Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold195
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1914327
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.29
Warning! 179916 characters in sequence are not A, C, G, or T
File 5 of 12
Found at i:619657 original size:20 final size:20
Alignment explanation
Indices: 619632--619671 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
619622 TTATTTGGAG
*
619632 CAAAAATGCCACAAAT-TATC
1 CAAAAAAGCCA-AAATGTATC
619652 CAAAAAAGCCAAAATGTATC
1 CAAAAAAGCCAAAATGTATC
619672 ATTACATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.53, C:0.23, G:0.07, T:0.17
Consensus pattern (20 bp):
CAAAAAAGCCAAAATGTATC
Found at i:623394 original size:52 final size:52
Alignment explanation
Indices: 623316--623444 Score: 233
Period size: 52 Copynumber: 2.5 Consensus size: 52
623306 CGAAATATGA
*
623316 AAATTTGCCTGCATGTATCGATACA-TTTACTAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTA-TAATGTATCGATACATCTGGGC
623368 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
623420 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
623445 AAGATCAGTG
Statistics
Matches: 75, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
52 71 0.95
53 4 0.05
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
Found at i:623457 original size:52 final size:52
Alignment explanation
Indices: 623316--623464 Score: 230
Period size: 52 Copynumber: 2.9 Consensus size: 52
623306 CGAAATATGA
623316 AAATTTGCCTGCATGTATCGATACATTTA-CTAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTATC-AGTGTATCGATACATCTGGGC
*
623368 AAATTTGCCTGCATGTATCGATACATTTTAT-AATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTTATCAGTGTATCGATACATCTGGGC
***
623420 AAATTTGCCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTTATCAGTGTATCGATACA
623465 ATGTATCGAT
Statistics
Matches: 89, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
51 2 0.02
52 83 0.93
53 4 0.04
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTATCAGTGTATCGATACATCTGGGC
Found at i:623471 original size:13 final size:13
Alignment explanation
Indices: 623453--623477 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
623443 CAAAGATCAG
623453 TGTATCGATACAA
1 TGTATCGATACAA
623466 TGTATCGATACA
1 TGTATCGATACA
623478 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:623555 original size:33 final size:33
Alignment explanation
Indices: 623518--623584 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
623508 AGTAGCTTAA
623518 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
623551 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
623584 A
1 A
623585 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:623558 original size:13 final size:13
Alignment explanation
Indices: 623540--623564 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
623530 CAAAAAAATA
623540 TGTATCGATACAT
1 TGTATCGATACAT
623553 TGTATCGATACA
1 TGTATCGATACA
623565 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:624872 original size:124 final size:125
Alignment explanation
Indices: 624646--624894 Score: 464
Period size: 124 Copynumber: 2.0 Consensus size: 125
624636 CTTATATGCG
624646 CCCCAGAGAGATAAGGAACATAGAGACATAAAAAGGACCTCCAGATTTTACTTTGAAAACTGGGT
1 CCCCAGAGAGATAAGGAACATAGAGACATAAAAAGGACCTCCAGATTTTACTTTGAAAACTGGGT
624711 ATTCCGTGTTAAACACTGGAGAGATACCGACACGGAACATTACCTTTATAATTTTTGTAA
66 ATTCCGTGTTAAACACTGGAGAGATACCGACACGGAACATTACCTTTATAATTTTTGTAA
* *
624771 CCCCGGAGAGATAAGGAACATAGAGACAT-AAAATGACCTCCAGATTTTACTTTGAAAACTGGGT
1 CCCCAGAGAGATAAGGAACATAGAGACATAAAAAGGACCTCCAGATTTTACTTTGAAAACTGGGT
*
624835 ATTCCGTGTTAAGCACTGGAGAGATACCGACACGGAACATTACCTTTATAATTTTTGTAA
66 ATTCCGTGTTAAACACTGGAGAGATACCGACACGGAACATTACCTTTATAATTTTTGTAA
624895 ACAAATTTTG
Statistics
Matches: 121, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
124 93 0.77
125 28 0.23
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (125 bp):
CCCCAGAGAGATAAGGAACATAGAGACATAAAAAGGACCTCCAGATTTTACTTTGAAAACTGGGT
ATTCCGTGTTAAACACTGGAGAGATACCGACACGGAACATTACCTTTATAATTTTTGTAA
Found at i:627043 original size:9 final size:10
Alignment explanation
Indices: 627005--627055 Score: 66
Period size: 11 Copynumber: 4.7 Consensus size: 10
626995 TTGTTTCCAT
627005 TTTTTTCTCTC
1 TTTTTT-TCTC
627016 TTTTCTTTCTCC
1 TTTT-TTTCT-C
627028 TTTTTTTCTC
1 TTTTTTTCTC
627038 TTTTTTTTCTC
1 -TTTTTTTCTC
627049 TTTTTTT
1 TTTTTTT
627056 AGTTGATTCC
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
10 8 0.22
11 22 0.59
12 7 0.19
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTTTTCTC
Found at i:627055 original size:22 final size:23
Alignment explanation
Indices: 627004--627055 Score: 81
Period size: 24 Copynumber: 2.3 Consensus size: 23
626994 TTTGTTTCCA
627004 TTTTTTTCTCTCTTTTCTTTCTCC
1 TTTTTTTCTCTCTTTTCTTTCT-C
627028 TTTTTTTCTCT-TTTT-TTTCTC
1 TTTTTTTCTCTCTTTTCTTTCTC
627049 TTTTTTT
1 TTTTTTT
627056 AGTTGATTCC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 8 0.29
22 5 0.18
23 4 0.14
24 11 0.39
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (23 bp):
TTTTTTTCTCTCTTTTCTTTCTC
Found at i:628577 original size:31 final size:31
Alignment explanation
Indices: 628504--628592 Score: 97
Period size: 31 Copynumber: 2.9 Consensus size: 31
628494 CTCGGACATA
*
628504 GGTGCCACCAACTTATGTGGGCTTTGACTCG
1 GGTGCCACCAACTTATGTGGGCTTTGACTAG
* ** * * * *
628535 AGCACCGCCAACTCATGCGGGCTTTGATTAG
1 GGTGCCACCAACTTATGTGGGCTTTGACTAG
*
628566 GGTGCCACCAACTTGTGTGGGCTTTGA
1 GGTGCCACCAACTTATGTGGGCTTTGA
628593 AAAGGGTTGC
Statistics
Matches: 43, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.18, C:0.26, G:0.29, T:0.27
Consensus pattern (31 bp):
GGTGCCACCAACTTATGTGGGCTTTGACTAG
Found at i:628599 original size:31 final size:32
Alignment explanation
Indices: 628553--628614 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 32
628543 CAACTCATGC
**
628553 GGGCTTTGATTAGGG-TGCCACCAACTTGTGT
1 GGGCTTTGAAAAGGGTTGCCACCAACTTGTGT
**
628584 GGGCTTTGAAAAGGGTTGCCACTGACTTGTG
1 GGGCTTTGAAAAGGGTTGCCACCAACTTGTG
628615 GGCTCCGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 13 0.50
32 13 0.50
ACGTcount: A:0.18, C:0.18, G:0.34, T:0.31
Consensus pattern (32 bp):
GGGCTTTGAAAAGGGTTGCCACCAACTTGTGT
Found at i:628661 original size:29 final size:27
Alignment explanation
Indices: 628581--629076 Score: 490
Period size: 28 Copynumber: 17.5 Consensus size: 27
628571 CACCAACTTG
628581 TGTGGGCTTTGAAAAGGGTTGCCACTGACT
1 TGTGGGCTTTG-AAA-GG-TGCCACTGACT
** *
628611 TGTGGGCTCCGAAAAGGTGCCATTGACT
1 TGTGGGCTTTG-AAAGGTGCCACTGACT
* * *
628639 TGTTGGCTTTTGAAAAGGTGCCATTGATT
1 TGTGGGC-TTTG-AAAGGTGCCACTGACT
* *
628668 TGTTGGCTTTTGAAAAGGTGCCATTGACT
1 TGTGGGC-TTTG-AAAGGTGCCACTGACT
* * * *
628697 TATTGCCTTTTGAAAAGGTGCCACTAACT
1 TGTGGGC-TTTG-AAAGGTGCCACTGACT
*
628726 TGTGGGCTTTTGAAATGTGCCACTGACT
1 TGTGGGC-TTTGAAAGGTGCCACTGACT
*
628754 TGTGGGCTTTGAAAGTTGCCACTGACT
1 TGTGGGCTTTGAAAGGTGCCACTGACT
* *
628781 TGTGGGCTTTGAAAGTTGCCACTAACT
1 TGTGGGCTTTGAAAGGTGCCACTGACT
* *
628808 TGTGGGCTTTGAAAAGATGCCATTGACT
1 TGTGGGCTTTG-AAAGGTGCCACTGACT
* *
628836 TGTGGGCTTTGAAAGGATGTCGCTGACT
1 TGTGGGCTTTGAAAGG-TGCCACTGACT
* *
628864 TATGGGCTTTGAAAGGATCCCA-TGGACT
1 TGTGGGCTTTGAAAGG-TGCCACT-GACT
* *
628892 TGTGGGCTTTTGAAAGAATGCCATTGACT
1 TGTGGGC-TTTGAAAG-GTGCCACTGACT
* *
628921 TGTGGGCTTTTGAAAGGATGCCATTGATT
1 TGTGGGC-TTTGAAAGG-TGCCACTGACT
628950 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGG-TGCCACTGACT
*
628978 TGTGAGCTTTTGAAAGGATGCCACTGACT
1 TGTGGGC-TTTGAAAGG-TGCCACTGACT
* *
629007 TGTGGGCTTTAAAAAGGTGCCACTGCCT
1 TGTGGGCTTT-GAAAGGTGCCACTGACT
* *
629035 TGTGGCCTTTGAAAGGATGCCATTGACT
1 TGTGGGCTTTGAAAGG-TGCCACTGACT
629063 TGTGGGCTTTGAAA
1 TGTGGGCTTTGAAA
629077 AAGGGTCATT
Statistics
Matches: 408, Mismatches: 47, Indels: 24
0.85 0.10 0.05
Matches are distributed among these distances:
27 65 0.16
28 166 0.41
29 163 0.40
30 14 0.03
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (27 bp):
TGTGGGCTTTGAAAGGTGCCACTGACT
Found at i:629080 original size:57 final size:56
Alignment explanation
Indices: 628581--629077 Score: 488
Period size: 57 Copynumber: 8.8 Consensus size: 56
628571 CACCAACTTG
* * * ** *
628581 TGTGGGCTTTGAAAAGGGTTGCCACTGACTTGTGGGCTCCGAAAAGGTGCCATTGACT
1 TGTGGCCTTTG-AAA-GGATGCCATTGACTTGTGGGCTTTGAAAAGGTGCCACTGACT
* * * *
628639 TGTTGGCTTTTGAAAAGG-TGCCATTGATTTGTTGGCTTTTGAAAAGGTGCCATTGACT
1 TG-TGGCCTTTG-AAAGGATGCCATTGACTTGTGGGC-TTTGAAAAGGTGCCACTGACT
* * * * *
628697 TATTGCCTTTTGAAAAGG-TGCCACTAACTTGTGGGCTTTTG-AAATGTGCCACTGACT
1 TGTGGCC-TTTG-AAAGGATGCCATTGACTTGTGGGC-TTTGAAAAGGTGCCACTGACT
* * * * *
628754 TGTGGGCTTTGAAA-GTTGCCACTGACTTGTGGGCTTTG-AAAGTTGCCACTAACT
1 TGTGGCCTTTGAAAGGATGCCATTGACTTGTGGGCTTTGAAAAGGTGCCACTGACT
* * * *
628808 TGTGGGCTTTGAAAAGATGCCATTGACTTGTGGGCTTTG-AAAGGATGTCGCTGACT
1 TGTGGCCTTTGAAAGGATGCCATTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACT
* * * * * *
628864 TATGGGCTTTGAAAGGATCCCATGGACTTGTGGGCTTTTG-AAAGAATGCCATTGACT
1 TGTGGCCTTTGAAAGGATGCCATTGACTTGTGGGC-TTTGAAAAG-GTGCCACTGACT
* *
628921 TGTGGGCTTTTGAAAGGATGCCATTGATTTGTGGGCTTTG-AAAGGATGCCACTGACT
1 TGT-GGCCTTTGAAAGGATGCCATTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACT
* * * *
628978 TGTGAGCTTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAAGGTGCCACTGCCT
1 TGTG-GCCTTTGAAAGGATGCCATTGACTTGTGGGCTTTGAAAAGGTGCCACTGACT
629035 TGTGGCCTTTGAAAGGATGCCATTGACTTGTGGGCTTTGAAAA
1 TGTGGCCTTTGAAAGGATGCCATTGACTTGTGGGCTTTGAAAA
629078 AGGGTCATTT
Statistics
Matches: 375, Mismatches: 52, Indels: 26
0.83 0.11 0.06
Matches are distributed among these distances:
54 32 0.09
55 46 0.12
56 80 0.21
57 121 0.32
58 85 0.23
59 11 0.03
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (56 bp):
TGTGGCCTTTGAAAGGATGCCATTGACTTGTGGGCTTTGAAAAGGTGCCACTGACT
Found at i:629086 original size:28 final size:28
Alignment explanation
Indices: 628581--629077 Score: 485
Period size: 29 Copynumber: 17.5 Consensus size: 28
628571 CACCAACTTG
628581 TGTGGGCTTTGAAAAGGGTTGCCACTGACT
1 TGTGGGCTTTGAAAA-GG-TGCCACTGACT
** *
628611 TGTGGGCTCCGAAAAGGTGCCATTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * *
628639 TGTTGGCTTTTGAAAAGGTGCCATTGATT
1 TGTGGGC-TTTGAAAAGGTGCCACTGACT
* *
628668 TGTTGGCTTTTGAAAAGGTGCCATTGACT
1 TGTGGGC-TTTGAAAAGGTGCCACTGACT
* * * *
628697 TATTGCCTTTTGAAAAGGTGCCACTAACT
1 TGTGGGC-TTTGAAAAGGTGCCACTGACT
*
628726 TGTGGGCTTTTG-AAATGTGCCACTGACT
1 TGTGGGC-TTTGAAAAGGTGCCACTGACT
*
628754 TGTGGGCTTTG-AAAGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
628781 TGTGGGCTTTG-AAAGTTGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
628808 TGTGGGCTTTGAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
628836 TGTGGGCTTTG-AAAGGATGTCGCTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
628864 TATGGGCTTTG-AAAGGATCCCA-TGGACT
1 TGTGGGCTTTGAAAAGG-TGCCACT-GACT
* *
