Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold194
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3945165
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 1023 characters in sequence are not A, C, G, or T
File 8 of 24
Found at i:1314455 original size:33 final size:33
Alignment explanation
Indices: 1314412--1314476 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
1314402 TACAACTATT
* *
1314412 TGTATTGATACATGGCAG-ATTGTATCGATACAA
1 TGTATCGATACAT-GAAGAATTGTATCGATACAA
1314445 TGTATCGATACATGAAGAATTGTATCGATACA
1 TGTATCGATACATGAAGAATTGTATCGATACA
1314477 TTGTCCCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 3 0.10
33 26 0.90
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.32
Consensus pattern (33 bp):
TGTATCGATACATGAAGAATTGTATCGATACAA
Found at i:1315629 original size:165 final size:164
Alignment explanation
Indices: 1315416--1315908 Score: 514
Period size: 165 Copynumber: 3.0 Consensus size: 164
1315406 GAATTTCATT
* * * * * *
1315416 AAACTGATTTAATAAGAATTTAATAACAATATTTGATGAATTTTAAAAAGTTTAAATCGA-AAAA
1 AAACTAATTTAATATGAATTAAATAATAATATTTGATGAATATTAAAAA-TTTAAA-CAAGAAAA
* * *
1315480 ATCCCCCCGAAAACATTTACGGAGTAGAAAACTTTATATTTAGAAAATAGGAAAATTTTAAGGAA
64 ATCCTCCCAAAAAAATTTACGGAGTAGAAAACTTTATATTTAGAAAATAGGAAAATTTTAAGGAA
* * *
1315545 AAAATGAAAAATTAATTAAATAAAAGGAATTTTTCA
129 AAAATGAAAAACTCATGAAATAAAAGGAATTTTTCA
* * * * *
1315581 TAACTAATTTATTATGAATTAAATGATGATATTCGATGAATATTAAAAATTATAAACTAAGAAAA
1 AAACTAATTTAATATGAATTAAATAATAATATTTGATGAATATTAAAAATT-TAAAC-AAGAAAA
* * *
1315646 ATCCTCCCAAAAATATTTACGGAGTAGAAAACTCTGTAT-TTTA-TAAATAGGAAAATTTGAA-G
64 ATCCTCCCAAAAAAATTTACGGAGTAGAAAACT-T-TATATTTAGAAAATAGGAAAATTTTAAGG
* * *
1315708 AAAAAATGAAAAAGTCATGAAA-ATAAATGAATTTTTTA
127 AAAAAATGAAAAACTCATGAAATA-AAAGGAATTTTTCA
* * *
1315746 AAACTAATTTAATATGAGTTAAATAATAATAATTTGATGAATATTAAAAAATTTTAACTATG-AA
1 AAACTAATTTAATATGAATTAAATAATAAT-ATTTGATGAATATT-AAAAATTTAAAC-AAGAAA
* * * * * * * *
1315810 AATCTTCCCAAAAAAAATTACGTAGAAGAAAATTTTGTATTTCGAAAATA-GAAAGAATTTAAGG
63 AATCCTCCCAAAAAAATTTACGGAGTAGAAAACTTTATATTTAGAAAATAGGAAA-ATTTTAAGG
* *
1315874 AAAAAACGAAAAACTCATGAAATAAAAGGGATTTT
127 AAAAAATGAAAAACTCATGAAATAAAAGGAATTTT
1315909 GAAAAAAAAT
Statistics
Matches: 271, Mismatches: 44, Indels: 25
0.80 0.13 0.07
Matches are distributed among these distances:
163 2 0.01
164 12 0.04
165 141 0.52
166 100 0.37
167 13 0.05
168 3 0.01
ACGTcount: A:0.50, C:0.07, G:0.12, T:0.31
Consensus pattern (164 bp):
AAACTAATTTAATATGAATTAAATAATAATATTTGATGAATATTAAAAATTTAAACAAGAAAAAT
CCTCCCAAAAAAATTTACGGAGTAGAAAACTTTATATTTAGAAAATAGGAAAATTTTAAGGAAAA
AATGAAAAACTCATGAAATAAAAGGAATTTTTCA
Found at i:1316991 original size:43 final size:43
Alignment explanation
Indices: 1316908--1317091 Score: 149
Period size: 43 Copynumber: 4.3 Consensus size: 43
1316898 AAATCGACAG
* * * * *
1316908 GTCAACAAAGGAT-AAAAGAGTTAACCGGGATTGAACCGATAA
1 GTCAACAAAGGATAAAAAGATTTATCCGAGACTAAACCGATAA
* * *
1316950 GTCAATAAAGGATAAAAAGATTTATCCGAGACTAAATCGATAG
1 GTCAACAAAGGATAAAAAGATTTATCCGAGACTAAACCGATAA
* * * * * * *
1316993 GTAAACAAAGAATAAAGAAG-TTGAT-GGGGATTGAACCGATAA
1 GTCAACAAAGGATAAA-AAGATTTATCCGAGACTAAACCGATAA
* * * * *
1317035 GTCAACAAAGGATAAAAAGAATTACCCGAGACTAAGCCAATAG
1 GTCAACAAAGGATAAAAAGATTTATCCGAGACTAAACCGATAA
*
1317078 GTAAACAAAGGATA
1 GTCAACAAAGGATA
1317092 GACCGGGATT
Statistics
Matches: 107, Mismatches: 31, Indels: 7
0.74 0.21 0.05
Matches are distributed among these distances:
41 3 0.03
42 39 0.36
43 62 0.58
44 3 0.03
ACGTcount: A:0.48, C:0.12, G:0.22, T:0.18
Consensus pattern (43 bp):
GTCAACAAAGGATAAAAAGATTTATCCGAGACTAAACCGATAA
Found at i:1317023 original size:85 final size:85
Alignment explanation
Indices: 1316896--1317333 Score: 378
Period size: 85 Copynumber: 5.2 Consensus size: 85
1316886 AGGGCTAAAC
* * * * *
1316896 CTAAATCGACAGGTCAACAAAGGATAAA-AGAGTTAACCGGGATTGAACCGATAAGTCAATAAAG
1 CTAAACCGACAGGTAAACAAAGAATAAAGA-AGTTGACCGGGATTGAACCGATAAGTCAACAAAG
*
1316960 GATAAAAAGATTTATCCGAGA
65 GATAAAAAGATTTACCCGAGA
* * **
1316981 CTAAATCGATAGGTAAACAAAGAATAAAGAAGTTGATGGGGATTGAACCGATAAGTCAACAAAGG
1 CTAAACCGACAGGTAAACAAAGAATAAAGAAGTTGACCGGGATTGAACCGATAAGTCAACAAAGG
*
1317046 ATAAAAAGAATTACCCGAGA
66 ATAAAAAGATTTACCCGAGA
* * * * *
1317066 CTAAGCCAATAGGTAAACAAAG------G-A-TAGACCGGGATTGAATCGATAAGTCAACAAAGG
1 CTAAACCGACAGGTAAACAAAGAATAAAGAAGTTGACCGGGATTGAACCGATAAGTCAACAAAGG
* * *
1317123 ATGAAAGGATTTACCGGAGA
66 ATAAAAAGATTTACCCGAGA
* * * * * * * * ** * *
1317143 CTAAGCCAACAAGTAAATAAAGGATAAAAAAGGTTGACCAGGATTGAGCTAACAAGTCAATAAAG
1 CTAAACCGACAGGTAAACAAAGAATAAAGAA-GTTGACCGGGATTGAACCGATAAGTCAACAAAG
*
1317208 AAT-AAAAGTATTTACCCGAGA
65 GATAAAAAG-ATTTACCCGAGA
* * * * * * *
1317229 CTAAGCAGACAAGTAAA-AAAGAATAAAGAAGTTAACCGAGATTGAACCGACAAGTCAACAAAGA
1 CTAAACCGACAGGTAAACAAAGAATAAAGAAGTTGACCGGGATTGAACCGATAAGTCAACAAAGG
*
1317293 ATAAAAAGATTTACTC-ATGA
66 ATAAAAAGATTTACCCGA-GA
* *
1317313 CTAAGCTGACAGGTAAACAAA
1 CTAAACCGACAGGTAAACAAA
1317334 TGACAAAAAA
Statistics
Matches: 290, Mismatches: 49, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
77 64 0.22
78 1 0.00
79 1 0.00
83 1 0.00
84 54 0.19
85 116 0.40
86 53 0.18
ACGTcount: A:0.48, C:0.14, G:0.21, T:0.18
Consensus pattern (85 bp):
CTAAACCGACAGGTAAACAAAGAATAAAGAAGTTGACCGGGATTGAACCGATAAGTCAACAAAGG
ATAAAAAGATTTACCCGAGA
Found at i:1317042 original size:42 final size:41
Alignment explanation
Indices: 1316908--1317053 Score: 148
Period size: 42 Copynumber: 3.5 Consensus size: 41
1316898 AAATCGACAG
*
1316908 GTCAACAAAGGATAAAAGAGTTAACCGGGATTGAACCGATAA
1 GTCAACAAAGGATAAAA-AGTTAATCGGGATTGAACCGATAA
* * * * * * *
1316950 GTCAATAAAGGATAAAAAGATTTATCCGAGACTAAATCGATAG
1 GTCAACAAAGGATAAAAAG-TTAAT-CGGGATTGAACCGATAA
* * * *
1316993 GTAAACAAAGAATAAAGAAGTTGATGGGGATTGAACCGATAA
1 GTCAACAAAGGATAAA-AAGTTAATCGGGATTGAACCGATAA
1317035 GTCAACAAAGGATAAAAAG
1 GTCAACAAAGGATAAAAAG
1317054 AATTACCCGA
Statistics
Matches: 81, Mismatches: 20, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
41 5 0.06
42 44 0.54
43 29 0.36
44 3 0.04
ACGTcount: A:0.48, C:0.11, G:0.23, T:0.18
Consensus pattern (41 bp):
GTCAACAAAGGATAAAAAGTTAATCGGGATTGAACCGATAA
Found at i:1317146 original size:77 final size:77
Alignment explanation
Indices: 1317019--1317168 Score: 228
Period size: 77 Copynumber: 1.9 Consensus size: 77
1317009 GAAGTTGATG
* *
1317019 GGGATTGAACCGATAAGTCAACAAAGGATAAAAAGAATTACCCGAGACTAAGCCAATAGGTAAAC
1 GGGATTGAACCGATAAGTCAACAAAGGATAAAAAGAATTACCCGAGACTAAGCCAACAAGTAAAC
1317084 AAAGGATAGACC
66 AAAGGATAGACC
* * * * * *
1317096 GGGATTGAATCGATAAGTCAACAAAGGATGAAAGGATTTACCGGAGACTAAGCCAACAAGTAAAT
1 GGGATTGAACCGATAAGTCAACAAAGGATAAAAAGAATTACCCGAGACTAAGCCAACAAGTAAAC
1317161 AAAGGATA
66 AAAGGATA
1317169 AAAAAGGTTG
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
77 65 1.00
ACGTcount: A:0.46, C:0.15, G:0.23, T:0.16
Consensus pattern (77 bp):
GGGATTGAACCGATAAGTCAACAAAGGATAAAAAGAATTACCCGAGACTAAGCCAACAAGTAAAC
AAAGGATAGACC
Found at i:1317292 original size:42 final size:42
Alignment explanation
Indices: 1317194--1317297 Score: 113
Period size: 41 Copynumber: 2.5 Consensus size: 42
1317184 GATTGAGCTA
* * * *
1317194 ACAAGTCAATAAAGAATAAAAGTATTTACCCGAGACTAAGCAG
1 ACAAGTCAAAAAAGAAT-AAAGAAGTTAACCGAGACTAAGCAG
* *
1317237 ACAAGT-AAAAAAGAATAAAGAAGTTAACCGAGATTGAA-CCG
1 ACAAGTCAAAAAAGAATAAAGAAGTTAACCGAGACT-AAGCAG
*
1317278 ACAAGTCAACAAAGAATAAA
1 ACAAGTCAAAAAAGAATAAA
1317298 AAGATTTACT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
41 23 0.44
42 23 0.44
43 6 0.12
ACGTcount: A:0.54, C:0.14, G:0.16, T:0.15
Consensus pattern (42 bp):
ACAAGTCAAAAAAGAATAAAGAAGTTAACCGAGACTAAGCAG
Found at i:1317703 original size:81 final size:81
Alignment explanation
Indices: 1317467--1318781 Score: 1030
Period size: 81 Copynumber: 16.3 Consensus size: 81
1317457 CCAGAAATAG
* * * * * *
1317467 TCAAATAGGAATGAAAAGAGTTTGACTAGATGCAATCAAATGATAATGAAAAGATGTTTGACCAA
1 TCAAACAGTAATGAAAAGAGTTTGACTAGATACAGTCAAACGATAATGAAAAGATGTTTGACCAG
** *
1317532 GGTAAGAACCATCACA
66 GGCGAGAACCATCACT
* * * *
1317548 TCAAACAGTAATGAAAAAAAAGTTTGAAC-AGATATAGTCAAATGATAATGAAAAGATATTTGAC
1 TCAAACAGTAATG--AAAAGAGTTTG-ACTAGATACAGTCAAACGATAATGAAAAGATGTTTGAC
* *
1317612 CAGGACGAGAACCATTACT
63 CAGGGCGAGAACCATCACT
* * * * * **
1317631 TGAAACAGTAATGAAAAGAGTTTGACTAGATGCAGTCAAATGATAACGAAAAGATGTTTAATTAG
1 TCAAACAGTAATGAAAAGAGTTTGACTAGATACAGTCAAACGATAATGAAAAGATGTTTGACCAG
* *
1317696 GGTGAGAACCATCACG
66 GGCGAGAACCATCACT
* * * ** * *
1317712 TCAAACGGGAATGAAAAGAGTTTGACTAGATATAGTCAAATAATAATGGAAAGATGTTTGACCAA
1 TCAAACAGTAATGAAAAGAGTTTGACTAGATACAGTCAAACGATAATGAAAAGATGTTTGACCAG
* * * * *
1317777 GGTGAAAACCGTTACG
66 GGCGAGAACCATCACT
* * * * * * * *
1317793 TCAAACATTATTGAAAATAAGTTTGAC-CGAATACAATTAAACAATAATGAAAAGATGTTTGACA
1 TCAAACAGTAATGAAAA-GAGTTTGACTAG-ATACAGTCAAACGATAATGAAAAGATGTTTGACC
1317857 AGGGCGAGAACCATCA-T
64 AGGGCGAGAACCATCACT
* * * * *
1317874 GTCAAATAGTAATGAAAAGGAGTTTGACCAGATATAGTTAAACGATAATGAAAAGATGTTTGACT
1 -TCAAACAGTAATGAAAA-GAGTTTGACTAGATACAGTCAAACGATAATGAAAAGATGTTTGACC
** * * * *
1317939 AGGGAAAAAACCGTTACA
64 AGGGCGAGAACCATCACT
* * * * *
1317957 TCAAATAGTAATGAAAAAAAGTTTGACTAGATACAGTTAAATGATAATGAAAA-ATGTTTGA-CT
1 TCAAACAGTAATG-AAAAGAGTTTGACTAGATACAGTCAAACGATAATGAAAAGATGTTTGACCA
* * * *
1318020 GGCGCAAAAACTATTACAT
65 GG-GCGAGAACCATCAC-T
* * * * * * *
1318039 T-AAATAGTGATGAAAAAAGTTTGACCAAATACAGTCAAACGATAATAAAAAGATGTTTGACTAG
1 TCAAACAGTAATGAAAAGAGTTTGACTAGATACAGTCAAACGATAATGAAAAGATGTTTGACCAG
*
1318103 GGCGAGAACCATCATT
66 GGCGAGAACCATCACT
* * * *
1318119 TCAAACAGTAATGAAAAGAGTTTGACTAGATGCAGTCAAACGATAATGAAAAGATATTTAACCAA
1 TCAAACAGTAATGAAAAGAGTTTGACTAGATACAGTCAAACGATAATGAAAAGATGTTTGACCAG
* *
1318184 GGCAAGAACCATCACA
66 GGCGAGAACCATCACT
* * * * * * *
1318200 TCAAATAGGAATGAAAATAGTTTGACTAGATGCAATCAAACGATAATAAAAAGATGTTTGACTAG
1 TCAAACAGTAATGAAAAGAGTTTGACTAGATACAGTCAAACGATAATGAAAAGATGTTTGACCAG
*
1318265 GGTGAGAACCATCACGT
66 GGCGAGAACCATCAC-T
* * * * * * *
1318282 T-AATCGAG-AATGAAAAGAGTCTGACCAGGTATAGTTAAACGATAACGAAAAGATGTTTGACCA
1 TCAAAC-AGTAATGAAAAGAGTTTGACTAGATACAGTCAAACGATAATGAAAAGATGTTTGACCA
*
1318345 GGGTGAGAA-C--CA-T
65 GGGCGAGAACCATCACT
* * * * * *
1318358 T---A-AGTCA--AATA-A-TTTGAGC-ATATATAGTCAAACGATAATGACAAGATGTTTGACTA
1 TCAAACAGTAATGAAAAGAGTTTGA-CTAGATACAGTCAAACGATAATGAAAAGATGTTTGACCA
*
1318414 AGGCGAGAACCATCA-T
65 GGGCGAGAACCATCACT
** * *
1318430 GTCAAACAGTAACAAAAAGAAGTTTGACTAGTTACAGTCAAACGATAATGAAAAAATGTTTGACC
