Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1949
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82743
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Found at i:519 original size:20 final size:19
Alignment explanation
Indices: 486--555 Score: 59
Period size: 20 Copynumber: 3.6 Consensus size: 19
476 TGCTAGTTTC
* * *
486 ATGTATTGAAACAATTATG
1 ATGTATCGATACAATCATG
* **
505 TATGTATCGATACAATGAAC
1 -ATGTATCGATACAATCATG
*
525 ATGTATCGATACGAAGCATG
1 ATGTATCGATAC-AATCATG
545 ATGTATCGATA
1 ATGTATCGATA
556 TATCTGGATA
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
19 12 0.30
20 28 0.70
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (19 bp):
ATGTATCGATACAATCATG
Found at i:3194 original size:20 final size:20
Alignment explanation
Indices: 3171--3244 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
3161 ACAATTCAAA
3171 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
3191 GTATCGATACATGAAAAAAAAT
1 GTATCGATACATG--TTGCAAT
3213 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
3233 GTATCGATACAT
1 GTATCGATACAT
3245 AAAAAGGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 28 0.64
22 16 0.36
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:3261 original size:41 final size:42
Alignment explanation
Indices: 3171--3265 Score: 165
Period size: 42 Copynumber: 2.3 Consensus size: 42
3161 ACAATTCAAA
3171 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAAAAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAAAAT
**
3213 GTATCGATACATGTTGCAATGTATCGATACAT-AAAAAGGAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAAAAT
3254 GTATCGATACAT
1 GTATCGATACAT
3266 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 19 0.37
42 32 0.63
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (42 bp):
GTATCGATACATGTTGCAATGTATCGATACATGAAAAAAAAT
Found at i:5563 original size:21 final size:21
Alignment explanation
Indices: 5530--5574 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
5520 TTGCAAGTTG
*
5530 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
5552 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
5572 AAA
1 AAA
5575 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:7398 original size:15 final size:15
Alignment explanation
Indices: 7378--7408 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7368 TAAAAATGTC
*
7378 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
7393 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
7408 C
1 C
7409 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:9504 original size:13 final size:13
Alignment explanation
Indices: 9486--9524 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
9476 ACATTTTTCC
9486 TTGTATCGATACA
1 TTGTATCGATACA
9499 TTGTATCGATACA
1 TTGTATCGATACA
*
9512 CTGTATCGATACA
1 TTGTATCGATACA
9525 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:11420 original size:48 final size:48
Alignment explanation
Indices: 11366--11461 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
11356 GGGGAGATAA
11366 AGGAGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
1 AGGAGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
11414 AGGAGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
1 AGGAGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
11462 CGTAAAATTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.38, C:0.08, G:0.29, T:0.25
Consensus pattern (48 bp):
AGGAGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
Found at i:12037 original size:20 final size:20
Alignment explanation
Indices: 12014--12086 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
12004 ACAATTCAAA
12014 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
12034 GTATCGATACATGAAAAAAAT
1 GTATCGATACATG-TTGCAAT
12055 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
12075 GTATCGATACAT
1 GTATCGATACAT
12087 AAAAAGGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:12057 original size:21 final size:21
Alignment explanation
Indices: 12031--12107 Score: 86
Period size: 21 Copynumber: 3.7 Consensus size: 21
12021 TACATGTTGC
12031 AATGTATCGATACATGAAAAA
1 AATGTATCGATACATGAAAAA
****
12052 AATGTATCGATACATG-TTGC
1 AATGTATCGATACATGAAAAA
12072 AATGTATCGATACAT-AAAAA
1 AATGTATCGATACATGAAAAA
*
12092 GGATGTATCGATACAT
1 -AATGTATCGATACAT
12108 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
AATGTATCGATACATGAAAAA
Found at i:12065 original size:41 final size:41
Alignment explanation
Indices: 12014--12107 Score: 163
Period size: 41 Copynumber: 2.3 Consensus size: 41
12004 ACAATTCAAA
12014 GTATCGATACATGTTGCAATGTATCGATACATGAAAAA-AAT
1 GTATCGATACATGTTGCAATGTATCGATACAT-AAAAAGAAT
*
12055 GTATCGATACATGTTGCAATGTATCGATACATAAAAAGGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAGAAT
12096 GTATCGATACAT
1 GTATCGATACAT
12108 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
40 5 0.10
41 46 0.90
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAGAAT
Found at i:12152 original size:19 final size:19
Alignment explanation
Indices: 12128--12177 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
12118 TAGCCAAACT
12128 TGTATCGATACAGCAAGTA
1 TGTATCGATACAGCAAGTA
12147 TGTATCGATACAGCAAGTA
1 TGTATCGATACAGCAAGTA
12166 TGTATCGATACA
1 TGTATCGATACA
12178 CAAAAAATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (19 bp):
TGTATCGATACAGCAAGTA
Found at i:13198 original size:19 final size:20
Alignment explanation
Indices: 13148--13202 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
13138 CTGCTAATCT
**
13148 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
*
13168 CAGGTATCGATACAATT-AA
1 CATGTATCGATACAATTGAA
*
13187 CATGTATTGATACAAT
1 CATGTATCGATACAAT
13203 GTATCGATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:14314 original size:13 final size:13
Alignment explanation
Indices: 14296--14336 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
14286 AATAGTACCT
14296 AATGTATCGATAC
1 AATGTATCGATAC
**
14309 AATGTATTAATAC
1 AATGTATCGATAC
14322 AATGTATCGATAC
1 AATGTATCGATAC
14335 AA
1 AA
14337 GGAATGTTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:16184 original size:13 final size:13
Alignment explanation
Indices: 16166--16191 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16156 CAATTTTTTG
16166 TGTATCGATACAT
1 TGTATCGATACAT
16179 TGTATCGATACAT
1 TGTATCGATACAT
16192 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:16203 original size:32 final size:33
Alignment explanation
Indices: 16146--16209 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
16136 TACAAGCCCA
**
16146 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
16179 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
16210 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:16882 original size:40 final size:41
Alignment explanation
Indices: 16836--16926 Score: 100
Period size: 39 Copynumber: 2.3 Consensus size: 41
16826 TTTTCTTTCT
*
16836 CCCTTAATTAAAG-TAATTTTA-ACAAATTCGTACATTCTCC
1 CCCTTAATTAAAGATAATTTTAGA-AAATTCATACATTCTCC
* *
16876 CCCTTAA-T-AAGATAATTTTAGAAAATTTATGCATTCTCC
1 CCCTTAATTAAAGATAATTTTAGAAAATTCATACATTCTCC
* *
16915 CCTTTTATTAAA
1 CCCTTAATTAAA
16927 AAATCTCCCC
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
38 3 0.07
39 28 0.67
40 9 0.21
41 2 0.05
ACGTcount: A:0.35, C:0.20, G:0.05, T:0.40
Consensus pattern (41 bp):
CCCTTAATTAAAGATAATTTTAGAAAATTCATACATTCTCC
Found at i:18286 original size:21 final size:20
Alignment explanation
Indices: 18257--18299 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
18247 GGCTAGTATG
*
18257 GGGACTGCCCGGTTGCGACCT
1 GGGACTG-CCGGTCGCGACCT
*
18278 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
18298 GG
1 GG
18300 TGGTGCTGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.09, C:0.30, G:0.44, T:0.16
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:18758 original size:13 final size:13
Alignment explanation
Indices: 18740--18777 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
18730 ATAATCCCCC
18740 TGTATCGATACAG
1 TGTATCGATACAG
*
18753 TGTATCGATACAT
1 TGTATCGATACAG
18766 TGTATCGATACA
1 TGTATCGATACA
18778 AAGAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:23195 original size:52 final size:52
Alignment explanation
Indices: 23117--23233 Score: 198
Period size: 52 Copynumber: 2.2 Consensus size: 52
23107 CGAAATCTGC
* *
23117 ATGTATCGATACATTTAATAGTGTATCGATACATTTGGGCAAATTTGCCTGA
1 ATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTGA
* *
23169 ATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCCTGC
1 ATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTGA
23221 ATGTATCGATACA
1 ATGTATCGATACA
23234 AAGATCAGTG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 61 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (52 bp):
ATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTGA
Found at i:23246 original size:52 final size:51
Alignment explanation
Indices: 23113--23253 Score: 194
Period size: 52 Copynumber: 2.7 Consensus size: 51
23103 GTCCCGAAAT
*
23113 CTGCATGTATCGATACATTTAATAGTGTATCGATACATTTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* * *
23165 CTGAATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
23217 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
23254 ATGTATCGAT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
51 2 0.03
52 77 0.97
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:23260 original size:13 final size:13
Alignment explanation
Indices: 23242--23266 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23232 CAAAGATCAG
23242 TGTATCGATACAA
1 TGTATCGATACAA
23255 TGTATCGATACA
1 TGTATCGATACA
23267 TTTGAGTAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:23344 original size:33 final size:33
Alignment explanation
Indices: 23307--23373 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
23297 AGTAGCTTAA
23307 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
23340 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
23373 A
1 A