628892 TGTGGGCTTTTG-AAAGAATGCCATTGACT
1 TGTGGGC-TTTGAAAAG-GTGCCACTGACT
* *
628921 TGTGGGCTTTTG-AAAGGATGCCATTGATT
1 TGTGGGC-TTTGAAAAGG-TGCCACTGACT
628950 TGTGGGCTTTG-AAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
*
628978 TGTGAGCTTTTG-AAAGGATGCCACTGACT
1 TGTGGGC-TTTGAAAAGG-TGCCACTGACT
* *
629007 TGTGGGCTTTAAAAAGGTGCCACTGCCT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
629035 TGTGGCCTTTG-AAAGGATGCCATTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
629063 TGTGGGCTTTGAAAA
1 TGTGGGCTTTGAAAA
629078 AGGGTCATTT
Statistics
Matches: 408, Mismatches: 47, Indels: 25
0.85 0.10 0.05
Matches are distributed among these distances:
27 65 0.16
28 163 0.40
29 166 0.41
30 14 0.03
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (28 bp):
TGTGGGCTTTGAAAAGGTGCCACTGACT
Found at i:634156 original size:30 final size:30
Alignment explanation
Indices: 634122--634209 Score: 131
Period size: 30 Copynumber: 2.9 Consensus size: 30
634112 TTAAATTTCA
*
634122 ATAATTTGTATCAATACAATGTATCGATAC
1 ATAATTTGTATCGATACAATGTATCGATAC
* *
634152 ATAATTTGTATTGATACAATGTATTGATAC
1 ATAATTTGTATCGATACAATGTATCGATAC
634182 ATAAGTTTTGTATCGATACAATGTATCG
1 ATAA--TTTGTATCGATACAATGTATCG
634210 CTACGAAGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
30 31 0.61
32 20 0.39
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (30 bp):
ATAATTTGTATCGATACAATGTATCGATAC
Found at i:634176 original size:13 final size:13
Alignment explanation
Indices: 634135--634182 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 13
634125 ATTTGTATCA
*
634135 ATACAATGTATCG
1 ATACAATGTATTG
634148 ATACATAATTTGTATTG
1 ATAC--AA--TGTATTG
634165 ATACAATGTATTG
1 ATACAATGTATTG
634178 ATACA
1 ATACA
634183 TAAGTTTTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
13 16 0.53
15 4 0.13
17 10 0.33
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (13 bp):
ATACAATGTATTG
Found at i:634252 original size:21 final size:21
Alignment explanation
Indices: 634226--634267 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
634216 AGCTACTGCC
634226 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
634247 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
634268 GTATCGATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.29
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:634272 original size:13 final size:13
Alignment explanation
Indices: 634254--634315 Score: 71
Period size: 13 Copynumber: 5.2 Consensus size: 13
634244 ATTAAGGAAA
634254 TGTATCGATACAT
1 TGTATCGATACAT
634267 TGTATCGATACA-
1 TGTATCGATACAT
**
634279 T-TAAGGA-A-A-
1 TGTATCGATACAT
634288 TGTATCGATACAT
1 TGTATCGATACAT
634301 TGTATCGATACAT
1 TGTATCGATACAT
634314 TG
1 TG
634316 ATCTTTGTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 2 0.05
10 5 0.12
11 5 0.12
12 2 0.05
13 27 0.66
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:634276 original size:34 final size:34
Alignment explanation
Indices: 634233--634314 Score: 164
Period size: 34 Copynumber: 2.4 Consensus size: 34
634223 GCCAAGGAAA
634233 TGTATCGATACATTAAGGAAATGTATCGATACAT
1 TGTATCGATACATTAAGGAAATGTATCGATACAT
634267 TGTATCGATACATTAAGGAAATGTATCGATACAT
1 TGTATCGATACATTAAGGAAATGTATCGATACAT
634301 TGTATCGATACATT
1 TGTATCGATACATT
634315 GATCTTTGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 48 1.00
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (34 bp):
TGTATCGATACATTAAGGAAATGTATCGATACAT
Found at i:636817 original size:78 final size:78
Alignment explanation
Indices: 636684--637091 Score: 536
Period size: 78 Copynumber: 5.2 Consensus size: 78
636674 TTTCATCTCG
* *
636684 GGGATACTCCAATCCC-GGTTTCATTTCCAAAACATTAATTTCTCATAATCGGGGATACTCCAAC
1 GGGATACTCCAA-CCCTGGTTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAAC
636748 CCCGTTATTTCCGA
65 CCCGTTATTTCCGA
* * *
636762 GGGATACTCCAACCCTGGTTTCATTTCCAAAACATTAATTTCTCATAATCAGGGATACTCCAACC
1 GGGATACTCCAACCCTGGTTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAACC
*
636827 CCGTTATTTTCGA
66 CCGTTATTTCCGA
* * * *
636840 GGGATACTCTAA-CCTCGGTTTTATTTCTGAAACATCAATTTTTCATAATCGGGGATACTCCAAC
1 GGGATACTCCAACCCT-GGTTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAAC
* * *
636904 CGCATTATTTACGA
65 CCCGTTATTTCCGA
* *
636918 GGGGACACTCCAACCCTGGTTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAAC
1 -GGGATACTCCAACCCTGGTTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAAC
*
636983 CTCGTTATTTCCGA
65 CCCGTTATTTCCGA
* * * *
636997 GGGGATACTCCAA-CCTCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGAGGATGCTCCAA
1 -GGGATACTCCAACCCT-GGTTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAA
637061 CCCCGTTATTTTCGCG-
64 CCCCGTTA-TTTC-CGA
*
637077 GGGATAGTCCAACCC
1 GGGATACTCCAACCC
637092 CATTATTTTT
Statistics
Matches: 293, Mismatches: 29, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
77 6 0.02
78 139 0.47
79 137 0.47
80 9 0.03
81 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (78 bp):
GGGATACTCCAACCCTGGTTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAACC
CCGTTATTTCCGA
Found at i:636969 original size:79 final size:79
Alignment explanation
Indices: 636683--637091 Score: 549
Period size: 79 Copynumber: 5.2 Consensus size: 79
636673 TTTTCATCTC
* *
636683 GGGGATACTCCAATCCC-GGTTTCATTTCCAAAACATTAATTTCTCATAATCGGGGATACTCCAA
1 GGGGATACTCCAA-CCCTGGTTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAA
636747 CCCCGTTATTTCCGA
65 CCCCGTTATTTCCGA
* * *
636762 -GGGATACTCCAACCCTGGTTTCATTTCCAAAACATTAATTTCTCATAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCTGGTTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAAC
*
636826 CCCGTTATTTTCGA
66 CCCGTTATTTCCGA
* * * *
636840 -GGGATACTCTAA-CCTCGGTTTTATTTCTGAAACATCAATTTTTCATAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCT-GGTTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAA
* * *
636903 CCGCATTATTTACGA
65 CCCCGTTATTTCCGA
* *
636918 GGGGACACTCCAACCCTGGTTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCTGGTTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAAC
*
636983 CTCGTTATTTCCGA
66 CCCGTTATTTCCGA
* * * *
636997 GGGGATACTCCAA-CCTCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGAGGATGCTCCAA
1 GGGGATACTCCAACCCT-GGTTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAA
* *
637061 CCCCGTTATTTTCGC
65 CCCCGTTATTTCCGA
*
637076 GGGGATAGTCCAACCC
1 GGGGATACTCCAACCC
637092 CATTATTTTT
Statistics
Matches: 293, Mismatches: 31, Indels: 11
0.87 0.09 0.03
Matches are distributed among these distances:
77 6 0.02
78 139 0.47
79 143 0.49
80 5 0.02
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (79 bp):
GGGGATACTCCAACCCTGGTTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAAC
CCCGTTATTTCCGA
Found at i:637090 original size:28 final size:28
Alignment explanation
Indices: 637050--637121 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
637040 TCATAATCGA
* **
637050 GGATGCTCCAACCCCGTTATTTTCGCGG
1 GGATACTCCAACCCCGTTATTTTCGAAG
* * *
637078 GGATAGTCCAACCCCATTATTTTTGAAG
1 GGATACTCCAACCCCGTTATTTTCGAAG
637106 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
637122 ATTTTATTTT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTATTTTCGAAG
Found at i:637099 original size:107 final size:107
Alignment explanation
Indices: 636968--637168 Score: 287
Period size: 107 Copynumber: 1.9 Consensus size: 107
636958 TTCTCATAAT
* * * * *
636968 CGGGGATACTCCAACCTCGTTATTTCCGAGGGGATACTCCAACCTCGGTTTTA-TTTCTAAAACA
1 CGGGGATACTCCAACCCCATTATTTCCGAAGGGATACTCCAACCCCGATTTTATTTTC-AAAACA
* *
637032 TCAATTTTTCATAATCGAGGATGCTCCAACCCCGTTATTTTCG
65 CCAATTTTTCATAATCGAGGATACTCCAACCCCGTTATTTTCG
* **
637075 CGGGGATAGTCCAACCCCATTATTTTTGAAGGGATACTCCAACCCCGATTTTATTTTCAAAACAC
1 CGGGGATACTCCAACCCCATTATTTCCGAAGGGATACTCCAACCCCGATTTTATTTTCAAAACAC
*
637140 CAATTTTTCATAATCGGGGATACTCCAAC
66 CAATTTTTCATAATCGAGGATACTCCAAC
637169 TCCGATTTTA
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
107 78 0.95
108 4 0.05
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (107 bp):
CGGGGATACTCCAACCCCATTATTTCCGAAGGGATACTCCAACCCCGATTTTATTTTCAAAACAC
CAATTTTTCATAATCGAGGATACTCCAACCCCGTTATTTTCG
Found at i:637159 original size:158 final size:159
Alignment explanation
Indices: 636997--637326 Score: 418
Period size: 158 Copynumber: 2.1 Consensus size: 159
636987 TTATTTCCGA
* * * * * *
636997 GGGGATACTCCAACCT-CGGTTTTATTTCTAAAACATCAATTTTTCATAATC-GAGGATGCTCCA
1 GGGGATACTCCAACCTCCGATTTTATTTCCAAAACACCAACTTTTCACAATCAG-GGATACTCCA
* * * * * *
637060 ACCCCGTTATTTTCGCGGGGATAGTCCAACCCCATTATTTTTGAAGGGATACTCCAACCCCGATT
65 ACCCCATTATTTCCGAGGGGACACTCCAACCCCATTATTTTCGAAGGGATACTCCAACCCCGATT
637125 TTATTT-TCAAAACACCAATTTTTCATAATC
130 TTATTTCT-AAAACACCAATTTTTCATAATC
* *
637155 GGGGATACTCCAA-CTCCGATTTTATTTCCAAAGCACCGACTTTTCACAATCAGGGATACTCCAA
1 GGGGATACTCCAACCTCCGATTTTATTTCCAAAACACCAACTTTTCACAATCAGGGATACTCCAA
* * *
637219 CCCCATTATTTCCGAGGGGACACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTT
66 CCCCATTATTTCCGAGGGGACACTCCAACCCCATTATTTTCGAAGGGATACTCCAACCCCGATTT
** *
637284 TATTTCTAAAACATTAATTTTTTATAATC
131 TATTTCTAAAACACCAATTTTTCATAATC
*
637313 -GGGATGCTCCAACC
1 GGGGATACTCCAACC
637327 CCGTTATTTT
Statistics
Matches: 147, Mismatches: 21, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
157 13 0.09
158 132 0.90
159 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (159 bp):
GGGGATACTCCAACCTCCGATTTTATTTCCAAAACACCAACTTTTCACAATCAGGGATACTCCAA
CCCCATTATTTCCGAGGGGACACTCCAACCCCATTATTTTCGAAGGGATACTCCAACCCCGATTT
TATTTCTAAAACACCAATTTTTCATAATC
Found at i:637279 original size:28 final size:28
Alignment explanation
Indices: 637207--637279 Score: 119
Period size: 28 Copynumber: 2.6 Consensus size: 28
637197 TTCACAATCA
*
637207 GGGATACTCCAACCCCATTATTTCCGAG
1 GGGATACTCCAACCCCGTTATTTCCGAG
* *
637235 GGGACACTCCAACCCCGTTATTTTCGAG
1 GGGATACTCCAACCCCGTTATTTCCGAG
637263 GGGATACTCCAACCCCG
1 GGGATACTCCAACCCCG
637280 GTTTTATTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.23, C:0.34, G:0.21, T:0.22
Consensus pattern (28 bp):
GGGATACTCCAACCCCGTTATTTCCGAG
Found at i:637313 original size:265 final size:265
Alignment explanation
Indices: 636969--637855 Score: 1535
Period size: 265 Copynumber: 3.4 Consensus size: 265
636959 TCTCATAATC
* * * *
636969 GGGGATACTCCAACCTCGTTATTTCCGAGGGGATACTCCAACCTCGGTTTTATTTCTAAAACATC
1 GGGGACACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATC
*
637034 AATTTTTCATAATCGAGGATGCTCCAACCCCGTTATTTTCGCGGGGATAGTCCAACCCCATTATT
66 AATTTTTCATAATCGGGGATGCTCCAACCCCGTTATTTTCGCGGGGATAGTCCAACCCCATTATT
637099 TTTGAAGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATACT
131 TTTGAAGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATACT
637164 CCAACTCCGATTTTATTTCCAAAGCACCGACTTTTCACAATCAGGGATACTCCAACCCCATTATT
196 CCAACTCCGATTTTATTTCCAAAGCACCGACTTTTCACAATCAGGGATACTCCAACCCCATTATT