1 -TCAAACAGTAATGAAAAG-AGTTTGACTAGATACAGTCAAACGATAATGAAAAGATGTTTGACC
* * *
1318495 AAAGG-GAAAACTATCA-T
64 -AGGGCGAGAACCATCACT
* * ** * * * *
1318512 GTTAAATAGTAACAAAAAGAAGTTTGACCAGATACAATCAAACGATAATGAAAAAATATTTGACC
1 -TCAAACAGTAATGAAAAG-AGTTTGACTAGATACAGTCAAACGATAATGAAAAGATGTTTGACC
* * * *
1318577 AAGACGAGAACCATTACG
64 AGGGCGAGAACCATCACT
* * * * *
1318595 TCAAACCGTAATGGAAATAGTTTGACCA-A-AGCAGTCAAACAATAATGAAAA-AGTGTTTGACC
1 TCAAACAGTAATGAAAAGAGTTTGACTAGATA-CAGTCAAACGATAATGAAAAGA-TGTTTGACC
** *
1318657 AGGATGAGAACCATCACA
64 AGGGCGAGAACCATCACT
* * *
1318675 TCAAACGAG-AATGAAAAGAGTTTGACTAGATACAGTTAAATGATAATGAAAATATGTTTGACCA
1 TCAAAC-AGTAATGAAAAGAGTTTGACTAGATACAGTCAAACGATAATGAAAAGATGTTTGACCA
* *
1318739 GGGCAAGAACCATCACA
65 GGGCGAGAACCATCACT
*
1318756 TCAAACAGTAATAAAAAAGAGTTTGA
1 TCAAACAGTAAT-GAAAAGAGTTTGA
1318782 TCGAATACAG
Statistics
Matches: 995, Mismatches: 195, Indels: 87
0.78 0.15 0.07
Matches are distributed among these distances:
69 42 0.04
70 3 0.00
71 3 0.00
72 5 0.01
73 2 0.00
76 3 0.00
77 4 0.00
78 2 0.00
79 5 0.01
80 106 0.11
81 446 0.45
82 297 0.30
83 75 0.08
84 2 0.00
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23
Consensus pattern (81 bp):
TCAAACAGTAATGAAAAGAGTTTGACTAGATACAGTCAAACGATAATGAAAAGATGTTTGACCAG
GGCGAGAACCATCACT
Found at i:1318511 original size:82 final size:81
Alignment explanation
Indices: 1318383--1318781 Score: 382
Period size: 82 Copynumber: 4.9 Consensus size: 81
1318373 GAGCATATAT
* * * * *
1318383 AGTCAAACGATAATGACAAGATGTTTGACTAAGGCGAGAACCATCATGTCAAACAGTAACAAAAA
1 AGTCAAACGATAATGAAAAAATGTTTGACCAAGG-GAGAACCATCACGTCAAACAGTAATAAAAA
* *
1318448 GAAGTTTGACTAGTTAC
65 GAAGTTTGACCAGATAC
* * * * * *
1318465 AGTCAAACGATAATGAAAAAATGTTTGACCAAAGGGAAAACTATCATGTTAAATAGTAACAAAAA
1 AGTCAAACGATAATGAAAAAATGTTTGACC-AAGGGAGAACCATCACGTCAAACAGTAATAAAAA
1318530 GAAGTTTGACCAGATAC
65 GAAGTTTGACCAGATAC
* * * * * **
1318547 AATCAAACGATAATGAAAAAATATTTGACCAAGACGAGAACCATTACGTCAAACCGTAATGGAAA
1 AGTCAAACGATAATGAAAAAATGTTTGACCAAG-GGAGAACCATCACGTCAAACAGTAATAAAAA
*
1318612 -TAGTTTGACCA-A-AGC
65 GAAGTTTGACCAGATA-C
* * * *
1318627 AGTCAAACAATAATGAAAAAGTGTTTGACC-AGGATGAGAACCATCACATCAAACGAG-AATGAA
1 AGTCAAACGATAATGAAAAAATGTTTGACCAAGG--GAGAACCATCACGTCAAAC-AGTAATAAA
*
1318690 AAG-AGTTTGACTAGATAC
63 AAGAAGTTTGACCAGATAC
* * * *
1318708 AGTTAAATGATAATGAAAATATGTTTGACC-AGGGCAAGAACCATCACATCAAACAGTAATAAAA
1 AGTCAAACGATAATGAAAAAATGTTTGACCAAGGG--AGAACCATCACGTCAAACAGTAATAAAA
1318772 A-AGAGTTTGA
64 AGA-AGTTTGA
1318782 TCGAATACAG
Statistics
Matches: 264, Mismatches: 39, Indels: 28
0.80 0.12 0.08
Matches are distributed among these distances:
79 4 0.02
80 63 0.24
81 69 0.26
82 124 0.47
83 4 0.02
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.21
Consensus pattern (81 bp):
AGTCAAACGATAATGAAAAAATGTTTGACCAAGGGAGAACCATCACGTCAAACAGTAATAAAAAG
AAGTTTGACCAGATAC
Found at i:1319438 original size:92 final size:92
Alignment explanation
Indices: 1319312--1319511 Score: 242
Period size: 92 Copynumber: 2.2 Consensus size: 92
1319302 GAAGCGATAT
* * * * * * *
1319312 GATTGGGAACGTGTGGTTGGGATATCTTTGCCCTATGGAAATC-GGGTTTGGTGATGCATCAATA
1 GATTGGGAATGTGTGGTTAGGATATCCTTACCCTAAGGAAATCAAGCTTT-GTGATGCATCAATA
* *
1319376 CCATCTAATGGTTGGA-TAAAGGGGATAA
65 CCATCTAATGGTTGGAGGAAA-GGGACAA
* * *
1319404 GTTTGGGAATGTGTGGTTAGGATGTCCTTACCCTAAGGAAATCAAGCTTTGTGATGCATCAATAT
1 GATTGGGAATGTGTGGTTAGGATATCCTTACCCTAAGGAAATCAAGCTTTGTGATGCATCAATAC
* *
1319469 CATCTAGTGGTTGGAGGAAAGGGACAT
66 CATCTAATGGTTGGAGGAAAGGGACAA
1319496 GATTGGGAATGTGTGG
1 GATTGGGAATGTGTGG
1319512 GTTTCACCCT
Statistics
Matches: 91, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
92 84 0.92
93 7 0.08
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.30
Consensus pattern (92 bp):
GATTGGGAATGTGTGGTTAGGATATCCTTACCCTAAGGAAATCAAGCTTTGTGATGCATCAATAC
CATCTAATGGTTGGAGGAAAGGGACAA
Found at i:1319646 original size:170 final size:170
Alignment explanation
Indices: 1319397--1319723 Score: 411
Period size: 170 Copynumber: 1.9 Consensus size: 170
1319387 TTGGATAAAG
* ** * * *
1319397 GGGATAAGTTTGGGAATGTGTGGTTAGGATGTCCTTACCCTAAGGAAATCAAGCTTTGTGATGCA
1 GGGATAAGATTGGGAATGAATGGTTAGGATATCATTACCCCAAGGAAATCAAGCTTTGTGATGCA
* * * * * * *
1319462 TCAATATCATCTAGTGGTTGGAGGAAAGGGACATGATTGGGAATGTGTGGGTTTCACCCTTTATG
66 TCAATATAATCTAGTGGTTGAAAGAAAGGGACATGATTAGGAATATGTGGGGTACACCCTTTATG
* * *
1319527 GTTATGTGATGCATTAATACCATCTAGAAGCTAAAAGAAA
131 GTCATATGATGCATCAATACCATCTAGAAGCTAAAAGAAA
* * * * * *
1319567 GGGATATGATTGGGAATGAATGGTTGGGATATCATTGCCCCAAGGAAATTAGGTTTTGTGATGCA
1 GGGATAAGATTGGGAATGAATGGTTAGGATATCATTACCCCAAGGAAATCAAGCTTTGTGATGCA
* * * *
1319632 TTAATATAATCTAGTGGTTGAAAGAAAGGGATATGATTAGGAATATGTGGGGTACACTCTTTGTG
66 TCAATATAATCTAGTGGTTGAAAGAAAGGGACATGATTAGGAATATGTGGGGTACACCCTTTATG
*
1319697 GTCATATGATGCATCAATATCATCTAG
131 GTCATATGATGCATCAATACCATCTAG
1319724 TGCTTAAAAA
Statistics
Matches: 130, Mismatches: 27, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
170 130 1.00
ACGTcount: A:0.30, C:0.11, G:0.28, T:0.31
Consensus pattern (170 bp):
GGGATAAGATTGGGAATGAATGGTTAGGATATCATTACCCCAAGGAAATCAAGCTTTGTGATGCA
TCAATATAATCTAGTGGTTGAAAGAAAGGGACATGATTAGGAATATGTGGGGTACACCCTTTATG
GTCATATGATGCATCAATACCATCTAGAAGCTAAAAGAAA
Found at i:1320975 original size:7 final size:7
Alignment explanation
Indices: 1320963--1320996 Score: 50
Period size: 8 Copynumber: 4.6 Consensus size: 7
1320953 ATTTCCTCAA
1320963 TCTTTTT
1 TCTTTTT
1320970 TCTTTTT
1 TCTTTTT
1320977 TCATTTTT
1 TC-TTTTT
1320985 TCTCTTTT
1 TCT-TTTT
1320993 TCTT
1 TCTT
1320997 ACTACTTGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 11 0.44
8 14 0.56
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (7 bp):
TCTTTTT
Found at i:1320983 original size:15 final size:16
Alignment explanation
Indices: 1320965--1320994 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
1320955 TTCCTCAATC
1320965 TTTTTTCT-TTTTTCA
1 TTTTTTCTCTTTTTCA
1320980 TTTTTTCTCTTTTTC
1 TTTTTTCTCTTTTTC
1320995 TTACTACTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTTCTCTTTTTCA
Found at i:1330728 original size:28 final size:28
Alignment explanation
Indices: 1330697--1330757 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
1330687 GTTTAAGATT
* *
1330697 TAAGACAATATGGATAAGCTTGTGTTAA
1 TAAGACAATATAGATAAGCTTGTCTTAA
*
1330725 TAAGACAATATAGATAAGGTTGTCTTAA
1 TAAGACAATATAGATAAGCTTGTCTTAA
*
1330753 CAAGA
1 TAAGA
1330758 TAATGTCTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.30
Consensus pattern (28 bp):
TAAGACAATATAGATAAGCTTGTCTTAA
Found at i:1330821 original size:28 final size:28
Alignment explanation
Indices: 1330785--1330839 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
1330775 ATGTGTTAAG
*
1330785 ATAAAATGGATAAGATTGTCTTAATAAA
1 ATAAAATGGATAAGATTGTCTAAATAAA
* *
1330813 ATAATATGGATAAGGTTGTCTAAATAA
1 ATAAAATGGATAAGATTGTCTAAATAA
1330840 GACAACGTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.47, C:0.04, G:0.16, T:0.33
Consensus pattern (28 bp):
ATAAAATGGATAAGATTGTCTAAATAAA
Found at i:1330907 original size:84 final size:84
Alignment explanation
Indices: 1330696--1330909 Score: 257
Period size: 84 Copynumber: 2.5 Consensus size: 84
1330686 TGTTTAAGAT
* * * * * *
1330696 TTAAGACAATATGGATAAGCTTGTGTTAATAAGACAATATAGATAAGGTTGTCTTAACAAGATAA
1 TTAAGACAAAATGGATAAGATTGTCTTAATAAGACAATATGGATAAGGTTGTCTAAACAAGACAA
* *
1330761 TGTCTAAAGTAAACATGTG
66 CGTCTAAAGTAAACATATG
* * * *
1330780 TTAAGATAAAATGGATAAGATTGTCTTAATAAAATAATATGGATAAGGTTGTCTAAATAAGACAA
1 TTAAGACAAAATGGATAAGATTGTCTTAATAAGACAATATGGATAAGGTTGTCTAAACAAGACAA
* **
1330845 CGTCTAAATTCGACATATG
66 CGTCTAAAGTAAACATATG
* * * *
1330864 TTAAGACAAAATGGTTAAGATTGTCTTAACAAGACATTGTGGATAA
1 TTAAGACAAAATGGATAAGATTGTCTTAATAAGACAATATGGATAA
1330910 ATTTGTTTTA
Statistics
Matches: 108, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
84 108 1.00
ACGTcount: A:0.43, C:0.08, G:0.18, T:0.31
Consensus pattern (84 bp):
TTAAGACAAAATGGATAAGATTGTCTTAATAAGACAATATGGATAAGGTTGTCTAAACAAGACAA
CGTCTAAAGTAAACATATG
Found at i:1331001 original size:28 final size:28
Alignment explanation
Indices: 1330969--1331030 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
1330959 TATCTTGTTG
*
1330969 TCTTAATAAGACAAAATGGAT-AAGCTTA
1 TCTTAACAAGACAAAATGGATGAA-CTTA
* *
1330997 TCTTAACAAGACAAGATGGATGAACTTG
1 TCTTAACAAGACAAAATGGATGAACTTA
1331025 TCTTAA
1 TCTTAA
1331031 AATATACATG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 28 0.93
29 2 0.07
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (28 bp):
TCTTAACAAGACAAAATGGATGAACTTA
Found at i:1331174 original size:50 final size:50
Alignment explanation
Indices: 1331022--1331176 Score: 238
Period size: 50 Copynumber: 3.1 Consensus size: 50
1331012 ATGGATGAAC
* *
1331022 TTGTCTTAAAATATACATGTTCAGATAAATTATCCTGATCGAATTTGGAG
1 TTGTCTTAAAGTAGACATGTTCAGATAAATTATCCTGATCGAATTTGGAG
*
1331072 TTATCTTAAAGTAGACATGTTCAGATAAATTATCCTGATCGAATTTGGAG
1 TTGTCTTAAAGTAGACATGTTCAGATAAATTATCCTGATCGAATTTGGAG
* * * * *
1331122 TTGTCTTAAAGTAGACAGGTTTAGATAAATTGTCCTGATTGAATTTAGAG
1 TTGTCTTAAAGTAGACATGTTCAGATAAATTATCCTGATCGAATTTGGAG
1331172 TTGTC
1 TTGTC
1331177 CAAATCGAGA
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 96 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (50 bp):
TTGTCTTAAAGTAGACATGTTCAGATAAATTATCCTGATCGAATTTGGAG
Found at i:1331537 original size:18 final size:18
Alignment explanation
Indices: 1331514--1331557 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
1331504 TCAAATGTTG
*
1331514 GAGATTAGGCGTTTTAAT
1 GAGATTAGGCATTTTAAT
1331532 GAGATTAGGCATTTTAAT
1 GAGATTAGGCATTTTAAT
1331550 GAGATTAG
1 GAGATTAG
1331558 TTCTTCAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.36
Consensus pattern (18 bp):
GAGATTAGGCATTTTAAT
Found at i:1336646 original size:21 final size:21
Alignment explanation
Indices: 1336613--1336653 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1336603 CTAAGTAAAA
1336613 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
1336634 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
1336654 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:1336718 original size:20 final size:20
Alignment explanation
Indices: 1336692--1336763 Score: 67
Period size: 20 Copynumber: 3.6 Consensus size: 20
1336682 AACCCTGAAA
1336692 AGTATCGATACACATTTAAAT
1 AGTATCGATACACA-TTAAAT
* **
1336713 -GTATCGATACAGATTGCAT
1 AGTATCGATACACATTAAAT
*
1336732 AGTATCGATACACA-CAAAT
