAGGGATAAAAGGTT
* *
764034 GA-CTAGGACTAAACCAACAAG
64 GACCAAGG-CTAAACCAATAAG
* * * * * * *
764055 CCAACACAA-GATAAA-GTGTTTA-TCGAGCACTAAGCTGACAAGTAAACAATGGATAAAAGGTT
1 TCAACA-AAGGGTAAAGGAGTTTACTCG-GCACTAAACCGACAGGTAAACAAGGGATAAAAGGTT
*
764117 GACCAAGGCTAAACCAATTAG
64 GACCAAGGCTAAACCAATAAG
* *
764138 TCAACAAAGGGTAAAGGAGTTTACTAGGCATTAAACCG-CTAGGTAAACAAGGGATAAAAGGTTG
1 TCAACAAAGGGTAAAGGAGTTTACTCGGCACTAAACCGAC-AGGTAAACAAGGGATAAAAGGTTG
* **
764202 ACCAAGGCTGAACTGATAAG
65 ACCAAGGCTAAACCAATAAG
764222 TCAACAAAGGGTAAA
1 TCAACAAAGGGTAAA
764237 AGATTTATGC
Statistics
Matches: 217, Mismatches: 38, Indels: 24
0.78 0.14 0.09
Matches are distributed among these distances:
82 2 0.01
83 40 0.18
84 116 0.53
85 52 0.24
86 7 0.03
ACGTcount: A:0.44, C:0.16, G:0.23, T:0.17
Consensus pattern (84 bp):
TCAACAAAGGGTAAAGGAGTTTACTCGGCACTAAACCGACAGGTAAACAAGGGATAAAAGGTTGA
CCAAGGCTAAACCAATAAG
Found at i:764232 original size:42 final size:41
Alignment explanation
Indices: 764094--764238 Score: 123
Period size: 41 Copynumber: 3.5 Consensus size: 41
764084 CTAAGCTGAC
* * * *
764094 AAGTAAACAATGGATAAAAGGTTGACCAAGGCTAAACCAAT
1 AAGTCAACAAAGGGTAAAAGGTTGACCAAGGCTAAACCGAT
* * * * *
764135 TAGTCAACAAAGGGTAAAGGAGTTTA-CTAGGCATTAAACCGCT
1 AAGTCAACAAAGGGTAAAAG-GTTGACCAAGGC--TAAACCGAT
* * * *
764178 AGGTAAAC-AAGGGATAAAAGGTTGACCAAGGCTGAACTGAT
1 AAGTCAACAAAGGG-TAAAAGGTTGACCAAGGCTAAACCGAT
764219 AAGTCAACAAAGGGTAAAAG
1 AAGTCAACAAAGGGTAAAAG
764239 ATTTATGCTG
Statistics
Matches: 78, Mismatches: 20, Indels: 12
0.71 0.18 0.11
Matches are distributed among these distances:
41 38 0.49
42 18 0.23
43 22 0.28
ACGTcount: A:0.44, C:0.14, G:0.24, T:0.18
Consensus pattern (41 bp):
AAGTCAACAAAGGGTAAAAGGTTGACCAAGGCTAAACCGAT
Found at i:764350 original size:81 final size:81
Alignment explanation
Indices: 764193--764351 Score: 183
Period size: 81 Copynumber: 2.0 Consensus size: 81
764183 AACAAGGGAT
* ** * * ** **
764193 AAAAGGTTGACCAAGGCTGAACTGATAAGTCAACAAAGGGTAAAAGATTTATGCTGGACTAAGCC
1 AAAAGGTTGACCAAGACAAAACTGAAAAGTCAACAAAGGATAAAAGATTTACCCAAGACTAAGCC
* * *
764258 GATAGGTAAACGAAAG
66 AATAAGAAAACGAAAG
* **
764274 AAAAGGTTGACCAAGACAAAATTGAAAAGTCAACAAAGGATAAAAGATTTACCCAAGACTAAGTT
1 AAAAGGTTGACCAAGACAAAACTGAAAAGTCAACAAAGGATAAAAGATTTACCCAAGACTAAGCC
764339 AATAAGAAAACGA
66 AATAAGAAAACGA
764352 GAGATAAAAA
Statistics
Matches: 63, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.48, C:0.13, G:0.21, T:0.18
Consensus pattern (81 bp):
AAAAGGTTGACCAAGACAAAACTGAAAAGTCAACAAAGGATAAAAGATTTACCCAAGACTAAGCC
AATAAGAAAACGAAAG
Found at i:764549 original size:47 final size:48
Alignment explanation
Indices: 764422--764882 Score: 243
Period size: 48 Copynumber: 9.4 Consensus size: 48
764412 ATATTGAACA
* * * * * *
764422 AGGGA-AAAAAGAGTTTGACTAGGTCTTAACGCCAATCCAGTCAAATG
1 AGGGATAAAAAGAGTTTGACCAGGCCCTAACACCAATACAGTCAAACG
* * * * * * * *
764469 ATGAATGAAAAGAGCTTGACTAGGTCCTTACACCAATATAGTCAAACG
1 AGGGATAAAAAGAGTTTGACCAGGCCCTAACACCAATACAGTCAAACG
** * *
764517 A-GGATGCAAAGAGTTTGACCAAGCCCTAACACCAATGCAGTCAAACG
1 AGGGATAAAAAGAGTTTGACCAGGCCCTAACACCAATACAGTCAAACG
* * * * * *
764564 AGGAATAAAAAGAGTTTGACCAGGTCTTAACATCAATGCAGTCAAACA
1 AGGGATAAAAAGAGTTTGACCAGGCCCTAACACCAATACAGTCAAACG
* * * * *
764612 ATGGATAAAAAAAAG-TTGACTAGGCCCTAGCACCAATACAGTCAAATG
1 AGGGAT-AAAAAGAGTTTGACCAGGCCCTAACACCAATACAGTCAAACG
* * * * **
764660 AGGGATGAAAAGAGTTTGACTAGGCCCTAGCACCAATACAATCAAATAA
1 AGGGATAAAAAGAGTTTGACCAGGCCCTAACACCAATACAGTCAAA-CG
* * * * ** * *
764709 AGGATGAAAAGAGAAGGATGAAAATAGTTTAACTAGGTCCTAACATTAATATAGTCAAATG
1 AGG--GATAA-A-AA-GA-G----T--TTGACC-AGGCCCTAACACCAATACAGTCAAACG
* *
764770 AGGGATGAAAAAG-GTTTGACCATGTCCC-AACACCAATATAGTCAAAC-
1 AGGGAT-AAAAAGAGTTTGACCA-GGCCCTAACACCAATACAGTCAAACG
* * * * * * *
764817 AAGGATGAAAAGAGTTTGACCAAGCCCTAACGCTAATGCAATCAAACG
1 AGGGATAAAAAGAGTTTGACCAGGCCCTAACACCAATACAGTCAAACG
*
764865 AGGGATGAAAAGA-TTTGA
1 AGGGATAAAAAGAGTTTGA
764883 GGGAAAGAGT
Statistics
Matches: 316, Mismatches: 75, Indels: 46
0.72 0.17 0.11
Matches are distributed among these distances:
46 8 0.03
47 80 0.25
48 166 0.53
49 17 0.05
51 4 0.01
52 1 0.00
53 2 0.01
54 2 0.01
55 2 0.01
57 1 0.00
58 2 0.01
59 4 0.01
60 2 0.01
61 6 0.02
62 19 0.06
ACGTcount: A:0.42, C:0.17, G:0.21, T:0.20
Consensus pattern (48 bp):
AGGGATAAAAAGAGTTTGACCAGGCCCTAACACCAATACAGTCAAACG
Found at i:764607 original size:95 final size:97
Alignment explanation
Indices: 764426--764882 Score: 302
Period size: 95 Copynumber: 4.6 Consensus size: 97
764416 TGAACAAGGG
* * * * * * *
764426 AAAAAAGAGTTTGACTAGGTCTTAACGCCAATCCAGTCAAATGATGAATGAAAAGAGCTTGACTA
1 AAAAAAGAGTTTGACTAGGCCCTAACACCAATACAGTCAAATGAGGAATGAAAAGAGTTTGACCA
* *
764491 GGTCCTTACACCAATATAGTCAAACGA-GGAT
66 GGTCCTTACACCAATACAGTCAAACAATGGAT
** * * * * *
764522 -GCAAAGAGTTTGACCAAGCCCTAACACCAATGCAGTCAAACGAGGAATAAAAAGAGTTTGACCA
1 AAAAAAGAGTTTGACTAGGCCCTAACACCAATACAGTCAAATGAGGAATGAAAAGAGTTTGACCA
* *
764586 GGT-CTTAACATCAATGCAGTCAAACAATGGAT
66 GGTCCTT-ACACCAATACAGTCAAACAATGGAT
* * * *
764618 AAAAAAAAG-TTGACTAGGCCCTAGCACCAATACAGTCAAATGAGGGATGAAAAGAGTTTGACTA
1 AAAAAAGAGTTTGACTAGGCCCTAACACCAATACAGTCAAATGAGGAATGAAAAGAGTTTGACCA
* * * *
764682 GG-CCCTAGCACCAATACAATCAAATAAAGGAT
66 GGTCCTTA-CACCAATACAGTCAAACAATGGAT
* * ** * *
764714 GAAAAGAGAAGGATGAAAATAGTTTAACTAGGTCCTAACATTAATATAGTCAAATGAGGGATGAA
1 ---AA-A-AA--A-G-----AGTTTGACTAGGCCCTAACACCAATACAGTCAAATGAGGAATGAA
* ** *
764779 AA-AGGTTTGACCATGTCCCAACACCAATATAGTCAAACAA-GGAT
53 AAGA-GTTTGACCAGGTCCTTACACCAATACAGTCAAACAATGGAT
* * * * * * * * *
764823 -GAAAAGAGTTTGACCAAGCCCTAACGCTAATGCAATCAAACGAGGGATGAAAAGA-TTTGA
1 AAAAAAGAGTTTGACTAGGCCCTAACACCAATACAGTCAAATGAGGAATGAAAAGAGTTTGA
764883 GGGAAAGAGT
Statistics
Matches: 281, Mismatches: 58, Indels: 46
0.73 0.15 0.12
Matches are distributed among these distances:
94 8 0.03
95 108 0.38
96 75 0.27
97 5 0.02
99 2 0.01
100 2 0.01
101 3 0.01
103 3 0.01
104 1 0.00
109 7 0.02
110 63 0.22
111 4 0.01
ACGTcount: A:0.42, C:0.18, G:0.20, T:0.20
Consensus pattern (97 bp):
AAAAAAGAGTTTGACTAGGCCCTAACACCAATACAGTCAAATGAGGAATGAAAAGAGTTTGACCA
GGTCCTTACACCAATACAGTCAAACAATGGAT
Found at i:764767 original size:62 final size:62
Alignment explanation
Indices: 764662--764780 Score: 148
Period size: 62 Copynumber: 1.9 Consensus size: 62
764652 GTCAAATGAG
* *
764662 GGATGAAAAGAGTTTGACTAGGCCCTAGCACCAATACAATCAAATAAAGGATGAAAAGAGAA
1 GGATGAAAAGAGTTTAACTAGGCCCTAACACCAATACAATCAAATAAAGGATGAAAAGAGAA
* * ** * * * *
764724 GGATGAAAATAGTTTAACTAGGTCCTAACATTAATATAGTCAAATGAGGGATGAAAA
1 GGATGAAAAGAGTTTAACTAGGCCCTAACACCAATACAATCAAATAAAGGATGAAAA
764781 AGGTTTGACC
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
62 47 1.00
ACGTcount: A:0.45, C:0.12, G:0.22, T:0.21
Consensus pattern (62 bp):
GGATGAAAAGAGTTTAACTAGGCCCTAACACCAATACAATCAAATAAAGGATGAAAAGAGAA
Found at i:764895 original size:14 final size:14
Alignment explanation
Indices: 764871--764961 Score: 87
Period size: 14 Copynumber: 6.5 Consensus size: 14
764861 AACGAGGGAT
764871 GAAAAGA-TTTGAG
1 GAAAAGAGTTTGAG
*
764884 GGAAAGAGTTTGATG
1 GAAAAGAGTTTGA-G
* * *
764899 AAAAAAAGTTTGAA
1 GAAAAGAGTTTGAG
*
764913 GAAAAGAGTTTGAT
1 GAAAAGAGTTTGAG
764927 GAAAAGAGTTTG-G
1 GAAAAGAGTTTGAG
* *
764940 TGAAAAGAGATTGAT
1 -GAAAAGAGTTTGAG
764955 GAAAAGA
1 GAAAAGA
764962 AAAGAAGTTG
Statistics
Matches: 63, Mismatches: 11, Indels: 7
0.78 0.14 0.09
Matches are distributed among these distances:
13 6 0.10
14 46 0.73
15 11 0.17
ACGTcount: A:0.47, C:0.00, G:0.30, T:0.23
Consensus pattern (14 bp):
GAAAAGAGTTTGAG
Found at i:764936 original size:28 final size:28
Alignment explanation
Indices: 764868--764961 Score: 118
Period size: 28 Copynumber: 3.4 Consensus size: 28
764858 TCAAACGAGG
* *
764868 GATGAAAAGA-TTTGAGGGAAAGAGTTT
1 GATGAAAAGAGTTTGAAGAAAAGAGTTT
*
764895 GATGAAAAAAAGTTTGAAGAAAAGAGTTT
1 GATG-AAAAGAGTTTGAAGAAAAGAGTTT
** *
764924 GATGAAAAGAGTTTGGTGAAAAGAGATT
1 GATGAAAAGAGTTTGAAGAAAAGAGTTT
764952 GATGAAAAGA
1 GATGAAAAGA
764962 AAAGAAGTTG
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
27 4 0.07
28 35 0.60
29 19 0.33
ACGTcount: A:0.47, C:0.00, G:0.30, T:0.23
Consensus pattern (28 bp):
GATGAAAAGAGTTTGAAGAAAAGAGTTT
Found at i:765708 original size:16 final size:15
Alignment explanation
Indices: 765687--765716 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
765677 ATTGGCCTAA
765687 CAAGATCAAGGTTCAT
1 CAAGATCAA-GTTCAT
765703 CAAGATCAAGTTCA
1 CAAGATCAAGTTCA