637229 TCCGA
261 TCCGA
*
637234 GGGGACACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATT
1 GGGGACACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATC
*
637299 AATTTTTTATAATC-GGGATGCTCCAACCCCGTTATTTTCGCGGGGATAGTCCAACCCCATTATT
66 AATTTTTCATAATCGGGGATGCTCCAACCCCGTTATTTTCGCGGGGATAGTCCAACCCCATTATT
* *
637363 TTT-AAGGGGATACTCCAACCCTGATTTTATTTTCAAAACACCAATTTTCCATAATCGGGGATAC
131 TTTGAA-GGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATAC
* *
637427 TCCAACTCCGATTTTATTTCCAAAGCACCGACTATTCACAATCAGGGATACTCCAACACCATTAT
195 TCCAACTCCGATTTTATTTCCAAAGCACCGACTTTTCACAATCAGGGATACTCCAACCCCATTAT
637492 TTCCGA
260 TTCCGA
637498 GGGGACACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATC
1 GGGGACACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATC
* * *
637563 AATTTTTCATAATCGGGGATGCTCCAACCCCGTTATTTTTGCGGGGATACTGCAACCCCATTATT
66 AATTTTTCATAATCGGGGATGCTCCAACCCCGTTATTTTCGCGGGGATAGTCCAACCCCATTATT
* * *
637628 TTTGAGGGGATACTCCAACCCCGATTTTATTTTAAAAACACCAATTTTTCATAATCAGGGATACT
131 TTTGAAGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATACT
*
637693 CTAACTCCGATTTTATTTCCAAAGCACCGACTTTTCACAATCAGGGATACTCCAACCCCATTATT
196 CCAACTCCGATTTTATTTCCAAAGCACCGACTTTTCACAATCAGGGATACTCCAACCCCATTATT
*
637758 TTCGA
261 TCCGA
* * *
637763 AGGGACACTCCAACCCCATTATTTTCGAGGGGATACTACAACCCCGGTTTTATTTCTAAAACATC
1 GGGGACACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATC
* *
637828 AATTTTTCACAATCGGGGATACTCCAAC
66 AATTTTTCATAATCGGGGATGCTCCAAC
637856 TCCGATTTTA
Statistics
Matches: 589, Mismatches: 30, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
263 2 0.00
264 254 0.43
265 332 0.56
266 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (265 bp):
GGGGACACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATC
AATTTTTCATAATCGGGGATGCTCCAACCCCGTTATTTTCGCGGGGATAGTCCAACCCCATTATT
TTTGAAGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATACT
CCAACTCCGATTTTATTTCCAAAGCACCGACTTTTCACAATCAGGGATACTCCAACCCCATTATT
TCCGA
Found at i:637342 original size:27 final size:28
Alignment explanation
Indices: 637320--637383 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
637310 ATCGGGATGC
*
637320 TCCAACCCCGTTATTTTCGCGGGGATAG
1 TCCAACCCCATTATTTTCGCGGGGATAG
*** *
637348 TCCAACCCCATTATTTTTAAGGGGATAC
1 TCCAACCCCATTATTTTCGCGGGGATAG
637376 TCCAACCC
1 TCCAACCC
637384 TGATTTTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.28
Consensus pattern (28 bp):
TCCAACCCCATTATTTTCGCGGGGATAG
Found at i:637344 original size:106 final size:107
Alignment explanation
Indices: 637155--637432 Score: 335
Period size: 106 Copynumber: 2.6 Consensus size: 107
637145 TTTCATAATC
* * * * * *
637155 GGGGATACTCCAACTCCGATTTTATTTCCAAAGCACCGACTTTTCACAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTTCATAATCAGGGATACTCCAAC
* *
637220 CCCATTATTTCCGAGGGGACACTCCAACCCCGTTATTTTCGA
66 CCCATTATTTCCGAGGGGACACTCCAACCCCATTATTTTCAA
* ** * *
637262 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTTTTATAATC-GGGATGCTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTTCATAATCAGGGATACTCCAAC
* * * * * *
637326 CCCGTTATTTTCGCGGGGATAGTCCAACCCCATTATTTTTAA
66 CCCATTATTTCCGAGGGGACACTCCAACCCCATTATTTTCAA
* * *
637368 GGGGATACTCCAACCCTGATTTTATTT-TCAAAACACCAATTTTCCATAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGATTTTATTTCT-AAAACACCAATTTTTCATAATCAGGGATACTCCAA
637432 C
65 C
637433 TCCGATTTTA
Statistics
Matches: 143, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
105 1 0.01
106 89 0.62
107 53 0.37
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTTCATAATCAGGGATACTCCAAC
CCCATTATTTCCGAGGGGACACTCCAACCCCATTATTTTCAA
Found at i:637537 original size:107 final size:107
Alignment explanation
Indices: 637419--637693 Score: 352
Period size: 107 Copynumber: 2.6 Consensus size: 107
637409 TTCCATAATC
* * * * * * *
637419 GGGGATACTCCAACTCCGATTTTATTTCCAAAGCACCGACTATTCACAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCAAAAACACCAATTTTTCATAATCAGGGATACTCCAAC
*
637484 ACCATTATTTCCGAGGGGACACTCCAACCCCGTTATTTTCGA
66 ACCATTATTTCCGAGGGGACACTCCAACCCCATTATTTTCGA
* * * * *
637526 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATGCTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCAAAAACACCAATTTTTCATAATCAGGGATACTCCAAC
* * ** * * * *
637591 CCCGTTATTTTTGCGGGGATACTGCAACCCCATTATTTTTGA
66 ACCATTATTTCCGAGGGGACACTCCAACCCCATTATTTTCGA
*
637633 GGGGATACTCCAACCCCGATTTTATTTTAAAAACACCAATTTTTCATAATCAGGGATACTC
1 GGGGATACTCCAACCCCGATTTTATTTCAAAAACACCAATTTTTCATAATCAGGGATACTC
637694 TAACTCCGAT
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
107 142 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGATTTTATTTCAAAAACACCAATTTTTCATAATCAGGGATACTCCAAC
ACCATTATTTCCGAGGGGACACTCCAACCCCATTATTTTCGA
Found at i:637540 original size:28 final size:28
Alignment explanation
Indices: 637471--637543 Score: 110
Period size: 28 Copynumber: 2.6 Consensus size: 28
637461 TTCACAATCA
* *
637471 GGGATACTCCAACACCATTATTTCCGAG
1 GGGATACTCCAACCCCGTTATTTCCGAG
* *
637499 GGGACACTCCAACCCCGTTATTTTCGAG
1 GGGATACTCCAACCCCGTTATTTCCGAG
637527 GGGATACTCCAACCCCG
1 GGGATACTCCAACCCCG
637544 GTTTTATTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.25, C:0.33, G:0.21, T:0.22
Consensus pattern (28 bp):
GGGATACTCCAACCCCGTTATTTCCGAG
Found at i:637618 original size:28 final size:28
Alignment explanation
Indices: 637576--637650 Score: 114
Period size: 28 Copynumber: 2.7 Consensus size: 28
637566 TTTTCATAAT
*
637576 CGGGGATGCTCCAACCCCGTTATTTTTG
1 CGGGGATACTCCAACCCCGTTATTTTTG
* *
637604 CGGGGATACTGCAACCCCATTATTTTTG
1 CGGGGATACTCCAACCCCGTTATTTTTG
*
637632 AGGGGATACTCCAACCCCG
1 CGGGGATACTCCAACCCCG
637651 ATTTTATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (28 bp):
CGGGGATACTCCAACCCCGTTATTTTTG
Found at i:637689 original size:158 final size:158
Alignment explanation
Indices: 637527--637936 Score: 570
Period size: 158 Copynumber: 2.6 Consensus size: 158
637517 TATTTTCGAG
* * * * * *
637527 GGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATGCTCCAACC
1 GGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACC
* * * *
637592 CCGTTATTTTTGCGGGGATACTGCAACCCCATTATTTTTGAGGGGATACTCCAACCCCGATTTTA
66 CCGTTATTTTCGCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTACAACCCCGATTTTA
*
637657 TTT-TAAAAACACCAATTTTTCATAATCA
131 TTTCT-AAAACACCAATTTTTCACAATCA
* * * * *
637685 GGGATACTCTAACTCCGATTTTATTTCCAAAGCACCGACTTTTCACAATCAGGGATACTCCAACC
1 GGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACC
* ** * *
637750 CCATTATTTTCGAAGGGACACTCCAACCCCATTATTTTCGAGGGGATACTACAACCCCGGTTTTA
66 CCGTTATTTTCGCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTACAACCCCGATTTTA
* *
637815 TTTCTAAAACATCAATTTTTCACAATCG
131 TTTCTAAAACACCAATTTTTCACAATCA
* *
637843 GGGATACTCCAACTCCGATTTTAGTTCCAAAACACCAATTTCTCACAATCGGGGATACTCCAACC
1 GGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACC
*
637908 CCGTTATTTTCACGGGGATACTCCAACCC
66 CCGTTATTTTCGCGGGGATACTCCAACCC
637937 TGGCCTTATT
Statistics
Matches: 216, Mismatches: 35, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
158 215 1.00
159 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (158 bp):
GGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACC
CCGTTATTTTCGCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTACAACCCCGATTTTA
TTTCTAAAACACCAATTTTTCACAATCA
Found at i:637775 original size:28 final size:28
Alignment explanation
Indices: 637735--637807 Score: 119
Period size: 28 Copynumber: 2.6 Consensus size: 28
637725 TTTCACAATC
637735 AGGGATACTCCAACCCCATTATTTTCGA
1 AGGGATACTCCAACCCCATTATTTTCGA
*
637763 AGGGACACTCCAACCCCATTATTTTCGA
1 AGGGATACTCCAACCCCATTATTTTCGA
* *
637791 GGGGATACTACAACCCC
1 AGGGATACTCCAACCCC
637808 GGTTTTATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.23
Consensus pattern (28 bp):
AGGGATACTCCAACCCCATTATTTTCGA
Found at i:650493 original size:12 final size:11
Alignment explanation
Indices: 650442--650506 Score: 51
Period size: 11 Copynumber: 5.7 Consensus size: 11
650432 GTTCTTTTAC
*
650442 AAAAAAAAAAC
1 AAAAAAAAAAG
*
650453 AAAAAAAAGAGG
1 AAAAAAAA-AAG
650465 CAAAAAAAAAA-
1 -AAAAAAAAAAG
* *
650476 ACAAAACAAAG
1 AAAAAAAAAAG
*
650487 AAAAAAAGAGAG
1 AAAAAAA-AAAG
650499 AAAAAAAA
1 AAAAAAAA
650507 GAACCTGCTT
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
10 8 0.19
11 14 0.33
12 12 0.29
13 8 0.19
ACGTcount: A:0.83, C:0.06, G:0.11, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:651645 original size:61 final size:61
Alignment explanation
Indices: 651466--652194 Score: 635
Period size: 61 Copynumber: 12.4 Consensus size: 61
651456 CTCCTTCCAC
* ** *
651466 TTTT-CAGTCCTCAAAGAGCAGGACACCTTTTCCTTTCAATGCCCACACAAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCA
** * *
651526 CCTTCCAGTCCTCAAAAAGCAGGA------CGCCTTTCAAAGCCTACACAAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
651581 TTTTCTAGTCCTCAAAGAGCAGGACGCCTTCGCCTTTTAAAGCCCACACGAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCA
**
651642 TTTTCCAGTCCTCAAAGAGCAGGA------CGCCTTTCAAAGCCCACACGGGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCA
** * *
651697 CCTTCCAGTCCTCAAAGAGCAGGA------CGACTTTCGAAGCCCACACAAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * **
651752 TTTTCTAGTCCTCAAAGAGTAGGATGCCTTCGCCTTTCAAAGCCCACATGAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
651813 TTTTTCAGTCCTCAAAGAGCAGGAC-AC-T----TTTCAAAGCCCACACGAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * * *
651868 TTTTCCAGGCCTCAAAAAGCAGGATGCTTTC-TCTTTGGAAAGCCCACACAAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTCGCCTTT-CAAAGCCCACACAAGTTGGTGGCA
* * * * **
651929 CTTTT-TAGTCCTCAAAGAGCAAGATGCTTTC-TTTTTGCAAAGCCCACACAAGTTGGTGGCA
1 -TTTTCCAGTCCTCAAAGAGCAGGACGCCTTCGCCTTT-CAAAGCCCACACAAGTTGGTGGCA
* * ** * *
651990 TCTTCCAGTCCTCAAAGGGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * **
652051 CTTTT-TAGTCTTCAAAGAGCAGGATGCTTTC-TTTTTGCAAAGCCCACACAAGTTGGTGGCA
1 -TTTTCCAGTCCTCAAAGAGCAGGACGCCTTCGCCTTT-CAAAGCCCACACAAGTTGGTGGCA
* * * ** * * *
652112 TCTTCC---CCTCAAAGGGCAGGACGTCTTTTCTTTTCAAAGCCCATACGAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
652170 CTTTT-CAGTCTTCAAAGAGCGGGAC
1 -TTTTCCAGTCCTCAAAGAGCAGGAC
652195 ACACTTCCTT
Statistics
Matches: 555, Mismatches: 84, Indels: 59
0.80 0.12 0.08
Matches are distributed among these distances:
55 192 0.35
57 1 0.00
58 39 0.07
59 8 0.01
60 16 0.03
61 288 0.52
62 11 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (61 bp):
TTTTCCAGTCCTCAAAGAGCAGGACGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:651675 original size:116 final size:116
Alignment explanation
Indices: 651463--652194 Score: 689
Period size: 116 Copynumber: 6.2 Consensus size: 116
651453 CTTCTCCTTC
* * * *
651463 CACTTTTC-AGTCCTCAAAGAGCAGGACACCTTTTCCTTTCAATGCCCACACAAGTTGGTGGCAC