23374 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:23347 original size:13 final size:13
Alignment explanation
Indices: 23329--23353 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23319 CAAAAAAATA
23329 TGTATCGATACAT
1 TGTATCGATACAT
23342 TGTATCGATACA
1 TGTATCGATACA
23354 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:24286 original size:67 final size:68
Alignment explanation
Indices: 24164--24290 Score: 177
Period size: 67 Copynumber: 1.9 Consensus size: 68
24154 ATTGGGTTTT
* * *
24164 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGATGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATG
24229 AGA
66 AGA
* * *
24232 AAAG-TGATAAAGATGCCAATATGTTGATTCACGGCCAACGATATTAGG-CTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATT-GGACTTAAAGATGA
24291 GAAAAAGGAT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
67 46 0.88
68 6 0.12
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATG
AGA
Found at i:24340 original size:55 final size:52
Alignment explanation
Indices: 24240--24661 Score: 313
Period size: 43 Copynumber: 8.7 Consensus size: 52
24230 GAAAAGTGAT
* * * * * * *
24240 AAAGATGCCAATATGTTGATTCACGGCCAACGATATT-AGGCTTAAAGATGAGAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGA-ACTTAAAGATG-G-A
* *
24294 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
24347 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * *
24390 AAAGGTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA--AA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * *
24440 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
24483 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * *
24533 -AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
24575 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
*
24625 -AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTG
24662 GGCTTAGAAG
Statistics
Matches: 309, Mismatches: 33, Indels: 57
0.77 0.08 0.14
Matches are distributed among these distances:
43 113 0.37
44 3 0.01
46 1 0.00
48 1 0.00
49 74 0.24
50 37 0.12
51 1 0.00
52 32 0.10
53 6 0.02
54 5 0.02
55 35 0.11
56 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.25
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
Found at i:24408 original size:43 final size:43
Alignment explanation
Indices: 24347--24672 Score: 382
Period size: 43 Copynumber: 7.1 Consensus size: 43
24337 TAAAGATGGA
24347 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
24390 AAAGGTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
24433 AAAGAAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 -------AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
24483 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
24526 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 -AA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
24575 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
24618 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
24667 AGAAGG
1 A-AAGG
24673 GTTGCCACCG
Statistics
Matches: 245, Mismatches: 19, Indels: 37
0.81 0.06 0.12
Matches are distributed among these distances:
43 115 0.47
44 8 0.03
45 2 0.01
46 2 0.01
47 2 0.01
48 3 0.01
49 74 0.30
50 39 0.16
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:24582 original size:92 final size:92
Alignment explanation
Indices: 24294--24672 Score: 623
Period size: 92 Copynumber: 4.1 Consensus size: 92
24284 AAGATGAGAA
* *
24294 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAAT
*
24359 ATGCTGATTCAAGGCCAGCTATATTGGACTT
62 ATGCTGATTCAAGGCCAGCGATATTGGACTT
* **
24390 AAAGGTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAAAAAGGTGCCAATATG
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG-ATGAAGGTGCCAATATG
24455 CTGATTCAAGGCCAGCGATATTGGACTT
65 CTGATTCAAGGCCAGCGATATTGGACTT
*
24483 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
24548 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
24575 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
* *
24640 TGATTCAAGGCCAGCTATATTGGGCTT
66 TGATTCAAGGCCAGCGATATTGGACTT
24667 AGAAGG
1 A-AAGG
24673 GTTGCCACCG
Statistics
Matches: 270, Mismatches: 11, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
92 132 0.49
93 91 0.34
95 41 0.15
96 6 0.02
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCGATATTGGACTT
Found at i:24725 original size:36 final size:34
Alignment explanation
Indices: 24688--24966 Score: 303
Period size: 37 Copynumber: 8.3 Consensus size: 34
24678 CACCGACTTG
* *
24688 TGTGGGCTTTAGAAGGAGAAAGGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
*
24722 TGTGGGC-TTAAAA-G-----GGTTCCACGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
24749 TGTGGGCTTTGAAAA-G---AAGGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGAAAAAGGTGCCACGGAGT
* *
24780 CGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAA-GGAAAAAG-GTGCCACGGAGT
24816 TGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAAG-GAAAAAG-GTGCCACGGAGT
* *
24853 TGTGGGCTTTAAAAAGAAAAA-GTGCCATGGAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
* *
24886 GGTAGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAA-GGAAAAAG-GTGCCACGGAGT
*
24923 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGAAGT
1 TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
24957 TGTGGGCTTT
1 TGTGGGCTTT
24967 GAAGAAAAGG
Statistics
Matches: 213, Mismatches: 16, Indels: 32
0.82 0.06 0.12
Matches are distributed among these distances:
27 19 0.09
28 2 0.01
29 5 0.02
30 4 0.02
31 20 0.09
32 2 0.01
33 24 0.11
34 32 0.15
35 23 0.11
36 29 0.14
37 53 0.25
ACGTcount: A:0.31, C:0.12, G:0.36, T:0.22
Consensus pattern (34 bp):
TGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGT
Found at i:24744 original size:27 final size:28
Alignment explanation
Indices: 24709--24796 Score: 115
Period size: 31 Copynumber: 3.1 Consensus size: 28
24699 GAAGGAGAAA
24709 GGTGCCACGGAGTTGTGGGC-TTAAAAG
1 GGTGCCACGGAGTTGTGGGCTTTAAAAG
*
24736 GGTTCCACGGAGTTGTGGGCTTTGAAAAG
1 GGTGCCACGGAGTTGTGGGCTTT-AAAAG
* *
24765 AAGGTGCCACGGAGTCGTGGACTTTAAAAG
1 --GGTGCCACGGAGTTGTGGGCTTTAAAAG
24795 GG
1 GG
24797 AAAAAGAGTG
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
27 19 0.36
28 4 0.08
29 5 0.09
30 5 0.09
31 20 0.38
ACGTcount: A:0.24, C:0.15, G:0.39, T:0.23
Consensus pattern (28 bp):
GGTGCCACGGAGTTGTGGGCTTTAAAAG
Found at i:24899 original size:70 final size:70
Alignment explanation
Indices: 24740--24969 Score: 310
Period size: 70 Copynumber: 3.3 Consensus size: 70
24730 TAAAAGGGTT
* *
24740 CCACGGAGTTGTGGGCTTTG-AAA-AG---AAG-GTGCCACGGAGTCGTGGACTTTAAAAGGGAA
1 CCACGGAGTTGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GG-A
24799 AAAGAGTG
64 AAA-AGTG
*
24807 CCACGGAGTTGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAA
1 CCACGGAGTTGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAAA
24872 AAGTG
66 AAGTG
* * * *
24877 CCATGGAGTGGTAGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAAA
1 CCACGGAGTTGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAAA
24942 AAGGTG
66 AA-GTG
*
24948 CCACGAAGTTGTGGGCTTTGAA
1 CCACGGAGTTGTGGGCTTTGAA
24970 GAAAAGGATG
Statistics
Matches: 144, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
67 20 0.14
68 3 0.02
69 2 0.01
70 66 0.46
71 25 0.17
72 4 0.03
73 24 0.17
ACGTcount: A:0.33, C:0.12, G:0.35, T:0.20
Consensus pattern (70 bp):
CCACGGAGTTGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAAA
AAGTG
Found at i:24958 original size:104 final size:103
Alignment explanation
Indices: 24731--24998 Score: 346
Period size: 104 Copynumber: 2.6 Consensus size: 103
24721 TTGTGGGCTT
* * * *
24731 AAAAGGGTTCCACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTTAAAAGG
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAGTGCCACGGAGTCGTGGACTTTAAAAGG
24796 GAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAG
66 GAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAG
* *
24834 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGTGCCATGGAGTGGTAGG-CTTTGA
1 AAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAG--AAAGTGCCACGGAGTCGT-GGACTTT-A
24898 AAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG-G
61 AAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAG
* * * * *
24939 AAAAAGGTGCCACGAAGTTGTGGGCTTTGAAGAA-AAGGATGTCACTGAGTCGTGGACTTT
1 AAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAAAGAAAG-TGCCACGGAGTCGTGGACTTT
24999 GAGACAAAAT
Statistics
Matches: 144, Mismatches: 13, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
102 5 0.03
103 19 0.13
104 47 0.33
105 11 0.08
106 24 0.17
107 38 0.26
ACGTcount: A:0.32, C:0.12, G:0.34, T:0.21
Consensus pattern (103 bp):
AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAGTGCCACGGAGTCGTGGACTTTAAAAGG
GAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAG
Found at i:25033 original size:62 final size:63
Alignment explanation
Indices: 24958--25093 Score: 222
Period size: 62 Copynumber: 2.2 Consensus size: 63
24948 CCACGAAGTT
*
24958 GTGGGCTTTGAAGAAAAGGATGTCACTGAGTCGTGGACTTTGAGACA-A-AATGCCACTGAGTC
1 GTGGGCTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGA-AGAGAATGCCACTGAGTC
* *
25020 GTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCCACTGAGTC
1 GTGGGCTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGAATGCCACTGAGTC
25083 GTGGGCTTTGA
1 GTGGGCTTTGA
25094 GAAGAGATTT
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
61 1 0.01
62 44 0.65
63 23 0.34
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.25
Consensus pattern (63 bp):
GTGGGCTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGAAGAGAATGCCACTGAGTC
Found at i:25102 original size:31 final size:30
Alignment explanation
Indices: 24940--25101 Score: 184
Period size: 31 Copynumber: 5.2 Consensus size: 30
24930 TTTAAAAGGA
* * *
24940 AAAAGGTGCCAC-GAAGTTGTGGGCTTTGAAG
1 AAAAGATGCCACTG-AGTCGTGGACTTTG-AG
*
24971 AAAAGGATGTCACTGAGTCGTGGACTTTGAG
1 AAAA-GATGCCACTGAGTCGTGGACTTTGAG
25002 ACAAA-ATGCCACTGAGTCGTGGACTTTGAAG
1 A-AAAGATGCCACTGAGTCGTGGACTTTG-AG
