Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1943
Parameters: 2 7 7 80 10 50 1000
Length:  76323

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2830--2969
52
2.7
52
88
2
192
44
13
12
30
1.80
3563--3669
47
2.2
48
85
1
144
35
14
12
37
1.84
3808--3857
22
2.3
21
80
12
57
20
32
0
48
1.50
6166--6224
21
2.8
21
78
0
73
38
11
13
35
1.82
6294--6346
19
2.8
19
94
5
90
47
9
7
35
1.64
9758--10077
144
2.1
153
80
8
343
40
14
10
35
1.80
11423--11497
20
3.8
20
78
0
87
34
13
12
40
1.81
11423--11500
40
2.0
39
87
2
111
34
12
12
39
1.82
23435--23476
21
2.0
21
95
0
75
88
9
2
0
0.61
23435--23478
16
2.8
16
89
6
63
88
9
2
0
0.59
23436--23470
1
35.0
1
88
0
52
94
5
0
0
0.32
24701--25613
32
29.2
32
92
3
1309
30
34
17
17
1.93
26142--26216
20
3.8
20
78
0
87
34
13
12
40
1.81
26142--26219
40
2.0
39
87
2
111
34
12
12
39
1.82
35862--36002
1
141.0
1
77
0
129
87
10
0
1
0.59
35862--36002
21
6.4
21
80
8
156
87
10
0
1
0.59
35860--36002
48
3.0
46
84
10
180
87
11
0
1
0.61
37434--37492
27
2.1
28
84
3
75
32
32
15
20
1.93
37592--37728
32
4.4
31
86
5
186
28
36
18
16
1.93
37590--37728
64
2.2
63
88
6
210
28
36
18
16
1.93
37721--38231
49
10.7
49
79
11
503
25
26
17
31
1.97
37826--38182
43
7.9
43
78
10
381
26
26
17
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37781--38231
92
4.9
92
92
0
740
25
25
17
31
1.97
38141--38294
52
2.9
53
81
4
193
25
23
14
36
1.93
38827--38856
8
3.9
8
95
4
53
23
0
10
66
1.21
39045--39069
13
1.9
13
100
0
50
36
16
16
32
1.90
39025--39091
33
2.0
33
88
0
98
32
11
14
40
1.83
39132--39156
13
1.9
13
100
0
50
32
16
16
36
1.90
43423--43816
196
2.0
196
99
0
779
32
14
19
33
1.92
51491--51515
12
2.1
12
100
0
50
48
8
0
44
1.32
52570--53131
281
2.0
281
94
0
991
41
17
14
26
1.88
59577--60171
156
3.8
155
79
6
571
39
19
16
24
1.91
59579--60149
313
1.8
311
83
2
768
39
18
16
24
1.91
60102--60357
140
1.8
139
84
4
354
42
22
14
20
1.87
60996--61243
129
1.9
130
81
4
304
41
10
11
37
1.75
62884--63447
166
3.5
164
78
12
619
51
7
11
29
1.66
64559--64603
22
2.0
22
82
8
54
60
0
0
40
0.97
64840--64870
16
1.9
16
93
0
53
58
3
0
38
1.15
64989--65022
10
3.4
10
91
0
59
50
2
0
47
1.16
64983--65032
20
2.5
19
75
9
55
46
4
0
50
1.20
64989--65068
29
2.7
29
77
9
72
50
1
0
48
1.08
68575--68710
70
1.9
70
93
1
236
19
13
7
59
1.58
73048--73078
2
15.5
2
100
0
62
48
0
0
51
1.00
73289--73323
2
17.5
2
93
0
61
45
0
2
51
1.16

Tables:   1

The End!