1 CACTTTTCTAGTCCTCAAAGAGCAGGACGCC-TTT-CTTTTAAAGCCCACACAAGTTGGTGGCAT
* * *
651527 CTTCCAGTCCTCAAAAAGCAGGACGC-CTTTCAAAGCCTACACAAGTTGGTGG
64 CTTCCAGTCCTCAAAGAGCAGGACGCTCTTTCAAAGCCCACACGAGTTGGTGG
* *
651579 CA-TTTTCTAGTCCTCAAAGAGCAGGACGCCTTCGCCTTTTAAAGCCCACACGAGTTGGTGGCAT
1 CACTTTTCTAGTCCTCAAAGAGCAGGACGCCTT--TCTTTTAAAGCCCACACAAGTTGGTGGCAT
* *
651643 TTTCCAGTCCTCAAAGAGCAGGACGC-CTTTCAAAGCCCACACGGGTTGGTGG
64 CTTCCAGTCCTCAAAGAGCAGGACGCTCTTTCAAAGCCCACACGAGTTGGTGG
* * * * *
651695 CAC-CTTCCAGTCCTCAAAGAGCAGGACGACTTTC----GAAGCCCACACAAGTTGGTGGCATTT
1 CACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTCTTTTAAAGCCCACACAAGTTGGTGGCATCT
* * * *
651755 TCTAGTCCTCAAAGAGTAGGATGCCTTCGCCTTTCAAAGCCCACATGAGTTGGTGG
66 TCCAGTCCTCAAAGAGCAGGACG-C-T---CTTTCAAAGCCCACACGAGTTGGTGG
* * * * *
651811 CATTTTTC-AGTCCTCAAAGAGCAGGAC-AC--T-TTTCAAAGCCCACACGAGTTGGTGGCATTT
1 CACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTCTTTTAAAGCCCACACAAGTTGGTGGCATCT
* * * * *
651871 TCCAGGCCTCAAAAAGCAGGATGCTTTCTCTTTGGAAAGCCCACACAAGTTGGTGG
66 TCCAGTCCTCAAAGAGCAGGA--C--GCTCTTT-CAAAGCCCACACGAGTTGGTGG
* *
651927 CACTTTT-TAGTCCTCAAAGAGCAAGATG-CTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCA
1 CACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTC-TTTT--AAAGCCCACACAAGTTGGTGGCA
*
651990 TCTTCCAGTCCTCAAAGGGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGG
63 TCTTCCAGTCCTCAAAGAGCAGGACG-C---TC-TTTCAAAGCCCACACGAGTTGGTGG
* *
652049 CACTTTT-TAGTCTTCAAAGAGCAGGATG-CTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCA
1 CACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTC-TTTT--AAAGCCCACACAAGTTGGTGGCA
* *
652112 TCTTCC---CCTCAAAGGGCAGGACGTCTTTTCTTTTCAAAGCCCATACGAGTTGGTGG
63 TCTTCCAGTCCTCAAAGAGCAGGACG-C---TC-TTTCAAAGCCCACACGAGTTGGTGG
* *
652168 CACTTTTC-AGTCTTCAAAGAGCGGGAC
1 CACTTTTCTAGTCCTCAAAGAGCAGGAC
652195 ACACTTCCTT
Statistics
Matches: 529, Mismatches: 53, Indels: 65
0.82 0.08 0.10
Matches are distributed among these distances:
110 44 0.08
111 1 0.00
113 1 0.00
114 1 0.00
115 13 0.02
116 252 0.48
117 3 0.01
118 2 0.00
119 74 0.14
120 4 0.01
122 131 0.25
123 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (116 bp):
CACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTCTTTTAAAGCCCACACAAGTTGGTGGCATCT
TCCAGTCCTCAAAGAGCAGGACGCTCTTTCAAAGCCCACACGAGTTGGTGG
Found at i:652302 original size:42 final size:44
Alignment explanation
Indices: 652210--652324 Score: 123
Period size: 42 Copynumber: 2.7 Consensus size: 44
652200 TCCTTCCCCT
* *
652210 CTTTTCTCTTTTGTCCTCAAAGAGCAAGATGCACTTTATTTTCCA
1 CTTTT-TCTTTTGTCCTCAAAGAGCAAGACGCACTTTAGTTTCCA
* * *
652255 C--TTTCTTTTGTCCTCAAAGAGCAGGACGTA-TTTCGTTTCC-
1 CTTTTTCTTTTGTCCTCAAAGAGCAAGACGCACTTTAGTTTCCA
*
652295 CTTTTTCTTTTGTCCTCGAAA-AACAAGACG
1 CTTTTTCTTTTGTCCTC-AAAGAGCAAGACG
652325 TACTCTTTTT
Statistics
Matches: 60, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
40 1 0.02
41 8 0.13
42 45 0.75
43 5 0.08
45 1 0.02
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (44 bp):
CTTTTTCTTTTGTCCTCAAAGAGCAAGACGCACTTTAGTTTCCA
Found at i:653092 original size:30 final size:30
Alignment explanation
Indices: 653056--653143 Score: 140
Period size: 30 Copynumber: 2.9 Consensus size: 30
653046 TTAAATTTCA
*
653056 ATAATTTGTATTGATACAATGTATCGATAC
1 ATAATTTGTATCGATACAATGTATCGATAC
*
653086 ATAATTTGTATCGATACAATGTATCAATAC
1 ATAATTTGTATCGATACAATGTATCGATAC
653116 ATAAGTTTTGTATCGATACAATGTATCG
1 ATAA--TTTGTATCGATACAATGTATCG
653144 CTACGAAGCT
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
30 32 0.60
32 21 0.40
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (30 bp):
ATAATTTGTATCGATACAATGTATCGATAC
Found at i:653097 original size:17 final size:17
Alignment explanation
Indices: 653056--653135 Score: 68
Period size: 13 Copynumber: 5.1 Consensus size: 17
653046 TTAAATTTCA
*
653056 ATAATTTGTATTGATAC
1 ATAATTTGTATCGATAC
653073 --AA--TGTATCGATAC
1 ATAATTTGTATCGATAC
653086 ATAATTTGTATCGATAC
1 ATAATTTGTATCGATAC
*
653103 --AA--TGTATCAATAC
1 ATAATTTGTATCGATAC
653116 ATAAGTTTTGTATCGATAC
1 ATAA--TTTGTATCGATAC
653135 A
1 A
653136 ATGTATCGCT
Statistics
Matches: 50, Mismatches: 3, Indels: 18
0.70 0.04 0.25
Matches are distributed among these distances:
13 20 0.40
15 8 0.16
17 11 0.22
19 11 0.22
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (17 bp):
ATAATTTGTATCGATAC
Found at i:653186 original size:21 final size:21
Alignment explanation
Indices: 653160--653201 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
653150 AGCTACTGTC
653160 AAGGAAATGTACCGATACATT
1 AAGGAAATGTACCGATACATT
*
653181 AAGGAAATGTATCGATACATT
1 AAGGAAATGTACCGATACATT
653202 CAGGCATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.12, G:0.19, T:0.26
Consensus pattern (21 bp):
AAGGAAATGTACCGATACATT
Found at i:656091 original size:52 final size:52
Alignment explanation
Indices: 656013--656130 Score: 191
Period size: 52 Copynumber: 2.3 Consensus size: 52
656003 AATTTATCTA
* * * *
656013 CATGTATTGATACATTTAATAGTGTATCGATACATCTGGGCAACTTTGCTTG
1 CATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTG
*
656065 CATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCCTG
1 CATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTG
656117 CATGTATCGATACA
1 CATGTATCGATACA
656131 AAGATCGGTG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 61 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (52 bp):
CATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTG
Found at i:656143 original size:52 final size:52
Alignment explanation
Indices: 656013--656150 Score: 163
Period size: 52 Copynumber: 2.7 Consensus size: 52
656003 AATTTATCTA
* * * *
656013 CATGTATTGATACATTTA-ATAGTGTATCGATACATCTGGGCAACTTTGCTTG
1 CATGTATCGATACA-TAAGATAGTGTATCGATACATCTGGGCAAATTTGCCTG
*** *
656065 CATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCCTG
1 CATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGCCTG
*
656117 CATGTATCGATACA-AAGATCGGTGTATCGATACA
1 CATGTATCGATACATAAGAT-AGTGTATCGATACA
656151 ATGTATCGAT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
51 4 0.05
52 70 0.95
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (52 bp):
CATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGCCTG
Found at i:656157 original size:13 final size:13
Alignment explanation
Indices: 656139--656163 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
656129 CAAAGATCGG
656139 TGTATCGATACAA
1 TGTATCGATACAA
656152 TGTATCGATACA
1 TGTATCGATACA
656164 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:656245 original size:13 final size:13
Alignment explanation
Indices: 656227--656251 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
656217 CAAAAAAATA
656227 TGTATCGATACAT
1 TGTATCGATACAT
656240 TGTATCGATACA
1 TGTATCGATACA
656252 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:656246 original size:33 final size:33
Alignment explanation
Indices: 656205--656271 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
656195 AGTAGCTTAA
656205 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
656238 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
656271 A
1 A
656272 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:656496 original size:23 final size:23
Alignment explanation
Indices: 656466--656510 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
656456 CATTTTATTA
*
656466 TCCCCACATAGGTCGAATCCTCG
1 TCCCCACATAAGTCGAATCCTCG
656489 TCCCCACATAAGTCGAATCCTC
1 TCCCCACATAAGTCGAATCCTC
656511 CACCTACTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.24, C:0.40, G:0.13, T:0.22
Consensus pattern (23 bp):
TCCCCACATAAGTCGAATCCTCG
Found at i:660476 original size:13 final size:13
Alignment explanation
Indices: 660454--660489 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
660444 TTTTTCTTTA
*
660454 TATCGATACATTG
1 TATCGATACACTG
*
660467 TATTGATACACTG
1 TATCGATACACTG
660480 TATCGATACA
1 TATCGATACA
660490 GGGGGATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (13 bp):
TATCGATACACTG
Found at i:664280 original size:52 final size:51
Alignment explanation
Indices: 664202--664350 Score: 217
Period size: 52 Copynumber: 2.9 Consensus size: 51
664192 CGAAATATGA
664202 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTG-ATAGTGTATCGATACATCTGGGC
* *
664254 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTGATAGTGTATCGATACATCTGGGC
* * **
664306 AAATTTTCCTTCATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAT-AGTGTATCGATACA
664351 ATGTATCGAT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 2 0.02
52 83 0.95
53 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTGATAGTGTATCGATACATCTGGGC
Found at i:664357 original size:13 final size:13
Alignment explanation
Indices: 664339--664363 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
664329 CAAAGATCAG
664339 TGTATCGATACAA
1 TGTATCGATACAA
664352 TGTATCGATACA
1 TGTATCGATACA
664364 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:664441 original size:33 final size:33
Alignment explanation
Indices: 664404--664470 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
664394 AGTAGCTTAA
664404 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
664437 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
664470 A
1 A
664471 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:664444 original size:13 final size:13
Alignment explanation
Indices: 664426--664450 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
664416 CAAAAAAATA
664426 TGTATCGATACAT
1 TGTATCGATACAT
664439 TGTATCGATACA
1 TGTATCGATACA
664451 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:664695 original size:23 final size:23
Alignment explanation
Indices: 664665--664708 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
664655 CATTTTATTA
*
664665 TCCCCACATAGGTCGAATCCTCG
1 TCCCCACATAAGTCGAATCCTCG
*
664688 TCCCCACATAAGTCGACTCCT
1 TCCCCACATAAGTCGAATCCT
664709 TCACCTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.41, G:0.14, T:0.23
Consensus pattern (23 bp):
TCCCCACATAAGTCGAATCCTCG
Found at i:665409 original size:52 final size:52
Alignment explanation
Indices: 665293--665488 Score: 194
Period size: 52 Copynumber: 3.9 Consensus size: 52
665283 GCCAATATTT
* * * * * * *
665293 TGATTCACGGCCAACGATATTGGGCTTAAAGCTGAGAAAAAGGATGTCAATGTGC
1 TGATTCAAGGCCAGCTACATTGGACTTAAAGATG-G-AAAAGG-TGCCAATGTGC
* *
665348 TGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGC
1 TGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATGTGC
*
665400 TGATTCAAGGCCAGCTATATTGGAC-T-----T---AAAGGTGCCAATGTGC
1 TGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATGTGC
* *
665443 TGATTCAAGGTCAGCTACATTGGACTTAAAGATGGAAAATGTGCCA
1 TGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCA
665489 CCGACTTGTG
Statistics
Matches: 117, Mismatches: 15, Indels: 21
0.76 0.10 0.14