1 AGTATCGATACACATTAAAT
*
1336751 ATGTATTGATACA
1 A-GTATCGATACA
1336764 GGACATTGGC
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
19 7 0.17
20 34 0.83
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.31
Consensus pattern (20 bp):
AGTATCGATACACATTAAAT
Found at i:1336817 original size:53 final size:53
Alignment explanation
Indices: 1336733--1336869 Score: 238
Period size: 53 Copynumber: 2.6 Consensus size: 53
1336723 AGATTGCATA
*
1336733 GTATCGATACACACAAATATGTATTGATACAGGACATTGGCAGTAGCCAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
1336787 GTATCGATACACACAATATGTATCGATACAGGTCATTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
1336840 GTATCGATACACAAAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
1336870 TTGGTAGTAG
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 66 0.82
54 14 0.17
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
Found at i:1336936 original size:22 final size:22
Alignment explanation
Indices: 1336911--1336966 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
1336901 TATCACTATT
1336911 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
*
1336933 CATCACTTTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
1336955 CATCACTGTTCA
1 CATCACTGTTCA
1336967 CACTATTCAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.38
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGATA
Found at i:1341574 original size:17 final size:16
Alignment explanation
Indices: 1341548--1341588 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
1341538 ATTCTTGTCT
*
1341548 TAAATAAATATTTACTC
1 TAAATAAATATATA-TC
*
1341565 TAATTAAATATATATC
1 TAAATAAATATATATC
1341581 TAAATAAA
1 TAAATAAA
1341589 GAAAAATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (16 bp):
TAAATAAATATATATC
Found at i:1343258 original size:21 final size:21
Alignment explanation
Indices: 1343232--1343307 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
1343222 CTGCCAAGAA
*
1343232 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
1343253 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
1343273 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
1343294 ATGTATCGATACAT
1 ATGTATCGATACAT
1343308 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:1343278 original size:20 final size:20
Alignment explanation
Indices: 1343253--1343325 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1343243 CATCTTTTTT
1343253 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
1343273 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
1343294 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
1343314 ATGTATCGATAC
1 ATGTATCGATAC
1343326 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:1343289 original size:41 final size:41
Alignment explanation
Indices: 1343232--1343325 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
1343222 CTGCCAAGAA
*
1343232 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1343273 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1343314 ATGTATCGATAC
1 ATGTATCGATAC
1343326 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:1346233 original size:34 final size:34
Alignment explanation
Indices: 1346190--1346259 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
1346180 TACAAAAGAT
* *
1346190 CAATGTATCGATACATTTGAGTAATGTATTGATA
1 CAATGTATCGATAAATTTGAGTAATGTATCGATA
1346224 CAATGTATCGATAAATTTGAGTAATGTATCGATA
1 CAATGTATCGATAAATTTGAGTAATGTATCGATA
1346258 CA
1 CA
1346260 TTTCCTTGGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (34 bp):
CAATGTATCGATAAATTTGAGTAATGTATCGATA
Found at i:1346315 original size:19 final size:18
Alignment explanation
Indices: 1346291--1346353 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
1346281 AGCGATACAT
1346291 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
1346310 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
*
1346323 TGTATTGATACAACACTTA
1 TGTATCGATACAA-ACTTA
1346342 TGTATCGATACA
1 TGTATCGATACA
1346354 GTTACGGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 10 0.28
14 1 0.03
16 2 0.06
18 1 0.03
19 22 0.61
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:1346324 original size:32 final size:32
Alignment explanation
Indices: 1346283--1346353 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
1346273 AGCTTCATAG
1346283 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
* *
1346315 CGATACATTGTATTGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
1346347 CGATACA
1 CGATACA
1346354 GTTACGGTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:1348884 original size:21 final size:21
Alignment explanation
Indices: 1348851--1348895 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1348841 TTGCAAGTTG
*
1348851 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1348873 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
1348893 AAA
1 AAA
1348896 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1350718 original size:15 final size:15
Alignment explanation
Indices: 1350698--1350728 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1350688 TAAAAATGTC
*
1350698 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1350713 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1350728 C
1 C
1350729 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1352983 original size:20 final size:20
Alignment explanation
Indices: 1352940--1352985 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
1352930 AAATCTTTTG
1352940 CAAAATACTCGTTTTTCACTT
1 CAAAATACTCGTTTTTCAC-T
*
1352961 CAAATTACTACGTTTTTCA-T
1 CAAAATACT-CGTTTTTCACT
1352981 CAAAA
1 CAAAA
1352986 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 8 0.36
22 9 0.41
ACGTcount: A:0.35, C:0.22, G:0.04, T:0.39
Consensus pattern (20 bp):
CAAAATACTCGTTTTTCACT
Found at i:1354637 original size:14 final size:14
Alignment explanation
Indices: 1354618--1354661 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
1354608 AAATAAATTT
1354618 TTGATATGAATTAC
1 TTGATATGAATTAC
*
1354632 TTGATA--AATT-T
1 TTGATATGAATTAC
1354643 TTGATATGAATTAC
1 TTGATATGAATTAC
1354657 TTGAT
1 TTGAT
1354662 TAAGGGGGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 6 0.24
12 4 0.16
13 4 0.16
14 11 0.44
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.48
Consensus pattern (14 bp):
TTGATATGAATTAC
Found at i:1354644 original size:25 final size:25
Alignment explanation
Indices: 1354610--1354661 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
1354600 TTATGTGCAA
1354610 ATAAATTTTTGATATGAATTACTTG
1 ATAAATTTTTGATATGAATTACTTG
1354635 ATAAATTTTTGATATGAATTACTTG
1 ATAAATTTTTGATATGAATTACTTG
1354660 AT
1 AT
1354662 TAAGGGGGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.37, C:0.04, G:0.12, T:0.48
Consensus pattern (25 bp):
ATAAATTTTTGATATGAATTACTTG
Found at i:1356614 original size:20 final size:20
Alignment explanation
Indices: 1356589--1356630 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
1356579 GTAGTGATGG
1356589 GTTTACATTACTAATTGTAT
1 GTTTACATTACTAATTGTAT
1356609 GTTTACATTACTAATTGTAT
1 GTTTACATTACTAATTGTAT
1356629 GT
1 GT
1356631 CCCTAAGTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
GTTTACATTACTAATTGTAT
Found at i:1358689 original size:112 final size:112
Alignment explanation
Indices: 1358470--1358689 Score: 248
Period size: 112 Copynumber: 2.0 Consensus size: 112
1358460 AGTTTGAGAC
* * * *
1358470 TAAATGTATTGATACATCTTGTGAATGTATCAATACATATGGTTGGCAGTAGCTACAAAATGCTA
1 TAAATGTATTGATACATCATATGAATGTATCAATACATATGGTTGGCAGCAGCTACAAAATCCTA
* * * * *
1358535 AAACCCTTATTTTTATCGATACAAGTTGAAATTTATCGATACACAATG
66 AAACCCTTATTTGTATCAATACAAG-CGAAATGTATCAATACACAATG
* * * *
1358583 TAAATGTATTGATACATCATAT-AGTGTCTCAATACATTTTGTTGGCAGCAGCTA-AACAATTCC
1 TAAATGTATTGATACATCATATGAATGTATCAATACATATGGTTGGCAGCAGCTACAA-AA-TCC
* *
1358646 TGAAACCCTTCTTTGTATCAATACACA-CGAAATGTATCAATACA
64 TAAAACCCTTATTTGTATCAATACA-AGCGAAATGTATCAATACA
1358690 ATACAGATTG
Statistics
Matches: 89, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
111 2 0.02
112 43 0.48
113 43 0.48
114 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.34
Consensus pattern (112 bp):
TAAATGTATTGATACATCATATGAATGTATCAATACATATGGTTGGCAGCAGCTACAAAATCCTA
AAACCCTTATTTGTATCAATACAAGCGAAATGTATCAATACACAATG
Found at i:1364578 original size:48 final size:48
Alignment explanation
Indices: 1364511--1364603 Score: 143
Period size: 48 Copynumber: 1.9 Consensus size: 48
1364501 ATATGTGGGT
1364511 TTTTCTAGAATGTAACAATACAATGCAA-AATATATCGATACATCTGGA
1 TTTTCTAGAATGTAACAATACAATG-AATAATATATCGATACATCTGGA
* * *
1364559 TTTTCTAGATTGTATCAATACAATGAATAATGTATCGATACATCT
1 TTTTCTAGAATGTAACAATACAATGAATAATATATCGATACATCT
1364604 AGGTTTCCAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
47 2 0.05
48 39 0.95
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (48 bp):
TTTTCTAGAATGTAACAATACAATGAATAATATATCGATACATCTGGA
Found at i:1365101 original size:24 final size:24
Alignment explanation
Indices: 1365057--1365105 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
1365047 AAGGCCTCAA
*
1365057 CCACCCCTATAAAGAACCCTTTGC
1 CCACCCCTACAAAGAACCCTTTGC
*
1365081 CCACCCCTACCAA-AACACCTTTGC
1 CCACCCCTACAAAGAAC-CCTTTGC
1365105 C
1 C
1365106 AAGCGTTCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 3 0.14
24 19 0.86
ACGTcount: A:0.29, C:0.47, G:0.06, T:0.18
Consensus pattern (24 bp):
CCACCCCTACAAAGAACCCTTTGC
Found at i:1369521 original size:21 final size:21
Alignment explanation
Indices: 1369491--1369548 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
1369481 TATTTAATGA
* *
1369491 AAATGCATCGATACATTATGT
1 AAATGTATCGATACATTATAT
* *
1369512 AAATGTATCGATAAATCATAT
1 AAATGTATCGATACATTATAT
*
1369533 -AGTGTATCGATACATT
1 AAATGTATCGATACATT
1369549 TCGTTGGCAG
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 13 0.43
21 17 0.57
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (21 bp):
AAATGTATCGATACATTATAT
Found at i:1371324 original size:19 final size:19
Alignment explanation
Indices: 1371300--1371399 Score: 107
Period size: 19 Copynumber: 5.9 Consensus size: 19
1371290 AATTCAACAA
1371300 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
1371319 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
1371334 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
1371351 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
1371366 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