25033 AAAAGGATGCCACTGAGTCGTGGACTTTGAG
1 AAAA-GATGCCACTGAGTCGTGGACTTTGAG
* *
25064 AAGAGATTGCCACTGAGTCGTGGGCTTTGAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTGAG
*
25095 AAGAGAT
1 AAAAGAT
25102 TTGAAGAATT
Statistics
Matches: 117, Mismatches: 7, Indels: 15
0.84 0.05 0.11
Matches are distributed among these distances:
30 28 0.24
31 44 0.38
32 44 0.38
33 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.32, T:0.23
Consensus pattern (30 bp):
AAAAGATGCCACTGAGTCGTGGACTTTGAG
Found at i:33345 original size:52 final size:52
Alignment explanation
Indices: 33267--33383 Score: 207
Period size: 52 Copynumber: 2.2 Consensus size: 52
33257 CGAAATCTAC
*
33267 ATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCCTGA
1 ATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTGA
* *
33319 ATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCCTGC
1 ATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTGA
33371 ATGTATCGATACA
1 ATGTATCGATACA
33384 AAGATCAGTG
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (52 bp):
ATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTGA
Found at i:33396 original size:52 final size:52
Alignment explanation
Indices: 33267--33403 Score: 188
Period size: 52 Copynumber: 2.6 Consensus size: 52
33257 CGAAATCTAC
*
33267 ATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAAATTTGCCTGA
1 ATGTATCGATACA-TAAGATAGTGTATCGATACATCTGGGCAAATTTGCCTGA
*** * *
33319 ATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCCTGC
1 ATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGCCTGA
33371 ATGTATCGATACA-AAGATCAGTGTATCGATACA
1 ATGTATCGATACATAAGAT-AGTGTATCGATACA
33404 ATGTATCGAT
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
51 4 0.05
52 72 0.95
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (52 bp):
ATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGCCTGA
Found at i:33410 original size:13 final size:13
Alignment explanation
Indices: 33392--33416 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33382 CAAAGATCAG
33392 TGTATCGATACAA
1 TGTATCGATACAA
33405 TGTATCGATACA
1 TGTATCGATACA
33417 TTTGAGTAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:33496 original size:13 final size:13
Alignment explanation
Indices: 33478--33502 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33468 ACAAAAAATA
33478 TGTATCGATACAT
1 TGTATCGATACAT
33491 TGTATCGATACA
1 TGTATCGATACA
33503 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:33498 original size:32 final size:33
Alignment explanation
Indices: 33457--33522 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
33447 AGTAGCTTAA
33457 ATTGTATCGATACAA-AAAATATGTATCGATAC
1 ATTGTATCGATACAACAAAATATGTATCGATAC
***
33489 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAACAAAATATGTATCGATAC
33522 A
1 A
33523 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.50
33 15 0.50
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAACAAAATATGTATCGATAC
Found at i:36851 original size:21 final size:21
Alignment explanation
Indices: 36822--36866 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
36812 AAGTTTTTAT
*
36822 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
36842 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
36864 TTT
1 TTT
36867 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:39091 original size:20 final size:20
Alignment explanation
Indices: 39066--39117 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
39056 TACAAGCCCA
**
39066 TGTATCGATACAATTTTTTG
1 TGTATCGATACAATACTTTG
39086 TGTATCGATAC-ATACTTTG
1 TGTATCGATACAATACTTTG
39105 TGTATCGATACAA
1 TGTATCGATACAA
39118 GTTTGGCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.42
Consensus pattern (20 bp):
TGTATCGATACAATACTTTG
Found at i:44589 original size:20 final size:20
Alignment explanation
Indices: 44563--44623 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 20
44553 ACTACCAATC
*
44563 TCATGTATCGATACAATT-G
1 TCATGTATCGATACAATTAA
*
44582 TCCATGTATCGATATAATTAA
1 T-CATGTATCGATACAATTAA
44603 T-ATGTATCGATACAATGTAA
1 TCATGTATCGATACAAT-TAA
44623 T
1 T
44624 GATACAAAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.42
20 20 0.56
21 1 0.03
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (20 bp):
TCATGTATCGATACAATTAA
Found at i:46333 original size:61 final size:61
Alignment explanation
Indices: 46249--46676 Score: 468
Period size: 61 Copynumber: 7.0 Consensus size: 61
46239 CAGTGGCATA
* * * * * *
46249 CTTTTCATTTTCAAAGCCCACACAAGTTAGTGGTA-CTTTCCAATCCTCAAAAAGCAAGACGC
1 CTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACGC
*
46311 CTTTTCCTTTTAAAGCCTACACAAGTTGGTGGCACCCTTT-AGTCCTCAAAGAGCAGGACGC
1 CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTTCAGTCCTCAAAGAGCAGGACGC
* * * * * *
46372 CTTTTTCTTTTCAAGCCTACACGAGTTGGTGGCACATTTCAGTCCTCAAAGAGCAGGACAC
1 CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGC
* * * * * * * *
46433 TTTTTGCTTCTGAAGCCCACATAAGTTGGTGGCACCTTCCGGTCCTCAAAGAGCAGGATGC
1 CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGC
* * * * * * *
46494 TTTTTTCTTTTCAAAGCCCACACAAGTTGGTGACACCCTTCAGTTCTCAAAAAGTAGGACGC
1 CTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGC
* * *
46556 CTTTTCCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGTAGGATGC
1 CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGC
* *
46617 CTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTCCTT--GACCTCAAAGAGCAGGAC
1 CTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCT--TTCAGTCCTCAAAGAGCAGGAC
46677 ACATTCCATT
Statistics
Matches: 310, Mismatches: 49, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
60 4 0.01
61 201 0.65
62 99 0.32
63 4 0.01
64 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (61 bp):
CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGC
Found at i:46582 original size:123 final size:122
Alignment explanation
Indices: 46250--47090 Score: 810
Period size: 123 Copynumber: 7.0 Consensus size: 122
46240 AGTGGCATAC
* * * * *
46250 TTTTCATTTTCAAAGCCCACACAAGTTAGTGGTA-CTTTCCAATCCTCAAAAAGCAAGACGCCTT
1 TTTTC-TTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACGCCTT
* *
46314 TTCCTTTTAAAGCCTACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCT
64 TTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTCAGTCCTCAAAGAGCAGGACGCCT
* * * * *
46374 TTTTCTTTTC-AAGCCTACACGAGTTGGTGGCACATTTCAGTCCTCAAAGAGCAGGACACTTTTT
1 TTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * * *
46438 GCTTCTGAAGCCCACATAAGTTGGTGGCACCTTCCGGTCCTCAAAGAGCAGGATGCTT
66 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGCAGGACGCCT
* * * * *
46496 TTTTCTTTTCAAAGCCCACACAAGTTGGTGACACCCTTCAGTTCTCAAAAAGTAGGACGCCTTTT
1 TTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTT
* * *
46561 CCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGTAGGATGCCT
66 CCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGACGCCT
* * *
46619 TTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTCCTT--GACCTCAAAGAGCAGGAC-AC-A
1 TTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCT--TTCAGTCCTCAAAGAGCAGGACGCCTT
* ** * * ** *
46680 TTCC-ATT----CCC-TTC---TT--T-TCCCCTTTTGTCCTCAAAGAGCAGGATG-CT
64 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCT
* * * * *
46726 TTTTC-CTTCTAAAGCCCACACAAGTTGGTGGCACCTTTCAATCCTCAAAGAGTAGAACGTCTTT
1 TTTTCTTTTC-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTT
* * * *
46790 TTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTCCAGTCCTCAAAGAGTAGGACGCGT
65 TCCTTTT-AAAGCCCACACAAGTTGGTGGCA-CCTTCAGTCCTCAAAGAGCAGGACGCCT
* * * *
46850 TTTCCTCTT-AAAGCCCACACATGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTT
1 TTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * *
46914 TCTTTTCAAAGCCCACAGAAGTTGGTGGGACCCTTTAGTCCTCAAAGAGGAGGACACCT
66 CCTTTT-AAAGCCCACACAAGTTGGTGGCA-CCTTCAGTCCTCAAAGAGCAGGACGCCT
* * * *
46973 TTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCTAGTCCTCAAAGAGTAGGATGCCTTC
1 TTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGAGCAGGACGCCTTT
* * * *
47037 TCC-TTCAAAGCCCACACAAATTGGTGGCACCTCCTAGTCCTTAAAGAGCAGGAC
65 TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC-AGTCCTCAAAGAGCAGGAC
47091 ACACTTCATT
Statistics
Matches: 585, Mismatches: 102, Indels: 62
0.78 0.14 0.08
Matches are distributed among these distances:
105 2 0.00
106 3 0.01
107 47 0.08
108 21 0.04
109 6 0.01
110 3 0.01
112 2 0.00
115 4 0.01
116 4 0.01
119 2 0.00
120 2 0.00
121 12 0.02
122 133 0.23
123 280 0.48
124 59 0.10
125 5 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (122 bp):
TTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTT
CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCT
Found at i:46585 original size:184 final size:183
Alignment explanation
Indices: 46250--47090 Score: 754
Period size: 184 Copynumber: 4.7 Consensus size: 183
46240 AGTGGCATAC
* * * * * * *
46250 TTTTCATTTTCAAAGCCCACACAAGTTAGTGGTACTTTCCAATCCTCAAAAAGCAAGACGCCTTT
1 TTTTC-TTCTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCCTTT
* * * * *
46315 TCCTTTTAAAGCCTACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCT
65 TCCTTTTAAAGCCCACACAAGTTGGTGACACCCTTCAGTCCTCAAAAAGCAGGACGCCTTTTCCT
* * * *
46380 TTTCAAGCCTACACGAGTTGGTGGCACATTTCAGTCCTCAAAGAGCAGGA-CACT
130 CTTAAAGCCCACACAAGTTGGTGGCACATTTCAGTCCTCAAAGAGCAGGAGC-CT
* * * * *
46434 TTTTGCTTCT-GAAGCCCACATAAGTTGGTGGCACCTTCCGGTCCTCAAAGAGCAGGATGCTTTT
1 TTTT-CTTCTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCCTTT
* * *
46498 TTCTTTTCAAAGCCCACACAAGTTGGTGACACCCTTCAGTTCTCAAAAAGTAGGACGCCTTTTCC
65 TCCTTTT-AAAGCCCACACAAGTTGGTGACACCCTTCAGTCCTCAAAAAGCAGGACGCCTTTTCC
* *
46563 TCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGTAGGATGCCT
129 TCTTAAAGCCCACACAAGTTGGTGGCACATTTCAGTCCTCAAAGAGCAGGA-GCCT
* * * * *
46619 TTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC-TCCTTGACCTCAAAGAGCAGGAC-AC-AT
1 TTTTCTTCTCAAAGCCCACACAAGTTGGTGGCACCTTCC-AGTCCTCAAAGAGCAGGACGCCTTT
* ** * ** * * *
46681 TCC-ATT----CCC-TTC---TT--T-TC-CCCTTTTGTCCTCAAAGAGCAGGATGCTTTTTCCT