765717 AGAGGATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (15 bp):
CAAGATCAAGTTCAT
Found at i:769665 original size:20 final size:19
Alignment explanation
Indices: 769642--769716 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 19
769632 AAGTACCAAG
769642 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTT-A
*
769662 ATGTATCGATACATATATTA
1 ATGTATCGATACAT-TTTTA
* *
769682 ATGTATCGATACATGTATGA
1 ATGTATCGATACAT-TTTTA
769702 ATGTATCGATACATT
1 ATGTATCGATACATT
769717 GTTCTGTCTT
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
19 1 0.02
20 47 0.92
21 3 0.06
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (19 bp):
ATGTATCGATACATTTTTA
Found at i:777296 original size:13 final size:13
Alignment explanation
Indices: 777278--777303 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
777268 TACACCAAGT
777278 ATGTATCGATACA
1 ATGTATCGATACA
777291 ATGTATCGATACA
1 ATGTATCGATACA
777304 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:777301 original size:32 final size:33
Alignment explanation
Indices: 777260--777323 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
777250 TAGCCAAACT
* **
777260 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
777292 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
777324 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:779328 original size:57 final size:56
Alignment explanation
Indices: 779051--779809 Score: 804
Period size: 57 Copynumber: 13.3 Consensus size: 56
779041 TGTTCATATC
* * *
779051 TTCAAAGCCCACAAGTTAGTGGCAACCTTTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATTCT
* * * * *
779107 TTCAAAGCCCACAAGTCTGTGGTATCCTTTCAAAGCCCACGAGTCGGTGGCAACTTTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC-A-TTCT
* * * * * * **
779165 TTCAAAGCCCATAAGTCAATAGCATCCTTTCGAAGCCCACGAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATTCT
* *
779221 TTGAAAGCCCACAAGTCAGTGGCATTCTTTCAAAGCCCACAAGTCAGTGGCATTCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATTCT
*
779277 TTCAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCCCACAAGTCAGTGGCATTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGTCAGTGGCATTC-T
* * *
779335 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGACCATAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATTC-T
* * * *
779392 TTCAAAGCCCATAAG-CTAGTGGTAACTCCTTTCAAAGCCCACATGAGTCGGTGGCAACTCTT
1 TTCAAAGCCCACAAGTC-AGTGG-CA-TCCTTTCAAAGCCCACA--AGTCAGTGGC-ATTC-T
* * *
779454 TTCAAAGCCCACAAGTCAGCGGCACCCTTTCAAAGCCCACAAGTCAATGGCACTAT-T
1 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-T-TCT
* * * *
779511 TTCAAAGCCCACAAGTCTGTGGCATCCTTTTAAAGCCCACAAGTCAATGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATTCT
* ** * * * *
779567 TTCAAACCCCATGAGTCGGTGGCAACTCTTTTCAAAGCTCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGC-A-TCCTTTCAAAGCCCACAAGTCAGTGGCATTCT
** * * * **
779625 TTCAAAGCCCATGAGTTAGTGGCA-CCATTTCAGAGCCCACCAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATTCT
* * * * **
779681 TTTAATGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGTCAGTGGCATTCT
* * * * *
779738 TTCAAAGTCCACAAGTCAATGGCATTCTTTTCAAAGCCCACAACTTAGTGGCATTCT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGTCAGTGGCATTCT
779795 TTCAAAGCCCACAAG
1 TTCAAAGCCCACAAG
779810 CTAGTGGTAA
Statistics
Matches: 597, Mismatches: 87, Indels: 37
0.83 0.12 0.05
Matches are distributed among these distances:
55 1 0.00
56 182 0.30
57 219 0.37
58 128 0.21
59 16 0.03
60 16 0.03
61 10 0.02
62 24 0.04
63 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (56 bp):
TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATTCT
Found at i:779816 original size:28 final size:28
Alignment explanation
Indices: 779051--779809 Score: 820
Period size: 28 Copynumber: 26.5 Consensus size: 28
779041 TGTTCATATC
* *
779051 TTCAAAGCCCACAAGTTAGTGGCAACCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
779079 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
779107 TTCAAAGCCCACAAGTCTGTGGTATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * **
779135 TTCAAAGCCCACGAGTCGGTGGCAACTTTT
1 TTCAAAGCCCACAAGTCAGTGGC-A-TCCT
* * *
779165 TTCAAAGCCCATAAGTCAATAGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * * *
779193 TTCGAAGCCCACGAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
779221 TTGAAAGCCCACAAGTCAGTGGCATTCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
779249 TTCAAAGCCCACAAGTCAGTGGCATTCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
779277 TTCAAAGCCCACAAGTCAGTGGCACCCCT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCT
*
779306 TTCAAAGCCCACAAGTCAGTGGCATTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCT
779335 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
779363 TTCAAAGACCATAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCT
* *
779392 TTCAAAGCCCATAAG-CTAGTGGTAACTCCT
1 TTCAAAGCCCACAAGTC-AGTGG-CA-TCCT
* *
779422 TTCAAAGCCCACATGAGTCGGTGGCAACTCTT
1 TTCAAAGCCCACA--AGTCAGTGGC-A-TCCT
* *
779454 TTCAAAGCCCACAAGTCAGCGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* **
779482 TTCAAAGCCCACAAGTCAATGGCACTATT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCT
*
779511 TTCAAAGCCCACAAGTCTGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
779539 TTTAAAGCCCACAAGTCAATGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* ** * *
779567 TTCAAACCCCATGAGTCGGTGGCAACTCTT
1 TTCAAAGCCCACAAGTCAGTGGC-A-TCCT
*
779597 TTCAAAGCTCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
** *
779625 TTCAAAGCCCATGAGTTAGTGGCA-CCAT
1 TTCAAAGCCCACAAGTCAGTGGCATCC-T
* * *
779653 TTCAGAGCCCACCAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * * *
779681 TTTAATGCCCACAAGTTAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCT
*
779710 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
779738 TTCAAAGTCCACAAGTCAATGGCATTCTT
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCT
* * *
779767 TTCAAAGCCCACAACTTAGTGGCATTCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
779795 TTCAAAGCCCACAAG
1 TTCAAAGCCCACAAG
779810 CTAGTGGTAA
Statistics
Matches: 608, Mismatches: 106, Indels: 34
0.81 0.14 0.05
Matches are distributed among these distances:
27 2 0.00
28 366 0.60
29 149 0.25
30 66 0.11
32 24 0.04
33 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCATCCT
Found at i:786770 original size:18 final size:18
Alignment explanation
Indices: 786747--786782 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
786737 TTGACATTAA
786747 GGTACTCGATAACAGCTT
1 GGTACTCGATAACAGCTT
786765 GGTACTCGATAACAGCTT
1 GGTACTCGATAACAGCTT
786783 AAGGCTCGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (18 bp):
GGTACTCGATAACAGCTT
Found at i:787199 original size:156 final size:152
Alignment explanation
Indices: 786860--787259 Score: 383
Period size: 156 Copynumber: 2.6 Consensus size: 152
786850 AAGTCTAAGG
* * *
786860 AAAATTATGAAAATGCCCTAAGGGGATATCTTGGACGTAAAAG-CACTTAATACCCCTAAAGGAC
1 AAAATTATGAAAATGCCCTAAGGGGATATCTTCGACGTAAAAGTC-C-TAATATCCCTAAAGAAC
* * * *
786924 TTAAAAAGGATTATGGATGGGATGAACCTATCCTAAATACCCATCTTCGAAAAAAAGCAGACTCG
64 TTAAAAAAGATTATGAATGGGATGAACCTATCCGAAATACCCATCTTCGAAAAAAAGCAGACCCG
* * *
786989 GTAACAACCTAGGACTCGATTTTAA
129 ATAACAACCTAAGACTCGATTCT-A
** * ** * * * *
787014 AAAATTACCAAAATACCCCGAGGGAATATCTTCGATGTAAAAGTGCCTGATATCCCTAAAAAACT
1 AAAATTATGAAAATGCCCTAAGGGGATATCTTCGACGTAAAAGT-CCTAATATCCCTAAAGAACT
** * * * *
787079 TAAAAAAGATTA-GAAAATGGGATGAACCTATCCGAAATATTCACTTTTGGTATAAAAGCAGACC
65 TAAAAAAGATTATG--AATGGGATGAACCTATCCGAAATACCCA-TCTTCGAAAAAAAGCAGACC
* *
787143 CGATAATAACCTAAGACTCGGTTCTA
127 CGATAACAACCTAAGACTCGATTCTA
* * * * *
787169 AAAATTTATGAAAATGCCCTTAGGGGATATCTCCGACATAAAAGTACTTAGTATCCCTAAAGAAC
1 AAAA-TTATGAAAATGCCCTAAGGGGATATCTTCGACGTAAAAGT-CCTAATATCCCTAAAGAAC
* * *
787234 TTGAAAAAGA-TATGTATGGGGTGAAC
64 TTAAAAAAGATTATGAATGGGATGAAC
787260 TGATCCTAAA
Statistics
Matches: 195, Mismatches: 44, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
153 1 0.01
154 70 0.36
155 32 0.16
156 92 0.47
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.24
Consensus pattern (152 bp):
AAAATTATGAAAATGCCCTAAGGGGATATCTTCGACGTAAAAGTCCTAATATCCCTAAAGAACTT
AAAAAAGATTATGAATGGGATGAACCTATCCGAAATACCCATCTTCGAAAAAAAGCAGACCCGAT
AACAACCTAAGACTCGATTCTA
Found at i:787954 original size:10 final size:11
Alignment explanation
Indices: 787931--787970 Score: 57
Period size: 10 Copynumber: 3.7 Consensus size: 11