1371383 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
1371400 TTAGCTACTG
Statistics
Matches: 69, Mismatches: 0, Indels: 24
0.74 0.00 0.26
Matches are distributed among these distances:
13 22 0.32
15 4 0.06
17 4 0.06
19 39 0.57
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:1371339 original size:13 final size:13
Alignment explanation
Indices: 1371321--1371377 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
1371311 ACATAAGTTT
1371321 TGTATCGATACAA
1 TGTATCGATACAA
1371334 TGTATCGATACATAA
1 TGTATCGATAC--AA
1371349 GTTTTGTATCGATACAA
1 ----TGTATCGATACAA
1371366 TGTATCGATACA
1 TGTATCGATACA
1371378 TAAGTATTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1371343 original size:32 final size:32
Alignment explanation
Indices: 1371302--1371396 Score: 181
Period size: 32 Copynumber: 3.0 Consensus size: 32
1371292 TTCAACAATT
1371302 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTTTTGTATCGATACAA
1371334 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTTTTGTATCGATACAA
*
1371366 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTTTTGTATCGATACA
1371397 TAATTAGCTA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTTTTGTATCGATACAA
Found at i:1371457 original size:13 final size:13
Alignment explanation
Indices: 1371439--1371464 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1371429 CATTTTTCTG
1371439 TGTATCGATACAT
1 TGTATCGATACAT
1371452 TGTATCGATACAT
1 TGTATCGATACAT
1371465 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1371461 original size:33 final size:33
Alignment explanation
Indices: 1371419--1371485 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1371409 GCCAAGGAAA
***
1371419 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
1371452 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
1371485 T
1 T
1371486 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:1374009 original size:51 final size:51
Alignment explanation
Indices: 1373949--1374172 Score: 234
Period size: 53 Copynumber: 4.3 Consensus size: 51
1373939 TTATTTCCGA
* * * *** *
1373949 GGGGATACTCCAACCCTGACTTTATTTCCAAAATATTGATTTTTCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATC
* * * *
1374000 GGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTT-CACAATC
* * *
1374052 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAA-TTTTCCCTTTAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCAC---AATC
* *
1374105 GGGGATACTCCAACTCCGATTTTATTTCCAAAAAATACCAATTTTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCC--AAAACACCAATTTTTCACAATC
*
1374158 GAGGATACTCCAACC
1 GGGGATACTCCAACC
1374173 TCGTTATTTC
Statistics
Matches: 145, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
50 2 0.01
51 40 0.28
52 41 0.28
53 47 0.32
55 9 0.06
56 6 0.04
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATC
Found at i:1374128 original size:53 final size:52
Alignment explanation
Indices: 1373949--1374172 Score: 218
Period size: 52 Copynumber: 4.3 Consensus size: 52
1373939 TTATTTCCGA
* ** * *** *
1373949 GGGGATACTCCAACCCTGACTTTATTTCCAAAATATTGATTTT-TCATAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTCCCATAATC
* * * * *
1374000 GGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTCCCATAATC
* *
1374052 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCCTTTAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTCCC-ATAATC
* * * * *
1374105 GGGGATACTCCAACTCCGATTTTATTTCCAAAAAATACCAATTTT-TCACAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCC--AAAACACCAATTTTCCCATAATC
*
1374158 GAGGATACTCCAACC
1 GGGGATACTCCAACC
1374173 TCGTTATTTC
Statistics
Matches: 143, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
51 35 0.24
52 47 0.33
53 47 0.33
54 1 0.01
55 13 0.09
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (52 bp):
GGGGATACTCCAACCCCGGTTTTATTTCCAAAACACCAATTTTCCCATAATC
Found at i:1381996 original size:13 final size:13
Alignment explanation
Indices: 1381956--1382008 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
1381946 CCGTTGCAAG
1381956 CAATGTATCGATA
1 CAATGTATCGATA
1381969 CAA--T-TC-AT-
1 CAATGTATCGATA
1381977 C-ATGTATCGATA
1 CAATGTATCGATA
1381989 CAATGTATCGATA
1 CAATGTATCGATA
*
1382002 CATTGTA
1 CAATGTA
1382009 CCATGTATCG
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.09
10 4 0.12
11 3 0.09
12 1 0.03
13 20 0.61
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:1381998 original size:33 final size:33
Alignment explanation
Indices: 1381956--1382024 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
1381946 CCGTTGCAAG
*
1381956 CAATGTATCGATACAATT-CATCATGTATCGATA
1 CAATGTATCGATAC-ATTGCACCATGTATCGATA
*
1381989 CAATGTATCGATACATTGTACCATGTATCGATA
1 CAATGTATCGATACATTGCACCATGTATCGATA
1382022 CAA
1 CAA
1382025 ACAGTGGTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 3 0.09
33 30 0.91
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (33 bp):
CAATGTATCGATACATTGCACCATGTATCGATA
Found at i:1382072 original size:13 final size:13
Alignment explanation
Indices: 1382054--1382079 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1382044 TGCCAATCTC
1382054 ATGTATCGATACA
1 ATGTATCGATACA
1382067 ATGTATCGATACA
1 ATGTATCGATACA
1382080 TCTGGGTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1382642 original size:22 final size:21
Alignment explanation
Indices: 1382591--1382666 Score: 107
Period size: 21 Copynumber: 3.6 Consensus size: 21
1382581 AGTTTTCGTT
*
1382591 TTTCTTCCCCTTAATCAAAAA
1 TTTCTCCCCCTTAATCAAAAA
* *
1382612 TTTATCCCCTTTAATCAAAAA
1 TTTCTCCCCCTTAATCAAAAA
*
1382633 TTTCTCCCCCTTAATCAAAGCA
1 TTTCTCCCCCTTAATCAAA-AA
1382655 TTTCTCCCCCTT
1 TTTCTCCCCCTT
1382667 TGTCAAAACT
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
21 35 0.73
22 13 0.27
ACGTcount: A:0.28, C:0.33, G:0.01, T:0.38
Consensus pattern (21 bp):
TTTCTCCCCCTTAATCAAAAA
Found at i:1391090 original size:13 final size:13
Alignment explanation
Indices: 1391050--1391102 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
1391040 CCGTTGCAAG
1391050 CAATGTATCGATA
1 CAATGTATCGATA
1391063 CAA--T-TC-AT-
1 CAATGTATCGATA
1391071 C-ATGTATCGATA
1 CAATGTATCGATA
1391083 CAATGTATCGATA
1 CAATGTATCGATA
*
1391096 CATTGTA
1 CAATGTA
1391103 CCATGTATCG
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.09
10 4 0.12
11 3 0.09
12 1 0.03
13 20 0.61
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:1391092 original size:33 final size:33
Alignment explanation
Indices: 1391050--1391118 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
1391040 CCGTTGCAAG
*
1391050 CAATGTATCGATACAATT-CATCATGTATCGATA
1 CAATGTATCGATAC-ATTGCACCATGTATCGATA
*
1391083 CAATGTATCGATACATTGTACCATGTATCGATA
1 CAATGTATCGATACATTGCACCATGTATCGATA
1391116 CAA
1 CAA
1391119 ACAGTGGTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 3 0.09
33 30 0.91
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (33 bp):
CAATGTATCGATACATTGCACCATGTATCGATA
Found at i:1391166 original size:13 final size:13
Alignment explanation
Indices: 1391148--1391173 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1391138 TGCCAATCTC
1391148 ATGTATCGATACA
1 ATGTATCGATACA
1391161 ATGTATCGATACA
1 ATGTATCGATACA
1391174 TCTGGGTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1391750 original size:21 final size:20
Alignment explanation
Indices: 1391685--1391756 Score: 99
Period size: 21 Copynumber: 3.5 Consensus size: 20
1391675 AGTTTTCGTT
1391685 TTTCTTCCCCTTAATCAAAAA
1 TTTC-TCCCCTTAATCAAAAA
*
1391706 TTTATCCCCTTTAATCAAAAA
1 TTTCTCCCC-TTAATCAAAAA
*
1391727 TTTCTCCCCTTAATCAAAGCA
1 TTTCTCCCCTTAATCAAA-AA
1391748 TTTCTCCCC
1 TTTCTCCCC
1391757 CTTTGTCAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
20 14 0.30
21 32 0.70
ACGTcount: A:0.29, C:0.32, G:0.01, T:0.38
Consensus pattern (20 bp):
TTTCTCCCCTTAATCAAAAA
Found at i:1393839 original size:20 final size:19
Alignment explanation
Indices: 1393785--1393840 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
1393775 AAAACCCTTA
*
1393785 AAAGTATCGATACACAGTTC
1 AAAGTATCGATACA-TGTTC
1393805 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
1393825 AATGTATCGATACATG
1 AAAGTATCGATACATG
1393841 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:1393928 original size:13 final size:13
Alignment explanation
Indices: 1393910--1393935 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1393900 TACACAATAT
1393910 ATGTATCGATACA
1 ATGTATCGATACA
1393923 ATGTATCGATACA
1 ATGTATCGATACA
1393936 CAAAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1393933 original size:32 final size:33
Alignment explanation
Indices: 1393892--1393956 Score: 105
Period size: 34 Copynumber: 2.0 Consensus size: 33
1393882 TAGCCAAACT
*
1393892 TGTATCGATACAC-AATATATGTATCGATACAA
1 TGTATCGATACACAAAAATATGTATCGATACAA
1393924 TGTATCGATACACAAAAAATATGTATCGATACA
1 TGTATCGATACAC-AAAAATATGTATCGATACA
1393957 TTGGCTTGCA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 13 0.43
34 17 0.57
ACGTcount: A:0.43, C:0.15, G:0.12, T:0.29
Consensus pattern (33 bp):
TGTATCGATACACAAAAATATGTATCGATACAA
Found at i:1396186 original size:21 final size:21
Alignment explanation
Indices: 1396153--1396201 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
1396143 TTGCAAGTTG
* *
1396153 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-AA
*
1396175 AAATAATG-AGTTAGCTAAAA
1 AAATAAAGAAGTTAGCTAAAA
1396195 AAATAAA
1 AAATAAA
1396202 AACTTGCATA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 7 0.30
21 9 0.39
22 7 0.30
ACGTcount: A:0.57, C:0.04, G:0.16, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAAA
Found at i:1398019 original size:15 final size:16
Alignment explanation
Indices: 1397997--1398034 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
1397987 GATAAAAATG
*
1397997 TCCAAAATGAGGAAGC
1 TCCAAAATGAAGAAGC
1398013 T-CAAAATGAAGAAGC
1 TCCAAAATGAAGAAGC
1398028 TCCAAAA
1 TCCAAAA
1398035 GAAATTGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.50, C:0.18, G:0.18, T:0.13
Consensus pattern (16 bp):
TCCAAAATGAAGAAGC
Found at i:1400127 original size:13 final size:13
Alignment explanation
Indices: 1400109--1400146 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
1400099 CATTTTTCTT
1400109 TGTATCGATACAA
1 TGTATCGATACAA
*
1400122 TGTATCGATACAC
1 TGTATCGATACAA
1400135 TGTATCGATACA
1 TGTATCGATACA
1400147 GAGGGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1400301 original size:20 final size:20
Alignment explanation