65 TCCTTTTAAAGCCCACACAAGTTGGTGACACCCTTCAGTCCTCAAAAAGCAGGACGCCTTTTCCT
* * * * *
46733 -TCTAAAGCCCACACAAGTTGGTGGCACCTTTCAATCCTCAAAGAGTAGAACGTCT
130 CT-TAAAGCCCACACAAGTTGGTGGCACATTTCAGTCCTCAAAGAGCAGGA-GCCT
* * * *
46788 TTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTCCAGTCCTCAAAGAGTAGGACGCGTTTT
1 TTTTCTTCTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * * * *
46853 CCTCTTAAAGCCCACACATGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTTCTT
66 CCTTTTAAAGCCCACACAAGTTGGTGACACCCTTCAGTCCTCAAAAAGCAGGACGCCTTTTCCTC
* * * * *
46918 TTCAAAGCCCACAGAAGTTGGTGGGACCCTTT-AGTCCTCAAAGAGGAGGACACCT
131 TT-AAAGCCCACACAAGTTGGTGGCA-CATTTCAGTCCTCAAAGAGCAGGA-GCCT
* * * * * *
46973 TTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGTAGGATGCCTTCT
1 TTTTCTTCTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * *
47038 CC-TTCAAAGCCCACACAAATTGGTGGCA-CCTCCTAGTCCTTAAAGAGCAGGAC
66 CCTTTTAAAGCCCACACAAGTTGGTGACACCCTTC-AGTCCTCAAAAAGCAGGAC
47091 ACACTTCATT
Statistics
Matches: 542, Mismatches: 88, Indels: 54
0.79 0.13 0.08
Matches are distributed among these distances:
168 1 0.00
169 128 0.24
170 4 0.01
171 5 0.01
172 2 0.00
173 2 0.00
176 4 0.01
177 4 0.01
180 2 0.00
182 3 0.01
183 56 0.10
184 178 0.33
185 147 0.27
186 6 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (183 bp):
TTTTCTTCTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCCTTTT
CCTTTTAAAGCCCACACAAGTTGGTGACACCCTTCAGTCCTCAAAAAGCAGGACGCCTTTTCCTC
TTAAAGCCCACACAAGTTGGTGGCACATTTCAGTCCTCAAAGAGCAGGAGCCT
Found at i:46802 original size:62 final size:61
Alignment explanation
Indices: 46705--47090 Score: 433
Period size: 62 Copynumber: 6.3 Consensus size: 61
46695 TTCCCCTTTT
* *
46705 GTCCTCAAAGAGCAGGATGCTTTTTC-CTTCTAAAGCCCACACAAGTTGGTGGCACCTTTCA
1 GTCCTCAAAGAGTAGGACGCTTTTTCTCTTC-AAAGCCCACACAAGTTGGTGGCACCTTTCA
* * * * *
46766 ATCCTCAAAGAGTAGAACGTCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTCCA
1 GTCCTCAAAGAGTAGGACG-CTTTTTCTCTTCAAAGCCCACACAAGTTGGTGGCACCTTTCA
* *
46828 GTCCTCAAAGAGTAGGACGCGTTTTCCTCTT-AAAGCCCACACATGTTGGTGGCACCTTTCA
1 GTCCTCAAAGAGTAGGACGC-TTTTTCTCTTCAAAGCCCACACAAGTTGGTGGCACCTTTCA
* * * * *
46889 GTCCTCAAAGAGCAGGACACCTTTTTCTTTTCAAAGCCCACAGAAGTTGGTGGGACCCTTT-A
1 GTCCTCAAAGAGTAGGAC-GCTTTTTCTCTTCAAAGCCCACACAAGTTGGTGGCA-CCTTTCA
* * * *
46951 GTCCTCAAAGAGGAGGACACCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCTA
1 GTCCTCAAAGAGTAGGAC-GCTTTTTCTCTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-A
* * * * *
47013 GTCCTCAAAGAGTAGGATGCCTTCTC-CTTCAAAGCCCACACAAATTGGTGGCACC-TCCTA
1 GTCCTCAAAGAGTAGGACGCTTTTTCTCTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-A
* *
47073 GTCCTTAAAGAGCAGGAC
1 GTCCTCAAAGAGTAGGAC
47091 ACACTTCATT
Statistics
Matches: 280, Mismatches: 37, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
60 47 0.17
61 75 0.27
62 150 0.54
63 8 0.03
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27
Consensus pattern (61 bp):
GTCCTCAAAGAGTAGGACGCTTTTTCTCTTCAAAGCCCACACAAGTTGGTGGCACCTTTCA
Found at i:46938 original size:292 final size:292
Alignment explanation
Indices: 46413--46970 Score: 859
Period size: 292 Copynumber: 1.9 Consensus size: 292
46403 GCACATTTCA
* * * **
46413 GTCCTCAAAGAGCAGGACACTTTTTGCTTCTGAAGCCCACATAAGTTGGTGGCACCTTCCGGTCC
1 GTCCTCAAAGAGCAGGACACTTTTTCCTTCTAAAGCCCACACAAGTTGGTGGCACCTTCCAATCC
* * * *
46478 TCAAAGAGCAGGATGCTTTTTTCTTTTCAAAGCCCACACAAGTTGGTGACACCCTTCAGTTCTCA
66 TCAAAGAGCAGAACGCTTTTTTCTTTTCAAAGCCCACACAAGTTGGTGACACCCTCCAGTCCTCA
46543 AAAAGTAGGACGCCTTTTCCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGA
131 AAAAGTAGGACGCCTTTTCCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGA
* **
46608 GTAGGATGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTCCTT-GACCTCAAAGAGC
196 GCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC-CCTTAGACCTCAAAGAGC
46672 AGGACACATTCCATTCCCTTCTTTTCCCCTTTT
260 AGGACACATTCCATTCCCTTCTTTTCCCCTTTT
** *
46705 GTCCTCAAAGAGCAGGATGCTTTTTCCTTCTAAAGCCCACACAAGTTGGTGGCACCTTTCAATCC
1 GTCCTCAAAGAGCAGGACACTTTTTCCTTCTAAAGCCCACACAAGTTGGTGGCACCTTCCAATCC
* *
46770 TCAAAGAGTAGAACG-TCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCTCCAGTCCTC
66 TCAAAGAGCAGAACGCT-TTTTTCTTTTCAAAGCCCACACAAGTTGGTGACACCCTCCAGTCCTC
* * *
46834 AAAGAGTAGGACGCGTTTTCCTCTTAAAGCCCACACATGTTGGTGGCACCTTTCAGTCCTCAAAG
130 AAAAAGTAGGACGCCTTTTCCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAG
* * * * *
46899 AGCAGGACACCTTTTTCTTTTCAAAGCCCACAGAAGTTGGTGGGACCCTTTAGTCCTCAAAGAGG
195 AGCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCCTTAGACCTCAAAGAGC
46964 AGGACAC
260 AGGACAC
46971 CTTTTTCTTT
Statistics
Matches: 239, Mismatches: 25, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
291 4 0.02
292 235 0.98
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (292 bp):
GTCCTCAAAGAGCAGGACACTTTTTCCTTCTAAAGCCCACACAAGTTGGTGGCACCTTCCAATCC
TCAAAGAGCAGAACGCTTTTTTCTTTTCAAAGCCCACACAAGTTGGTGACACCCTCCAGTCCTCA
AAAAGTAGGACGCCTTTTCCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGA
GCAGGACACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCCCTTAGACCTCAAAGAGCA
GGACACATTCCATTCCCTTCTTTTCCCCTTTT
Found at i:47199 original size:105 final size:105
Alignment explanation
Indices: 47013--47239 Score: 350
Period size: 105 Copynumber: 2.2 Consensus size: 105
47003 GCACCTTCTA
* *
47013 GTCCTCAAAGAGTAGGATGCCTTCTCCTTCAAAGCCCACACAAATTGGTGGCACCTCCTAGTCCT
1 GTCCTCAAAGAGTAGGACGCCTTCTCCTTCAAAGCCCACACAAATTCGTGGCACCTCCTAGTCCT
*
47078 TAAAGAGCAGGACACACTTCATTTCCTTCTTT-TCCCTTTT
66 CAAAGAGCAGGACACACTTCATTTCCTT-TTTCTCCCTTTT
* * *
47118 GTCCTCAAAGAGCT-GGACGTCTTCTCTTTCAAAGCCCACACAAGTTCGTGGCACCTCCTAGTCC
1 GTCCTCAAAGAG-TAGGACGCCTTCTCCTTCAAAGCCCACACAAATTCGTGGCACCTCCTAGTCC
* *
47182 TCAAAGGGCAGGGCACACTTCATTTCCTTTTTCTCCCTTTT
65 TCAAAGAGCAGGACACACTTCATTTCCTTTTTCTCCCTTTT
47223 GTCCTCAAAGAGTAGGA
1 GTCCTCAAAGAGTAGGA
47240 TGCACTTTAT
Statistics
Matches: 111, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
104 4 0.04
105 106 0.95
106 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (105 bp):
GTCCTCAAAGAGTAGGACGCCTTCTCCTTCAAAGCCCACACAAATTCGTGGCACCTCCTAGTCCT
CAAAGAGCAGGACACACTTCATTTCCTTTTTCTCCCTTTT
Found at i:47589 original size:85 final size:80
Alignment explanation
Indices: 47467--47623 Score: 181
Period size: 85 Copynumber: 1.9 Consensus size: 80
47457 ACTTTATTTT
* ** *
47467 TCTTTTTCTTTTATCCTCAAAGAGCAAGACGTATTTCATTTTCCTTTTTTTCCTTTGTCCTCGAA
1 TCTTTTTCCTTTATCCTCAAAGAGCAAGACCCATTTCA--TT-C-TCTTTTCCTTTGTCCTC-AA
*
47532 AAACT-GGACACTTTCCTTG
61 AAAATGGGACACTTTCCTTG
* * *
47551 TCTTTCTTCCTTTGTCCTCAAGGAGCAAGACCCGTTTCATTCTCTTTTCCTTTGTCCTCAAAAAA
1 TCTTT-TTCCTTTATCCTCAAAGAGCAAGACCCATTTCATTCTCTTTTCCTTTGTCCTCAAAAAA
47616 TGGGACAC
65 TGGGACAC
47624 CCCTTCTATT
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
80 6 0.10
81 22 0.35
82 1 0.02
83 2 0.03
84 5 0.08
85 27 0.43
ACGTcount: A:0.20, C:0.26, G:0.12, T:0.41
Consensus pattern (80 bp):
TCTTTTTCCTTTATCCTCAAAGAGCAAGACCCATTTCATTCTCTTTTCCTTTGTCCTCAAAAAAT
GGGACACTTTCCTTG
Found at i:48220 original size:20 final size:21
Alignment explanation
Indices: 48195--48251 Score: 100
Period size: 20 Copynumber: 2.8 Consensus size: 21
48185 TTTTCACAAT
48195 TTGTATCGATACATTGT-TCA
1 TTGTATCGATACATTGTCTCA
48215 TTGTATCGATACATT-TCTCA
1 TTGTATCGATACATTGTCTCA
48235 TTGTATCGATACATTGT
1 TTGTATCGATACATTGT
48252 ATTGATACAT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
19 1 0.03
20 33 0.94
21 1 0.03
ACGTcount: A:0.25, C:0.16, G:0.14, T:0.46
Consensus pattern (21 bp):
TTGTATCGATACATTGTCTCA
Found at i:48251 original size:13 final size:13
Alignment explanation
Indices: 48233--48262 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
48223 ATACATTTCT
48233 CATTGTATCGATA
1 CATTGTATCGATA
*
48246 CATTGTATTGATA
1 CATTGTATCGATA
48259 CATT
1 CATT
48263 CTGGGTTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:50781 original size:79 final size:79
Alignment explanation
Indices: 50644--50832 Score: 202
Period size: 79 Copynumber: 2.4 Consensus size: 79
50634 TCATTCATGT
* ** ** * **
50644 TTTTATTTCCAAAACACCAATTTTTTACAATCGGGGATACTCCAACCCCATTATTTTCG-CGGGG
1 TTTTATTTCCAAAACATCAATTTTCCACAATCGACGATACTCAAACCCCATTATTTTCGAAAGGG
* *
50708 ATACTCCAATCTCGA
66 ATACTCC-ACCCCGA
* * **
50723 TTTTATTTCCAAAACATCGATTTTCCACCATCGACGATACTCTAAACCCTGTTA-TTTCGAAAGG
1 TTTTATTTCCAAAACATCAATTTTCCACAATCGACGATACTC-AAACCCCATTATTTTCGAAAGG
50787 GATACTCCACCCCGA
65 GATACTCCACCCCGA
* *
50802 TTTTAATTCTAAAACATCAATTTTCCACAAT
1 TTTTATTTCCAAAACATCAATTTTCCACAAT
50833 TATGGATACT
Statistics
Matches: 90, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
79 72 0.80
80 18 0.20
ACGTcount: A:0.30, C:0.26, G:0.10, T:0.33
Consensus pattern (79 bp):
TTTTATTTCCAAAACATCAATTTTCCACAATCGACGATACTCAAACCCCATTATTTTCGAAAGGG
ATACTCCACCCCGA
Found at i:50997 original size:51 final size:51
Alignment explanation
Indices: 50928--51024 Score: 167
Period size: 51 Copynumber: 1.9 Consensus size: 51
50918 TACTTCAAAC
* *
50928 CCGATTTTATTTCTAAAACATCAGTTTTTCACAATCGGGGATACTCTAACT
1 CCGATTTTATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCTAACT
*
50979 CCGATTTTATTTCCAAAACATCAATTTTTCGCAATCGGGGATACTC
1 CCGATTTTATTTCCAAAACATCAATTTTTCACAATCGGGGATACTC
51025 CAACCCCGTT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (51 bp):
CCGATTTTATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCTAACT
Found at i:51051 original size:130 final size:130
Alignment explanation
Indices: 50703--51051 Score: 459
Period size: 130 Copynumber: 2.7 Consensus size: 130
50693 ATTATTTTCG
* * * * ** *
50703 CGGGGATACTCCAA-TCTCGATTTTATTTCCAAAACATCGATTTTCCACCATCGACGATACTCTA
1 CGGGGATACTCTAACTC-CGATTTTATTTCCAAAACATCAATTTTTCACAATCGGGGATACTC-C
* * * *
50767 AACCCTGTTATTTCGAAAGGGATAC-TCCACCCCGATTTTAATTCTAAAACATCAATTTTCCACA
64 AACCCCGTTATTTCCAAAGGGATACTTCAAACCCGATTTTAATTCTAAAACATCAATTTTCCACA
50831 AT
129 AT
*** * *
50833 TATGGATACTCTAACTTCGATTTTATTTCCAAAATATCAATTTTTCACAATCGGGGATACTCCAA
1 CGGGGATACTCTAACTCCGATTTTATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAA
* * * *
50898 CCCCGTTATTTCCAAAGGAATACTTCAAACCCGATTTTATTTCTAAAACATCAGTTTTTCACAAT
66 CCCCGTTATTTCCAAAGGGATACTTCAAACCCGATTTTAATTCTAAAACATCAATTTTCCACAAT
*
50963 CGGGGATACTCTAACTCCGATTTTATTTCCAAAACATCAATTTTTCGCAATCGGGGATACTCCAA
1 CGGGGATACTCTAACTCCGATTTTATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAA
* *
51028 CCCCGTTATTTCTAAGGGGATACT
66 CCCCGTTATTTCCAAAGGGATACT
51052 CCAGCCCCGT
Statistics
Matches: 188, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
129 22 0.12
130 165 0.88
131 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (130 bp):
CGGGGATACTCTAACTCCGATTTTATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAA
CCCCGTTATTTCCAAAGGGATACTTCAAACCCGATTTTAATTCTAAAACATCAATTTTCCACAAT
Found at i:51796 original size:20 final size:20
Alignment explanation
Indices: 51763--51803 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
51753 AAAGGTCAAA
*
51763 ACCTTGAAAGGTATCGATAC
1 ACCTTCAAAGGTATCGATAC
*
51783 ACCTTCAAATGTATCGATAC
1 ACCTTCAAAGGTATCGATAC
51803 A
1 A
51804 GATTGCACAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.27
Consensus pattern (20 bp):
ACCTTCAAAGGTATCGATAC
Found at i:58981 original size:21 final size:21
Alignment explanation
Indices: 58948--58992 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
58938 TTGCAAGTTG
*
58948 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
58970 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
58990 AAA
1 AAA
58993 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:60129 original size:8 final size:8
Alignment explanation
Indices: 60116--60141 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
60106 ATTTGATTAA
60116 ATTTTGTG
1 ATTTTGTG
60124 ATTTTGTG
1 ATTTTGTG
60132 ATTTTGTG
1 ATTTTGTG
60140 AT
1 AT
60142 GAATGATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:62216 original size:20 final size:22
Alignment explanation
Indices: 62191--62235 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
62181 TTTTGCAAAT
62191 AAATTTT-T-ATTAAGGGGGAG
1 AAATTTTATGATTAAGGGGGAG
*
62211 AAATTTTATGTTTAAGGGGGAG
1 AAATTTTATGATTAAGGGGGAG
62233 AAA
1 AAA
62236 GAAATATGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.32
21 1 0.05
22 14 0.64
ACGTcount: A:0.38, C:0.00, G:0.29, T:0.33
Consensus pattern (22 bp):
AAATTTTATGATTAAGGGGGAG
Found at i:62243 original size:23 final size:22
Alignment explanation
Indices: 62200--62244 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
62190 TAAATTTTTA
***
62200 TTAAGGGGGAGAAATTTTATGT
1 TTAAGGGGGAGAAAAAATATGT
62222 TTAAGGGGGAGAAAGAAATATGT
1 TTAAGGGGGAGAAA-AAATATGT
62245 GATTATAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.33, T:0.29
Consensus pattern (22 bp):
TTAAGGGGGAGAAAAAATATGT
Found at i:62839 original size:20 final size:20
Alignment explanation
Indices: 62811--62864 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
62801 AAAACCCTGA
*
62811 AAAGTATCGATACAGCTT-C
1 AAAGTATCGATACAGATTGC
62830 AAATGTATCGATACAGATTGC
1 AAA-GTATCGATACAGATTGC
*
62851 ACAGTATCGATACA
1 AAAGTATCGATACA
62865 TTGTATCGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
19 3 0.10
20 25 0.81
21 3 0.10
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.26
Consensus pattern (20 bp):
AAAGTATCGATACAGATTGC
Found at i:62872 original size:13 final size:13
Alignment explanation
Indices: 62854--62878 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62844 AGATTGCACA
62854 GTATCGATACATT
1 GTATCGATACATT
62867 GTATCGATACAT
1 GTATCGATACAT
62879 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:62891 original size:20 final size:21
Alignment explanation
Indices: 62866--62918 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
62856 ATCGATACAT
*
62866 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGTA-AAGAA
*
62886 TGTATCGATACTTGTAAAGAA
1 TGTATCGATACATGTAAAGAA
62907 TGTATCGATACA
1 TGTATCGATACA
62919 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGTAAAGAA
Found at i:63003 original size:20 final size:20
Alignment explanation
Indices: 62960--63011 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
62950 CTTAACTGTT
* *
62960 TGTATCGATACA-CGCAAGA
1 TGTATCGATACATCCCAAAA
62979 TGTATCGATACATCCCAAAA
1 TGTATCGATACATCCCAAAA
62999 TGTATCGATACAT
1 TGTATCGATACAT
63012 TGGCTTGTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 12 0.40
20 18 0.60
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (20 bp):
TGTATCGATACATCCCAAAA
Found at i:63077 original size:20 final size:20
Alignment explanation
Indices: 63052--63104 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
63042 TTCAAATGCA
63052 TGTATCGATACATCCCAAAT
1 TGTATCGATACATCCCAAAT
63072 TGTATCGATACATCCCAAAT
1 TGTATCGATACATCCCAAAT
63092 TGTATCGATACAT
1 TGTATCGATACAT
63105 TTACACGGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (20 bp):
TGTATCGATACATCCCAAAT
Found at i:67536 original size:13 final size:14
Alignment explanation
Indices: 67504--67542 Score: 62
Period size: 13 Copynumber: 2.9 Consensus size: 14
67494 ATAATCACCC
*
67504 TGTATCGATACAGG
1 TGTATCGATACAGA
67518 TGTATCGATACA-A
1 TGTATCGATACAGA
67531 TGTATCGATACA
1 TGTATCGATACA
67543 TAGAATTTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (14 bp):
TGTATCGATACAGA
Found at i:69627 original size:15 final size:15
Alignment explanation
Indices: 69591--69628 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
69581 TTCATCAATT
* *
69591 TCATTTGGAGCTTCT
1 TCATTTTGAGCTTCC
69606 TCATTTTGAGCTTCC
1 TCATTTTGAGCTTCC
69621 TCATTTTG
1 TCATTTTG
69629 GACATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.13, C:0.21, G:0.16, T:0.50
Consensus pattern (15 bp):
TCATTTTGAGCTTCC
Found at i:71462 original size:21 final size:21
Alignment explanation
Indices: 71433--71477 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
71423 AAGTTTTCAT
*
71433 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
71453 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
71475 TTT
1 TTT
71478 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:73698 original size:13 final size:13
Alignment explanation
Indices: 73680--73705 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73670 CAATTTTTTG
73680 TGTATCGATACAT
1 TGTATCGATACAT
73693 TGTATCGATACAT
1 TGTATCGATACAT
73706 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:73770 original size:21 final size:21
Alignment explanation
Indices: 73744--73819 Score: 82
Period size: 21 Copynumber: 3.7 Consensus size: 21
73734 CTGCCAAGAA
*
73744 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
73765 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
*
73785 ATGTATCGATACATCATTTTC
1 ATGTATCGATACATCTTTTTC
*
73806 ATGTACCGATACAT
1 ATGTATCGATACAT
73820 TGCAACATGT
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
20 15 0.35
21 28 0.65
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:73790 original size:20 final size:20
Alignment explanation
Indices: 73765--73837 Score: 78
Period size: 20 Copynumber: 3.6 Consensus size: 20
73755 CATCTTTTTT
73765 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
*
73785 ATGTATCGATACA-T-CATTTTC
1 ATGTATCGATACATTGCA---AC
*
73806 ATGTACCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
*
73826 ATGTATCAATAC
1 ATGTATCGATAC
73838 TTTGAATTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
18 2 0.05
19 1 0.02
20 24 0.56
21 13 0.30
22 1 0.02
23 2 0.05
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:73810 original size:41 final size:41
Alignment explanation
Indices: 73744--73837 Score: 152
Period size: 41 Copynumber: 2.3 Consensus size: 41
73734 CTGCCAAGAA
* * *
73744 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCATTTTCATGTACCGATACATTGCAAC
73785 ATGTATCGATACATCATTTTCATGTACCGATACATTGCAAC
1 ATGTATCGATACATCATTTTCATGTACCGATACATTGCAAC
*
73826 ATGTATCAATAC
1 ATGTATCGATAC
73838 TTTGAATTGT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (41 bp):
ATGTATCGATACATCATTTTCATGTACCGATACATTGCAAC
Found at i:74250 original size:46 final size:46
Alignment explanation
Indices: 74178--74437 Score: 270
Period size: 46 Copynumber: 5.7 Consensus size: 46
74168 CTTTACTAAA
* * * *
74178 CAAACCCTTTTCATTCTCGTTTGACTGTATCGGTTACCACCCTGGT
1 CAAACCCTTTTCACTATCATTTGACTGTATCGGTTACCACCCTAGT
* * ** * * * *
74224 CAAATCTTTTTTGCTGTCATTTGACTGTATTGATTATCACCCTAGT
1 CAAACCCTTTTCACTATCATTTGACTGTATCGGTTACCACCCTAGT
* * *
74270 CAAACCCTTTTCATTATCAATCGACTGTATCGGTTATCC-CCCTAGT
1 CAAACCCTTTTCACTATCATTTGACTGTATCGGTTA-CCACCCTAGT
** * * *
74316 CAAACCCTTTTCGTTATCATTTGACTTTATCAGTTACCACCCTGGT
1 CAAACCCTTTTCACTATCATTTGACTGTATCGGTTACCACCCTAGT
* * * *
74362 CAAACCCTTTTCACTCTCATTTGAGTATATCAGTTACCACCCTAGT
1 CAAACCCTTTTCACTATCATTTGACTGTATCGGTTACCACCCTAGT
* *
74408 CAAACCCTTTTCATTCTCATTTGACTGTAT
1 CAAACCCTTTTCACTATCATTTGACTGTAT
74438 TTGATCAAAC
Statistics
Matches: 175, Mismatches: 37, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
45 2 0.01
46 172 0.98
47 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.11, T:0.39
Consensus pattern (46 bp):
CAAACCCTTTTCACTATCATTTGACTGTATCGGTTACCACCCTAGT
Found at i:74336 original size:92 final size:93
Alignment explanation
Indices: 74178--74438 Score: 312
Period size: 92 Copynumber: 2.8 Consensus size: 93
74168 CTTTACTAAA
* * * * * * *
74178 CAAACCCTTTTCATTCTCGTTTGACTGTATCGGTTACCACCCTGGTCAAATCTTTTTTGCTGTCA
1 CAAACCCTTTTCATTCTCATTTGACTGTATCGGTTACCACCCTAGTCAAACCCTTTTCGTTATCA
* *
74243 TTTGACTGTATTGA-TTATCACCCTAGT
66 TTTGACTGTATTCAGTTACCACCCTAGT
* * *
74270 CAAACCCTTTTCATTATCAATCGACTGTATCGGTTATCC-CCCTAGTCAAACCCTTTTCGTTATC
1 CAAACCCTTTTCATTCTCATTTGACTGTATCGGTTA-CCACCCTAGTCAAACCCTTTTCGTTATC
* *
74334 ATTTGACTTTA-TCAGTTACCACCCTGGT
65 ATTTGACTGTATTCAGTTACCACCCTAGT
* * * * * *
74362 CAAACCCTTTTCACTCTCATTTGAGTATATCAGTTACCACCCTAGTCAAACCCTTTTCATTCTCA
1 CAAACCCTTTTCATTCTCATTTGACTGTATCGGTTACCACCCTAGTCAAACCCTTTTCGTTATCA
74427 TTTGACTGTATT
66 TTTGACTGTATT
74439 TGATCAAACT
Statistics
Matches: 141, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
91 4 0.03
92 134 0.95