Matches are distributed among these distances:
43 38 0.32
44 1 0.01
46 1 0.01
49 1 0.01
51 1 0.01
52 41 0.35
53 6 0.05
54 1 0.01
55 27 0.23
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (52 bp):
TGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATGTGC
Found at i:665445 original size:43 final size:43
Alignment explanation
Indices: 665384--665473 Score: 153
Period size: 43 Copynumber: 2.1 Consensus size: 43
665374 TAAAGATGGA
*
665384 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
* *
665427 AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
665470 AAAG
1 AAAG
665474 ATGGAAAATG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
Found at i:665620 original size:30 final size:29
Alignment explanation
Indices: 665484--665623 Score: 169
Period size: 30 Copynumber: 4.9 Consensus size: 29
665474 ATGGAAAATG
* ** *
665484 TGCCACCGACTTGTGGGCTTCGGAAAAGGG
1 TGCCACTGACTTGTGGGCTTTTGAAAA-GT
* *
665514 TGCCACTGATTTGTGGGC-TTTG-AAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
*
665541 TGCCACTGACTTGTGGGCTTTT-AAAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
*
665569 TGCCACTGACTTGTGGGCTTTTGAAAAAT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
665598 ATGCCACTGACTTGTGGGCTTTTGAA
1 -TGCCACTGACTTGTGGGCTTTTGAA
665624 GGGTGATAAA
Statistics
Matches: 97, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
27 18 0.19
28 32 0.33
29 6 0.06
30 41 0.42
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.32
Consensus pattern (29 bp):
TGCCACTGACTTGTGGGCTTTTGAAAAGT
Found at i:667095 original size:23 final size:23
Alignment explanation
Indices: 667065--667108 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
667055 CATTTTATTA
*
667065 TCCCCACATAGGTCGAATCCTCG
1 TCCCCACATAAGTCGAATCCTCG
*
667088 TCCCCACATAAGTCGACTCCT
1 TCCCCACATAAGTCGAATCCT
667109 TCACCTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.41, G:0.14, T:0.23
Consensus pattern (23 bp):
TCCCCACATAAGTCGAATCCTCG
Found at i:667809 original size:52 final size:52
Alignment explanation
Indices: 667677--667888 Score: 190
Period size: 52 Copynumber: 4.2 Consensus size: 52
667667 GAAAAGTGAT
* * * * * * * *
667677 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGCTGAGAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-G-A
* * *
667731 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
* *
667784 AAAGGTGCTAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
* *
667827 AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAAGATGGA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
*
667879 AAATGTGCCA
1 AAAGGTGCCA
667889 CCGACTTGTG
Statistics
Matches: 127, Mismatches: 21, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
43 37 0.29
44 1 0.01
46 1 0.01
49 1 0.01
51 1 0.01
52 40 0.31
53 6 0.05
54 5 0.04
55 35 0.28
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
Found at i:667832 original size:43 final size:43
Alignment explanation
Indices: 667784--667873 Score: 144
Period size: 43 Copynumber: 2.1 Consensus size: 43
667774 TAAAGATGGA
* *
667784 AAAGGTGCTAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
* *
667827 AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
667870 AAAG
1 AAAG
667874 ATGGAAAATG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
Found at i:668020 original size:30 final size:29
Alignment explanation
Indices: 667884--668023 Score: 160
Period size: 30 Copynumber: 4.9 Consensus size: 29
667874 ATGGAAAATG
* ** *
667884 TGCCACCGACTTGTGGGCTTCGGAAAAGGG
1 TGCCACTGACTTGTGGGCTTTTGAAAA-GT
* * *
667914 TGCCACTGATTTTTGGGC-TTTG-AAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
*
667941 TGCCACTGACTTGTGGGCTTTT-AAAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
*
667969 TGCCACTGACTTGTGGGCTTTTGAAAAAT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
667998 ATGCCACTGACTTGTGGGCTTTTGAA
1 -TGCCACTGACTTGTGGGCTTTTGAA
668024 GGGTGATAAA
Statistics
Matches: 95, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
27 17 0.18
28 32 0.34
29 6 0.06
30 40 0.42
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.33
Consensus pattern (29 bp):
TGCCACTGACTTGTGGGCTTTTGAAAAGT
Found at i:669495 original size:23 final size:23
Alignment explanation
Indices: 669465--669508 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
669455 CATTTTATTA
*
669465 TCCCCACATAGGTCGAATCCTCG
1 TCCCCACATAAGTCGAATCCTCG
*
669488 TCCCCACATAAGTCGACTCCT
1 TCCCCACATAAGTCGAATCCT
669509 TCACCTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.41, G:0.14, T:0.23
Consensus pattern (23 bp):
TCCCCACATAAGTCGAATCCTCG
Found at i:670209 original size:52 final size:52
Alignment explanation
Indices: 670077--670288 Score: 199
Period size: 52 Copynumber: 4.2 Consensus size: 52
670067 GAAAAGTGAT
* * * * * * * *
670077 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGCTGAGAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-G-A
* * *
670131 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
*
670184 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
* *
670227 AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAAGATGGA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
*
670279 AAATGTGCCA
1 AAAGGTGCCA
670289 CCGACTTGTG
Statistics
Matches: 129, Mismatches: 19, Indels: 22
0.76 0.11 0.13
Matches are distributed among these distances:
43 38 0.29
44 1 0.01
46 1 0.01
49 1 0.01
51 1 0.01
52 41 0.32
53 6 0.05
54 5 0.04
55 35 0.27
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
Found at i:670245 original size:43 final size:43
Alignment explanation
Indices: 670184--670273 Score: 153
Period size: 43 Copynumber: 2.1 Consensus size: 43
670174 TAAAGATGGA
*
670184 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
* *
670227 AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
670270 AAAG
1 AAAG
670274 ATGGAAAATG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
Found at i:670420 original size:30 final size:29
Alignment explanation
Indices: 670284--670423 Score: 169
Period size: 30 Copynumber: 4.9 Consensus size: 29
670274 ATGGAAAATG
* ** *
670284 TGCCACCGACTTGTGGGCTTCGGAAAAGGG
1 TGCCACTGACTTGTGGGCTTTTGAAAA-GT
* *
670314 TGCCACTGATTTGTGGGC-TTTG-AAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
*
670341 TGCCACTGACTTGTGGGCTTTT-AAAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
*
670369 TGCCACTGACTTGTGGGCTTTTGAAAAAT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
670398 ATGCCACTGACTTGTGGGCTTTTGAA
1 -TGCCACTGACTTGTGGGCTTTTGAA
670424 GGGTGATAAA
Statistics
Matches: 97, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
27 18 0.19
28 32 0.33
29 6 0.06
30 41 0.42
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.32
Consensus pattern (29 bp):
TGCCACTGACTTGTGGGCTTTTGAAAAGT
Found at i:671895 original size:23 final size:23
Alignment explanation
Indices: 671865--671908 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
671855 CATTTTATTA
*
671865 TCCCCACATAGGTCGAATCCTCG
1 TCCCCACATAAGTCGAATCCTCG
*
671888 TCCCCACATAAGTCGACTCCT
1 TCCCCACATAAGTCGAATCCT
671909 TCACCTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.41, G:0.14, T:0.23
Consensus pattern (23 bp):
TCCCCACATAAGTCGAATCCTCG
Found at i:672609 original size:52 final size:52
Alignment explanation
Indices: 672477--672688 Score: 190
Period size: 52 Copynumber: 4.2 Consensus size: 52
672467 GAAAAGTGAT
* * * * * * * *
672477 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGCTGAGAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-G-A
* * *
672531 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
*
672584 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
* * *
672627 AAAGGTGCCAATGTGTTGATTCAAGGTCAGCTACATTGGACTTAAAGATGGA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
*
672679 AAATGTGCCA
1 AAAGGTGCCA
672689 CCGACTTGTG
Statistics
Matches: 128, Mismatches: 20, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
43 37 0.29
44 1 0.01
46 1 0.01
49 1 0.01
51 1 0.01
52 41 0.32
53 6 0.05
54 5 0.04
55 35 0.27
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
Found at i:672647 original size:43 final size:43
Alignment explanation
Indices: 672584--672673 Score: 144
Period size: 43 Copynumber: 2.1 Consensus size: 43
672574 TAAAGATGGA
*
672584 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
* * *
672627 AAAGGTGCCAATGTGTTGATTCAAGGTCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
672670 AAAG
1 AAAG
672674 ATGGAAAATG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
Found at i:672820 original size:30 final size:29
Alignment explanation
Indices: 672684--672823 Score: 169
Period size: 30 Copynumber: 4.9 Consensus size: 29
672674 ATGGAAAATG
* ** *
672684 TGCCACCGACTTGTGGGCTTCGGAAAAGGG
1 TGCCACTGACTTGTGGGCTTTTGAAAA-GT
* *
672714 TGCCACTGATTTGTGGGC-TTTG-AAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
*
672741 TGCCACTGACTTGTGGGCTTTT-AAAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
*
672769 TGCCACTGACTTGTGGGCTTTTGAAAAAT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
672798 ATGCCACTGACTTGTGGGCTTTTGAA
1 -TGCCACTGACTTGTGGGCTTTTGAA
672824 GGGTGATAAA
Statistics
Matches: 97, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
27 18 0.19
28 32 0.33
29 6 0.06
30 41 0.42
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.32
Consensus pattern (29 bp):
TGCCACTGACTTGTGGGCTTTTGAAAAGT
Found at i:674295 original size:23 final size:23
Alignment explanation
Indices: 674265--674308 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
674255 CATTTTATTA
*
674265 TCCCCACATAGGTCGAATCCTCG
1 TCCCCACATAAGTCGAATCCTCG
*
674288 TCCCCACATAAGTCGACTCCT
1 TCCCCACATAAGTCGAATCCT
674309 TCACCTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.41, G:0.14, T:0.23
Consensus pattern (23 bp):
TCCCCACATAAGTCGAATCCTCG
Found at i:675009 original size:52 final size:52
Alignment explanation
Indices: 674877--675088 Score: 199
Period size: 52 Copynumber: 4.2 Consensus size: 52
674867 GAAAAGTGAT
* * * * * * * *
674877 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGCTGAGAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-G-A
* * *
674931 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
*
674984 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
* *
675027 AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAAGATGGA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
*
675079 AAATGTGCCA
1 AAAGGTGCCA
675089 CCGACTTGTG
Statistics
Matches: 129, Mismatches: 19, Indels: 22
0.76 0.11 0.13
Matches are distributed among these distances:
43 38 0.29
44 1 0.01
46 1 0.01
49 1 0.01
51 1 0.01
52 41 0.32
53 6 0.05
54 5 0.04
55 35 0.27
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
Found at i:675045 original size:43 final size:43
Alignment explanation
Indices: 674984--675073 Score: 153
