genome.fa.s1945.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1945
Parameters: 2 7 7 80 10 50 1000
Length:  56980

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3504--3599	11	9.1	10	75	14	59	82	9	7	1	0.90
3496--3597	37	2.9	36	82	10	104	82	10	5	0	0.88
3520--3599	23	3.5	22	77	17	65	82	11	5	1	0.88
3529--3597	14	5.4	13	78	18	74	84	13	1	1	0.77
3529--3597	27	2.6	25	84	11	84	84	13	1	1	0.77
4903--5146	32	7.6	32	83	5	307	24	29	13	32	1.94
4893--5146	63	4.0	64	82	8	279	23	29	13	34	1.93
4903--5146	95	2.5	96	92	1	391	24	29	13	32	1.94
5130--5627	27	16.6	27	73	17	314	20	34	14	31	1.92
5148--5580	33	14.0	32	73	13	259	20	33	13	32	1.91
5130--5607	60	7.9	59	79	11	459	20	34	13	31	1.92
5130--5629	152	3.3	148	81	11	552	20	34	14	31	1.92
5456--5580	34	3.9	34	73	14	129	21	32	12	33	1.90
5392--5607	61	3.6	61	91	1	319	20	33	12	32	1.91
5490--5667	88	2.0	87	86	3	250	23	30	12	32	1.92
5641--5736	30	3.3	30	77	10	101	35	29	17	17	1.93
5758--6094	39	7.9	39	72	17	235	25	25	20	28	1.99
5797--6396	48	12.8	48	77	12	473	25	25	18	30	1.98
5758--6145	87	4.4	87	89	1	544	25	24	20	29	1.99
6067--6396	49	6.6	49	85	4	374	25	26	17	30	1.97
5971--6396	198	2.2	188	81	6	469	26	25	17	30	1.97
7277--7321	20	2.2	20	100	0	90	26	15	17	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15890--15943	20	2.7	20	85	5	74	38	16	11	33	1.84
15972--16045	20	3.8	20	94	1	123	35	16	20	28	1.94
16034--16058	13	1.9	13	100	0	50	40	20	16	24	1.91
16015--16076	32	1.9	32	87	9	90	40	17	16	25	1.90
25068--25100	5	6.8	5	86	6	50	84	0	15	0	0.61
25127--25188	23	2.7	23	83	13	76	35	0	0	64	0.94
25125--25192	25	2.8	24	81	16	79	35	0	0	64	0.94
26676--26718	15	2.7	16	79	13	52	44	2	0	53	1.13
26676--26718	17	2.6	17	82	10	54	44	2	0	53	1.13
28425--28450	13	2.0	13	100	0	52	38	15	15	30	1.88
28909--28975	37	1.9	35	88	11	102	32	11	25	29	1.92
29408--29544	58	2.4	58	82	3	152	49	10	12	27	1.73
33312--33353	22	1.9	22	100	0	84	19	23	23	33	1.97
37411--37559	52	2.9	51	88	4	226	30	17	19	32	1.95
37613--37679	33	2.0	33	88	0	98	40	14	11	32	1.83
37635--37659	13	1.9	13	100	0	50	32	16	16	36	1.90
46392--47105	309	2.3	308	80	7	734	24	15	19	40	1.90
46648--47366	310	2.3	308	79	4	743	23	15	20	40	1.90
46392--47357	153	6.3	153	74	8	701	24	15	19	40	1.91
48825--48901	20	3.8	20	82	0	91	38	9	10	41	1.71
49768--49838	32	2.2	32	92	0	115	32	9	18	39	1.83
49745--49830	19	4.7	19	71	19	67	34	10	17	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49883--49908	13	2.0	13	100	0	52	30	15	15	38	1.88

Tables:   1

The End!