93 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.11, T:0.39
Consensus pattern (93 bp):
CAAACCCTTTTCATTCTCATTTGACTGTATCGGTTACCACCCTAGTCAAACCCTTTTCGTTATCA
TTTGACTGTATTCAGTTACCACCCTAGT
Found at i:74434 original size:138 final size:137
Alignment explanation
Indices: 74178--74437 Score: 351
Period size: 138 Copynumber: 1.9 Consensus size: 137
74168 CTTTACTAAA
* * * * * ** *
74178 CAAACCCTTTTCATTCTCGTTTGACTGTATCGGTTACCACCCTGGTCAAATCTTTTTTGCTGTCA
1 CAAACCCTTTTCATTATCATTTGACTGTATCAGTTACCACCCTGGTCAAACCCTTTTCACTCTCA
* *
74243 TTTGACTGTATTGATTATCACCCTAGTCAAACCCTTTTCATTATCAATCGACTGTATCGGTTATC
66 TTTGAC-GTATTCATTACCACCCTAGTCAAACCCTTTTCATTATCAATCGACTGTATCGGTTATC
74308 CCCCTAGT
130 CCCCTAGT
* *
74316 CAAACCCTTTTCGTTATCATTTGACTTTATCAGTTACCACCCTGGTCAAACCCTTTTCACTCTCA
1 CAAACCCTTTTCATTATCATTTGACTGTATCAGTTACCACCCTGGTCAAACCCTTTTCACTCTCA
* * *
74381 TTTGA-GTATATCAGTTACCACCCTAGTCAAACCCTTTTCATTCTCATTTGACTGTAT
66 TTTGACGTAT-TCA-TTACCACCCTAGTCAAACCCTTTTCATTATCAATCGACTGTAT
74438 TTGATCAAAC
Statistics
Matches: 105, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
136 4 0.04
137 2 0.02
138 99 0.94
ACGTcount: A:0.22, C:0.28, G:0.11, T:0.39
Consensus pattern (137 bp):
CAAACCCTTTTCATTATCATTTGACTGTATCAGTTACCACCCTGGTCAAACCCTTTTCACTCTCA
TTTGACGTATTCATTACCACCCTAGTCAAACCCTTTTCATTATCAATCGACTGTATCGGTTATCC
CCCTAGT
Found at i:74722 original size:85 final size:84
Alignment explanation
Indices: 74596--75385 Score: 350
Period size: 85 Copynumber: 9.6 Consensus size: 84
74586 AGCTATCACT
* * * * *** * * *
74596 TTTTATCTTTTGTTGACTTATCGGTTTAATCTTGATTAACTTCTTTATCTTTTGTTTACTTGTCA
1 TTTTATCTTTTATTGACTTGTTGGTTCAATCCCAATCAACTTCTTTATCCTTTATTTACTTGTC-
* *
74661 GTTTAGTCCTAGGTAAGTCT
65 GTTTAGTCCTAGGTAAATCC
* *
74681 TTTTATCTTTTATTGACTTGTTGGTTCAATCCCAGTCAACTTCTTTATCCGTTATTTACTTGTC-
1 TTTTATCTTTTATTGACTTGTTGGTTCAATCCCAATCAACTTCTTTATCCTTTATTTACTTGTCG
* *
74745 TTTAGTTCTGGGTAAATCC
66 TTTAGTCCTAGGTAAATCC
* * ** *
74764 TTTTATCTTTTGTTGACTTATCAGTTCAATCTCAATCAACTTCTTTATCCTTTATTTACCTAT-T
1 TTTTATCTTTTATTGACTTGTTGGTTCAATCCCAATCAACTTCTTTATCCTTTATTTA-CT-TGT
* *
74828 GGTTTAGTCTTAGGTAAATCC
64 CGTTTAGTCCTAGGTAAATCC
* * **** * * * ** *
74849 TTTTATCCTTTATTGACTTGTTGATTCAATCTTGGTTAATTTCTTTA-CC--TGTTGGC---TCA
1 TTTTATCTTTTATTGACTTGTTGGTTCAATCCCAATCAACTTCTTTATCCTTTATTTACTTGTCG
* *
74908 ATT--T--TGGGTAAATCC
66 TTTAGTCCTAGGTAAATCC
* * *** * * * * *
74923 TTTTATCCTTTGTTGACTTGTCAATTTAATCCCGATCAACTTCTTTATCTTTTGTTTACCTGTCG
1 TTTTATCTTTTATTGACTTGTTGGTTCAATCCCAATCAACTTCTTTATCCTTTATTTACTTGTC-
* * * *
74988 GCTCAGTCTTGGGTAAATCC
65 GTTTAGTCCTAGGTAAATCC
* * * ** **** * ** * * *
75008 TTTTATCCTTTGTTGACTTATCAGTTCAATCTTGGTCAACTTTTTTTATTTTTTTGTTTACCTAT
1 TTTTATCTTTTATTGACTTGTTGGTTCAATCCCAATCAAC-TTCTTTA-TCCTTTATTTACTTGT
*
75073 CGATTTAGT-CTCGAGTAAATCC
64 CG-TTTAGTCCTAG-GTAAATCC
* * * * *** *
75095 TTTTATCCTTTGTTGATTTGTCGGTTCAATCTTGATCAACATCTTTA--C-TTA--T-C--G--G
1 TTTTATCTTTTATTGACTTGTTGGTTCAATCCCAATCAACTTCTTTATCCTTTATTTACTTGTCG
* * * *
75150 CTCAGTCTTGGGTAAATCC
66 TTTAGTCCTAGGTAAATCC
* * * * * * * * * *
75169 TTGTATCCTTTGTTAACTTATCGGTTCAATCCTAGTAAACTTCTTTATCCTTTGTTTACTTGTCG
1 TTTTATCTTTTATTGACTTGTTGGTTCAATCCCAATCAACTTCTTTATCCTTTATTTACTTGTC-
* *
75234 GCTTAGT-ATCAGGTAAATCC
65 GTTTAGTCCT-AGGTAAATCC
* * ** * * *
75254 TTTTATCCTTTGTTGACTTGTCAGTTCAATCCCGATCAACTTCTTTATCCTTTATTTACCTATCG
1 TTTTATCTTTTATTGACTTGTTGGTTCAATCCCAATCAACTTCTTTATCCTTTATTTACTTGTC-
* *
75319 GTTTAGTCCTAGATAAATCT
65 GTTTAGTCCTAGGTAAATCC
* * * * ***
75339 TTTTATCTTCTGTTGGCTTGTTGGTTAAATCCTGGTCAACTTCTTTA
1 TTTTATCTTTTATTGACTTGTTGGTTCAATCCCAATCAACTTCTTTA
75386 CTTGTCAACT
Statistics
Matches: 551, Mismatches: 122, Indels: 64
0.75 0.17 0.09
Matches are distributed among these distances:
74 98 0.18
75 4 0.01
76 2 0.00
77 7 0.01
78 3 0.01
79 2 0.00
80 4 0.01
81 2 0.00
82 6 0.01
83 67 0.12
84 6 0.01
85 272 0.49
86 15 0.03
87 63 0.11
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (84 bp):
TTTTATCTTTTATTGACTTGTTGGTTCAATCCCAATCAACTTCTTTATCCTTTATTTACTTGTCG
TTTAGTCCTAGGTAAATCC
Found at i:74983 original size:159 final size:159
Alignment explanation
Indices: 74753--75043 Score: 422
Period size: 159 Copynumber: 1.8 Consensus size: 159
74743 TCTTTAGTTC
* * *
74753 TGGGTAAATCCTTTTATCTTTTGTTGACTTATCAGTTCAATCTCAATCAACTTCTTTATCCTTTA
1 TGGGTAAATCCTTTTATCCTTTGTTGACTTATCAATTCAATCCCAATCAACTTCTTTATCCTTTA
* * * * *
74818 TTTACCTATTGGTTTAGTCTTAGGTAAATCCTTTTATCCTTTATTGACTTGT-TGATTCAATCTT
66 TTTACCTATCGGCTCAGTCTTAGGTAAATCCTTTTATCCTTTATTGACTTATCAG-TTCAATCTT
74882 GGTTAATTTCTTTACCTGTTGGCTCAATTT
130 GGTTAATTTCTTTACCTGTTGGCTCAATTT
* * * * *
74912 TGGGTAAATCCTTTTATCCTTTGTTGACTTGTCAATTTAATCCCGATCAACTTCTTTATCTTTTG
1 TGGGTAAATCCTTTTATCCTTTGTTGACTTATCAATTCAATCCCAATCAACTTCTTTATCCTTTA
* * *
74977 TTTACCTGTCGGCTCAGTCTTGGGTAAATCCTTTTATCCTTTGTTGACTTATCAGTTCAATCTTG
66 TTTACCTATCGGCTCAGTCTTAGGTAAATCCTTTTATCCTTTATTGACTTATCAGTTCAATCTTG
75042 GT
131 GT
75044 CAACTTTTTT
Statistics
Matches: 115, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
159 114 0.99
160 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (159 bp):
TGGGTAAATCCTTTTATCCTTTGTTGACTTATCAATTCAATCCCAATCAACTTCTTTATCCTTTA
TTTACCTATCGGCTCAGTCTTAGGTAAATCCTTTTATCCTTTATTGACTTATCAGTTCAATCTTG
GTTAATTTCTTTACCTGTTGGCTCAATTT
Found at i:75041 original size:43 final size:43
Alignment explanation
Indices: 74905--75128 Score: 123
Period size: 43 Copynumber: 5.2 Consensus size: 43
74895 ACCTGTTGGC
* *
74905 TCAATTTTGGGTAAATCCTTTTATCCTTTGTTGACTTGTCAAT
1 TCAATCTTGGGTAAATCCTTTTATCCTTTGTTGACTTGTCAGT
* ** * * * * * * * *
74948 TTAATC-CCGATCAA-CTTCTTTATCTTTTGTTTACCTGTCGGC
1 TCAATCTTGGGTAAATCCT-TTTATCCTTTGTTGACTTGTCAGT
* *
74990 TCAGTCTTGGGTAAATCCTTTTATCCTTTGTTGACTTATCAGT
1 TCAATCTTGGGTAAATCCTTTTATCCTTTGTTGACTTGTCAGT
* ** ** * * *
75033 TCAATCTT-GGTCAACTTTTTTTATTTTTTTGTTTACCTATC-GAT
1 TCAATCTTGGGT-AAATCCTTTTA-TCCTTTGTTGACTTGTCAG-T
* * * * * *
75077 TTAGTCTCGAGTAAATCCTTTTATCCTTTGTTGATTTGTCGGT
1 TCAATCTTGGGTAAATCCTTTTATCCTTTGTTGACTTGTCAGT
75120 TCAATCTTG
1 TCAATCTTG
75129 ATCAACATCT
Statistics
Matches: 123, Mismatches: 50, Indels: 16
0.65 0.26 0.08
Matches are distributed among these distances:
41 2 0.02
42 29 0.24
43 60 0.49
44 30 0.24
45 2 0.02
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (43 bp):
TCAATCTTGGGTAAATCCTTTTATCCTTTGTTGACTTGTCAGT
Found at i:75107 original size:87 final size:85
Alignment explanation
Indices: 74915--75546 Score: 400
Period size: 85 Copynumber: 7.7 Consensus size: 85
74905 TCAATTTTGG
* * **
74915 GTAAATCCTTTTATCCTTTGTTGACTTGTCAATTTAATCCCGATCAACTTCTTTATCTTTTGTTT
1 GTAAATCCTTTTATCCTTTGTTGACTTGTCAGTTCAATCTTGATCAACTTCTTTATCTTTTGTTT
* * * *
74980 ACCTGTCGGCTCAGTCTTGG
66 ACCTATCGACTCAGTCTCGA
* * * *
75000 GTAAATCCTTTTATCCTTTGTTGACTTATCAGTTCAATCTTGGTCAACTTTTTTTATTTTTTTGT
1 GTAAATCCTTTTATCCTTTGTTGACTTGTCAGTTCAATCTTGATCAAC-TTCTTTA-TCTTTTGT
* *
75065 TTACCTATCGATTTAGTCTCGA
64 TTACCTATCGACTCAGTCTCGA
* *
75087 GTAAATCCTTTTATCCTTTGTTGATTTGTCGGTTCAATCTTGATCAA---C---ATC-----TTT
1 GTAAATCCTTTTATCCTTTGTTGACTTGTCAGTTCAATCTTGATCAACTTCTTTATCTTTTGTTT
* * * *
75141 ACTTATCGGCTCAGTCTTGG
66 ACCTATCGACTCAGTCTCGA
* * * * * * *
75161 GTAAATCCTTGTATCCTTTGTTAACTTATCGGTTCAATCCT-AGTAAACTTCTTTATCCTTTGTT
1 GTAAATCCTTTTATCCTTTGTTGACTTGTCAGTTCAATCTTGA-TCAACTTCTTTATCTTTTGTT
* * * * *
75225 TACTTGTCGGCTTAGTATC-A
65 TACCTATCGACTCAGTCTCGA
** * *
75245 GGTAAATCCTTTTATCCTTTGTTGACTTGTCAGTTCAATCCCGATCAACTTCTTTATCCTTTATT
1 -GTAAATCCTTTTATCCTTTGTTGACTTGTCAGTTCAATCTTGATCAACTTCTTTATCTTTTGTT
** * *
75310 TACCTATCGGTTTAGTC-CTA
65 TACCTATCGACTCAGTCTCGA
* * ** * * *
75330 GATAAATCTTTTTAT-CTTCTGTTGGCTTGTTGGTTAAATCCTGGTCAACTTCTTTA-C--TTG-
1 G-TAAATCCTTTTATCCTT-TGTTGACTTGTCAGTTCAATCTTGATCAACTTCTTTATCTTTTGT
* *
75390 -T--C-A---ACTTAGTCCCGA
64 TTACCTATCGACTCAGTCTCGA
* * * * * * * *
75405 GTAAATCTTTTTATCCTCTGTTGACTTATCGGTTCCATCTCGGTCAACTTCTTTATCCTTTGTTT
1 GTAAATCCTTTTATCCTTTGTTGACTTGTCAGTTCAATCTTGATCAACTTCTTTATCTTTTGTTT
* * * * *
75470 ACTTCTCGATTTAGTCCCGA
66 ACCTATCGACTCAGTCTCGA
* * ** * **
75490 GTAAATCCTTTTATCCTTTGTT-ATTTATTGGTTTAATCCCGATCAACTTCTTTATCT
1 GTAAATCCTTTTATCCTTTGTTGACTTGTCAGTTCAATCTTGATCAACTTCTTTATCT
75547 ATCGGCTTAG
Statistics
Matches: 436, Mismatches: 79, Indels: 65
0.75 0.14 0.11
Matches are distributed among these distances:
73 1 0.00
74 105 0.24
75 6 0.01
77 5 0.01
78 1 0.00
79 2 0.00
80 5 0.01
82 2 0.00
84 34 0.08
85 202 0.46
86 7 0.02
87 66 0.15
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.47
Consensus pattern (85 bp):
GTAAATCCTTTTATCCTTTGTTGACTTGTCAGTTCAATCTTGATCAACTTCTTTATCTTTTGTTT
ACCTATCGACTCAGTCTCGA
Found at i:75142 original size:246 final size:244
Alignment explanation
Indices: 74705--75545 Score: 809
Period size: 244 Copynumber: 3.5 Consensus size: 244
74695 GACTTGTTGG
* * * * * * *
74705 TTCAATCCCAGTCAACTTCTTTATCCGTTATTTACTTGTC--TTTAGT-TCTGGGTAAATCCTTT
1 TTCAATCCGAGTAAACTTCTTTATCCTTTGTTTACCTGTCGGCTCAGTAT-TGGGTAAATCCTTT
* * *
74767 TATCTTTTGTTGACTTATCAGTTCAATCTCAATCAACTTCTTTATCCTTTATTTACCTATTGGTT
65 TATCCTTTGTTGACTTATCAGTTCAATCTCGATCAACTTCTTTATCCTTTATTTACCTATCGGTT
* * * *
74832 TAGTCT-TAGGTAAATCCTTTTATCCTTTATTGACTTGTTGATTCAATCTTGGTTAATTTCTTTA
130 TAGTCTCTA-GTAAATCCTTTTATCCTTTGTTGACTTGTTGGTTCAATCTTGGTCAACTTCTTTA
* * * * * *
74896 CCTGTTGGCTCAATTTTGGGTAAATCCTTTTATCCTTTGTTGACTTGTCAA
194 CCTATCGGCTCAATCTTGGGTAAATCCTTGTATCCTTTGTTAACTTATCAA
* * * *
74947 TTTAATCCCGA-TCAACTTCTTTATCTTTTGTTTACCTGTCGGCTCAGTCTTGGGTAAATCCTTT
1 TTCAAT-CCGAGTAAACTTCTTTATCCTTTGTTTACCTGTCGGCTCAGTATTGGGTAAATCCTTT
* * * ** * *
75011 TATCCTTTGTTGACTTATCAGTTCAATCTTGGTCAACTTTTTTTATTTTTTTGTTTACCTATCGA
65 TATCCTTTGTTGACTTATCAGTTCAATCTCGATCAAC-TTCTTTA-TCCTTTATTTACCTATCGG
* * * * *
75076 TTTAGTCTCGAGTAAATCCTTTTATCCTTTGTTGATTTGTCGGTTCAATCTTGATCAACATCTTT
128 TTTAGTCTCTAGTAAATCCTTTTATCCTTTGTTGACTTGTTGGTTCAATCTTGGTCAACTTCTTT
* * **
75141 ACTTATCGGCTCAGTCTTGGGTAAATCCTTGTATCCTTTGTTAACTTATCGG
193 ACCTATCGGCTCAATCTTGGGTAAATCCTTGTATCCTTTGTTAACTTATCAA
* * * **
75193 TTCAATCCTAGTAAACTTCTTTATCCTTTGTTTACTTGTCGGCTTAGTATCAGGTAAATCCTTTT