Period size: 43 Copynumber: 2.1 Consensus size: 43
674974 TAAAGATGGA
*
674984 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
* *
675027 AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
675070 AAAG
1 AAAG
675074 ATGGAAAATG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
Found at i:675220 original size:30 final size:29
Alignment explanation
Indices: 675084--675223 Score: 169
Period size: 30 Copynumber: 4.9 Consensus size: 29
675074 ATGGAAAATG
* ** *
675084 TGCCACCGACTTGTGGGCTTCGGAAAAGGG
1 TGCCACTGACTTGTGGGCTTTTGAAAA-GT
* *
675114 TGCCACTGATTTGTGGGC-TTTG-AAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
*
675141 TGCCACTGACTTGTGGGCTTTT-AAAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
*
675169 TGCCACTGACTTGTGGGCTTTTGAAAAAT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
675198 ATGCCACTGACTTGTGGGCTTTTGAA
1 -TGCCACTGACTTGTGGGCTTTTGAA
675224 GGGTGATAAA
Statistics
Matches: 97, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
27 18 0.19
28 32 0.33
29 6 0.06
30 41 0.42
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.32
Consensus pattern (29 bp):
TGCCACTGACTTGTGGGCTTTTGAAAAGT
Found at i:676694 original size:23 final size:23
Alignment explanation
Indices: 676664--676707 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
676654 CATTTTATTA
*
676664 TCCCCACATAGGTCGAATCCTCG
1 TCCCCACATAAGTCGAATCCTCG
*
676687 TCCCCACATAAGTCGACTCCT
1 TCCCCACATAAGTCGAATCCT
676708 TCACCTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.41, G:0.14, T:0.23
Consensus pattern (23 bp):
TCCCCACATAAGTCGAATCCTCG
Found at i:677408 original size:52 final size:52
Alignment explanation
Indices: 677276--677487 Score: 199
Period size: 52 Copynumber: 4.2 Consensus size: 52
677266 GAAAAGTGAT
* * * * * * * *
677276 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGCTGAGAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-G-A
* * *
677330 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
*
677383 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
* *
677426 AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAAGATGGA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
*
677478 AAATGTGCCA
1 AAAGGTGCCA
677488 CCGACTTGTG
Statistics
Matches: 129, Mismatches: 19, Indels: 22
0.76 0.11 0.13
Matches are distributed among these distances:
43 38 0.29
44 1 0.01
46 1 0.01
49 1 0.01
51 1 0.01
52 41 0.32
53 6 0.05
54 5 0.04
55 35 0.27
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
Found at i:677444 original size:43 final size:43
Alignment explanation
Indices: 677383--677472 Score: 153
Period size: 43 Copynumber: 2.1 Consensus size: 43
677373 TAAAGATGGA
*
677383 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
* *
677426 AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
677469 AAAG
1 AAAG
677473 ATGGAAAATG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
Found at i:677619 original size:30 final size:29
Alignment explanation
Indices: 677483--677622 Score: 169
Period size: 30 Copynumber: 4.9 Consensus size: 29
677473 ATGGAAAATG
* ** *
677483 TGCCACCGACTTGTGGGCTTCGGAAAAGGG
1 TGCCACTGACTTGTGGGCTTTTGAAAA-GT
* *
677513 TGCCACTGATTTGTGGGC-TTTG-AAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
*
677540 TGCCACTGACTTGTGGGCTTTT-AAAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
*
677568 TGCCACTGACTTGTGGGCTTTTGAAAAAT
1 TGCCACTGACTTGTGGGCTTTTGAAAAGT
677597 ATGCCACTGACTTGTGGGCTTTTGAA
1 -TGCCACTGACTTGTGGGCTTTTGAA
677623 GGGTGATAAA
Statistics
Matches: 97, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
27 18 0.19
28 32 0.33
29 6 0.06
30 41 0.42
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.32
Consensus pattern (29 bp):
TGCCACTGACTTGTGGGCTTTTGAAAAGT
Found at i:679094 original size:23 final size:23
Alignment explanation
Indices: 679064--679107 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
679054 CATTTTATTA
*
679064 TCCCCACATAGGTCGAATCCTCG
1 TCCCCACATAAGTCGAATCCTCG
*
679087 TCCCCACATAAGTCGACTCCT
1 TCCCCACATAAGTCGAATCCT
679108 TCACCTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.41, G:0.14, T:0.23
Consensus pattern (23 bp):
TCCCCACATAAGTCGAATCCTCG
Found at i:683746 original size:3 final size:3
Alignment explanation
Indices: 683738--683762 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
683728 TCTGAGTCAA
683738 CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT C
683763 TTTATCGTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:685293 original size:13 final size:13
Alignment explanation
Indices: 685275--685300 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
685265 ACATAAGTAT
685275 TGTATCGATACAA
1 TGTATCGATACAA
685288 TGTATCGATACAA
1 TGTATCGATACAA
685301 AGTTGCCCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:685365 original size:13 final size:13
Alignment explanation
Indices: 685347--685374 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
685337 CATTATTCAA
685347 TGTATCGATACAT
1 TGTATCGATACAT
685360 TGTATCGATACAT
1 TGTATCGATACAT
685373 TG
1 TG
685375 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:685369 original size:33 final size:33
Alignment explanation
Indices: 685327--685392 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
685317 GCCAAGGAAA
685327 TGTATCGATACATT-ATTCAATGTATCGATACAT
1 TGTATCGATACATTGA-TCAATGTATCGATACAT
**
685360 TGTATCGATACATTGATCTTTGTATCGATACAT
1 TGTATCGATACATTGATCAATGTATCGATACAT
685393 CTAGAAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.41
Consensus pattern (33 bp):
TGTATCGATACATTGATCAATGTATCGATACAT
Found at i:691134 original size:21 final size:21
Alignment explanation
Indices: 691108--691184 Score: 118
Period size: 21 Copynumber: 3.7 Consensus size: 21
691098 TTTTTATCCA
*
691108 AATGTATCGATACATTTATAG
1 AATGTATCGATACATTTGTAG
*
691129 AATGTATCGATACATTTGTAT
1 AATGTATCGATACATTTGTAG
*
691150 AATGTACCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
691171 AATGTATCAATACA
1 AATGTATCGATACA
691185 AGGTCCCAAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:691268 original size:19 final size:18
Alignment explanation
Indices: 691244--691306 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
691234 AAACAGAAAA
691244 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
691263 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
691276 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
691295 TGTATCGATACA
1 TGTATCGATACA
691307 ATGTATCGCT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
15 2 0.05
17 2 0.05
19 23 0.61
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:691281 original size:13 final size:13
Alignment explanation
Indices: 691263--691287 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
691253 ACATAAGTGT
691263 TGTATCGATACAA
1 TGTATCGATACAA
691276 TGTATCGATACA
1 TGTATCGATACA
691288 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:691283 original size:32 final size:32
Alignment explanation
Indices: 691242--691314 Score: 137
Period size: 32 Copynumber: 2.3 Consensus size: 32
691232 ATAAACAGAA
691242 AATGTATCGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
*
691274 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
691306 AATGTATCG
1 AATGTATCG
691315 CTACGAAGCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCGATAC
Found at i:691357 original size:21 final size:21
Alignment explanation
Indices: 691331--691371 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
691321 AGCTACTGCC
691331 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
691352 AAGGAAATGTATCGATACAT
1 AAGGAAATGTATCGATACAT
691372 CGATCTTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.10, G:0.20, T:0.27
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:693818 original size:51 final size:51
Alignment explanation
Indices: 693730--693917 Score: 261
Period size: 52 Copynumber: 3.6 Consensus size: 51
693720 TAAGTTTCTC
* *
693730 AATTTTTCATAATCGGGGATACTCCAACCCCCGGTTTTATTTCTAAAACACT
1 AATTTTCCACAATCGGGGATACTCCAA-CCCCGGTTTTATTTCTAAAACACT
*
693782 AATTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACACC
1 AATTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTTCT-AAAACACT
* * * *
693833 AATTTTCCTCTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACT
1 AATTTTCCAC-AATCGGGGATACTCCAACCCCGGTTTTATTT-CTAAAACACT
*
693886 AATTTTTCACAATCGGGGATACTCCAACCCCG
1 AATTTTCCACAATCGGGGATACTCCAACCCCG
693918 TTAATCATCG
Statistics
Matches: 121, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
50 1 0.01
51 30 0.25
52 75 0.62
53 15 0.12
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (51 bp):
AATTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACT
Found at i:693967 original size:28 final size:27
Alignment explanation
Indices: 693897--693971 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 27
693887 ATTTTTCACA
693897 ATCGGGGATACTCCAACCCCGTTAATC
1 ATCGGGGATACTCCAACCCCGTTAATC
*
693924 ATCGGGGATACTCCAACCCCGTT-ATT
1 ATCGGGGATACTCCAACCCCGTTAATC
*
693950 TTCGAGGGGATACTCCAACCCC
1 ATC--GGGGATACTCCAACCCC
693972 CGGTTTTATT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 4 0.09
27 23 0.52
28 17 0.39
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTAATC
Found at i:694098 original size:79 final size:80
Alignment explanation
Indices: 693924--694099 Score: 228
Period size: 79 Copynumber: 2.2 Consensus size: 80
693914 CCCGTTAATC
* * * *
693924 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCCGGTTTTATTTCTAAAA
1 ATCGGGGATACTCCAACCCCATTACTCTCGAGGGGATACTCCAACCCCCGATTTTATTTCTAAAA
** * * *
693989 CATTAATTTTTCATA
66 CACCAATTCTCCACA
* **
694004 ATCGAGGATACTCCAACCCCATTACTCTCGAGGGGATACTTGAA-CCCCGATTTTATTTCTAAAA
1 ATCGGGGATACTCCAACCCCATTACTCTCGAGGGGATACTCCAACCCCCGATTTTATTTCTAAAA
694068 CACCAATTCTCCACA
66 CACCAATTCTCCACA
*
694083 ATCGGGGATATTCCAAC
1 ATCGGGGATACTCCAAC
694100 TCCGATTTTA
Statistics
Matches: 82, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
79 44 0.54
80 38 0.46
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (80 bp):
ATCGGGGATACTCCAACCCCATTACTCTCGAGGGGATACTCCAACCCCCGATTTTATTTCTAAAA
CACCAATTCTCCACA
Found at i:694111 original size:51 final size:51
Alignment explanation
Indices: 694050--694150 Score: 150
Period size: 51 Copynumber: 2.0 Consensus size: 51
694040 TACTTGAACC
* * *
694050 CCGATTTTATTTCTAAAACACCAA-TTCTCCACAATCGGGGATATTCCAACT
1 CCGATTTTATTTCCAAAACACCAATTTCT-CACAATCGAGGATACTCCAACT
*
694101 CCGATTTTATTTCCAAAACACTAATTTCTCACAATCGAGGATACTCCAAC
1 CCGATTTTATTTCCAAAACACCAATTTCTCACAATCGAGGATACTCCAAC
694151 CTCGTTATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 41 0.91
52 4 0.09
ACGTcount: A:0.33, C:0.28, G:0.09, T:0.31
Consensus pattern (51 bp):
CCGATTTTATTTCCAAAACACCAATTTCTCACAATCGAGGATACTCCAACT
Found at i:694314 original size:79 final size:79
Alignment explanation