Indices: 1400258--1400303 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
1400248 AAATCTTTTG
1400258 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
1400279 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
1400299 CAAAA
1 CAAAA
1400304 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:1401985 original size:29 final size:29
Alignment explanation
Indices: 1401942--1401997 Score: 96
Period size: 29 Copynumber: 1.9 Consensus size: 29
1401932 ATTTTTGATA
1401942 TGAATTACTTGATTAAGGGGGAGAATGCG
1 TGAATTACTTGATTAAGGGGGAGAATGCG
1401971 TGAATTATCTT-ATTAAGGGGGAGAATG
1 TGAATTA-CTTGATTAAGGGGGAGAATG
1401998 TACGAATTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 23 0.88
30 3 0.12
ACGTcount: A:0.32, C:0.05, G:0.32, T:0.30
Consensus pattern (29 bp):
TGAATTACTTGATTAAGGGGGAGAATGCG
Found at i:1402004 original size:29 final size:29
Alignment explanation
Indices: 1401943--1402005 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
1401933 TTTTTGATAT
**
1401943 GAATTACTTGATTAAGGGGGAGAATGCGT
1 GAATTACTTGATTAAGGGGGAGAATGCAC
*
1401972 GAATTATCTT-ATTAAGGGGGAGAATGTAC
1 GAATTA-CTTGATTAAGGGGGAGAATGCAC
1402001 GAATT
1 GAATT
1402006 TGTTAAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 27 0.90
30 3 0.10
ACGTcount: A:0.33, C:0.06, G:0.30, T:0.30
Consensus pattern (29 bp):
GAATTACTTGATTAAGGGGGAGAATGCAC
Found at i:1402561 original size:20 final size:20
Alignment explanation
Indices: 1402536--1402587 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
1402526 AAAACCCTTA
1402536 AAAGTATCGATACACAGTT-C
1 AAAGTATCGATACA-AGTTGC
*
1402556 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACAAGTTGC
*
1402576 AATGTATCGATA
1 AAAGTATCGATA
1402588 AATGAAAAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 3 0.10
20 26 0.90
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (20 bp):
AAAGTATCGATACAAGTTGC
Found at i:1402667 original size:19 final size:19
Alignment explanation
Indices: 1402643--1402707 Score: 70
Period size: 21 Copynumber: 3.6 Consensus size: 19
1402633 TAGCCAAACT
1402643 TGTATCGATACACAAAATA
1 TGTATCGATACACAAAATA
1402662 TGTATCGAT--AC---A-A
1 TGTATCGATACACAAAATA
1402675 TGTATCGATACACAAAAAATA
1 TGTATCGATACAC--AAAATA
1402696 TGTATCGATACA
1 TGTATCGATACA
1402708 TTGGCTTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 10 0.26
14 1 0.03
15 2 0.05
17 2 0.05
19 9 0.24
20 1 0.03
21 13 0.34
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (19 bp):
TGTATCGATACACAAAATA
Found at i:1402679 original size:13 final size:13
Alignment explanation
Indices: 1402661--1402686 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1402651 TACACAAAAT
1402661 ATGTATCGATACA
1 ATGTATCGATACA
1402674 ATGTATCGATACA
1 ATGTATCGATACA
1402687 CAAAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1402684 original size:32 final size:33
Alignment explanation
Indices: 1402643--1402707 Score: 114
Period size: 34 Copynumber: 2.0 Consensus size: 33
1402633 TAGCCAAACT
1402643 TGTATCGATACAC-AAAATATGTATCGATACAA
1 TGTATCGATACACAAAAATATGTATCGATACAA
1402675 TGTATCGATACACAAAAAATATGTATCGATACA
1 TGTATCGATACAC-AAAAATATGTATCGATACA
1402708 TTGGCTTGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 13 0.42
34 18 0.58
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAATATGTATCGATACAA
Found at i:1409787 original size:13 final size:13
Alignment explanation
Indices: 1409769--1409793 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1409759 CGTTACAAGC
1409769 AATGTATCGATAT
1 AATGTATCGATAT
1409782 AATGTATCGATA
1 AATGTATCGATA
1409794 CAAAGCATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
AATGTATCGATAT
Found at i:1410224 original size:150 final size:150
Alignment explanation
Indices: 1410052--1410356 Score: 610
Period size: 150 Copynumber: 2.0 Consensus size: 150
1410042 ATTTTATTCA
1410052 ATCTTTGTTATATCAAAATCAAGATCCTAACAAAATTGTTTTCTTAAAAAAAATTATTAAGACAA
1 ATCTTTGTTATATCAAAATCAAGATCCTAACAAAATTGTTTTCTTAAAAAAAATTATTAAGACAA
1410117 TGTTCCGTATCGGTATCCCTCAAGTGCTCGATATTTAATATCCTTTTTAAATTCAAACCCGAATA
66 TGTTCCGTATCGGTATCCCTCAAGTGCTCGATATTTAATATCCTTTTTAAATTCAAACCCGAATA
1410182 TTTTATCCTTACATTTCGTC
131 TTTTATCCTTACATTTCGTC
1410202 ATCTTTGTTATATCAAAATCAAGATCCTAACAAAATTGTTTTCTTAAAAAAAATTATTAAGACAA
1 ATCTTTGTTATATCAAAATCAAGATCCTAACAAAATTGTTTTCTTAAAAAAAATTATTAAGACAA
1410267 TGTTCCGTATCGGTATCCCTCAAGTGCTCGATATTTAATATCCTTTTTAAATTCAAACCCGAATA
66 TGTTCCGTATCGGTATCCCTCAAGTGCTCGATATTTAATATCCTTTTTAAATTCAAACCCGAATA
1410332 TTTTATCCTTACATTTCGTC
131 TTTTATCCTTACATTTCGTC
1410352 ATCTT
1 ATCTT
1410357 CTTGGGATAC
Statistics
Matches: 155, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
150 155 1.00
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.39
Consensus pattern (150 bp):
ATCTTTGTTATATCAAAATCAAGATCCTAACAAAATTGTTTTCTTAAAAAAAATTATTAAGACAA
TGTTCCGTATCGGTATCCCTCAAGTGCTCGATATTTAATATCCTTTTTAAATTCAAACCCGAATA
TTTTATCCTTACATTTCGTC
Found at i:1412829 original size:48 final size:48
Alignment explanation
Indices: 1412758--1412869 Score: 224
Period size: 48 Copynumber: 2.3 Consensus size: 48
1412748 CATCTGACTT
1412758 TAATACTAGGTCATCTTGTATAAGGATTATCATATTTTGATTTCTTAG
1 TAATACTAGGTCATCTTGTATAAGGATTATCATATTTTGATTTCTTAG
1412806 TAATACTAGGTCATCTTGTATAAGGATTATCATATTTTGATTTCTTAG
1 TAATACTAGGTCATCTTGTATAAGGATTATCATATTTTGATTTCTTAG
1412854 TAATACTAGGTCATCT
1 TAATACTAGGTCATCT
1412870 GACTTTCATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 64 1.00
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (48 bp):
TAATACTAGGTCATCTTGTATAAGGATTATCATATTTTGATTTCTTAG
Found at i:1414809 original size:35 final size:34
Alignment explanation
Indices: 1414763--1414847 Score: 134
Period size: 34 Copynumber: 2.5 Consensus size: 34
1414753 CTATGTTAAT
*
1414763 CAACAAGTGCAGGGAATTTTTTTTATTTTCGACAG
1 CAACAAGTGCAGGGAATTTTTTTT-TTTTCGACAC
* *
1414798 CAACAAGTGCAGAGAATTTTTTTTTTTTCGATAC
1 CAACAAGTGCAGGGAATTTTTTTTTTTTCGACAC
1414832 CAACAAGTGCAGGGAA
1 CAACAAGTGCAGGGAA
1414848 CTAATCCATC
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
34 23 0.50
35 23 0.50
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (34 bp):
CAACAAGTGCAGGGAATTTTTTTTTTTTCGACAC
Found at i:1414826 original size:34 final size:35
Alignment explanation
Indices: 1414763--1414843 Score: 128
Period size: 35 Copynumber: 2.3 Consensus size: 35
1414753 CTATGTTAAT
* *
1414763 CAACAAGTGCAGGGAATTTTTTTTATTTTCGACAG
1 CAACAAGTGCAGAGAATTTTTTTTATTTTCGACAC
*
1414798 CAACAAGTGCAGAGAATTTTTTTT-TTTTCGATAC
1 CAACAAGTGCAGAGAATTTTTTTTATTTTCGACAC
1414832 CAACAAGTGCAG
1 CAACAAGTGCAG
1414844 GGAACTAATC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
34 20 0.47
35 23 0.53
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (35 bp):
CAACAAGTGCAGAGAATTTTTTTTATTTTCGACAC
Found at i:1417081 original size:12 final size:12
Alignment explanation
Indices: 1417066--1417100 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
1417056 AAGTGAGTTT
1417066 TTAAATATTTTA
1 TTAAATATTTTA
*
1417078 TTAAATATATT-
1 TTAAATATTTTA
1417089 TTAAATATTTTA
1 TTAAATATTTTA
1417101 AATATTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
TTAAATATTTTA
Found at i:1417322 original size:36 final size:34
Alignment explanation
Indices: 1417243--1417331 Score: 92
Period size: 36 Copynumber: 2.6 Consensus size: 34
1417233 AATATGATTG
* * *
1417243 AAATAATAAATTAT-T-TAAAAATTAATTTTAAA
1 AAATAATTAATTATATATATAAATTAATTTCAAA
*
1417275 AAATAAATTAATTATATATATAAATATAGATTTCAAT
1 AAAT-AATTAATTATATATATAAAT-TA-ATTTCAAA
*
1417312 AAATAATTAATTAAATATAT
1 AAATAATTAATTATATATAT
1417332 TAAAAATATA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
32 4 0.09
33 9 0.19
34 1 0.02
35 6 0.13
36 17 0.36
37 10 0.21
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (34 bp):
AAATAATTAATTATATATATAAATTAATTTCAAA
Found at i:1417472 original size:17 final size:17
Alignment explanation
Indices: 1417447--1417489 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
1417437 AAAATAAAAA
* *
1417447 AAATATAAAATCAATTT
1 AAATTTAAAATCAATCT
1417464 AAATTTAAAATCAATCT
1 AAATTTAAAATCAATCT
1417481 AAATTTAAA
1 AAATTTAAA
1417490 CCCAAATCTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (17 bp):
AAATTTAAAATCAATCT
Found at i:1417527 original size:6 final size:6
Alignment explanation
Indices: 1417502--1417584 Score: 58
Period size: 6 Copynumber: 15.3 Consensus size: 6
1417492 CAAATCTGAA
* *
1417502 TAAATT CAAATT TAAA-- -AAATT TAAATT TAAA-- AAAATT TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
* * *
1417545 TAAA-- TAAATC TAAACT CAAA-- TAAATT TAAATT TAAATT TA
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TA
1417585 TTCAAACTCG
Statistics
Matches: 60, Mismatches: 8, Indels: 18
0.70 0.09 0.21
Matches are distributed among these distances:
3 3 0.05
4 10 0.17
6 47 0.78
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (6 bp):
TAAATT
Found at i:1417581 original size:16 final size:16
Alignment explanation
Indices: 1417500--1417581 Score: 112
Period size: 16 Copynumber: 5.2 Consensus size: 16
1417490 CCCAAATCTG
*
1417500 AATAAATTCAAATTTA
1 AATAAATTTAAATTTA
1417516 AA-AAATTTAAATTTA
1 AATAAATTTAAATTTA
*
1417531 AAAAAATTTAAATTTA
1 AATAAATTTAAATTTA
* * *
1417547 AATAAATCTAAACTCA
1 AATAAATTTAAATTTA
1417563 AATAAATTTAAATTTA
1 AATAAATTTAAATTTA
1417579 AAT
1 AAT
1417582 TTATTCAAAC
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
15 14 0.25
16 43 0.75
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (16 bp):
AATAAATTTAAATTTA
Found at i:1422355 original size:22 final size:23
Alignment explanation
Indices: 1422328--1422433 Score: 92
Period size: 22 Copynumber: 4.5 Consensus size: 23
1422318 AATAAAAAAC
1422328 TAAATATAATA-AATATAATATT
1 TAAATATAATATAATATAATATT
1422350 TAAATATAAT-TAATATAATAATT
1 TAAATATAATATAATATAAT-ATT
* * **
1422373 T-TATTTATATATAATATTTTATT
1 TAAATATA-ATATAATATAATATT
*
1422396 TAAGATTTATATATAATATAATTATT
1 TAA-ATATA-ATATAATATAA-TATT
*
1422422 TATATATAATAT
1 TAAATATAATAT
1422434 TTATATTTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 12
0.76 0.10 0.13
Matches are distributed among these distances:
22 22 0.32
23 10 0.15
24 11 0.16
25 19 0.28
26 6 0.09
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (23 bp):
TAAATATAATATAATATAATATT
Found at i:1422386 original size:19 final size:18
Alignment explanation
Indices: 1422362--1422397 Score: 63
Period size: 18 Copynumber: 1.9 Consensus size: 18
1422352 AATATAATTA
1422362 ATATAATAATTTTATTTAT