787921 AAGAAAAGAA
787931 TTTATTTATTAT
1 TTTA-TTATTAT
787943 TTTATT-TTAT
1 TTTATTATTAT
787953 TTTATTATTAT
1 TTTATTATTAT
787964 TTT-TTAT
1 TTTATTAT
787971 ATCTGAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 14 0.52
11 9 0.33
12 4 0.15
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTATTATTAT
Found at i:787958 original size:18 final size:18
Alignment explanation
Indices: 787931--787970 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
787921 AAGAAAAGAA
787931 TTTA-TTTATTATT-TTAT
1 TTTATTTTATTATTATT-T
787948 TTTATTTTATTATTATTT
1 TTTATTTTATTATTATTT
787966 TTTAT
1 TTTAT
787971 ATCTGAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.19
18 15 0.71
19 2 0.10
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTATTTTATTATTATTT
Found at i:789770 original size:35 final size:32
Alignment explanation
Indices: 789730--789808 Score: 86
Period size: 35 Copynumber: 2.4 Consensus size: 32
789720 TGTTTTTACA
*
789730 TTTTTCTTTTTCTGTGCTATTTCATTTATTTCTT
1 TTTTTCTTTTTCTGTGCTATTTCA-AT-TTTCTT
* * * *
789764 TGTTTTCTTTTTTTTTGCTGTTTCAATTTTGTT
1 T-TTTTCTTTTTCTGTGCTATTTCAATTTTCTT
789797 TTTTTCTTTTTC
1 TTTTTCTTTTTC
789809 CCCCCCTGCT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
32 10 0.26
33 6 0.16
34 2 0.05
35 20 0.53
ACGTcount: A:0.06, C:0.13, G:0.08, T:0.73
Consensus pattern (32 bp):
TTTTTCTTTTTCTGTGCTATTTCAATTTTCTT
Found at i:790236 original size:17 final size:16
Alignment explanation
Indices: 790210--790244 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 16
790200 CCGAATAATC
790210 AAATCATGAAGGTATG
1 AAATCATGAAGGTATG
790226 AAATGCATGAAGGTATG
1 AAAT-CATGAAGGTATG
790243 AA
1 AA
790245 GGCATGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.46, C:0.06, G:0.26, T:0.23
Consensus pattern (16 bp):
AAATCATGAAGGTATG
Found at i:790251 original size:25 final size:26
Alignment explanation
Indices: 790215--790269 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 26
790205 TAATCAAATC
*
790215 ATGAAGGTATGAAATGCAT-GAAGGT
1 ATGAAGGCATGAAATGCATGGAAGGT
*
790240 ATGAAGGCATGAAATGCATGGAATGT
1 ATGAAGGCATGAAATGCATGGAAGGT
790266 ATGA
1 ATGA
790270 TTTTTCTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 18 0.67
26 9 0.33
ACGTcount: A:0.40, C:0.05, G:0.31, T:0.24
Consensus pattern (26 bp):
ATGAAGGCATGAAATGCATGGAAGGT
Found at i:795369 original size:10 final size:10
Alignment explanation
Indices: 795346--795380 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
795336 ATGATGAGGA
* *
795346 AATTGATACT
1 AATTGTTACC
795356 AATTGTTACC
1 AATTGTTACC
795366 AATTGTTACC
1 AATTGTTACC
795376 AATTG
1 AATTG
795381 ATGAATGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.40
Consensus pattern (10 bp):
AATTGTTACC
Found at i:800377 original size:22 final size:22
Alignment explanation
Indices: 800351--800423 Score: 110
Period size: 22 Copynumber: 3.3 Consensus size: 22
800341 TACCATTCAC
800351 ATGTATCGATACATGAACAGTG
1 ATGTATCGATACATGAACAGTG
*
800373 ATGTATCGATACATGAATAGTG
1 ATGTATCGATACATGAACAGTG
* **
800395 ATGTATCGATCCATGAACAGCA
1 ATGTATCGATACATGAACAGTG
800417 ATGTATC
1 ATGTATC
800424 AATTTAAAAG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.29
Consensus pattern (22 bp):
ATGTATCGATACATGAACAGTG
Found at i:802554 original size:20 final size:20
Alignment explanation
Indices: 802508--802561 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
802498 TGTTAGGACA
** * *
802508 ATGTATCGATACTTTTTACT
1 ATGTATCGATACAATATACC
*
802528 ATATATCGATACAATATACC
1 ATGTATCGATACAATATACC
802548 ATGTATCGATACAA
1 ATGTATCGATACAA
802562 ATAGTGGTAG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATATACC
Found at i:802653 original size:33 final size:32
Alignment explanation
Indices: 802593--802655 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 32
802583 CCAGTTTATG
* *
802593 TATCGATACAATGAACATGTATTGATACATTA
1 TATCGATACAAAGAACATGTATCGATACATTA
802625 TATCGATACAAAGCATA-ATGTATCGATACAT
1 TATCGATACAAAG-A-ACATGTATCGATACAT
802656 CTAGATGTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 12 0.44
33 14 0.52
34 1 0.04
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (32 bp):
TATCGATACAAAGAACATGTATCGATACATTA
Found at i:802851 original size:23 final size:23
Alignment explanation
Indices: 802825--802871 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
802815 TGATATTGAA
802825 AATCACTTAGAACAAGGTTTTAG
1 AATCACTTAGAACAAGGTTTTAG
802848 AATCACTTAGAACAAGGTTTTAG
1 AATCACTTAGAACAAGGTTTTAG
802871 A
1 A
802872 GTATTTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (23 bp):
AATCACTTAGAACAAGGTTTTAG
Found at i:815505 original size:155 final size:154
Alignment explanation
Indices: 815345--815767 Score: 401
Period size: 154 Copynumber: 2.7 Consensus size: 154
815335 CTTATAGATA
* *
815345 AGATGAACCTATCCTAAATACCCACCTTCGGCATAAAATTGGACCC-GATGACAACCTAGGAGTT
1 AGATGAACCTATCCTAAATACCCACCTTCGGCATAAAA-TGGACCCAG-TAACAACCTAGGAATT
* * *
815409 GGTTCTAGAAAATTATGAAGATGCCCCTAGGGGATACCTTAGACATAGTAA-TACTCAATGCCCT
64 GGTTCTAGAAAATTATGAAAATGCCCCTAGGGGATACCTTAGACATAGAAAGTACTCAATACCCT
* * *
815473 TAAAAGACTAA-AAAAGGATTTTAACGGT
129 T-AAAGA-AAATAAAAAGATTTTAA-AGT
* * * ** * **
815501 -GATGAAACTATCCTCAATATCCACCTTCATCATAAAA-GCGAACCTAGTAATGA-CTAGGAATT
1 AGATGAACCTATCCTAAATACCCACCTTCGGCATAAAATG-G-ACCCAGTAACAACCTAGGAATT
* * * * ** **
815563 AGTTCTAAAAAATTATGAAAATGCCCCTAGGAGATACCTTCGATGTA-AAAGTACTTGATACCCT
64 GGTTCTAGAAAATTATGAAAATGCCCCTAGGGGATACCTTAGACATAGAAAGTACTCAATACCCT
*
815627 TAAAGAAAATAAAAAGATTTTAAATT
129 TAAAGAAAATAAAAAGATTTTAAAGT
* * * *
815653 AGATGAACCTACCCTAAATACCCACCTTTGGCATAAAAGTAGACCCAGTAACAACCTAGGACTTG
1 AGATGAACCTATCCTAAATACCCACCTTCGGCATAAAA-TGGACCCAGTAACAACCTAGGAATTG
* ** * * *
815718 ATTCTAGAGAAATTACAAAAATGCCCCTAGAGGATACTTTTGACATAGAA
65 GTTCTAGA-AAATTATGAAAATGCCCCTAGGGGATACCTTAGACATAGAA
815768 GTATCCGGTA
Statistics
Matches: 208, Mismatches: 48, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
152 3 0.01
153 59 0.28
154 75 0.36
155 68 0.33
156 3 0.01
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (154 bp):
AGATGAACCTATCCTAAATACCCACCTTCGGCATAAAATGGACCCAGTAACAACCTAGGAATTGG
TTCTAGAAAATTATGAAAATGCCCCTAGGGGATACCTTAGACATAGAAAGTACTCAATACCCTTA
AAGAAAATAAAAAGATTTTAAAGT
Found at i:815795 original size:155 final size:155
Alignment explanation
Indices: 815246--815796 Score: 430
Period size: 155 Copynumber: 3.6 Consensus size: 155
815236 AGCGATGACA
* * *
815246 TAGGACTCGATTCT-AGAAATTACAAAAAAGCCCCTATAGGTATACCTTCGACAT-GAAAGTA-T
1 TAGGACTTGATTCTAAGAAATTACAAAAATGCCCCTAGAGG-ATACCTTCGACATAGAAAGTACT
* * * * * *
815308 CCTGGTAACCTTAAAAGACTTAAAAAGCTTATAGATAAGATGAACCTATCCTAAATACCCACCTT
65 -C-GATACCCTTAAAAGACTTAAAAAGATTTTAAATTAGATGAACCTATCCTAAATACCCACCTT
* * *
815373 CGGCATAAAATTGGACCC-GATGACAACC
128 CGGCATAAAAGTAGACCCAG-TAACAACC
* * ** * * * *
815401 TAGGAGTTGGTTCT-AGAAAATTATGAAGATGCCCCTAGGGGATACCTTAGACATAGTAA-TACT
1 TAGGACTTGATTCTAAG-AAATTACAAAAATGCCCCTAGAGGATACCTTCGACATAGAAAGTACT
* * * ** * * *
815464 CAATGCCCTTAAAAGACTAAAAAAGGATTTTAACGGT-GATGAAACTATCCTCAATATCCACCTT
65 CGATACCCTTAAAAGACTTAAAAA-GATTTTAA-ATTAGATGAACCTATCCTAAATACCCACCTT
** * * **
815528 CATCATAAAAG-CGAACCTAGTAATGA-C
128 CGGCATAAAAGTAG-ACCCAGTAACAACC
* * ** **
815555 TAGGAATT-AGTTCTAAAAAATTATGAAAATGCCCCTAG-GAGATACCTTCGATGTA-AAAGTAC
1 TAGGACTTGA-TTCTAAGAAATTACAAAAATGCCCCTAGAG-GATACCTTCGACATAGAAAGTAC
* ** *
815617 TTGATACCCTT-AAAGAAAATAAAAAGATTTTAAATTAGATGAACCTACCCTAAATACCCACCTT
64 TCGATACCCTTAAAAG-ACTTAAAAAGATTTTAAATTAGATGAACCTATCCTAAATACCCACCTT
*
815681 TGGCATAAAAGTAGACCCAGTAACAACC
128 CGGCATAAAAGTAGACCCAGTAACAACC
* *
815709 TAGGACTTGATTCTAGAGAAATTACAAAAATGCCCCTAGAGGATACTTTTGACATAG-AAGTA-T
1 TAGGACTTGATTCTA-AGAAATTACAAAAATGCCCCTAGAGGATACCTTCGACATAGAAAGTACT
* * *
815772 CCGGTACCCTTAAGAGATTTAAAAA
65 -CGATACCCTTAAAAGACTTAAAAA
815797 CGTGAGGTAA
Statistics
Matches: 302, Mismatches: 73, Indels: 42
0.72 0.18 0.10
Matches are distributed among these distances:
152 1 0.00
153 55 0.18
154 95 0.31
155 124 0.41
156 27 0.09
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.25
Consensus pattern (155 bp):
TAGGACTTGATTCTAAGAAATTACAAAAATGCCCCTAGAGGATACCTTCGACATAGAAAGTACTC
GATACCCTTAAAAGACTTAAAAAGATTTTAAATTAGATGAACCTATCCTAAATACCCACCTTCGG
CATAAAAGTAGACCCAGTAACAACC
Found at i:817635 original size:4 final size:4
Alignment explanation
Indices: 817626--817656 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
817616 TAAATACAAG