1 TTCAATCCGAGTAAACTTCTTTATCCTTTGTTTACCTGTCGGCTCAGTATTGGGTAAATCCTTTT
* *
75258 ATCCTTTGTTGACTTGTCAGTTCAATCCCGATCAACTTCTTTATCCTTTATTTACCTATCGGTTT
66 ATCCTTTGTTGACTTATCAGTTCAATCTCGATCAACTTCTTTATCCTTTATTTACCTATCGGTTT
* * * *
75323 AGTC-CTAGATAAATCTTTTTAT-CTTCTGTTGGCTTGTTGGTTAAATCCTGGTCAACTTCTTTA
131 AGTCTCTAG-TAAATCCTTTTATCCTT-TGTTGACTTGTTGGTTCAATCTTGGTCAACTTCTTTA
* * ** * * ** * * * * * **
75386 CTTGTCAACTTAGTCCCGAGTAAATCTTTTTATCCTCTGTTGACTTATCGG
194 CCTATCGGCTCAATCTTGGGTAAATCCTTGTATCCTTTGTTAACTTATCAA
* * * * ** * *** *
75437 TTCCATCTCG-GTCAACTTCTTTATCCTTTGTTTACTTCTCGATTTAGTCCCGAGTAAATCCTTT
1 TTCAATC-CGAGTAAACTTCTTTATCCTTTGTTTACCTGTCGGCTCAGTATTGGGTAAATCCTTT
* ** * *
75501 TATCCTTTGTT-ATTTATTGGTTTAATCCCGATCAACTTCTTTATC
65 TATCCTTTGTTGACTTATCAGTTCAATCTCGATCAACTTCTTTATC
75546 TATCGGCTTA
Statistics
Matches: 498, Mismatches: 90, Indels: 21
0.82 0.15 0.03
Matches are distributed among these distances:
242 30 0.06
243 38 0.08
244 218 0.44
245 17 0.03
246 194 0.39
247 1 0.00
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.47
Consensus pattern (244 bp):
TTCAATCCGAGTAAACTTCTTTATCCTTTGTTTACCTGTCGGCTCAGTATTGGGTAAATCCTTTT
ATCCTTTGTTGACTTATCAGTTCAATCTCGATCAACTTCTTTATCCTTTATTTACCTATCGGTTT
AGTCTCTAGTAAATCCTTTTATCCTTTGTTGACTTGTTGGTTCAATCTTGGTCAACTTCTTTACC
TATCGGCTCAATCTTGGGTAAATCCTTGTATCCTTTGTTAACTTATCAA
Found at i:75189 original size:43 final size:41
Alignment explanation
Indices: 75141--75272 Score: 120
Period size: 43 Copynumber: 3.1 Consensus size: 41
75131 CAACATCTTT
75141 ACTTATCGGCTCAGTCTTGGGTAAATCCTTGTATCCTTTGTTA
1 ACTTATCGGCTCAGTCTT-GGTAAATCCTT-TATCCTTTGTTA
* * * * * *
75184 ACTTATCGGTTCAATCCTAGTAAACTTCTTTATCCTTTGTTT
1 ACTTATCGGCTCAGTCTTGGTAAA-TCCTTTATCCTTTGTTA
* * * * *
75226 ACTTGTCGGCTTAGTATCAGGTAAATCCTTTTATCCTTTGTTG
1 ACTTATCGGCTCAGTCT-TGGTAAATCC-TTTATCCTTTGTTA
75269 ACTT
1 ACTT
75273 GTCAGTTCAA
Statistics
Matches: 70, Mismatches: 16, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
42 29 0.41
43 41 0.59
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.45
Consensus pattern (41 bp):
ACTTATCGGCTCAGTCTTGGTAAATCCTTTATCCTTTGTTA
Found at i:75218 original size:42 final size:42
Alignment explanation
Indices: 75172--75473 Score: 129
Period size: 42 Copynumber: 7.4 Consensus size: 42
75162 TAAATCCTTG
*
75172 TATCCTTTGTTAACTTATCGGTTCAATCCTAGTAAACTTCTT
1 TATCCTTTGTTGACTTATCGGTTCAATCCTAGTAAACTTCTT
* * *
75214 TATCCTTTGTTTACTTGTCGGCTT-AGTAT-C-AGGTAAA-TCCTTT
1 TATCCTTTGTTGACTTATCGG-TTCA--ATCCTA-GTAAACTTC-TT
* * * *
75257 TATCCTTTGTTGACTTGTCAGTTCAATCC-CGATCAACTTCTT
1 TATCCTTTGTTGACTTATCGGTTCAATCCTAG-TAAACTTCTT
* * * * *
75299 TATCCTTTATTTACCTATCGGTTTAGTCCTAGATAAATCTT-TT
1 TATCCTTTGTTGACTTATCGGTTCAATCCTAG-TAAA-CTTCTT
* * * * * *
75342 TAT-CTTCTGTTGGCTTGTTGGTTAAATCCTGGTCAACTTCTT
1 TATCCTT-TGTTGACTTATCGGTTCAATCCTAGTAAACTTCTT
** *
75384 TA--C-TTGTCAACTTA---G-TC---CCGAGTAAATCTT-TT
1 TATCCTTTGTTGACTTATCGGTTCAATCCTAGTAAA-CTTCTT
* * * *
75416 TATCCTCTGTTGACTTATCGGTTCCAT-CTCGGTCAACTTCTT
1 TATCCTTTGTTGACTTATCGGTTCAATCCT-AGTAAACTTCTT
*
75458 TATCCTTTGTTTACTT
1 TATCCTTTGTTGACTT
75474 CTCGATTTAG
Statistics
Matches: 191, Mismatches: 43, Indels: 52
0.67 0.15 0.18
Matches are distributed among these distances:
32 10 0.05
33 3 0.02
34 1 0.01
35 9 0.05
36 1 0.01
38 1 0.01
39 8 0.04
40 1 0.01
41 11 0.06
42 83 0.43
43 58 0.30
44 5 0.03
ACGTcount: A:0.19, C:0.22, G:0.13, T:0.46
Consensus pattern (42 bp):
TATCCTTTGTTGACTTATCGGTTCAATCCTAGTAAACTTCTT
Found at i:75284 original size:159 final size:161
Alignment explanation
Indices: 74985--75300 Score: 431
Period size: 159 Copynumber: 2.0 Consensus size: 161
74975 TGTTTACCTG
* * * * *
74985 TCGGCTCAGTCTTGGGTAAATCCTTTTATCCTTTGTTGACTTATCAGTTCAATCTTGGTCAACTT
1 TCGGCTCAGTCTTGGGTAAATCCTTGTATCCTTTGTTAACTTATCAGTTCAATCCTAGTAAACTT
* ** * * *
75050 TTTTTATTTTTTTGTTTACCTATCGATTTAGTCTCGAGTAAATCCTTTTATCCTTTGTTGATTTG
66 TCTTTATTCCTTTGTTTACCTATCGACTTAGTATCGAGTAAATCCTTTTATCCTTTGTTGACTTG
* **
75115 TCGGTTCAATCTTGATCAACATCTTTACTTA
131 TCAGTTCAATCCCGATCAACATCTTTACTTA
*
75146 TCGGCTCAGTCTTGGGTAAATCCTTGTATCCTTTGTTAACTTATCGGTTCAATCCTAGTAAAC-T
1 TCGGCTCAGTCTTGGGTAAATCCTTGTATCCTTTGTTAACTTATCAGTTCAATCCTAGTAAACTT
* * *
75210 TCTTTA-TCCTTTGTTTACTTGTCGGCTTAGTATC-AGGTAAATCCTTTTATCCTTTGTTGACTT
66 TCTTTATTCCTTTGTTTACCTATCGACTTAGTATCGA-GTAAATCCTTTTATCCTTTGTTGACTT
*
75273 GTCAGTTCAATCCCGATCAACTTCTTTA
130 GTCAGTTCAATCCCGATCAACATCTTTA
75301 TCCTTTATTT
Statistics
Matches: 135, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
158 1 0.01
159 71 0.53
160 6 0.04
161 57 0.42
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (161 bp):
TCGGCTCAGTCTTGGGTAAATCCTTGTATCCTTTGTTAACTTATCAGTTCAATCCTAGTAAACTT
TCTTTATTCCTTTGTTTACCTATCGACTTAGTATCGAGTAAATCCTTTTATCCTTTGTTGACTTG
TCAGTTCAATCCCGATCAACATCTTTACTTA
Found at i:75386 original size:159 final size:158
Alignment explanation
Indices: 75223--75559 Score: 385
Period size: 159 Copynumber: 2.1 Consensus size: 158
75213 TTATCCTTTG
* * *
75223 TTTACTTGTCGGCTTAGTATCAG-GTAAATCCTTTTATCCTTTGTTGACTTGTCAGTTCAATCCC
1 TTTACTTGTCGGCTTAGT-CCAGAGTAAATCCTTTTATCCTCTGTTGACTTATCAGTTCAATCCC
* *
75287 GATCAACTTCTTTATCCTTTATTTACCTATCGGTTTAGTCCTAGA-TAAATCTTTTTAT-CTTCT
65 GATCAACTTCTTTATCCTTTATTTACCTATCGATTTAGTCC-AGAGTAAATCCTTTTATCCTT-T
* * * *
75350 GTTGGCTTGTTGGTTAAATCCTGGTCAACTTC
128 GTT-ACTTATTGGTTAAATCCCGATCAACTTC
** * * * * *
75382 TTTACTTGTCAACTTAGTCCCGAGTAAATCTTTTTATCCTCTGTTGACTTATCGGTTCCATCTCG
1 TTTACTTGTCGGCTTAGTCCAGAGTAAATCCTTTTATCCTCTGTTGACTTATCAGTTCAATCCCG
* * * * *
75447 GTCAACTTCTTTATCCTTTGTTTACTTCTCGATTTAGTCCCGAGTAAATCCTTTTATCCTTTGTT
66 ATCAACTTCTTTATCCTTTATTTACCTATCGATTTAGTCCAGAGTAAATCCTTTTATCCTTTGTT
* *
75512 ATTTATTGGTTTAATCCCGATCAACTTC
131 ACTTATTGGTTAAATCCCGATCAACTTC
*
75540 TTTA-TCTATCGGCTTAGTCC
1 TTTACT-TGTCGGCTTAGTCC
75560 TAGGTAACCA
Statistics
Matches: 148, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
157 1 0.01
158 41 0.28
159 103 0.70
160 3 0.02
ACGTcount: A:0.19, C:0.22, G:0.13, T:0.45
Consensus pattern (158 bp):
TTTACTTGTCGGCTTAGTCCAGAGTAAATCCTTTTATCCTCTGTTGACTTATCAGTTCAATCCCG
ATCAACTTCTTTATCCTTTATTTACCTATCGATTTAGTCCAGAGTAAATCCTTTTATCCTTTGTT
ACTTATTGGTTAAATCCCGATCAACTTC
Found at i:77371 original size:51 final size:51
Alignment explanation
Indices: 77306--77420 Score: 169
Period size: 51 Copynumber: 2.3 Consensus size: 51
77296 AACAGGGTTG
*
77306 GAGTTTCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAA-TCAGAGTTA
1 GAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAACT-AGAGTTA
* * * *
77357 GAGTATCCTCGATTGTGAAAAATTGATGTTTTTGAAATAAAACTAGGGTTG
1 GAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAACTAGAGTTA
77408 GAGTATCCCCGAT
1 GAGTATCCCCGAT
77421 GAAATAATGG
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
51 56 0.98
52 1 0.02
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (51 bp):
GAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAACTAGAGTTA
Found at i:77490 original size:49 final size:51
Alignment explanation
Indices: 77431--77542 Score: 140
Period size: 51 Copynumber: 2.2 Consensus size: 51
77421 GAAATAATGG
* *
77431 GGTTGGAGTATCCCCGATTGT-GAAAAAT-ATATTTTGGAAATAAAATCAGA
1 GGTTGGAGTATCCCCGATTATGGAAAAATGATATTTTAGAAATAAAA-CAGA
* * * *
77481 -GTTGGAGTATCCCCGTTTATGGAAAATTGATGTTTTAGAAATAAAACCGA
1 GGTTGGAGTATCCCCGATTATGGAAAAATGATATTTTAGAAATAAAACAGA
77531 GGTTGGAGTATC
1 GGTTGGAGTATC
77543 TCTTTGGAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
49 18 0.34
50 9 0.17
51 26 0.49
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.31
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGGAAAAATGATATTTTAGAAATAAAACAGA
Found at i:77553 original size:128 final size:130
Alignment explanation
Indices: 77255--77577 Score: 379
Period size: 128 Copynumber: 2.5 Consensus size: 130
77245 AAAATTAAAA
* * * * * *
77255 TTTTAGAGATAACAACG-GGGCTGGAGTATCCCCTCA-AAAATAACAGGGTTGGAGTTTCCCCGA
1 TTTTAGAAATAA-AACGAGGGTTGGAGTATCCCC-GATGAAATAACGGGGTTGGAGTATCCCCGA
* * *
77318 TTGTGAAAAATTGATGTTTTGGAAATAAAATCAGAGTTAGAGTATCCTCGATTGTGAAAAATTGA
64 TTGTGAAAAATTGATATTTTGGAAATAAAATCAGAGTTAGAGTATCCCCGATTATGAAAAATTGA
77383 TG
129 TG
* * *
77385 TTTTTGAAATAAAACTAGGGTTGGAGTATCCCCGATGAAATAATGGGGTTGGAGTATCCCCGATT
1 TTTTAGAAATAAAACGAGGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGTATCCCCGATT
* * *
77450 GTGAAAAA-T-ATATTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGTTTATGGAAAATTGATG
66 GTGAAAAATTGATATTTTGGAAATAAAATCAGAGTTAGAGTATCCCCGATTATGAAAAATTGATG
* ** * *
77513 TTTTAGAAATAAAACCGA-GGTTGGAGTAT-CTCTTTGGAAATAACGGGGTTTAGAGTATCCTCG
1 TTTTAGAAATAAAA-CGAGGGTTGGAGTATCCCCGAT-GAAATAACGGGG-TTGGAGTATCCCCG
77576 AT
63 AT
77578 GGGGTGTAGA
Statistics
Matches: 165, Mismatches: 23, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
127 3 0.02
128 83 0.50
129 21 0.13
130 58 0.35
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (130 bp):
TTTTAGAAATAAAACGAGGGTTGGAGTATCCCCGATGAAATAACGGGGTTGGAGTATCCCCGATT
GTGAAAAATTGATATTTTGGAAATAAAATCAGAGTTAGAGTATCCCCGATTATGAAAAATTGATG
Found at i:78298 original size:46 final size:44
Alignment explanation
Indices: 78200--78519 Score: 209
Period size: 46 Copynumber: 7.4 Consensus size: 44
78190 ACAAAAATAT
* * * * * * *
78200 GTCCTACTCTTTGAGGATAAAAGAAAAAGAA--AAATAAAATGT
1 GTCCTGCTCTTTGAGGACAAAGGGAAAAGAAGGAAATGAAGTGC
* *
78242 GCCCTGCTCTTTGAGAACTAGAAGGGAAAAGAAGGAAATGAAGTGC
1 GTCCTGCTCTTTGAGGAC-A-AAGGGAAAAGAAGGAAATGAAGTGC
78288 GTCCTGCTCTTTGAGGACAAA-GGAAAA-AAGG-AA--AAG-GC
1 GTCCTGCTCTTTGAGGACAAAGGGAAAAGAAGGAAATGAAGTGC
* *** * * *
78326 ATCCTGCTC-AAAAGGGCAAAGGAGAAAAG--GAAAATAAAGTGC
1 GTCCTGCTCTTTGAGGACAAAGG-GAAAAGAAGGAAATGAAGTGC
* * **
78368 GTCCTGCTCTTTGAGGACAAAAGGGAAAAATAAGGGAATGGAA-TAT
1 GTCCTGCTCTTTGAGGAC-AAAGGG-AAAAGAAGGAAAT-GAAGTGC
* * * *
78414 GTCCTGCTCTTTGAGGAC-AAGGG-AGAGAAGGAAAATAAAATGT
1 GTCCTGCTCTTTGAGGACAAAGGGAAAAGAAGG-AAATGAAGTGC
* * * *
78457 GTCCTGGTCTTTAAGAACAAAAGGGAAAAGAAGGAAAAGAAGTGC
1 GTCCTGCTCTTTGAGGAC-AAAGGGAAAAGAAGGAAATGAAGTGC
*
78502 GTCCTGCCCTTTGAGGAC