1 ATATAAT-ATTTTATTTAT
1422381 ATATAATATTTTATTTA
1 ATATAATATTTTATTTA
1422398 AGATTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
ATATAATATTTTATTTAT
Found at i:1422409 original size:25 final size:25
Alignment explanation
Indices: 1422375--1422479 Score: 98
Period size: 25 Copynumber: 4.3 Consensus size: 25
1422365 TAATAATTTT
1422375 ATTTATATATAATATTTTATTTAAG
1 ATTTATATATAATATTTTATTTAAG
*
1422400 ATTTATATATAATA---TAATT---
1 ATTTATATATAATATTTTATTTAAG
1422419 ATTTATATATAATATTTATATTTAAG
1 ATTTATATATAATATTT-TATTTAAG
* *
1422445 ATTTTTATATATAATAATTTATATTATG
1 A--TTTATATATAATATTTTAT-TTAAG
1422473 -TTTATAT
1 ATTTATAT
1422480 TTATATAAAA
Statistics
Matches: 66, Mismatches: 4, Indels: 20
0.73 0.04 0.22
Matches are distributed among these distances:
19 14 0.21
22 4 0.06
23 4 0.06
25 21 0.32
26 1 0.02
27 3 0.05
28 19 0.29
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (25 bp):
ATTTATATATAATATTTTATTTAAG
Found at i:1422425 original size:44 final size:42
Alignment explanation
Indices: 1422373--1422482 Score: 154
Period size: 44 Copynumber: 2.6 Consensus size: 42
1422363 TATAATAATT
1422373 TTATTTATATATAATATTT-TATTTAAGATTTATATATAATATAA
1 TTATTTATATATAATATTTATATTTAAGATTT-T-TAT-ATATAA
1422417 TTATTTATATATAATATTTATATTTAAGATTTTTATATATAA
1 TTATTTATATATAATATTTATATTTAAGATTTTTATATATAA
* *
1422459 TAATTTATAT-T-ATGTTTATATTTA
1 TTATTTATATATAATATTTATATTTA
1422483 TATAAAAAAT
Statistics
Matches: 63, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
40 12 0.19
41 1 0.02
42 15 0.24
43 3 0.05
44 20 0.32
45 12 0.19
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (42 bp):
TTATTTATATATAATATTTATATTTAAGATTTTTATATATAA
Found at i:1422436 original size:13 final size:13
Alignment explanation
Indices: 1422374--1422468 Score: 71
Period size: 13 Copynumber: 7.7 Consensus size: 13
1422364 ATAATAATTT
1422374 TATTTATATATAA
1 TATTTATATATAA
*
1422387 TATTT-TATTTAA
1 TATTTATATATAA
*
1422399 GATTTATATAT-A
1 TATTTATATATAA
1422411 -A--TATA-AT--
1 TATTTATATATAA
1422418 TATTTATATATAA
1 TATTTATATATAA
*
1422431 TATTTATATTTAAGA
1 TATTTATATAT-A-A
*
1422446 TTTTTATATATAA
1 TATTTATATATAA
1422459 TAATTTATAT
1 T-ATTTATAT
1422469 TATGTTTATA
Statistics
Matches: 65, Mismatches: 7, Indels: 19
0.71 0.08 0.21
Matches are distributed among these distances:
8 3 0.05
9 4 0.06
10 4 0.06
11 3 0.05
12 11 0.17
13 21 0.32
14 9 0.14
15 10 0.15
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (13 bp):
TATTTATATATAA
Found at i:1422440 original size:19 final size:19
Alignment explanation
Indices: 1422340--1422442 Score: 68
Period size: 19 Copynumber: 4.9 Consensus size: 19
1422330 AATATAATAA
1422340 ATATAATATTTAAATATAATTA-
1 ATATAATATTT--ATAT--TTAT
1422362 ATATAATAATTT-TATTTAT
1 ATATAAT-ATTTATATTTAT
1422381 ATATAATATTTTATTTAAGATTTAT
1 ATATAATA-TTTA--T---ATTTAT
*
1422406 ATATAATA-TAATTATTTAT
1 ATATAATATTTA-TATTTAT
1422425 ATATAATATTTATATTTA
1 ATATAATATTTATATTTA
1422443 AGATTTTTAT
Statistics
Matches: 69, Mismatches: 2, Indels: 23
0.73 0.02 0.24
Matches are distributed among these distances:
18 4 0.06
19 30 0.43
20 5 0.07
22 10 0.14
23 6 0.09
25 14 0.20
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (19 bp):
ATATAATATTTATATTTAT
Found at i:1423327 original size:21 final size:21
Alignment explanation
Indices: 1423287--1423355 Score: 90
Period size: 21 Copynumber: 3.4 Consensus size: 21
1423277 TATAATATAA
*
1423287 AATA-ATATAAATATTATATT
1 AATATATAAAAATATTATATT
1423307 AATATATAAAAATAATT-TATT
1 AATATATAAAAAT-ATTATATT
*
1423328 AATATATTAAAAT-TTATATT
1 AATATATAAAAATATTATATT
1423348 AATATATA
1 AATATATA
1423356 TTATTTTAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
19 2 0.05
20 15 0.35
21 23 0.53
22 3 0.07
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
AATATATAAAAATATTATATT
Found at i:1425419 original size:20 final size:20
Alignment explanation
Indices: 1425394--1425431 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
1425384 TACTACCAGT
*
1425394 TTCATGTATTGATACAATTC
1 TTCATGTATCGATACAATTC
1425414 TTCATGTATCGATACAAT
1 TTCATGTATCGATACAAT
1425432 ATCGATACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.42
Consensus pattern (20 bp):
TTCATGTATCGATACAATTC
Found at i:1425452 original size:30 final size:32
Alignment explanation
Indices: 1425416--1425491 Score: 111
Period size: 30 Copynumber: 2.4 Consensus size: 32
1425406 TACAATTCTT
*
1425416 CATGTATCGATACAA-TATCGATACAATG-AA
1 CATGTATCGATACAAGTATCGATACAAAGCAA
1425446 CATGTATCGATACAATGTATCGATACAAAGCAA
1 CATGTATCGATACAA-GTATCGATACAAAGCAA
*
1425479 TATGTATCGATAC
1 CATGTATCGATAC
1425492 TTGTAGGCTT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
30 15 0.37
32 12 0.29
33 14 0.34
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (32 bp):
CATGTATCGATACAAGTATCGATACAAAGCAA
Found at i:1425465 original size:13 final size:13
Alignment explanation
Indices: 1425447--1425473 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1425437 TACAATGAAC
1425447 ATGTATCGATACA
1 ATGTATCGATACA
1425460 ATGTATCGATACA
1 ATGTATCGATACA
1425473 A
1 A
1425474 AGCAATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1425959 original size:18 final size:19
Alignment explanation
Indices: 1425930--1425967 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
1425920 ACGCACCAAA
*
1425930 ATTTTCCATAAAATTAATT
1 ATTTTCCATAAAATGAATT
1425949 ATTTT-CATAAAATGAATT
1 ATTTTCCATAAAATGAATT
1425967 A
1 A
1425968 ATCGATTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.45
Consensus pattern (19 bp):
ATTTTCCATAAAATGAATT
Found at i:1426747 original size:19 final size:20
Alignment explanation
Indices: 1426723--1426772 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
1426713 CGATATAATG
**
1426723 TATCGATACATGTTC-ATTA
1 TATCGATACATGGACAATTA
*
1426742 TATCGATACATGGACAATTG
1 TATCGATACATGGACAATTA
1426762 TATCGATACAT
1 TATCGATACAT
1426773 AAAACTAGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 13 0.48
20 14 0.52
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (20 bp):
TATCGATACATGGACAATTA
Found at i:1426767 original size:20 final size:19
Alignment explanation
Indices: 1426721--1426772 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
1426711 ATCGATATAA
**
1426721 TGTATCGATACATGTTCAT
1 TGTATCGATACATGGACAT
*
1426740 TATATCGATACATGGACAAT
1 TGTATCGATACATGGAC-AT
1426760 TGTATCGATACAT
1 TGTATCGATACAT
1426773 AAAACTAGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (19 bp):
TGTATCGATACATGGACAT
Found at i:1426837 original size:13 final size:13
Alignment explanation
Indices: 1426819--1426870 Score: 53
Period size: 13 Copynumber: 4.5 Consensus size: 13
1426809 GATACATGGC
*
1426819 ACATTGTATTGAT
1 ACATTGTATCGAT
1426832 ACATTGTATCGAT
1 ACATTGTATCGAT
1426845 ACA-TG-AT-G--
1 ACATTGTATCGAT
1426853 A-ATTGTATCGAT
1 ACATTGTATCGAT
1426865 ACATTG
1 ACATTG
1426871 CTTCTAACGA
Statistics
Matches: 32, Mismatches: 1, Indels: 12
0.71 0.02 0.27
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 2 0.06
11 2 0.06
12 3 0.09
13 19 0.59
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (13 bp):
ACATTGTATCGAT
Found at i:1426844 original size:33 final size:32
Alignment explanation
Indices: 1426802--1426870 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 32
1426792 TTACCACTAT
*
1426802 TTGTATCGATACATG-GCACATTGTATTGATACA
1 TTGTATCGATACATGAG-A-ATTGTATCGATACA
1426835 TTGTATCGATACATGATGAATTGTATCGATACA
1 TTGTATCGATACATGA-GAATTGTATCGATACA
1426868 TTG
1 TTG
1426871 CTTCTAACGA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
33 31 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (32 bp):
TTGTATCGATACATGAGAATTGTATCGATACA
Found at i:1429242 original size:14 final size:14
Alignment explanation
Indices: 1429223--1429255 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
1429213 GCCTTTGAGA
1429223 AAGAAACAAAATTT
1 AAGAAACAAAATTT
1429237 AAGAAACAAAATTT
1 AAGAAACAAAATTT
1429251 AAGAA
1 AAGAA
1429256 TTTCTTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.67, C:0.06, G:0.09, T:0.18
Consensus pattern (14 bp):
AAGAAACAAAATTT
Found at i:1432985 original size:13 final size:13
Alignment explanation
Indices: 1432967--1432992 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1432957 CAATATTCTT
1432967 TGTATCGATACAA
1 TGTATCGATACAA
1432980 TGTATCGATACAA
1 TGTATCGATACAA
1432993 GGGTTACTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1433464 original size:22 final size:20
Alignment explanation
Indices: 1433420--1433464 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
1433410 GCAGCCACCT
* *
1433420 CCAGGTCGCGATCGGCACTC
1 CCAGGTCGCAACCGGCACTC
1433440 CCAGGTCGCAACCGGGCAACTC
1 CCAGGTCGCAACC-GGC-ACTC
1433462 CCA
1 CCA
1433465 CACCCACTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 11 0.52
21 3 0.14
22 7 0.33
ACGTcount: A:0.20, C:0.42, G:0.27, T:0.11
Consensus pattern (20 bp):
CCAGGTCGCAACCGGCACTC
Found at i:1436781 original size:52 final size:52
Alignment explanation
Indices: 1436703--1436828 Score: 207
Period size: 52 Copynumber: 2.4 Consensus size: 52
1436693 CGAAATATGA
* * *
1436703 AAATTTGCCTGCATGTATCGATACATTTCGTAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAATGTATCGATACATCTAGGC
* *
1436755 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTAGGT
1 AAATTTGCCTGCATGTATCGATACATTTCATAATGTATCGATACATCTAGGC
1436807 AAATTTGCCTGCATGTATCGAT
1 AAATTTGCCTGCATGTATCGAT
1436829 GCAAAGATCA
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAATGTATCGATACATCTAGGC
Found at i:1436844 original size:52 final size:51
Alignment explanation
Indices: 1436703--1436851 Score: 167
Period size: 52 Copynumber: 2.9 Consensus size: 51
1436693 CGAAATATGA
* * *
1436703 AAATTTGCCTGCATGTATCGAT-ACATTTCGTAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATCAAATATC--AGTGTATCGATACATCTAGGC
** * *
1436755 AAATTTGCCTGCATGTATCGATACATTTTAT-AATGTATCGATACATCTAGGT
1 AAATTTGCCTGCATGTATCGAT-CA-AATATCAGTGTATCGATACATCTAGGC
*
1436807 AAATTTGCCTGCATGTATCGATGCAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGAT-CAAATATCAGTGTATCGATACA
1436852 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
51 2 0.02
52 77 0.94
54 1 0.01
55 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATCAAATATCAGTGTATCGATACATCTAGGC
Found at i:1436858 original size:13 final size:13
Alignment explanation
Indices: 1436840--1436864 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1436830 CAAAGATCAG
1436840 TGTATCGATACAA