817626 ATAA ATAA ATAA ATAA ATAA ATAAA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA AT-AA ATAA AT
817657 TTAAAATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:817643 original size:12 final size:13
Alignment explanation
Indices: 817616--817656 Score: 57
Period size: 12 Copynumber: 3.1 Consensus size: 13
817606 CTTAGCCAAT
817616 TAAATACAAGATAAA
1 TAAATA-AA-ATAAA
817631 TAAAT-AAATAAA
1 TAAATAAAATAAA
817643 TAAATAAAATAAA
1 TAAATAAAATAAA
817656 T
1 T
817657 TTAAAATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 10 0.40
13 10 0.40
15 5 0.20
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (13 bp):
TAAATAAAATAAA
Found at i:818042 original size:168 final size:168
Alignment explanation
Indices: 817859--818280 Score: 467
Period size: 168 Copynumber: 2.5 Consensus size: 168
817849 TTAATGGCAG
* * ** * *
817859 TATTAGATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCCCAAAAACATTTACGGAGTAGA
1 TATTTGATAAATTTTAAAAATTAAAAACTGAGAAAAATCCTCCCCAAAAACATTTATGAAGTAGA
* * **
817924 AAACTTTGTATTTTAGAAACAAG-GAAATTTCAAGTAAAAAAATGAAAAA-TGAATGAAAATGAA
66 AAACTTTGTATTTTAAAAACAAGAG-AATTTCAAGGAAAAAAACAAAAAACT-AATGAAAATGAA
* *
817987 TGAATTTTTGAAAATTGACTTAATATGAATTAAATAATAA
129 TGAATTTTTGAAAACTAACTTAATATGAATTAAATAATAA
* *
818027 TATTTTATAAATTTTAAAAATTAAAAACTGAGAAAAATCC-CCCTAAAAACATTTATGAAGTAGA
1 TATTTGATAAATTTTAAAAATTAAAAACTGAGAAAAATCCTCCCCAAAAACATTTATGAAGTAG-
*** ** * ** *
818091 AAAACTCCATATTTTATTAATAAGAGAATTTTGAGGAAAAAAACAAAAAACTTATGAAAATGAAT
65 AAAACTTTGTATTTTAAAAACAAGAGAATTTCAAGGAAAAAAACAAAAAACTAATGAAAATGAAT
* * * *
818156 GAATTTTTGATAACTAATTTGATATGAATTAAATGATAA
130 GAATTTTTGAAAACTAACTTAATATGAATTAAATAATAA
* * * * * *
818195 TATTTGATGAATTTTATAAACTAAAAATTGAGAAAAATCAT-CCCAAAAATATTTATGAAGTA-A
1 TATTTGATAAATTTTAAAAATTAAAAACTGAGAAAAATCCTCCCCAAAAACATTTATGAAGTAGA
*
818258 AAAATTTGATATTTTAAAAACAA
66 AAACTTTG-TATTTTAAAAACAA
818281 TCGAAATTCT
Statistics
Matches: 208, Mismatches: 41, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
166 5 0.02
167 31 0.15
168 170 0.82
169 2 0.01
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.31
Consensus pattern (168 bp):
TATTTGATAAATTTTAAAAATTAAAAACTGAGAAAAATCCTCCCCAAAAACATTTATGAAGTAGA
AAACTTTGTATTTTAAAAACAAGAGAATTTCAAGGAAAAAAACAAAAAACTAATGAAAATGAATG
AATTTTTGAAAACTAACTTAATATGAATTAAATAATAA
Found at i:825167 original size:15 final size:15
Alignment explanation
Indices: 825147--825177 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
825137 ATTTCGTTTG
*
825147 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
825162 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
825177 G
1 G
825178 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:827009 original size:21 final size:21
Alignment explanation
Indices: 826980--827024 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
826970 AAGTTTTCAT
*
826980 TTTTCTTAGCTAA-TTCATTA
1 TTTTCTTAGCCAACTTCATTA
*
827000 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
827022 TTT
1 TTT
827025 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 7 0.33
22 9 0.43
ACGTcount: A:0.22, C:0.18, G:0.04, T:0.56
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:829262 original size:13 final size:13
Alignment explanation
Indices: 829244--829269 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
829234 CAATTTTTTG
829244 TGTATCGATACAT
1 TGTATCGATACAT
829257 TGTATCGATACAT
1 TGTATCGATACAT
829270 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:830056 original size:3 final size:3
Alignment explanation
Indices: 830048--830074 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
830038 ATTTACATCT
830048 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
830075 CTACTACTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:831637 original size:13 final size:13
Alignment explanation
Indices: 831619--831644 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
831609 ACATTTTATG
831619 ATGTATCGATACA
1 ATGTATCGATACA
831632 ATGTATCGATACA
1 ATGTATCGATACA
831645 TACTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:831639 original size:33 final size:32
Alignment explanation
Indices: 831597--831664 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
831587 CGTTACAAGC
**
831597 CAATGTATCGATACATTTTATGATGTATCGATA
1 CAATGTATCGATACATACTATG-TGTATCGATA
*
831630 CAATGTATCGATACATACTGTGTGTATCGATA
1 CAATGTATCGATACATACTATGTGTATCGATA
831662 CAA
1 CAA
831665 GTTTGGCTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (32 bp):
CAATGTATCGATACATACTATGTGTATCGATA
Found at i:831744 original size:20 final size:21
Alignment explanation
Indices: 831696--831748 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
831686 GCTAATGACT
**
831696 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
**
831717 ACTATCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
831737 TGTATCGATACA
1 TGTATCGATACA
831749 ATGTATCGAT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:831754 original size:13 final size:13
Alignment explanation
Indices: 831736--831764 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
831726 ACATTTGGTC
831736 ATGTATCGATACA
1 ATGTATCGATACA
831749 ATGTATCGATACA
1 ATGTATCGATACA
831762 ATG
1 ATG
831765 CAATCTGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:832296 original size:22 final size:21
Alignment explanation
Indices: 832254--832297 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
832244 TTTTCTTTTC
*
832254 TCTCCCCCTTAATCAAAAATT
1 TCTCCCCCTTAATAAAAAATT
*
832275 TCTCCCCCTTAGTAAAATAATT
1 TCTCCCCCTTAATAAAA-AATT
832297 T
1 T
832298 GACAATTTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.32, C:0.30, G:0.02, T:0.36
Consensus pattern (21 bp):
TCTCCCCCTTAATAAAAAATT
Found at i:833701 original size:21 final size:21
Alignment explanation
Indices: 833671--833721 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
833661 GCTACTAGTG
* *
833671 TGGGGCTGCCCAGTTGCGACC
1 TGGGGGTGCCCAGTCGCGACC
*
833692 TGGGGGTG-CCGGTCGCGACC
1 TGGGGGTGCCCAGTCGCGACC
833712 TGGTGGGTGC
1 TGG-GGGTGC
833722 TGCCTAGGAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.06, C:0.27, G:0.47, T:0.20
Consensus pattern (21 bp):
TGGGGGTGCCCAGTCGCGACC
Found at i:834174 original size:13 final size:13
Alignment explanation
Indices: 834156--834180 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
834146 ATAAACCCCT
834156 TGTATCGATACAC
1 TGTATCGATACAC
834169 TGTATCGATACA
1 TGTATCGATACA
834181 GAGAATGCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:840407 original size:20 final size:21
Alignment explanation
Indices: 840355--840408 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
840345 TATCAATACA
**
840355 ATGTATCGATACATTCTTTTC
1 ATGTATCGATACATTCTGGTC
*
840376 AAGTATCGATACATT-TGGTC
1 ATGTATCGATACATTCTGGTC
*
840396 ATGTATCAATACA
1 ATGTATCGATACA
840409 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (21 bp):
ATGTATCGATACATTCTGGTC
Found at i:842656 original size:13 final size:13
Alignment explanation
Indices: 842638--842694 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
842628 TTCAACAATT
842638 TGTATCGATACAA
1 TGTATCGATACAA
842651 TGTATCGATACATAA
1 TGTATCGATAC--AA
842666 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
842683 TGTATCGATACA
1 TGTATCGATACA
842695 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:842675 original size:19 final size:18
Alignment explanation
Indices: 842651--842713 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
842641 ATCGATACAA
842651 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
842670 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
842683 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
842702 TGTATCGATACA
1 TGTATCGATACA
842714 ATGTATCGCT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
15 2 0.05
17 2 0.05
19 23 0.61
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:842678 original size:32 final size:32
Alignment explanation
Indices: 842637--842721 Score: 161
Period size: 32 Copynumber: 2.7 Consensus size: 32
842627 TTTCAACAAT
842637 TTGTATCGATACAATGTATCGATACATAAGTG
1 TTGTATCGATACAATGTATCGATACATAAGTG
*
842669 TTGTATCGATACAATGTATCGATACATAAGTT
1 TTGTATCGATACAATGTATCGATACATAAGTG
842701 TTGTATCGATACAATGTATCG
1 TTGTATCGATACAATGTATCG
842722 CTACGAAGCT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 52 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (32 bp):
TTGTATCGATACAATGTATCGATACATAAGTG