1 GTCCTGCTCTTTGAGGAC
78520 TAAGAAGTGC
Statistics
Matches: 211, Mismatches: 45, Indels: 41
0.71 0.15 0.14
Matches are distributed among these distances:
37 7 0.03
38 12 0.06
39 10 0.05
41 5 0.02
42 36 0.17
43 32 0.15
44 26 0.12
45 27 0.13
46 54 0.26
47 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.27, T:0.19
Consensus pattern (44 bp):
GTCCTGCTCTTTGAGGACAAAGGGAAAAGAAGGAAATGAAGTGC
Found at i:78588 original size:105 final size:105
Alignment explanation
Indices: 78457--78684 Score: 359
Period size: 105 Copynumber: 2.2 Consensus size: 105
78447 AATAAAATGT
* * *
78457 GTCCTGGTCTTTAAGAACAAAAGGGAAAAGAAGGAAAAGAAGTGCGTCCTGCCCTTTGAGGACTA
1 GTCCTGCTCTTTAAGGACAAAAGGGAAAAGAAGGAAAAGAAGTGCATCCTGCCCTTTGAGGACTA
78522 AGAAGTGCCACCT-ACTTGTGTGGGCTTTGAAAGAGAAGGC
66 AGAAGTGCCA-CTAACTTGTGTGGGCTTTGAAAGAGAAGGC
* *
78562 GTCCTGCTCTTTAAGGACAAAAGGGAAAAGAAGGAAATGAAGTGCATCCTGCTCTTTGAGGACTA
1 GTCCTGCTCTTTAAGGACAAAAGGGAAAAGAAGGAAAAGAAGTGCATCCTGCCCTTTGAGGACTA
* * *
78627 GGAGGTGCCACTAACTTGTGTGGGCTTTGAAGGAGAAGGC
66 AGAAGTGCCACTAACTTGTGTGGGCTTTGAAAGAGAAGGC
*
78667 GTCCTGCTCTTTGAGGAC
1 GTCCTGCTCTTTAAGGAC
78685 TAGAAGGTGC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
104 2 0.02
105 111 0.98
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (105 bp):
GTCCTGCTCTTTAAGGACAAAAGGGAAAAGAAGGAAAAGAAGTGCATCCTGCCCTTTGAGGACTA
AGAAGTGCCACTAACTTGTGTGGGCTTTGAAAGAGAAGGC
Found at i:78756 original size:62 final size:60
Alignment explanation
Indices: 78608--79628 Score: 811
Period size: 61 Copynumber: 16.9 Consensus size: 60
78598 ATGAAGTGCA
* * * *
78608 TCCTGCTCTTTGAGGACTAGGAGGTGCCACTAACTTGTGTGGGCTTT-GAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
*
78668 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGCG
1 TCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCG
* * * **
78730 TCCTACTCTTTGAGGACTAAAGGGTGCGACCAACTTGTGTGGGCTTCAAAAGGAAAAGTTG
1 TCCTGCTCTTTGAGGACTAAA-GGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
* ** * *
78791 TCCTGCTCTTTGAGGACTAAAAGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCA
1 TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCG
* * * *
78852 TCCTGCTCTTTTAGGACTGAAAGGTACCACCAACTTGTGTGGGCTTTAAGAGGAAAAGGCA
1 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
* * ** *
78913 TCTTGCTCTTTGAAGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAAAAAGACG
1 TCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCG
* * *
78975 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTAGGCTTTAGAAGGAAAAGGCA
1 TCCTGCTCTTTGAGGACT--AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
* ** * * *** * * * *
79036 TCTTGCTCTTTGAGGAAAAAAGG-G-GA--AA----AGAAAG---T-AATGGAATATGTCT
1 TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAA-AAGGCG
* * ** * *** * ** * * ** * *
79085 TGCT-CTTTGACGA-CAGGGAGGTGCCACCAGC--TTGTGTG-GGCTTTGAAAAGAAAAAGGCG
1 TCCTGCTCT-TTGAGGACTAAAG-G-TGCCACCAACT-TGTGTGGGCTTTAAAAGGAAAAGGCG
* * *
79144 TCCTGCTCTTTGAAGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGAAAAGGTG
1 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
* * * * * * **
79205 TCTTACTCTTTGAGGACTGGAGGGTGCCACCAACTTGTGTGGGCTTCGAAAAGAAAAAGATG
1 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTT-TAAAAGGAAAAGGCG
* * * * * * * *
79267 CCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGTATGGGCTTCAGAAGGAAAAAGTG
1 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
* * * * **
79328 TCCTGCTCTTTGAGGATTGAAATGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGATG
1 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCG
* * * *
79390 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAGAAGGAAAAAGCA
1 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
* * ** * * *
79451 TCCTGCTTTTTGAGGACTGAAATGTGCCACCAACTCATGTGGGCTTGAAAAGAAAAAGACG
1 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
* *
79512 TCCTGCTCTTTGAGGACTAAAGGGTGCCACCAAATTGTGTAGGCTTTAAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTAAA-GGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
* *
79573 TTCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGGAA
1 TCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAA
79629 GAGGATGCCA
Statistics
Matches: 760, Mismatches: 163, Indels: 74
0.76 0.16 0.07
Matches are distributed among these distances:
48 11 0.01
49 9 0.01
52 4 0.01
56 2 0.00
57 1 0.00
58 1 0.00
59 16 0.02
60 84 0.11
61 390 0.51
62 239 0.31
63 2 0.00
64 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (60 bp):
TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
Found at i:78991 original size:123 final size:122
Alignment explanation
Indices: 78608--79628 Score: 1001
Period size: 123 Copynumber: 8.5 Consensus size: 122
78598 ATGAAGTGCA
* * * *
78608 TCCTGCTCTTTGAGGACT-AGGAGGTGCCACTAACTTGTGTGGGCTTT-GAAGGAGAAGGCGTCC
1 TCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCC
78671 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGCG
65 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAGGCG
* * * **
78730 TCCTACTCTTTGAGGACT-AAAGGGTGCGACCAACTTGTGTGGGCTTCAAAAGGAAAAGTTGTCC
1 TCCTGCTCTTTGAGGACTGAAA-GGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCC
* ** *
78794 TGCTCTTTGAGGACTA-AAAGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCA
65 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAGGCG
* * * * *
78852 TCCTGCTCTTTTAGGACTGAAAGGTACCACCAACTTGTGTGGGCTTTAAGAGGAAAAGGCATCTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCT
* * *
78917 GCTCTTTGAAGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAAAAAGACG
66 GCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAGGCG
* * * *
78975 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTAGGCTTTAGAAGGAAAAGGCATCT
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCC
* * * * *** * * * *
79039 TGCTCTTTGAGGA-AAAAAGG-G-GA--AA----AGAAAG---T-AATGGAATA--TG
65 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCG
* * * ** * *
79082 TCTTGCTCTTTGACGACAGGGAGGTGCCACCAGCTTGTGTGGGCTTTGAAAAGAAAAAGGCGTCC
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCC
* * * * *
79147 TGCTCTTTGAAGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGAAAAGGTG
65 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCG
* * * * * * ** *
79205 TCTTACTCTTTGAGGACTGGAGGGTGCCACCAACTTGTGTGGGCTTCGAAAAGAAAAAGATGCCC
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTT-TAAAAGGAAAAGGCGTCC
* * * * * *
79270 TACTCTTTGAGGACTGGAAGGTGCCACCAACTTGTATGGGCTTCAGAAGGAAAAA-GTG
65 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTA-AAAGAAAAAGGCG
* * * * **
79328 TCCTGCTCTTTGAGGATTGAAATGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGATGTCC
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCC
* * *
79393 TGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAGAAGGAAAAA-GCA
65 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTA-AAAGAAAAAGGCG
* * ** * * *
79451 TCCTGCTTTTTGAGGACTGAAATGTGCCACCAACTCATGTGGGCTTGAAAAGAAAAAGACGTCCT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCT
* * *
79516 GCTCTTTGAGGACTA-AAGGGTGCCACCAAATTGTGTAGGCTTTAAAAGGAAAAGGCG
66 GCTCTTTGAGGACTAGAA-GGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCG
*
79573 TTCTGCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAAGGAA
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAA
79629 GAGGATGCCA
Statistics
Matches: 750, Mismatches: 120, Indels: 57
0.81 0.13 0.06
Matches are distributed among these distances:
106 2 0.00
107 38 0.05
108 25 0.03
109 11 0.01
110 1 0.00
111 2 0.00
113 2 0.00
114 2 0.00
117 2 0.00
118 2 0.00
120 2 0.00
121 17 0.02
122 241 0.32
123 393 0.52
124 10 0.01
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (122 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCT
GCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCG
Found at i:79200 original size:169 final size:169
Alignment explanation
Indices: 78913--79220 Score: 469
Period size: 169 Copynumber: 1.8 Consensus size: 169
78903 GGAAAAGGCA
78913 TCTTGCTCTTTGAAGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAAAAAGACGTCC
1 TCTTGCTCTTTGAAGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAAAAAGACGTCC
* * *
78978 TGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTAGGCTTTAGAAGGAAAAGGCATCTTGCT
66 TGCTCTTTGAAGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAGAAGGAAAAGGCATCTTACT
79043 CTTTGAGGAAAAAAGGGGAAAAGAAAGTAATGGAATATG
131 CTTTGAGGAAAAAAGGGGAAAAGAAAGTAATGGAATATG
* * * * *
79082 TCTTGCTCTTTGACGAC-AGGGAGGTGCCACCAGCTTGTGTGGGCTTTGAAAAGAAAAAGGCGTC
1 TCTTGCTCTTTGAAGACTA-GAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAAAAAGACGTC
* **
79146 CTGCTCTTTGAAGACT-AAAAGGTGCCACCAACTTGTGTGGGCTTTA-AGAGGAAAAGGTGTCTT
65 CTGCTCTTTGAAGACTGAAAA-GTGCCACCAACTTGTGTAGGCTTTAGA-AGGAAAAGGCATCTT
79209 ACTCTTTGAGGA
128 ACTCTTTGAGGA
79221 CTGGAGGGTG
Statistics
Matches: 125, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
168 5 0.04
169 120 0.96
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.26
Consensus pattern (169 bp):
TCTTGCTCTTTGAAGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAAAAAGACGTCC
TGCTCTTTGAAGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAGAAGGAAAAGGCATCTTACT
CTTTGAGGAAAAAAGGGGAAAAGAAAGTAATGGAATATG
Found at i:80314 original size:19 final size:19
Alignment explanation
Indices: 80267--80306 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
80257 TATTATCAGC
80267 TAAATGATGAATGCAAAGA
1 TAAATGATGAATGCAAAGA
80286 TAAATGATGAATGCAAAGA
1 TAAATGATGAATGCAAAGA
80305 TA
1 TA
80307 TTCTATGAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.53, C:0.05, G:0.20, T:0.23
Consensus pattern (19 bp):
TAAATGATGAATGCAAAGA
Found at i:80687 original size:17 final size:16
Alignment explanation
Indices: 80661--80692 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
80651 TCTCACCAAG
80661 GTTTTTTGTTTTTTTT
1 GTTTTTTGTTTTTTTT
80677 GTTTGTTTGTTTTTTT
1 GTTT-TTTGTTTTTTT
80693 AGAAGAGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (16 bp):
GTTTTTTGTTTTTTTT
Done.