1 TGTATCGATACAA
1436853 TGTATCGATACA
1 TGTATCGATACA
1436865 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1436944 original size:13 final size:13
Alignment explanation
Indices: 1436926--1436950 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1436916 ACAAAACTTA
1436926 TGTATCGATACAT
1 TGTATCGATACAT
1436939 TGTATCGATACA
1 TGTATCGATACA
1436951 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1436946 original size:32 final size:33
Alignment explanation
Indices: 1436905--1436970 Score: 116
Period size: 32 Copynumber: 2.0 Consensus size: 33
1436895 AGTAGCTTAT
1436905 ATTGTATCGATACAAAAC-TTATGTATCGATAC
1 ATTGTATCGATACAAAACTTTATGTATCGATAC
*
1436937 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAACTTTATGTATCGATAC
1436970 A
1 A
1436971 AATCGTTGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 17 0.53
33 15 0.47
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (33 bp):
ATTGTATCGATACAAAACTTTATGTATCGATAC
Found at i:1437970 original size:43 final size:43
Alignment explanation
Indices: 1437909--1438460 Score: 600
Period size: 43 Copynumber: 12.1 Consensus size: 43
1437899 TAAAGGTGAC
* *
1437909 AAAGGTGCCAATATGCTGATTCAAGGCCATCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
1437952 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
** * *
1437995 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
1438038 AAAGATGATGGTGCCAATATGCTGATGCAAGGCCAGCGATATTGGACTT
1 --A-A--A-GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
1438087 AAAGGTGCCAATGTGCTGATTTAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
1438130 AAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 --A-A--A-GGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
** *
1438179 AAAGGTGCCAATGCGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1438222 AAAGAAGAAAGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 --A-AAG---GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
1438271 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
1438314 AAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTT
1 -----A-AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
1438363 AAAGGTGCTAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
1438406 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1438455 AGAAGG
1 A-AAGG
1438461 GTTGCCACCG
Statistics
Matches: 435, Mismatches: 44, Indels: 59
0.81 0.08 0.11
Matches are distributed among these distances:
43 225 0.52
44 8 0.02
45 3 0.01
46 9 0.02
47 4 0.01
48 3 0.01
49 183 0.42
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:1437977 original size:21 final size:21
Alignment explanation
Indices: 1437910--1437977 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
1437900 AAAGGTGACA
1437910 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
*
1437931 AA-G-GCCATCGATAT--TGGACTTA
1 AAGGTGCCA---ATATGCT-GA-TTC
1437953 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAATATGCTGATTC
1437974 AAGG
1 AAGG
1437978 CCAGCGATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 18
0.64 0.04 0.32
Matches are distributed among these distances:
19 4 0.11
20 2 0.06
21 14 0.39
22 10 0.28
23 2 0.06
24 4 0.11
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (21 bp):
AAGGTGCCAATATGCTGATTC
Found at i:1438093 original size:92 final size:92
Alignment explanation
Indices: 1437909--1438460 Score: 873
Period size: 92 Copynumber: 6.1 Consensus size: 92
1437899 TAAAGGTGAC
* * * *
1437909 AAAGGTGCCAATATGCTGATTCAAGGCCATCGATATTGGACTT----A--AAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1437968 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
** *
1437995 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
1438060 TGATGCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* *
1438087 AAAGGTGCCAATGTGCTGATTTAAGGCCAGCTACATTGGACTTAAAGATGATGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1438152 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* * *
1438179 AAAGGTGCCAATGCGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAAGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
1438244 TGATTCAAGGCCAGCTATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* *
1438271 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
* *
1438336 TGATTCAAGGCCAACTATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
*
1438363 AAAGGTGCTAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
1438428 TGATTCAAGGCCAGCGATATTGGGCTT
66 TGATTCAAGGCCAGCGATATTGGACTT
1438455 AGAAGG
1 A-AAGG
1438461 GTTGCCACCG
Statistics
Matches: 431, Mismatches: 28, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
86 37 0.09
90 1 0.00
92 389 0.90
93 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCGATATTGGACTT
Found at i:1438187 original size:184 final size:184
Alignment explanation
Indices: 1437745--1438460 Score: 922
Period size: 184 Copynumber: 3.8 Consensus size: 184
1437735 CTTAGGAATG
* * *
1437745 TTAAAGATGAAGTTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGA
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G-----G-
* * * * * * *
1437810 TGCCAATATGTTGATTCAAGGCCAGCGATATTGGACTTCAAGATGACAAATGCGCCAATATGCTG
57 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG---AAGGTGCCAATATGCTG
* *
1437875 ATTCAAGGCCAGCGATATTGGACTTAAAGGTGACAAAGGTGCCAATATGCTGATTCAAGGCCATC
119 ATTCAAGGCCAGCGATATTGGAC-T-----T---AAAGGTGCCAATGTGCTGATTCAAGGCCAGC
* *
1437940 GATATTGGAC
175 TACATTGGAC
**
1437950 TT----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGGTGCCAATGT
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGT
* *
1438009 GCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGGTGCCAATATGCTGATGCAAGGCCAG
66 GCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAG
*
1438074 CGATATTGGACTTAAAGGTGCCAATGTGCTGATTTAAGGCCAGCTACATTGGAC
131 CGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
* *
1438128 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGT
* *
1438193 GCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAAGTGCCAATATGCTGATTCAAGGCCAG
66 GCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAG
* *
1438258 CTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAT
131 CGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
* * * *
1438312 TTAAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGCTAATGT
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGT
1438377 GCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAG
66 GCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAG
*
1438442 CGATATTGGGCTTAGAAGG
131 CGATATTGGACTTA-AAGG
1438461 GTTGCCACCG
Statistics
Matches: 464, Mismatches: 40, Indels: 34
0.86 0.07 0.06
Matches are distributed among these distances:
178 38 0.08
181 1 0.00
182 1 0.00
184 298 0.64
185 4 0.01
186 1 0.00
187 36 0.08
190 40 0.09
191 1 0.00
196 1 0.00
197 1 0.00
199 39 0.08
201 1 0.00
205 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (184 bp):
TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGT
GCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAG
CGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
Found at i:1438534 original size:32 final size:33
Alignment explanation
Indices: 1438455--1438655 Score: 331
Period size: 32 Copynumber: 6.2 Consensus size: 33
1438445 TATTGGGCTT
1438455 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
1438488 AGAATGGTTGCCACCAACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1438521 AG-AGGGTTGCCACCGACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
1438552 GGAAGGGTTGCCACCGACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1438584 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTA-
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1438616 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTA-
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
1438648 AAAAGGGT
1 AGAAGGGT
1438656 GAAAGATGCC
Statistics
Matches: 159, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
31 2 0.01
32 124 0.78
33 33 0.21
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.28
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:1438767 original size:34 final size:34
Alignment explanation
Indices: 1438657--1439071 Score: 370
Period size: 31 Copynumber: 12.6 Consensus size: 34
1438647 AAAAAGGGTG
* *
1438657 AAAGA-TGCCACGAAGTTGTGGACTTAAAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTAGAAGGAA
* * * *
1438690 CAAG-GTGCCACAGAGTTGTGGGCTTTGAA--AA
1 AAAGAGTGCCACGGAGTTGTGGACTTAGAAGGAA
*
1438721 GAAG-GTGCCACGGAGTTGTGGACTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTAGAAGGAA
* *
1438754 AAAGAGTGCCACGGAGTTGTGGGCTTTGAA--AA
1 AAAGAGTGCCACGGAGTTGTGGACTTAGAAGGAA
* *
1438786 GAAG-GTGCCACGGAGTCGTGGACTT-GAAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTAG-AAGGAA
* * *
1438819 CAAG-GTGCCACAGAGTTGTGGACTTTAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGAC-TTAGAA-GGAA
* *
1438854 AAAGAGTGCCACGGAGTTGTGGGCTTTGAA--AA
1 AAAGAGTGCCACGGAGTTGTGGACTTAGAAGGAA
* *
1438886 GAAG-GTGCCACAGAGTTGTGGACTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTAGAAGGAA
* *
1438919 AAAGAGTGCCACGGAGTTGTGGGCTTA-AACG--
1 AAAGAGTGCCACGGAGTTGTGGACTTAGAAGGAA
1438950 ---GA-TGCCACGGAGTTGTGGACTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGACTTAGAAGGAA
* *
1438980 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGAC-TT-AGAAGGAA
* * * *
1439016 AAAGA-TGTCACAGAGTTGTGGGCTTTAAAAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGAC-TT-AGAAGGAA
*
1439051 AAAGA-TGCCACAGAGTTGTGG
1 AAAGAGTGCCACGGAGTTGTGG
1439072 GCTTTAAAGA
Statistics
Matches: 319, Mismatches: 40, Indels: 44
0.79 0.10 0.11
Matches are distributed among these distances:
27 20 0.06
28 5 0.02
30 1 0.00
31 70 0.22
32 10 0.03
33 59 0.18
34 64 0.20
35 61 0.19
36 29 0.09
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.20
Consensus pattern (34 bp):
AAAGAGTGCCACGGAGTTGTGGACTTAGAAGGAA
Found at i:1438785 original size:65 final size:65
Alignment explanation
Indices: 1438658--1439200 Score: 371
Period size: 65 Copynumber: 8.4 Consensus size: 65
1438648 AAAAGGGTGA
* * * *
1438658 AAGA-TGCCACGAAGTTGTGGACTTAAAAGGAACAAGGTGCCACAGAGTTGTGGGCTTTGAAAAG
1 AAGAGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGGTGCCACAGAGTTGTGGACTTTGAAAAG
* *
1438722 AAG-GTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAA
1 AAGAGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAG-GTGCCACAGAGTTGTGGACTTTGAAAA
1438786 G