Found at i:847132 original size:49 final size:50
Alignment explanation
Indices: 847041--847156 Score: 162
Period size: 49 Copynumber: 2.3 Consensus size: 50
847031 CTCCACAATT
* *
847041 TGTATCGATACATTCTATTTTTTTACCCAGATTTATCGATACATTTTTCAA
1 TGTATCGATACA-TCTATTTTTTTACCCAGATGTATCAATACATTTTTCAA
* * *
847092 TGTATCAATACAT-TATTTTTTTACCTAGATGTATTAATACATTTTTCAA
1 TGTATCGATACATCTATTTTTTTACCCAGATGTATCAATACATTTTTCAA
*
847141 TATATCGATACATCTA
1 TGTATCGATACATCTA
847157 GTTAATTTTG
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
49 43 0.75
50 3 0.05
51 11 0.19
ACGTcount: A:0.31, C:0.16, G:0.07, T:0.47
Consensus pattern (50 bp):
TGTATCGATACATCTATTTTTTTACCCAGATGTATCAATACATTTTTCAA
Found at i:849012 original size:79 final size:76
Alignment explanation
Indices: 848832--849096 Score: 280
Period size: 80 Copynumber: 3.3 Consensus size: 76
848822 TTTTGGAGAT
* * * * *
848832 AATAATGGGGCTGGAGTATCCCTGATTATGGAAAATCGGTGTTCTAAAAATAAAAATTGGGGTTA
1 AATAATGGGGTTGGAGTATCCCCGATTAT-GAAAATCGATGTT-TTAAAAT-AAAATTGGGGTTG
848897 GAGTATCCCCTCAGA
63 GAGTATCCCCT-AGA
* * *
848912 AAAAATAGGGTTGGAGTATCCCCGATTATAGAAAATCGATGTTTTGAAAATAAAATTGGGATTGG
1 AATAATGGGGTTGGAGTATCCCCGATTAT-GAAAATCGATGTTTT-AAAATAAAATTGGGGTTGG
848977 AGTATCCCCGT-GA
64 AGTATCCCC-TAGA
* * * * * *
848990 AGATAATGGGGTTGGAGTATCCCCCTATTGTGAGAAATCAATATTTTAGAAACAAAGTTGGGGTT
1 A-ATAATGGGGTTGGAGTAT-CCCCGATTATGA-AAATCGATGTTTTA-AAATAAAATTGGGGTT
849055 GGAGTATCCCCTCAGA
62 GGAGTATCCCCT-AGA
*
849071 AATAACGGGGTTGGAGTATCCCCGAT
1 AATAATGGGGTTGGAGTATCCCCGAT
849097 GAAATAACGG
Statistics
Matches: 157, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.02
79 48 0.31
80 103 0.66
81 3 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (76 bp):
AATAATGGGGTTGGAGTATCCCCGATTATGAAAATCGATGTTTTAAAATAAAATTGGGGTTGGAG
TATCCCCTAGA
Found at i:849081 original size:28 final size:28
Alignment explanation
Indices: 849049--849121 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
849039 AAACAAAGTT
849049 GGGGTTGGAGTATCCCCTCA-GAAATAAC
1 GGGGTTGGAGTATCCCC-CATGAAATAAC
*
849077 GGGGTTGGAGTATCCCCGATGAAATAAC
1 GGGGTTGGAGTATCCCCCATGAAATAAC
849105 GGGGTTGGAGTATCCCC
1 GGGGTTGGAGTATCCCC
849122 AATTGTAAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
27 1 0.02
28 42 0.98
ACGTcount: A:0.25, C:0.21, G:0.33, T:0.22
Consensus pattern (28 bp):
GGGGTTGGAGTATCCCCCATGAAATAAC
Found at i:849178 original size:51 final size:51
Alignment explanation
Indices: 849108--849221 Score: 192
Period size: 51 Copynumber: 2.2 Consensus size: 51
849098 AAATAACGGG
*
849108 GTTGGAGTATCCCCAATTGTAAAAAATTGATGTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCAATTGTAAAAAATTGATGTTTTAGAAATAAAATCGGA
* * *
849159 GTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAATCGGG
1 GTTGGAGTATCCCCAATTGTAAAAAATTGATGTTTTAGAAATAAAATCGGA
849210 GTTGGAGTATCC
1 GTTGGAGTATCC
849222 TCTTGAAAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.32
Consensus pattern (51 bp):
GTTGGAGTATCCCCAATTGTAAAAAATTGATGTTTTAGAAATAAAATCGGA
Found at i:849248 original size:130 final size:129
Alignment explanation
Indices: 849076--849426 Score: 483
Period size: 130 Copynumber: 2.7 Consensus size: 129
849066 TCAGAAATAA
* * * *
849076 CGGGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGTATCCCCAATTGTAAAAAATTGATGT
1 CGGGGTTGGAGTATCCCC-TTGAAATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATTGATGT
849141 TTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTG-TGAAAAATTGATGTTTTAGAAATAAAA
65 TTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTGTTG-AAAATTGATGTTTTAGAAATAAAA
*
849205 T
129 C
* * * * *
849206 CGGGGTTGGAGTATCCTCTTGAAAATAACGGGGTTAGAGTATCTCCGATGGTGGAAAATCGATGT
1 CGGGGTTGGAGTATCCCCTTG-AAATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATTGATGT
*
849271 TTTGGAAATAAAATC-GAGGTTGGAGTATCCCTGATTGTTGAAAATTGATGTTTTAGAAATAAAA
65 TTTGGAAATAAAATCGGA-GTTGGAGTATCCCCGATTGTTGAAAATTGATGTTTTAGAAATAAAA
849335 C
129 C
* *
849336 CAGGGTTGGAGTATCCCCTTGGAAATAACGGGGTTAGAGTATCCCCGATTATGAAAAATTGATGT
1 CGGGGTTGGAGTATCCCCTT-GAAATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATTGATGT
** *
849401 TTTAAAAATAAAA-CTGGGGTTGGAGT
65 TTTGGAAATAAAATC-GGAGTTGGAGT
849427 TTGAAAAAAA
Statistics
Matches: 194, Mismatches: 21, Indels: 12
0.85 0.09 0.05
Matches are distributed among these distances:
129 5 0.03
130 185 0.95
131 4 0.02
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.30
Consensus pattern (129 bp):
CGGGGTTGGAGTATCCCCTTGAAATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATTGATGTT
TTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTGTTGAAAATTGATGTTTTAGAAATAAAAC
Found at i:849314 original size:51 final size:50
Alignment explanation
Indices: 849236--849352 Score: 146
Period size: 51 Copynumber: 2.3 Consensus size: 50
849226 GAAAATAACG
* * *
849236 GGGTTAGAGTATCTCCGATGGTGGAAAATCGATGTTTTGGAAATAAAATC-
1 GGGTTGGAGTATC-CCGATGGTGGAAAATCGATGTTTTAGAAATAAAACCA
* * *
849286 GAGGTTGGAGTATCCCTGATTGTTGAAAATTGATGTTTTAGAAATAAAACCA
1 G-GGTTGGAGTATCCC-GATGGTGGAAAATCGATGTTTTAGAAATAAAACCA
849338 GGGTTGGAGTATCCC
1 GGGTTGGAGTATCCC
849353 CTTGGAAATA
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
50 3 0.05
51 54 0.93
52 1 0.02
ACGTcount: A:0.31, C:0.11, G:0.27, T:0.31
Consensus pattern (50 bp):
GGGTTGGAGTATCCCGATGGTGGAAAATCGATGTTTTAGAAATAAAACCA
Found at i:851619 original size:20 final size:20
Alignment explanation
Indices: 851594--851680 Score: 98
Period size: 20 Copynumber: 4.7 Consensus size: 20
851584 GTAAACCCAG
*
851594 AATGTATCAATACAATCAAC
1 AATGTATCGATACAATCAAC
851614 AATGTATCG-----AT--AC
1 AATGTATCGATACAATCAAC
851627 AATGTATCGATACAATCAAC
1 AATGTATCGATACAATCAAC
* *
851647 AATGTATCGATATAATGAAC
1 AATGTATCGATACAATCAAC
851667 AATGTATCGATACA
1 AATGTATCGATACA
851681 TCTGGGTAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
13 11 0.20
15 2 0.04
18 2 0.04
20 41 0.73
ACGTcount: A:0.45, C:0.16, G:0.11, T:0.28
Consensus pattern (20 bp):
AATGTATCGATACAATCAAC
Found at i:851630 original size:13 final size:13
Alignment explanation
Indices: 851612--851642 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
851602 AATACAATCA
851612 ACAATGTATCGAT
1 ACAATGTATCGAT
851625 ACAATGTATCGAT
1 ACAATGTATCGAT
851638 ACAAT
1 ACAAT
851643 CAACAATGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (13 bp):
ACAATGTATCGAT
Found at i:851631 original size:33 final size:33
Alignment explanation
Indices: 851594--851663 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
851584 GTAAACCCAG
851594 AATGTATCAATACAATCAACAATGTATCGATAC
1 AATGTATCAATACAATCAACAATGTATCGATAC
* *
851627 AATGTATCGATACAATCAACAATGTATCGATAT
1 AATGTATCAATACAATCAACAATGTATCGATAC
851660 AATG
1 AATG
851664 AACAATGTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.29
Consensus pattern (33 bp):
AATGTATCAATACAATCAACAATGTATCGATAC
Found at i:852236 original size:19 final size:19
Alignment explanation
Indices: 852201--852237 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
852191 TAGCCTTTGA
*
852201 TCATGCATTCTACTATGTT
1 TCATGCATTCTAATATGTT
*
852220 TCATGCATTTTAATATGT
1 TCATGCATTCTAATATGT
852238 CCAACATCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.24, C:0.16, G:0.11, T:0.49
Consensus pattern (19 bp):
TCATGCATTCTAATATGTT
Found at i:859245 original size:15 final size:15
Alignment explanation
Indices: 859225--859272 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
859215 ATTTCACCAA
859225 ATCCACCACAAAATC
1 ATCCACCACAAAATC
**
859240 ATCCACCACCTAA-C
1 ATCCACCACAAAATC
*
859254 TACCCACCACAAAATC
1 -ATCCACCACAAAATC
859270 ATC
1 ATC
859273 GATACACCAC
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 1 0.04
15 23 0.92
16 1 0.04
ACGTcount: A:0.42, C:0.44, G:0.00, T:0.15
Consensus pattern (15 bp):
ATCCACCACAAAATC
Found at i:865693 original size:79 final size:79
Alignment explanation
Indices: 865503--865695 Score: 253
Period size: 79 Copynumber: 2.4 Consensus size: 79
865493 TGGAGATAAC
* * ** * *
865503 AACGGGGCTGGAGTATCCCCGATTATGGAAAATCGGTGTTTTGGAAATAAAATCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTGAAAATAAAATCGGGGTTGGAGT
*
865568 ATCACCTCGGAAAT
66 ATCACCTCGAAAAT
* **
865582 AACAGGGTTGGAGTATCCCTAATTAT-AGAAAATTAGTATTTTGAAAATAAAATCGGGGTTGGAG
1 AACGGGGTTGGAGTATCCCCGATTATGA-AAAATTAGTATTTTGAAAATAAAATCGGGGTTGGAG
*
865646 TATCCCCTCGAAAAT
65 TATCACCTCGAAAAT
* *
865661 AACGGGGTTAGAGTATCCCCGATTGTGAAAAATTA
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTA
865696 ATGATTTAGA
Statistics
Matches: 96, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 95 0.99
80 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (79 bp):
AACGGGGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTGAAAATAAAATCGGGGTTGGAGT
ATCACCTCGAAAAT
Found at i:865868 original size:51 final size:51
Alignment explanation
Indices: 865794--865909 Score: 151
Period size: 51 Copynumber: 2.3 Consensus size: 51
865784 AAATAATGGG
* * * *
865794 GTTGGAGTGTCCCCGATTATGAAAAATTGGTGTTTCGGAAATAAAATCAGA
1 GTTGGAGTATCCCCGAATATGAAAAATTGGTGTTTCAGAAATAAAACCAGA
* * * * *
865845 TTTGGAGTATCCTCGAATGTGAAAAATTGGTGTTTTAGAAATAAAACCAGG
1 GTTGGAGTATCCCCGAATATGAAAAATTGGTGTTTCAGAAATAAAACCAGA
865896 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
865910 TTGTAAATAA
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (51 bp):
GTTGGAGTATCCCCGAATATGAAAAATTGGTGTTTCAGAAATAAAACCAGA
Found at i:865928 original size:80 final size:80
Alignment explanation
Indices: 865843--866068 Score: 253
Period size: 80 Copynumber: 2.8 Consensus size: 80
865833 AATAAAATCA
* *
865843 GATTTGGAGTATCCTCGAATGTGAAAAATTGGTGTTTTAGAAATAAAACCAGGGTTGGAGTATCC
1 GATTTGGAGTATCCTCGAATGTGAAAAATTGATGTTTTGGAAATAAAACCAGGGTTGGAGTATCC
* *
865908 CCT-TGTAAATAATGG
66 CCTCAG-AAATAACGG
* * * * * **
865923 GATTT-GAGTATCC-CCAATTGTGAAAAAACTGTTATTTTGGGAATAAAATTAGGGTTGGAGTAT
1 GATTTGGAGTATCCTCGAA-TGTG-AAAAATTGATGTTTTGGAAATAAAACCAGGGTTGGAGTAT
865986 CCCCTCAGAAATAACGG
64 CCCCTCAGAAATAACGG
* * * * *
866003 GA-TTGGAGTATCCTTGATTATAAAAAATTGATGTTTTGGAAATAAAACCGGGGTTGGAGTATCC
1 GATTTGGAGTATCCTCGAATGTGAAAAATTGATGTTTTGGAAATAAAACCAGGGTTGGAGTATCC
866067 CC
66 CC
866069 GAGATGAAGA
Statistics
Matches: 119, Mismatches: 22, Indels: 11
0.78 0.14 0.07
Matches are distributed among these distances:
78 3 0.03
79 51 0.43
80 63 0.53
81 2 0.02
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (80 bp):
GATTTGGAGTATCCTCGAATGTGAAAAATTGATGTTTTGGAAATAAAACCAGGGTTGGAGTATCC
CCTCAGAAATAACGG
Found at i:868307 original size:20 final size:20
Alignment explanation
Indices: 868282--868355 Score: 130
Period size: 20 Copynumber: 3.7 Consensus size: 20
868272 GTAAACCTAG
*
868282 AATGTATCGATACAATGAAC
1 AATGTATCAATACAATGAAC
868302 AATGTATCAATACAATGAAC
1 AATGTATCAATACAATGAAC
868322 AATGTATCAATACAATGAAC
1 AATGTATCAATACAATGAAC
*
868342 AATGTATCGATACA
1 AATGTATCAATACA
868356 TTAAGGGCAT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.47, C:0.15, G:0.12, T:0.26
Consensus pattern (20 bp):
AATGTATCAATACAATGAAC
Found at i:872926 original size:52 final size:52
Alignment explanation
Indices: 872845--872983 Score: 190
Period size: 52 Copynumber: 2.7 Consensus size: 52
872835 CTAGAAAAAG
* *
872845 AATGTATCGAAACATTTTTCATTGCATTGATACATTCT-AGGTTTTTAATCCA
1 AATGTATCGAAACATTTTTCATTGTATTGATACATTCTGA-GTTTTTAACCCA
* * *
872897 AATGTATCGACACATTTTTCATTATATTGATACATTCTGAGTTTTTGACCCA
1 AATGTATCGAAACATTTTTCATTGTATTGATACATTCTGAGTTTTTAACCCA
* * *
872949 AATGTATCGATACATTCTTCAATGTATTGATACAT
1 AATGTATCGAAACATTTTTCATTGTATTGATACAT
872984 GTAGACAATT
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
52 76 0.99
53 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.42
Consensus pattern (52 bp):
AATGTATCGAAACATTTTTCATTGTATTGATACATTCTGAGTTTTTAACCCA
Found at i:877663 original size:19 final size:19
Alignment explanation
Indices: 877619--877674 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
877609 CTACCAATTT
**
877619 CATGTATCGATACAATTGTG
1 CATGTATCGATACAA-TGAA
877639 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
* *
877658 CATGTATTGATATAATG
1 CATGTATCGATACAATG
877675 TATCGATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:880209 original size:13 final size:13
Alignment explanation
Indices: 880190--880255 Score: 87
Period size: 13 Copynumber: 5.1 Consensus size: 13
880180 ATAGTAACCT
880190 ATGTATCGATACA
1 ATGTATCGATACA
*
880203 TTGTATCGATACA
1 ATGTATCGATACA
* *
880216 ATGTACCGACACA
1 ATGTATCGATACA
*
880229 TTGTATCGATACA
1 ATGTATCGATACA
*
880242 ATGTACCGATACA
1 ATGTATCGATACA
880255 A
1 A
880256 AGAACACTGT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 44 1.00
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:880229 original size:26 final size:26
Alignment explanation
Indices: 880190--880250 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
880180 ATAGTAACCT
* *
880190 ATGTATCGATACATTGTATCGATACA
1 ATGTACCGACACATTGTATCGATACA
880216 ATGTACCGACACATTGTATCGATACA
1 ATGTACCGACACATTGTATCGATACA
880242 ATGTACCGA
1 ATGTACCGA
880251 TACAAAGAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (26 bp):
ATGTACCGACACATTGTATCGATACA
Found at i:884808 original size:15 final size:15
Alignment explanation
Indices: 884788--884819 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
884778 GTCAACTTCT
884788 TCATTATCATCATCA
1 TCATTATCATCATCA
*
884803 TCATTATCTTCATCA
1 TCATTATCATCATCA
884818 TC
1 TC
884820 TTTGATGGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (15 bp):
TCATTATCATCATCA
Found at i:886521 original size:13 final size:13
Alignment explanation
Indices: 886503--886529 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
886493 TATAATGAAC
886503 ATGTATCGATACA
1 ATGTATCGATACA
886516 ATGTATCGATACA
1 ATGTATCGATACA
886529 A
1 A
886530 AGCATTATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:891257 original size:13 final size:13
Alignment explanation
Indices: 891239--891263 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
891229 CAATTCGCTT
891239 TGTATCGATACAG
1 TGTATCGATACAG
891252 TGTATCGATACA
1 TGTATCGATACA
891264 AAGCAACATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:892223 original size:16 final size:16
Alignment explanation
Indices: 892202--892237 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
892192 TTCATTAAGA
**
892202 AAAGTTAAGTACAAGC
1 AAAGTTAAAAACAAGC
892218 AAAGTTAAAAACAAGC
1 AAAGTTAAAAACAAGC
892234 AAAG
1 AAAG
892238 AAACAAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.58, C:0.11, G:0.17, T:0.14
Consensus pattern (16 bp):
AAAGTTAAAAACAAGC
Found at i:894735 original size:36 final size:35
Alignment explanation
Indices: 894674--894741 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 35
894664 CTAAGTGATT
*
894674 GAGAGGTTCTATCTTAACCTTTGAAAAAGATAGGGG
1 GAGAGGTTCTATCTTAACCTGTG-AAAAGATAGGGG
*
894710 GAGAGGTTCTATCTT-AGCTCGTGAAAAGATAG
1 GAGAGGTTCTATCTTAACCT-GTGAAAAGATAG
894742 AGAGGTTTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
35 12 0.41
36 17 0.59
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.28
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAACCTGTGAAAAGATAGGGG
Found at i:895439 original size:20 final size:20
Alignment explanation
Indices: 895416--895490 Score: 114
Period size: 20 Copynumber: 3.8 Consensus size: 20
895406 AAGTACTCAG
*
895416 ATGTATCGATACATTTTTCC
1 ATGTATCGATACATTTTTCA
* *
895436 ATGTATCGATACATGTATCA
1 ATGTATCGATACATTTTTCA
*
895456 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
895476 ATGTATCGATACATT
1 ATGTATCGATACATT
895491 CTGTCTTTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:897760 original size:96 final size:96
Alignment explanation
Indices: 897595--897841 Score: 379
Period size: 96 Copynumber: 2.6 Consensus size: 96
897585 AAATTTTTAT
* *
897595 TCATTAGGGATACTCCAACCCTATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACTTGTCA
1 TCATTGGGGACACTCCAACCC-ATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACTTGTCA
* *
897660 AGATTCAAATCTTATTCTTGCTTAAGTTGTCA
65 AGATTCAAATCTTATTCTCGCTTAAATTGTCA
* * * * *
897692 TCATTGGGGACACTCCAATCCATTCTTCCAAGGGGATACACCAACCCCGCTTTTAAACTTGTGAA
1 TCATTGGGGACACTCCAACCCATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACTTGTCAA
897757 GATTCAAATCTTATTCTCGCTTAAATTGTCA
66 GATTCAAATCTTATTCTCGCTTAAATTGTCA
*
897788 TCATCGGGGACACTCCAACCCCATTCCTCCGAGGGGATACTCCAACCCCG-TTTT
1 TCATTGGGGACACTCCAA-CCCATTCCTCCGAGGGGATACTCCAACCCCGCTTTT
897842 CTTAATCAAA
Statistics
Matches: 135, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
96 90 0.67
97 45 0.33
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (96 bp):
TCATTGGGGACACTCCAACCCATTCCTCCGAGGGGATACTCCAACCCCGCTTTTAAACTTGTCAA
GATTCAAATCTTATTCTCGCTTAAATTGTCA
Found at i:907178 original size:15 final size:16
Alignment explanation
Indices: 907158--907187 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
907148 TCTATCAAAC
907158 CCGCCAGTG-TTGGTA
1 CCGCCAGTGCTTGGTA
