Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1948

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7776
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.36


Found at i:3408 original size:15 final size:14

Alignment explanation


    Indices: 3386--3423  Score: 60
    Period size: 13  Copynumber: 2.8  Consensus size: 14

       3376 GTAAAACAAG

                          
       3386 CTTTTTTTTTTTCT
          1 CTTTTTTTTTTTCT

               *          
       3400 -TTCTTTTTTTTCT
          1 CTTTTTTTTTTTCT

                       
       3413 CTTTTTTTTTT
          1 CTTTTTTTTTT

       3424 GGCTATTGGA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  13   12  0.57
  14    9  0.43

ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87


Consensus pattern (14 bp):   
CTTTTTTTTTTTCT
Done.