65 G
* *
1438787 AAG-GTGCCACGGAGTCGTGGACTT-GAAAGGAACAAGGTGCCACAGAGTTGTGGACTTT-AAAA
1 AAGAGTGCCACGGAGTTGTGGACTTAG-AAGGAAAAAGGTGCCACAGAGTTGTGGACTTTGAAAA
1438849 GGG
65 --G
* * * *
1438852 AAAAAGAGTGCCACGGAGTTGTGGGCTTTGAA--AAGAAGGTGCCACAGAGTTGTGGACTTAGAA
1 ---AAGAGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGGTGCCACAGAGTTGTGGACTTTGAA
*
1438915 GGAAA
63 --AAG
* * *
1438920 AAGAGTGCCACGGAGTTGTGGGCTTA-AACGG----A--TGCCACGGAGTTGTGGACTTAGAAGG
1 AAGAGTGCCACGGAGTTGTGGACTTAGAA-GGAAAAAGGTGCCACAGAGTTGTGGACTTTGAA--
*
1438978 AAA
63 AAG
* * * * * *
1438981 AAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAAGATGTCACAGAGTTGTGGGCTTTAAAA
1 AAGAGTGCCACGGAGTTGTGGAC-TT-AGAAGGAAAAAGGTGCCACAGAGTTGTGGACTTTGAAA
1439046 AGG
64 A-G
* * * * *
1439049 AAAAAGATGCCACAGAGTTGTGGGCTTTA-AA-G-AAAAGGATGCCATTA-AGTCGTGGACTTTG
1 -AAGAG-TGCCACGGAGTTGTGGAC-TTAGAAGGAAAAAGG-TGCCA-CAGAGTTGTGGACTTTG
*
1439110 AGACA-
61 A-AAAG
* * * * *
1439115 AA-A-TGCCACTGAGTCGTGGACTTTGAA-G-AAAAGGATGCCACTGAGTCGTGGACTTT-AAGA
1 AAGAGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGG-TGCCACAGAGTTGTGGACTTTGAA-A
1439175 AG
64 AG
* * *
1439177 -AGATTGCCACTGAGTCGTGGACTT
1 AAGAGTGCCACGGAGTTGTGGACTT
1439201 TAAAAAGGTA
Statistics
Matches: 405, Mismatches: 37, Indels: 75
0.78 0.07 0.15
Matches are distributed among these distances:
60 1 0.00
61 56 0.14
62 46 0.11
63 28 0.07
64 58 0.14
65 87 0.21
66 5 0.01
67 46 0.11
68 10 0.02
69 45 0.11
70 23 0.06
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.21
Consensus pattern (65 bp):
AAGAGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGGTGCCACAGAGTTGTGGACTTTGAAAAG
Found at i:1438865 original size:165 final size:160
Alignment explanation
Indices: 1438657--1439071 Score: 563
Period size: 165 Copynumber: 2.5 Consensus size: 160
1438647 AAAAAGGGTG
*
1438657 AAAGA-TGCCACGAAGTTGTGGAC-TTAAAAGGAACAAG-GTGCCACAGAGTTGTGGGCTTTGAA
1 AAAGAGTGCCACG-AGTTGTGGACTTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAA
*
1438719 AAGAAGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAA
65 AAGAAGGTGCCACAGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TT-AA
*
1438784 AAGAAGGTGCCACGGAGTCGTGGACTT-GAAAGGAA
128 AAG--GATGCCACGGAGTCGTGGACTTAG-AAGGAA
* *
1438819 CAAG-GTGCCACAGAGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGA
1 AAAGAGTGCCAC-GAGTTGTGGACTTTAAAA-GGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGA
1438883 AAAGAAGGTGCCACAGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAA
64 AAAGAAGGTGCCACAGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAA
* *
1438948 CGGATGCCACGGAGTTGTGGACTTAGAAGGAA
129 AGGATGCCACGGAGTCGTGGACTTAGAAGGAA
* * *
1438980 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAAGA-TGTCACAGAGTTGTGGGCTTTAA
1 AAAGAGTGCCAC-GAGTTGTGGACTTT-AAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGA
*
1439044 AAAGGAAAAAGATGCCACAGAGTTGTGG
64 AAA-G---AAGGTGCCACAGAGTTGTGG
1439072 GCTTTAAAGA
Statistics
Matches: 227, Mismatches: 14, Indels: 21
0.87 0.05 0.08
Matches are distributed among these distances:
161 52 0.23
162 50 0.22
163 15 0.07
164 9 0.04
165 101 0.44
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.20
Consensus pattern (160 bp):
AAAGAGTGCCACGAGTTGTGGACTTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGAAA
AGAAGGTGCCACAGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAG
GATGCCACGGAGTCGTGGACTTAGAAGGAA
Found at i:1439038 original size:35 final size:35
Alignment explanation
Indices: 1438950--1439079 Score: 192
Period size: 35 Copynumber: 3.7 Consensus size: 35
1438940 GGCTTAAACG
* * *
1438950 GATGCCACGGAGTTGTGGAC-TT-AGAAGGAAAAA
1 GATGCCACAGAGTTGTGGGCTTTAAAAAGGAAAAA
*
1438983 GAGTGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAA
1 GA-TGCCACAGAGTTGTGGGCTTTAAAAAGGAAAAA
*
1439019 GATGTCACAGAGTTGTGGGCTTTAAAAAGGAAAAA
1 GATGCCACAGAGTTGTGGGCTTTAAAAAGGAAAAA
1439054 GATGCCACAGAGTTGTGGGCTTTAAA
1 GATGCCACAGAGTTGTGGGCTTTAAA
1439080 GAAAAGGATG
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
33 2 0.02
34 17 0.19
35 58 0.65
36 12 0.13
ACGTcount: A:0.35, C:0.12, G:0.32, T:0.22
Consensus pattern (35 bp):
GATGCCACAGAGTTGTGGGCTTTAAAAAGGAAAAA
Found at i:1439130 original size:30 final size:29
Alignment explanation
Indices: 1439050--1439201 Score: 142
Period size: 32 Copynumber: 4.9 Consensus size: 29
1439040 TTAAAAAGGA
* * * *
1439050 AAAAGATGCCACAGAGTTGTGGGCTTTAAAG
1 AAAA-ATGCCACTGAGTCGTGGACTTT-GAG
* *
1439081 AAAAGGATGCCATTAAGTCGTGGACTTTGAG
1 AAAA--ATGCCACTGAGTCGTGGACTTTGAG
1439112 ACAAAATGCCACTGAGTCGTGGACTTTGAAG
1 A-AAAATGCCACTGAGTCGTGGACTTTG-AG
*
1439143 AAAAGGATGCCACTGAGTCGTGGACTTTAAG
1 AAAA--ATGCCACTGAGTCGTGGACTTTGAG
*
1439174 AAGAGATTGCCACTGAGTCGTGGACTTT
1 AA-A-AATGCCACTGAGTCGTGGACTTT
1439202 AAAAAGGTAT
Statistics
Matches: 104, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
30 24 0.23
31 35 0.34
32 44 0.42
33 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (29 bp):
AAAAATGCCACTGAGTCGTGGACTTTGAG
Found at i:1439185 original size:31 final size:31
Alignment explanation
Indices: 1438660--1439203 Score: 193
Period size: 31 Copynumber: 16.8 Consensus size: 31
1438650 AAGGGTGAAA
* *
1438660 GATGCCAC-GAAGTTGTGGACTTAAAAGGAACAAG
1 GATGCCACTG-AGTCGTGGACTT-TAA-GAA-AAG
* * *
1438694 G-TGCCACAGAGTTGTGGGCTTTGAA-AAGAAG
1 GATGCCACTGAGTCGTGGACTTT-AAGAA-AAG
* * * *
1438725 G-TGCCACGGAGTTGTGGACTTAGAAGGAAAAA
1 GATGCCACTGAGTCGTGGACTT-TAA-GAAAAG
* * *
1438757 GAGTGCCACGGAGTTGTGGGCTTTGAA-AAGAAG
1 GA-TGCCACTGAGTCGTGGACTTT-AAGAA-AAG
* *
1438790 G-TGCCACGGAGTCGTGGACTTGAAAGGAACAAG
1 GATGCCACTGAGTCGTGGACTT-TAA-GAA-AAG
* * *
1438823 G-TGCCACAGAGTTGTGGACTTTAAAAGGGAAAAA
1 GATGCCACTGAGTCGTGGACTTT--AA--GAAAAG
* * *
1438857 GAGTGCCACGGAGTTGTGGGCTTTGAA-AAGAAG
1 GA-TGCCACTGAGTCGTGGACTTT-AAGAA-AAG
* * * *
1438890 G-TGCCACAGAGTTGTGGACTTAGAAGGAAAAA
1 GATGCCACTGAGTCGTGGACTT-TAA-GAAAAG
* * * *
1438922 GAGTGCCACGGAGTTGTGGGC-TT---AAACG
1 GA-TGCCACTGAGTCGTGGACTTTAAGAAAAG
* * * *
1438950 GATGCCACGGAGTTGTGGACTTAGAAGGAAAAA
1 GATGCCACTGAGTCGTGGACTT-TAA-GAAAAG
* * * *
1438983 GAGTGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAA
1 GA-TGCCACTGAGTCGTGGACTTT---AA-GAAAAG
* * * * *
1439019 GATGTCACAGAGTTGTGGGCTTTAAAAAGGAAAAA
1 GATGCCACTGAGTCGTGGACTTT---AA-GAAAAG
* * *
1439054 GATGCCACAGAGTTGTGGGCTTTAAAGAAAAG
1 GATGCCACTGAGTCGTGGACTTT-AAGAAAAG
* * *
1439086 GATGCCATTAAGTCGTGGACTTTGAGACAAA-
1 GATGCCACTGAGTCGTGGACTTTAAGA-AAAG
1439117 -ATGCCACTGAGTCGTGGACTTTGAAGAAAAG
1 GATGCCACTGAGTCGTGGACTTT-AAGAAAAG
*
1439148 GATGCCACTGAGTCGTGGACTTTAAGAAGA-
1 GATGCCACTGAGTCGTGGACTTTAAGAAAAG
1439178 GATTGCCACTGAGTCGTGGACTTTAA
1 GA-TGCCACTGAGTCGTGGACTTTAA
1439204 AAAGGTATTT
Statistics
Matches: 421, Mismatches: 51, Indels: 79
0.76 0.09 0.14
Matches are distributed among these distances:
27 17 0.04
28 6 0.01
30 25 0.06
31 101 0.24
32 58 0.14
33 62 0.15
34 63 0.15
35 59 0.14
36 30 0.07
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.21
Consensus pattern (31 bp):
GATGCCACTGAGTCGTGGACTTTAAGAAAAG
Found at i:1443744 original size:19 final size:20
Alignment explanation
Indices: 1443720--1443768 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
1443710 ATACAATGTG
**
1443720 TCGATACATGTTC-ATTGTA
1 TCGATACATGGACAATTGTA
1443739 TCGATACATGGACAATTGTA
1 TCGATACATGGACAATTGTA
1443759 TCGATACATG
1 TCGATACATG
1443769 AAACTGATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (20 bp):
TCGATACATGGACAATTGTA
Found at i:1443836 original size:13 final size:13
Alignment explanation
Indices: 1443814--1443845 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
1443804 GATACATGGC
*
1443814 ACATTATATCGAT
1 ACATTGTATCGAT
1443827 ACATTGTATCGAT
1 ACATTGTATCGAT
1443840 ACATTG
1 ACATTG
1443846 CTTCTAACGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (13 bp):
ACATTGTATCGAT
Found at i:1445339 original size:46 final size:46
Alignment explanation
Indices: 1445283--1445377 Score: 172
Period size: 46 Copynumber: 2.1 Consensus size: 46
1445273 AACAAAAAAC
1445283 AATTTTTTCAAGAAAATTAAGTAAAAAAAACTAATTCAACTTGATT
1 AATTTTTTCAAGAAAATTAAGTAAAAAAAACTAATTCAACTTGATT
* *
1445329 AATTTTTTCAAGAAAATTAAGTAAAAGAAACTGATTCAACTTGATT
1 AATTTTTTCAAGAAAATTAAGTAAAAAAAACTAATTCAACTTGATT
1445375 AAT
1 AAT
1445378 ATGGACACCT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.35
Consensus pattern (46 bp):
AATTTTTTCAAGAAAATTAAGTAAAAAAAACTAATTCAACTTGATT
Found at i:1445785 original size:22 final size:22
Alignment explanation
Indices: 1445760--1445816 Score: 114
Period size: 22 Copynumber: 2.6 Consensus size: 22
1445750 GCCAAGGAAA
1445760 TGTATCGATACATGCTTAAAAT
1 TGTATCGATACATGCTTAAAAT
1445782 TGTATCGATACATGCTTAAAAT
1 TGTATCGATACATGCTTAAAAT
1445804 TGTATCGATACAT
1 TGTATCGATACAT
1445817 TTCTCATTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (22 bp):
TGTATCGATACATGCTTAAAAT
Found at i:1446774 original size:19 final size:20
Alignment explanation
Indices: 1446735--1446772 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1446725 GCCCTTAATT
**
1446735 ATGCATTTTTATTATGTTTC
1 ATGCATTTTTAGCATGTTTC
1446755 ATGCATTTTTAGCATGTT
1 ATGCATTTTTAGCATGTT
1446773 CAACATCTCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.11, G:0.13, T:0.55
Consensus pattern (20 bp):
ATGCATTTTTAGCATGTTTC
Found at i:1453500 original size:13 final size:13
Alignment explanation
Indices: 1453482--1453506 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1453472 AAAAACTAAT
1453482 TTTATTTAAATTA
1 TTTATTTAAATTA
1453495 TTTATTTAAATT
1 TTTATTTAAATT
1453507 TAAAAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTATTTAAATTA
Found at i:1455113 original size:10 final size:10
Alignment explanation
Indices: 1455098--1455125 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
1455088 GGAGGATCGA
1455098 AGATATGTGG
1 AGATATGTGG
1455108 AGATATGTGG
1 AGATATGTGG
1455118 AGATATGT
1 AGATATGT
1455126 AGTAGGCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (10 bp):
AGATATGTGG
Found at i:1467773 original size:10 final size:10
Alignment explanation
Indices: 1467760--1467798 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
1467750 AAAAACCAAG
1467760 AAAAAAAATA
1 AAAAAAAATA
1467770 AAAAAAAATA
1 AAAAAAAATA
*
1467780 AAAAACAAACA
1 AAAAA-AAATA
1467791 AACAAAAA
1 AA-AAAAA
1467799 GGGGTCCAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 15 0.58
11 8 0.31
12 3 0.12
ACGTcount: A:0.87, C:0.08, G:0.00, T:0.05
Consensus pattern (10 bp):
AAAAAAAATA
Done.