907173 CCGCCAGTGCTTGGT
1 CCGCCAGTGCTTGGT
907188 CGTCCCTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.10, C:0.30, G:0.33, T:0.27
Consensus pattern (16 bp):
CCGCCAGTGCTTGGTA
Found at i:909459 original size:18 final size:17
Alignment explanation
Indices: 909419--909483 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 17
909409 TTCTTCATAC
909419 CCAAAACAAAAAACAAAAA
1 CCAAAA-AAAAAA-AAAAA
909438 --AAAAAAAAAGAAAAAA
1 CCAAAAAAAAA-AAAAAA
909454 CCAAAAAAAACAAAAAAA
1 CCAAAAAAAA-AAAAAAA
*
909472 CTAAGAAAAAAA
1 CCAA-AAAAAAA
909484 TAACAAAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
16 10 0.25
17 5 0.12
18 18 0.45
19 7 0.17
ACGTcount: A:0.83, C:0.12, G:0.03, T:0.02
Consensus pattern (17 bp):
CCAAAAAAAAAAAAAAA
Found at i:909468 original size:29 final size:29
Alignment explanation
Indices: 909421--909482 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
909411 CTTCATACCC
909421 AAAACAAAAAACAAAAAAAAAAAAAAGAA
1 AAAACAAAAAACAAAAAAAAAAAAAAGAA
* **
909450 AAAACCAAAAAA-AACAAAAAAACTAAGAA
1 AAAA-CAAAAAACAAAAAAAAAAAAAAGAA
909479 AAAA
1 AAAA
909483 ATAACAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 22 0.76
30 7 0.24
ACGTcount: A:0.85, C:0.10, G:0.03, T:0.02
Consensus pattern (29 bp):
AAAACAAAAAACAAAAAAAAAAAAAAGAA
Found at i:909495 original size:11 final size:11
Alignment explanation
Indices: 909420--909496 Score: 68
Period size: 11 Copynumber: 6.9 Consensus size: 11
909410 TCTTCATACC
*
909420 CAAAACAAAAAA
1 CAAAA-AAATAA
909432 CAAAAAAA-AA
1 CAAAAAAATAA
* *
909442 AAAAAGAAAAAA
1 CAAAA-AAATAA
*
909454 CCAAAAAA-AA
1 CAAAAAAATAA
909464 CAAAAAAACTAA
1 CAAAAAAA-TAA
*
909476 GAAAAAAATAA
1 CAAAAAAATAA
909487 CAAAAAAATA
1 CAAAAAAATA
909497 GAAGGATGTC
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
10 15 0.27
11 21 0.38
12 19 0.35
ACGTcount: A:0.83, C:0.10, G:0.03, T:0.04
Consensus pattern (11 bp):
CAAAAAAATAA
Found at i:910995 original size:57 final size:57
Alignment explanation
Indices: 910705--912334 Score: 1839
Period size: 57 Copynumber: 28.5 Consensus size: 57
910695 CGTTTATCTC
* *
910705 TTCAAAGCCCATAAGTTAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* ** ** *
910761 TTCAAAGCCTACAAGTCGGTGGCACTCTTTTCAAAGCCCACACTAGTTGGTGGCAACTCTT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACA--AGTCAGTGGC-AC-CCT
** * * *
910822 TTCAAAGCCCTTAAGTTAGTGGCA-TCCTTTCAAAGCCCACGAGTCAGTGGCAACTCTT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGC-AC-CCT
* * *
910880 TTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAGCCCACAAGCCAGTGGCACCCT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * **
910936 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCTCACAAGTCAGTGGCATTCT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
910993 TTCAAAGCCCACAAGTTACTGGCAC-CCTTTCAAAGCCCATAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCT
* *
911050 TTCAAAGCCCACAAGTTAATGGCA-TCCTTTT-AAAGCCCACAAGTCAGTCGCACCCT
1 TTCAAAGCCCACAAGTTAGTGGCACT-CTTTTCAAAGCCCACAAGTCAGTGGCACCCT
*
911106 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAATGGCACCCT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
911163 TTCCAAGCCCATAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * * **
911220 TTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAACCCATAAGTTAGTGGCACTATT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCT
* * * * * *
911277 TTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCTAAGCCCATAACTTAGTGGCACTCTT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCT
* *
911334 TTCAAAGCCCACAAGTTAGTGGCAC-CTTTTCAAAACCCACAAGTCAGTGGCAACCT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
911390 TTCAAAGCCCACAAGTTACTGGCAC-CCTTTCAAAGCCCATAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCT
* * * *
911447 TTCAAAGCCCACAAGTTAATGGCA-TCCTTTT-AAAGCCAATAAGTCAGTCGCACCCT
1 TTCAAAGCCCACAAGTTAGTGGCACT-CTTTTCAAAGCCCACAAGTCAGTGGCACCCT
911503 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
911560 TTCCAAGCCCATAAGTTAGTGGCACTCTTTTCAAAGCTCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * *
911617 TTCAAAGCCCACAAGTTACTGGCAC-CCTTTCAAAGCCCATAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCT
* *
911674 TTCAAAGTCCACAAGTTA-TGGCA-TCCTTTT-AAAGCCCACAAGTCAGTCGCACCCT
1 TTCAAAGCCCACAAGTTAGTGGCACT-CTTTTCAAAGCCCACAAGTCAGTGGCACCCT
*
911729 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTTGCACCCT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * * *
911786 TTCCAAGCCCATAAGTTAGTGGCACTCTTTTCAAAGCCTACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * * **
911843 TTCAAAGCCCACAAGTCAGTTGCAC-CCTTTCAAAGCCCACAAGTTAGTGGCACTTTT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCT
* * * * *
911900 TTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCCAAGCCCATAAGTTAGTGGCACTCTT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCT
* * * * * * * *
911957 TTCAAAGCCCACAAGTCAGTCGTAC-CATTTCCAAGCCCATAAGTTAGTGGCACTCTT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCT
* * ** *
912014 TTCAAAGCCTACAAGTTAGTGGCA-TCCTTTCAAAGCCCACAAGTCAGTTACAGCCT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
912070 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCTCACAAGTTAGTGGCACCTT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * * *
912127 TTCCAAGCCCATAAGTTAGTGGCACTCTTTTTAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
* * * * * * **
912184 TTCAAAGCCCACATGTTAGTAGCAC-CCTTTCAAAACCCATAAATCAGTGGCACTATT
1 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCAC-CCT
* * * **
912241 TTCAAAGCCCACAAGCTT-GTGGTAACTCTTTTCAAAGTCCACATAAGTCGGTGGCAACTTTT
1 TTCAAAGCCCACAAG-TTAGTGG-CACTCTTTTCAAAG-CC-CACAAGTCAGTGGC-AC-CCT
912303 TTCAAAGCCTACACAAGTTAGTGGCAC-CTTTT
1 TTCAAAGCC--CACAAGTTAGTGGCACTCTTTT
912335 TCTAAAAAAA
Statistics
Matches: 1363, Mismatches: 175, Indels: 66
0.85 0.11 0.04
Matches are distributed among these distances:
55 19 0.01
56 335 0.25
57 835 0.61
58 73 0.05
59 16 0.01
60 19 0.01
61 33 0.02
62 19 0.01
63 4 0.00
64 10 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (57 bp):
TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCT
Found at i:911003 original size:85 final size:85
Alignment explanation
Indices: 910705--912255 Score: 1823
Period size: 85 Copynumber: 18.2 Consensus size: 85
910695 CGTTTATCTC
* *
910705 TTCAAAGCCCATAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC
* *
910770 TACAAGTCGGTGGCACTCTT
66 CACAAGTCAGTGGCACTCTT
* * ** *
910790 TTCAAAGCCCACACTAGTTGGTGGCAACTCTTTTCAAAGCCCTTAAGTTAGTGGCATCCTTTCAA
1 TTCAAAGCCCACA--AGTTAGTGGC-AC-CCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAA
*
910855 AGCCCACGAGTCAGTGGCAACTCTT
62 AGCCCACAAGTCAGTGGC-ACTCTT
* * **
910880 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGCCAGTGGCACCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC
910945 CACAAGTCAGTGGCACTCTT
66 CACAAGTCAGTGGCACTCTT
* * ** *
910965 TTCAAAGCTCACAAGTCAGTGGCATTCTTTCAAAGCCCACAAGTTACTGGCACCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC
*
911030 CATAAGTCAGTGGCACTCTT
66 CACAAGTCAGTGGCACTCTT
* * * * *
911050 TTCAAAGCCCACAAGTTAATGGCATCCTTTTAAAGCCCACAAGTCAGTCGCACCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC
*
911115 CACAAGTTAGTGGCACTCTT
66 CACAAGTCAGTGGCACTCTT
* * * * *
911135 TTCAAAGCCCACAAGTCAATGGCACCCTTTCCAAGCCCATAAGTTAGTGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGC
* *
911200 CCACAAGTTAGTGGCA-TCCT
65 CCACAAGTCAGTGGCACTCTT
* * **
911220 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAACCCATAAGTTAGTGGCACTATTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGC
* *
911285 CCACAAGTTAGTGGCAC-CCT
65 CCACAAGTCAGTGGCACTCTT
* * * * * *
911305 TTCTAAGCCCATAACTTAGTGGCACTCTTTTCAAAGCCCACAAGTTAGTGGCACCTTTTCAAAAC
1 TTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGC
911370 CCACAAGTCAGTGGCAAC-C-T
65 CCACAAGTCAGTGGC-ACTCTT
* * * *
911390 TTCAAAGCCCACAAGTTACTGGCACCCTTTCAAAGCCCATAAGTCAGTGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGC
* *
911455 CCACAAGTTAATGGCA-TCCTT
65 CCACAAGTCAGTGGCACT-CTT
* * * * *
911476 TT-AAAGCCAATAAGTCAGTCGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGC
*
911540 CCACAAGTCAGTGGCAC-CCT
65 CCACAAGTCAGTGGCACTCTT
* * * * * *
911560 TTCCAAGCCCATAAGTTAGTGGCACTCTTTTCAAAGCTCACAAGTCAGTGGCATCCTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGC
* * *
911625 CCACAAGTTACTGGCAC-CCT
65 CCACAAGTCAGTGGCACTCTT
* * * * * *
911645 TTCAAAGCCCATAAGTCAGTGGCACTCTTTTCAAAGTCCACAAGTTA-TGGCATCCTTTTAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGC
* *
911709 CCACAAGTCAGTCGCAC-CCT
65 CCACAAGTCAGTGGCACTCTT
* * * *
911729 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTTGCACCCTTTCCAAGC
1 TTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGC
* *
911794 CCATAAGTTAGTGGCACTCTT
65 CCACAAGTCAGTGGCACTCTT
* * * *
911815 TTCAAAGCCTACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTTGCACCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC
* *
911880 CACAAGTTAGTGGCACTTTT
66 CACAAGTCAGTGGCACTCTT
* * *
911900 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCCAAGCCCATAAGTTAGTGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGC
* * *
911965 CCACAAGTCAGTCGTAC-CAT
65 CCACAAGTCAGTGGCACTCTT
* * * * *
911985 TTCCAAGCCCATAAGTTAGTGGCACTCTTTTCAAAGCCTACAAGTTAGTGGCATCCTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGC
**
912050 CCACAAGTCAGTTACAGC-C-T
65 CCACAAGTCAGTGGCA-CTCTT
* * * *
912070 TTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCTCACAAGTTAGTGGCACCTTTTCCAAGC
1 TTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGC
* *
912135 CCATAAGTTAGTGGCACTCTT
65 CCACAAGTCAGTGGCACTCTT
* * * * *
912156 TTTAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACATGTTAGTAGCACCCTTTCAAAACC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC
* * *
912221 CATAAATCAGTGGCACTATT
66 CACAAGTCAGTGGCACTCTT
912241 TTCAAAGCCCACAAG
1 TTCAAAGCCCACAAG
912256 CTTGTGGTAA
Statistics
Matches: 1279, Mismatches: 164, Indels: 46
0.86 0.11 0.03
Matches are distributed among these distances:
84 107 0.08
85 861 0.67
86 226 0.18
87 10 0.01
88 10 0.01
89 46 0.04
90 19 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.25
Consensus pattern (85 bp):
TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC
CACAAGTCAGTGGCACTCTT
Found at i:911095 original size:142 final size:142
Alignment explanation
Indices: 910705--912334 Score: 1897
Period size: 142 Copynumber: 11.4 Consensus size: 142
910695 CGTTTATCTC
* * *
910705 TTCAAAGCCCATAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGC
* ** * * **
910769 CTACAAGTCGGTGGCACTCTTTTCAAAGCCCACACTAGTTGGTGGCAACTCTTTTCAAAGCCCTT
66 CCACAAGTTAGTGGCAC-CCTTTCAAAGCCCACA--AGTTAGTGGC-ACTCTTTTCAAAGCCCAC
910834 AAGTTAGTGGCATCCT
127 AAGTTAGTGGCATCCT
* * * * *
910850 TTCAAAGCCCACGAGTCAGTGGCAACTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAA
1 TTCAAAGCCCACAAGTTAGTGGC-AC-CCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAA
** * *
910914 GCCCACAAGCCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCTCACAA
64 GCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAA
* *
910979 GTCAGTGGCATTCT
129 GTTAGTGGCATCCT
* * *
910993 TTCAAAGCCCACAAGTTACTGGCACCCTTTCAAAGCCCATAAGTCAGTGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGC
* * * * * *
911058 CCACAAGTTAATGGCATCCTTTTAAAGCCCACAAGTCAGTCGCAC-CCTTTCAAAGCCCACAAGT
66 CCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGT
*
911122 TAGTGGCACTCTT
131 TAGTGGCA-TCCT
* * * *
911135 TTCAAAGCCCACAAGTCAATGGCACCCTTTCCAAGCCCATAAGTTAGTGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGC
* * * *
911200 CCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAACCCATAAGT
66 CCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGT
**
911264 TAGTGGCACTATT
131 TAGTGGCA-TCCT
* * *
911277 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCTAAGCCCATAACTTAGTGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGC
* * *
911342 CCACAAGTTAGTGGCACCTTTTCAAAACCCACAAGTCAGTGGCAAC-C-TTTCAAAGCCCACAAG
66 CCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGC-ACTCTTTTCAAAGCCCACAAG
* *
911405 TTACTGGCACCCT
130 TTAGTGGCATCCT
* * * *
911418 TTCAAAGCCCATAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTTAATGGCA-TCCTTTT-AAA
1 TTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGCCCACAAGTTAGTGGCACT-CTTTTCAAA
* * * *
911481 GCCAATAAGTCAGTCGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAA
64 GCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAA
* *
911546 GTCAGTGGCACCCT
129 GTTAGTGGCATCCT
* * * * * *
911560 TTCCAAGCCCATAAGTTAGTGGCACTCTTTTCAAAGCTCACAAGTCAGTGGCA-TCCTTTCAAAG
1 TTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAG
* * * *
911624 CCCACAAGTTACTGGCACCCTTTCAAAGCCCATAAGTCAGTGGCACTCTTTTCAAAGTCCACAAG
65 CCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAG
911689 TTA-TGGCATCCT
130 TTAGTGGCATCCT
* * *
911701 TTTAAAGCCCACAAGTCAGTCGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGC
* * * * *
911766 CCACAAGTCAGTTGCACCCTTTCCAAGCCCATAAGTTAGTGGCACTCTTTTCAAAGCCTACAAGT
66 CCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGT
911831 TAGTGGCATCCT
131 TAGTGGCATCCT
* * *
911843 TTCAAAGCCCACAAGTCAGTTGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTTTTTTCAAAGC
1 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGC
* *
911908 CCACAAGTTAGTGGCACCCTTTCCAAGCCCATAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGT
66 CCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGT
* * *
911973 CAGTCGTA-CCAT
131 TAGTGGCATCC-T
* * * * *
911985 TTCCAAGCCCATAAGTTAGTGGCACTCTTTTCAAAGCCTACAAGTTAGTGGCA-TCCTTTCAAAG
1 TTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAG
* ** * *
912049 CCCACAAGTCAGTTACAGCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCTCACAAG
65 CCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAG
912114 TTAGTGGCA-CCTT
130 TTAGTGGCATCC-T
* * * * *
912127 TTCCAAGCCCATAAGTTAGTGGCACTCTTTTTAAAGCCCACAAGTTAGTGGCA-TCCTTTCAAAG
1 TTCAAAGCCCACAAGTTAGTGGCAC-CCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAG
* * * * * * *
912191 CCCACATGTTAGTAGCACCCTTTCAAAACCCATAAATCAGTGGCACTATTTTCAAAGCCCACAAG
65 CCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAG
* *
912256 CTT-GTGGTAACTCTT
130 -TTAGTGG-CA-TCCT
* ** **
912271 TTCAAAGTCCACATAAGTCGGTGGCAACTTTTTTCAAAGCCTACACAAGTTAGTGGCAC-CTTTT
1 TTCAAAG-CC-CACAAGTTAGTGGC-AC-CCTTTCAAAGCC--CACAAGTTAGTGGCACTCTTTT
912335 TCTAAAAAAA
Statistics
Matches: 1306, Mismatches: 154, Indels: 46
0.87 0.10 0.03
Matches are distributed among these distances:
140 26 0.02
141 221 0.17
142 829 0.63
143 80 0.06
144 15 0.01
145 23 0.02
146 29 0.02
147 64 0.05
149 19 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (142 bp):
TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGC
CCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACTCTTTTCAAAGCCCACAAGT
TAGTGGCATCCT
Found at i:912459 original size:45 final size:48
Alignment explanation
Indices: 912395--912513 Score: 138
Period size: 49 Copynumber: 2.5 Consensus size: 48
912385 CTGTTTGACA
* *
912395 TCGCTAGCATTGAATCAGCATATT-G-CCACCTTT-ATTAGCCCAATG
1 TCGCTAGCCTTGAATCAGCACATTGGTCCACCTTTCATTAGCCCAATG
* * * *
912440 TCGCTGGCCTTGAATCAGCACATTGGTCCACTTTTCCCTTAGCCTAATG
1 TCGCTAGCCTTGAATCAGCACATTGGTCCACCTTT-CATTAGCCCAATG
*
912489 TCGCTAGCCTTGAATGA-CACATTGG
1 TCGCTAGCCTTGAATCAGCACATTGG
912514 GATTCCTCTC
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
45 21 0.34
46 1 0.02
47 7 0.11
48 8 0.13
49 25 0.40
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (48 bp):
TCGCTAGCCTTGAATCAGCACATTGGTCCACCTTTCATTAGCCCAATG
Found at i:913189 original size:10 final size:10
Alignment explanation
Indices: 913174--913200 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
913164 ATCTATTTCC
913174 TATGGAAAAG
1 TATGGAAAAG
913184 TATGGAAAAG
1 TATGGAAAAG
913194 TATGGAA
1 TATGGAA
913201 CTTTTAGAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.22
Consensus pattern (10 bp):
TATGGAAAAG
Found at i:913277 original size:20 final size:20
Alignment explanation
Indices: 913254--913330 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
913244 AAGTACCCAG
*
913254 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTGA
* *
913274 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTGA
913294 ATGTATCGATACATTCTTTGA
1 ATGTATCGATACATT-TTTGA
913315 A-GTATCGATACATTTT
1 ATGTATCGATACATTTT
913331 GTCTTTTTAC
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
19 2 0.04
20 44 0.86
21 5 0.10
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTTTTGA
Found at i:915769 original size:13 final size:13
Alignment explanation
Indices: 915751--915781 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
915741 ACATTTCATC
915751 ATGTATCGATACA
1 ATGTATCGATACA
915764 ATGTATCGATACA
1 ATGTATCGATACA
*
915777 TTGTA
1 ATGTA
915782 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Done.