Indices: 694162--694339 Score: 195
Period size: 79 Copynumber: 2.3 Consensus size: 79
694152 TCGTTATTTC
*
694162 ATCGGGGATACTCCAACCCTATTACTTCCGAGGGGATACTCCAACCCTGGCTTTATTTCCAAAAT
1 ATCGGGGATACTCCAACCCTATTACTTCCGAGGGGATACTCCAACCCTGACTTTATTTCCAAAAT
*
694227 ATTGATTT-CTCATA
66 ACTGATTTCCT-ATA
* * * **
694241 ATTGGGGATACTCCAACCCTATTATTTTC-ACGGGGATACTCCAATCCC-GACTTTATATTTGAA
1 ATCGGGGATACTCCAACCCTATTACTTCCGA-GGGGATACTCCAA-CCCTGACTTTAT-TTCCAA
694304 ACAT-CT-ATTTCCTATA
63 A-ATACTGATTTCCTATA
* *
694320 ATCGGGGACACTTCAACCCT
1 ATCGGGGATACTCCAACCCT
694340 TGTCTTATTT
Statistics
Matches: 84, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
78 1 0.01
79 70 0.83
80 11 0.13
81 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCTATTACTTCCGAGGGGATACTCCAACCCTGACTTTATTTCCAAAAT
ACTGATTTCCTATA
Found at i:694350 original size:237 final size:238
Alignment explanation
Indices: 693795--694418 Score: 721
Period size: 237 Copynumber: 2.6 Consensus size: 238
693785 TTTCCACAAT
* * *
693795 CGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTCTAATCGGGGATACTCCA
1 CGGGGATACTCCAACCCCGATTTTATTTT-AAAACACCAA-TTTCCTATAATCGGGGATACTTCA
*
693860 ACTCCGATTTTATTTCCAAAAACACTAATTTTTCACAATCGGGGATACTCCAACCCCGTTA-ATC
64 ACTCCGATTTTATTTCC-AAAACACTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTC
* * * * *
693924 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCCGGTTTTATTTCTAAAA
128 ATCGGGGATACTCCAACCCCATTACTTCCGAGGGGATACTCCAACCCCCGGCTTTATTTCCAAAA
*
693989 CATTAATTTTTCATAATCGAGGATACTCCAACCCCATTACTCTCGA
193 CATTAATTTCTCATAATCGAGGATACTCCAACCCCATTACTCTCGA
** *
694035 -GGGGATACTTGAACCCCGATTTTATTTCTAAAACACCAATTCTCC-ACAATCGGGGATA-TTCC
1 CGGGGATACTCCAACCCCGATTTTATTT-TAAAACACCAATT-TCCTATAATCGGGGATACTT-C
* * *
694097 AACTCCGATTTTATTTCCAAAACACTAATTTCTCACAATCGAGGATACTCCAACCTCGTTATTTC
63 AACTCCGATTTTATTTCCAAAACACTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTC
* *
694162 ATCGGGGATACTCCAACCCTATTACTTCCGAGGGGATACTCCAA-CCCTGGCTTTATTTCCAAAA
128 ATCGGGGATACTCCAACCCCATTACTTCCGAGGGGATACTCCAACCCCCGGCTTTATTTCCAAAA
* * * * * * *
694226 TATTGATTTCTCATAATTGGGGATACTCCAACCCTATTATTTTC-A
193 CATTAATTTCTCATAATCGAGGATACTCCAACCCCATTACTCTCGA
* * * * * *
694271 CGGGGATACTCCAATCCCGACTTTATATTTGAAACATCTATTTCCTATAATCGGGGACACTTCAA
1 CGGGGATACTCCAACCCCGATTTTAT-TTTAAAACACCAATTTCCTATAATCGGGGATACTTCAA
* * * * * *
694336 C-CCTTG-TCTTATTTCTAAATCA-TCGATTTTTCAAAATCGGGGATTCTCCAACCCCGTTATTT
65 CTCC--GATTTTATTTCCAAAACACT-AATTTTTCACAATCGGGGATACTCCAACCCCGTTATTT
*
694398 --TCGATGGGATACTCTAACCCC
127 CATCG--GGGATACTCCAACCCC
694419 GTTATTATCT
Statistics
Matches: 326, Mismatches: 45, Indels: 29
0.81 0.11 0.07
Matches are distributed among these distances:
235 3 0.01
236 7 0.02
237 199 0.61
238 79 0.24
239 37 0.11
240 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (238 bp):
CGGGGATACTCCAACCCCGATTTTATTTTAAAACACCAATTTCCTATAATCGGGGATACTTCAAC
TCCGATTTTATTTCCAAAACACTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCATC
GGGGATACTCCAACCCCATTACTTCCGAGGGGATACTCCAACCCCCGGCTTTATTTCCAAAACAT
TAATTTCTCATAATCGAGGATACTCCAACCCCATTACTCTCGA
Found at i:700772 original size:61 final size:61
Alignment explanation
Indices: 700556--700786 Score: 291
Period size: 61 Copynumber: 3.9 Consensus size: 61
700546 GAGCAGGACG
* *
700556 CCTTTTAAAGCCCACACGAGTTGGTGGCAC-CCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTC-CCAGTCCTCAAAGAGCAGGATGCC--TTTT
* *
700619 CTTTTTAAAGCCCACACAAGTTGGTGGCACCTT--TAGTCCTCAAAGAGCAGGATGCC-TTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
700678 -C----AAAGCACACACGAGTTGGTGGCACTTCTCAGTCCTCAAAGAGCAAGATGCCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGATGCCTTTT
700734 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGA
700787 CGCTCCCTCC
Statistics
Matches: 145, Mismatches: 13, Indels: 22
0.81 0.07 0.12
Matches are distributed among these distances:
53 3 0.02
54 21 0.14
55 21 0.14
56 3 0.02
57 1 0.01
59 3 0.02
61 43 0.30
62 22 0.15
63 27 0.19
64 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (61 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:700904 original size:61 final size:59
Alignment explanation
Indices: 700828--701125 Score: 355
Period size: 61 Copynumber: 5.1 Consensus size: 59
700818 GAGTAGGATG
* * * *
700828 CCTTTTGAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCCCAAAGAGCAAGACGTCTTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG-CTT-T
*
700889 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCTAGTCCTCAAAGAGCAAGACGCCTTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-TAGTCCTCAAAGAGCAGGACG-CTT-T
700950 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCTAGTCCTCAAAGAGCAGGACG----
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-TAGTCCTCAAAGAGCAGGACGCTTT
* * * * *
701005 CCTTTCAAAGCCCACACGAGTTGGTGACACCTTTCAGTTCTCAAAGAGCAGGACG----
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCTTT
* *
701060 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACTCTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCTTT
701119 CTCTTTT
1 C-CTTTT
701126 CACCCTTTAG
Statistics
Matches: 213, Mismatches: 17, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
55 93 0.44
56 4 0.02
59 1 0.00
60 9 0.04
61 106 0.50
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (59 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCTTT
Found at i:700954 original size:155 final size:155
Alignment explanation
Indices: 700654--700944 Score: 440
Period size: 155 Copynumber: 1.9 Consensus size: 155
700644 GGCACCTTTA
* * *
700654 GTCCTCAAAGAGCAGGATGCCTTTCAAAGCACACACGAGTTGGTGGCACTTCTCAGTCCTCAAAG
1 GTCCTCAAAGAGCAGGATGCCTTTCAAAGCACACACAAGCTGGTGGCACTTCTCAGTCCCCAAAG
* *
700719 AGCAAGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCA
66 AGCAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCA
*
700784 GGACGCTCCCTCCTTTCGCCTTTTT
131 AGACGCTCCCTCCTTTCGCCTTTTT
* ** * *
700809 GTCCTCAAAGAGTAGGATGCCTTTTGAAGCCCACACAAGCTGGTGGCACCTT-TTAGTCCCCAAA
1 GTCCTCAAAGAGCAGGATGCCTTTCAAAGCACACACAAGCTGGTGGCA-CTTCTCAGTCCCCAAA
* * *
700873 GAGCAAGACGTCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGC
65 GAGCAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGC
700938 AAGACGC
130 AAGACGC
700945 CTTCTCCTTT
Statistics
Matches: 121, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
155 118 0.98
156 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (155 bp):
GTCCTCAAAGAGCAGGATGCCTTTCAAAGCACACACAAGCTGGTGGCACTTCTCAGTCCCCAAAG
AGCAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCA
AGACGCTCCCTCCTTTCGCCTTTTT
Found at i:700967 original size:216 final size:209
Alignment explanation
Indices: 700621--701005 Score: 583
Period size: 216 Copynumber: 1.8 Consensus size: 209
700611 CCTTTTTTCT
* *
700621 TTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCAC
1 TTTTAAAGCCCACACAAGCTGGTGGCACCTTTAGTCCCCAAAGAGCAGGATGCCTTTCAAAGCAC
* * *
700686 ACACGAGTTGGTGGCACTTCTCAGTCCTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGCCCACAC
66 ACACAAGTTGGTGGCACTTCTCAGTCCTCAAAGAGCAAGACGCCTTCTCCTTTTAAAGCCCACAC
700751 AAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCGCCTTTTTGTCCTCA
131 AAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCGCCTTTTTGTCCTCA
700816 AAGAGTAGGATGCC
196 AAGAGTAGGATGCC
* * * *
700830 TTTTGAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCCCAAAGAGCAAGACGTCTTCTCCTTTT
1 TTTTAAAGCCCACACAAGCTGGTGGCACC-TTTAGTCCCCAAAGAGC-AG--G--AT-GCCTTTC
*
700895 AAAGCCCACACAAGTTGGTGGCACTT-TCTAGTCCTCAAAGAGCAAGACGCCTTCTCCTTTTAAA
59 AAAGCACACACAAGTTGGTGGCACTTCTC-AGTCCTCAAAGAGCAAGACGCCTTCTCCTTTTAAA
* *
700959 GCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACGC
123 GCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGC
701006 CTTTCAAAGC
Statistics
Matches: 156, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
209 27 0.17
210 16 0.10
211 2 0.01
213 1 0.01
215 3 0.02
216 107 0.69
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (209 bp):
TTTTAAAGCCCACACAAGCTGGTGGCACCTTTAGTCCCCAAAGAGCAGGATGCCTTTCAAAGCAC
ACACAAGTTGGTGGCACTTCTCAGTCCTCAAAGAGCAAGACGCCTTCTCCTTTTAAAGCCCACAC
AAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCGCCTTTTTGTCCTCA
AAGAGTAGGATGCC
Found at i:701048 original size:55 final size:56
Alignment explanation
Indices: 700809--701113 Score: 368
Period size: 55 Copynumber: 5.3 Consensus size: 56
700799 TCGCCTTTTT
* * * *
700809 GTCCTCAAAGAGTAGGATGCCTTTTGAAGCCCACACAAGCTGGTGGCACCTTT-TA
1 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCTA
* *
700864 GTCCCCAAAGAGCAAGACGTCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCTA
1 GTCCTCAAAGAGCAGGACG------CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCTA
*
700925 GTCCTCAAAGAGCAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCTA
1 GTCCTCAAAGAGCAGGACG------CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCTA
* * *
700986 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGACACCTTTC-A
1 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCTA
*
701041 GTTCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCTA
1 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCTA
701096 GTCCTCAAAGAGCAGGAC
1 GTCCTCAAAGAGCAGGAC
701114 TCTTTCTCTT
Statistics
Matches: 224, Mismatches: 17, Indels: 18
0.86 0.07 0.07
Matches are distributed among these distances:
54 3 0.01
55 106 0.47
56 5 0.02
60 4 0.02
61 106 0.47
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (56 bp):
GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCTA
Found at i:701156 original size:326 final size:329
Alignment explanation
Indices: 700556--701269 Score: 965
Period size: 326 Copynumber: 2.2 Consensus size: 329
700546 GAGCAGGACG
* ** * * * * *
700556 CCTTTTAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGATGCCTTTTTTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAAGACGCC-TTTCTCC
*
700621 TTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCAC
65 TTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCAC
* * *
700686 ACACGAGTTGGTGGCACTTCTCAGTCCTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGCCCACAC
130 ACACGAGTTGGTGACACTTCTCAGTCCTCAAAGAGCAAGA-GAC--TGCCTTTTAAAGCCCACAC
* * *
700751 AAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCGCCTTTTTGTCCTCA
192 AAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCACCCTTTAGTCCTCA
* ** * * *
700816 AAGAGTAGGATGCCTTTTGAAGCCCACACAAGC-TGGTGGCACCTTTTAGTCCCCAAAGAGCAAG
257 AAGAGCAGGATGCCTTTCAAAGCCCACACAA-CTTGGTGGCACCCTCTACTCCCCAAAGAGCAAG
*
700880 ACGTCTTCT
321 ACGCCTTCT
700889 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAAGACGCC-TTCTCCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAAGACGCCTTTCTCCT
* *
700953 TTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCC
66 TTTAAAGCCCACACAAGTTGGTGGCACCTT-TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCAC
*
701018 ACACGAGTTGGTGACACCTT-TCAGTTCTCAAAGAGC-AG-GAC-GCCTTTTAAAGCCCACACAA
130 ACACGAGTTGGTGACA-CTTCTCAGTCCTCAAAGAGCAAGAGACTGCCTTTTAAAGCCCACACAA
* * ** *
701079 GTTGGTGGCACCTT-CTAGTCCTCAAAGAGCAGGACTCTTTCTCTTTTCACCCTTTAGTCCTCAA
194 GTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCACCCTTTAGTCCTCAA
* *
701143 AGAGCAGGATGCCTTTCAAAGCCCACACGACTTGGTGGCACCCTCTACTCCTCAAAGAGCAAGAC
258 AGAGCAGGATGCCTTTCAAAGCCCACACAACTTGGTGGCACCCTCTACTCCCCAAAGAGCAAGAC
*
701208 GCCTTTT
323 GCCTTCT
* * **
701215 TCTTTTCAAAGCCCACTCAAGTTGGTGGCACTTGGTAGTCCTCAAAGAGCAAGAC
1 CCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAAGAC
701270 TCACTTTATT
Statistics
Matches: 339, Mismatches: 37, Indels: 16
0.86 0.09 0.04
Matches are distributed among these distances:
325 1 0.00
326 136 0.40
327 48 0.14
329 2 0.01
331 36 0.11
332 62 0.18
333 54 0.16
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (329 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAAGACGCCTTTCTCCT
TTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCACA
CACGAGTTGGTGACACTTCTCAGTCCTCAAAGAGCAAGAGACTGCCTTTTAAAGCCCACACAAGT
TGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCACCCTTTAGTCCTCAAAGA
GCAGGATGCCTTTCAAAGCCCACACAACTTGGTGGCACCCTCTACTCCCCAAAGAGCAAGACGCC
TTCT
Found at i:704959 original size:13 final size:13
Alignment explanation
Indices: 704941--704967 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
704931 ACAAATAGAA
704941 AATGTATCGATAC
1 AATGTATCGATAC
704954 AATGTATCGATAC
1 AATGTATCGATAC
704967 A
1 A
704968 TAAGTTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:704965 original size:34 final size:35
Alignment explanation
Indices: 704922--705076 Score: 122
Period size: 34 Copynumber: 4.3 Consensus size: 35
704912 TCAAACAGTT
*
704922 TGTATCGATACAAAT-AGAAAATGTATCGATACAA
1 TGTATCGATACAAATAAGGAAATGTATCGATACAA
*** *
704956 TGTATCGATAC--ATAA-GTTTTGTATCGATAAAA
1 TGTATCGATACAAATAAGGAAATGTATCGATACAA
* *
704988 TGTATCGCTACGAAGCTACTACCAAGGAAATGTATCGATACAT
1 TGTATCGATAC-AA---A-T---AAGGAAATGTATCGATACAA
* *
705031 TGTATCGATAC-ATTAAGGAAATGTATCGATACAT
1 TGTATCGATACAAATAAGGAAATGTATCGATACAA
705065 TGTATCGATACA
1 TGTATCGATACA
705077 TCGATCTTTG
Statistics
Matches: 95, Mismatches: 13, Indels: 25
0.71 0.10 0.19
Matches are distributed among these distances:
32 24 0.25
33 1 0.01
34 42 0.44
37 1 0.01
38 1 0.01
39 1 0.01
41 1 0.01
42 2 0.02
43 22 0.23
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (35 bp):
TGTATCGATACAAATAAGGAAATGTATCGATACAA
Found at i:705036 original size:13 final size:13
Alignment explanation
Indices: 705018--705077 Score: 67
Period size: 13 Copynumber: 5.0 Consensus size: 13
705008 ACCAAGGAAA
705018 TGTATCGATACAT
1 TGTATCGATACAT
705031 TGTATCGATACA-
1 TGTATCGATACAT
**
705043 T-TAAGGA-A-A-
1 TGTATCGATACAT
705052 TGTATCGATACAT
1 TGTATCGATACAT
705065 TGTATCGATACAT
1 TGTATCGATACAT
705078 CGATCTTTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 2 0.05
10 5 0.13
11 5 0.13
12 2 0.05
13 25 0.64
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:705077 original size:34 final size:34
Alignment explanation
Indices: 705011--705077 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
705001 AGCTACTACC
705011 AAGGAAATGTATCGATACATTGTATCGATACATT
1 AAGGAAATGTATCGATACATTGTATCGATACATT
705045 AAGGAAATGTATCGATACATTGTATCGATACAT
1 AAGGAAATGTATCGATACATTGTATCGATACAT
705078 CGATCTTTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (34 bp):
AAGGAAATGTATCGATACATTGTATCGATACATT
Found at i:705858 original size:31 final size:31
Alignment explanation
Indices: 705756--705896 Score: 200
Period size: 30 Copynumber: 4.6 Consensus size: 31
705746 CAAATCTCTC
*
705756 TTCTT-AAAGTCCACAACTCAGTGGCAT-TT
1 TTCTTCAAAGTCCACGACTCAGTGGCATCTT
705785 TT-TTCCAAAGTCCACGACTCAGTGGCATCTT
1 TTCTT-CAAAGTCCACGACTCAGTGGCATCTT
* *
705816 TTC-CCAAAGTCCACGACTCAGTGGCATCGT
1 TTCTTCAAAGTCCACGACTCAGTGGCATCTT
705846 TTCTTCAAAGTCCACGACTCAGTGGCATCTT
1 TTCTTCAAAGTCCACGACTCAGTGGCATCTT
* *
705877 TTCTTCAAAGCCCACAACTC
1 TTCTTCAAAGTCCACGACTC
705897 TACGGCACAT
Statistics
Matches: 100, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
28 2 0.02
29 2 0.02
30 49 0.49
31 47 0.47
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (31 bp):
TTCTTCAAAGTCCACGACTCAGTGGCATCTT
Found at i:705871 original size:61 final size:60
Alignment explanation
Indices: 705761--705896 Score: 202
Period size: 61 Copynumber: 2.2 Consensus size: 60
705751 CTCTCTTCTT
*
705761 AAAGTCCACAACTCAGTGGCATTTTTTTCCAAAGTCCACGACTCAGTGGCATCTTTTCCC
1 AAAGTCCACAACTCAGTGGCATTTTCTTCCAAAGTCCACGACTCAGTGGCATCTTTTCCC
* *
705821 AAAGTCCACGACTCAGTGGCATCGTTTCTT-CAAAGTCCACGACTCAGTGGCATCTTTTCTTC
1 AAAGTCCACAACTCAGTGGCAT--TTTCTTCCAAAGTCCACGACTCAGTGGCATCTTTTC-CC
*
705883 AAAGCCCACAACTC
1 AAAGTCCACAACTC
705897 TACGGCACAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
60 21 0.31
61 29 0.43
62 18 0.26
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (60 bp):
AAAGTCCACAACTCAGTGGCATTTTCTTCCAAAGTCCACGACTCAGTGGCATCTTTTCCC
Found at i:705923 original size:34 final size:34
Alignment explanation
Indices: 705880--706152 Score: 313
Period size: 34 Copynumber: 7.9 Consensus size: 34
705870 GCATCTTTTC
* * *
705880 TTCAAAGCCCACAACTCTACGGCACATTTTTCTT
1 TTCAAAGCCCACAACTCCATGGCACCTTTTTCTT
* * *
705914 TTAAAAGCCCACAACTCCGTGGCACCCTTTTCTTTT
1 TTCAAAGCCCACAACTCCATGGCA-CCTTTT-TCTT
**
705950 CTTCAAAGCCCACAACTCTGTGGCACCTTTTTCTT
1 -TTCAAAGCCCACAACTCCATGGCACCTTTTTCTT
*
705985 TTCAAAGCCCATAACTCCATGGCACCTTTTTCTTTT
1 TTCAAAGCCCACAACTCCATGGCACCTTTTTC--TT
*
706021 CTTCAAAGCCCACAACTCCGTGGCACCTTTTTC--
1 -TTCAAAGCCCACAACTCCATGGCACCTTTTTCTT
*
706054 TTCAAAGCCCACAACTCCATAGCACCTTTTTC--
1 TTCAAAGCCCACAACTCCATGGCACCTTTTTCTT
*
706086 TTCAAAGCCCACAACTCCATGGCACATTTTTCCTT
1 TTCAAAGCCCACAACTCCATGGCACCTTTTT-CTT
* *
706121 TT-AAAGTCCACAACTCCGTGGCACTCTTTTTC
1 TTCAAAGCCCACAACTCCATGGCAC-CTTTTTC
706153 CATTTTAAGT
Statistics
Matches: 208, Mismatches: 21, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
32 59 0.28
33 1 0.00
34 70 0.34
35 15 0.07
36 11 0.05
37 52 0.25
ACGTcount: A:0.23, C:0.34, G:0.10, T:0.33
Consensus pattern (34 bp):
TTCAAAGCCCACAACTCCATGGCACCTTTTTCTT
Found at i:705981 original size:71 final size:71
Alignment explanation
Indices: 705873--706150 Score: 356
Period size: 71 Copynumber: 4.0 Consensus size: 71
705863 CTCAGTGGCA
* * * *
705873 TCTTTTCTTCAAAGCCCACAACTCTACGGCACATTTTTCTTTTAAAAGCCCACAACTCCGTGGCA
1 TCTTTTCTTCAAAGCCCACAACTCCATGGCACATTTTTCTTTTCAAAGCCCACAACTCCATGGCA
705938 CCCTTT
66 CCCTTT
** * *
705944 TCTTTTCTTCAAAGCCCACAACTCTGTGGCACCTTTTTCTTTTCAAAGCCCATAACTCCATGGCA
1 TCTTTTCTTCAAAGCCCACAACTCCATGGCACATTTTTCTTTTCAAAGCCCACAACTCCATGGCA
*
706009 CCTTTT
66 CCCTTT
* * *
706015 TCTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTTTTC--TTCAAAGCCCACAACTCCATAGCA
1 TCTTTTCTTCAAAGCCCACAACTCCATGGCACATTTTTCTTTTCAAAGCCCACAACTCCATGGCA
706078 -CC---
66 CCCTTT
* *
706080 T-TTTTCTTCAAAGCCCACAACTCCATGGCACATTTTTCCTTTT-AAAGTCCACAACTCCGTGGC
1 TCTTTTCTTCAAAGCCCACAACTCCATGGCACATTTTT-CTTTTCAAAGCCCACAACTCCATGGC
*
706143 ACTCTTT
65 ACCCTTT
706150 T
1 T
706151 TCCATTTTAA
Statistics
Matches: 183, Mismatches: 17, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
64 34 0.19
65 2 0.01
66 18 0.10
67 3 0.02
68 1 0.01
69 22 0.12
70 1 0.01
71 102 0.56
ACGTcount: A:0.23, C:0.34, G:0.10, T:0.33
Consensus pattern (71 bp):
TCTTTTCTTCAAAGCCCACAACTCCATGGCACATTTTTCTTTTCAAAGCCCACAACTCCATGGCA
CCCTTT
Found at i:705984 original size:32 final size:32
Alignment explanation
Indices: 705756--706185 Score: 309
Period size: 32 Copynumber: 13.1 Consensus size: 32
705746 CAAATCTCTC
* *
705756 TTCTT-AAAGTCCACAACTCAGTGGCA--TTT
1 TTCTTCAAAGCCCACAACTCCGTGGCACCTTT
* * * *
705785 TT-TTCCAAAGTCCACGACTCAGTGGCATC-TT
1 TTCTT-CAAAGCCCACAACTCCGTGGCACCTTT
* * * * * *
705816 TTC-CCAAAGTCCACGACTCAGTGGCATC-GT
1 TTCTTCAAAGCCCACAACTCCGTGGCACCTTT
* * * *
705846 TTCTTCAAAGTCCACGACTCAGTGGCATC-TT
1 TTCTTCAAAGCCCACAACTCCGTGGCACCTTT
*** *
705877 TTCTTCAAAGCCCACAACTCTACGGCACATTT
1 TTCTTCAAAGCCCACAACTCCGTGGCACCTTT
*
705909 TTCTTTTAAAAGCCCACAACTCCGTGGCACCCTTTTCTT
1 TTC--TTCAAAGCCCACAACTCCGTGGCA-CC---T-TT
*
705948 TTCTTCAAAGCCCACAACTCTGTGGCACCTTT
1 TTCTTCAAAGCCCACAACTCCGTGGCACCTTT
* *
705980 TTCTTTTCAAAGCCCATAACTCCATGGCACCTTTTTCTT
1 TTC--TTCAAAGCCCACAACTCCGTGGCACC----T-TT
706019 TTCTTCAAAGCCCACAACTCCGTGGCACCTTT
1 TTCTTCAAAGCCCACAACTCCGTGGCACCTTT
* *
706051 TTCTTCAAAGCCCACAACTCCATAGCACCTTT
1 TTCTTCAAAGCCCACAACTCCGTGGCACCTTT
* *
706083 TTCTTCAAAGCCCACAACTCCATGGCACATTT
1 TTCTTCAAAGCCCACAACTCCGTGGCACCTTT
* *
706115 TTCCTTTTAAAGTCCACAACTCCGTGGCACTCTTT
1 TT-C-TTCAAAGCCCACAACTCCGTGGCAC-CTTT
** * * *
706150 TTCCATTTTAAGTCTACAACTCCGTGGCACCCTT
1 TT-C-TTCAAAGCCCACAACTCCGTGGCACCTTT
706184 TT
1 TT
706186 AAGTCCACAA
Statistics
Matches: 341, Mismatches: 36, Indels: 43
0.81 0.09 0.10
Matches are distributed among these distances:
28 2 0.01
29 2 0.01
30 48 0.14
31 51 0.15
32 74 0.22
33 3 0.01
34 70 0.21
35 31 0.09
36 2 0.01
37 46 0.13
38 2 0.01
39 10 0.03
ACGTcount: A:0.23, C:0.32, G:0.12, T:0.33
Consensus pattern (32 bp):
TTCTTCAAAGCCCACAACTCCGTGGCACCTTT
Found at i:706230 original size:98 final size:96
Alignment explanation
Indices: 705845--706231 Score: 271
Period size: 101 Copynumber: 3.9 Consensus size: 96
705835 AGTGGCATCG
* * * * * * *
705845 TTTCTTCAAAGTCCACGACT-CAGTGGCATCTTTTCTTCAAAGCCCACAACTCTACGGCACATTT
1 TTTCTTCAAAGCCCACAACTCCA-TAGCACCTCTTCTT-AAAGCCCACAACTCCATGGCACATTT
* *
705909 TTCTTTTAAAAGCCCACAACTCCGTGGCACCCTTTTCT
64 CTCCTTTAAAAGCCCACAACTCCGTGGCA-CC---T-T
** * * *
705947 TTTCTTCAAAGCCCACAACTCTGTGGCACCTTTTTCTTTTCAAAGCCCATAACTCCATGGCACCT
1 TTTCTTCAAAGCCCACAACTCCATAGCACC-TCTTC--TT-AAAGCCCACAACTCCATGGCA-C-
* ** *
706012 TTTTCTTTTCTTCAAAGCCCACAACTCCGTGGCACCTT
60 ATTTCTCCT-TTAAAAGCCCACAACTCCGTGGCACCTT
*
706050 TTTCTTCAAAGCCCACAACTCCATAGCACCTTTTTCTTCAAAGCCCACAACTCCATGGCACATTT
1 TTTCTTCAAAGCCCACAACTCCATAGCACC-TCTTCTT-AAAGCCCACAACTCCATGGCACATTT
* * *
706115 TTCCTTTTAAAGTCCACAACTCCGTGGCACTCTT
64 CTCCTTTAAAAGCCCACAACTCCGTGGCAC-CTT
** * * * * * *
706149 TTTCCATTTTAAGTCTACAACTCCGTGGCACC-CTT-TT-AAGTCCACAACTCCGTGGCATC-TT
1 TTT-C-TTCAAAGCCCACAACTCCATAGCACCTCTTCTTAAAGCCCACAACTCCATGGCA-CATT
706210 TCTCCATTTCAAAAGCCCACAA
63 TCTCC-TTT-AAAAGCCCACAA
706232 GTCAATGGCA
Statistics
Matches: 238, Mismatches: 34, Indels: 30
0.79 0.11 0.10
Matches are distributed among these distances:
96 24 0.10
97 4 0.02
98 35 0.15
99 13 0.05
100 2 0.01
101 43 0.18
102 24 0.10
103 39 0.16
104 1 0.00
105 21 0.09
106 1 0.00
107 8 0.03
108 23 0.10
ACGTcount: A:0.24, C:0.33, G:0.11, T:0.32
Consensus pattern (96 bp):
TTTCTTCAAAGCCCACAACTCCATAGCACCTCTTCTTAAAGCCCACAACTCCATGGCACATTTCT
CCTTTAAAAGCCCACAACTCCGTGGCACCTT
Found at i:706388 original size:43 final size:45
Alignment explanation
Indices: 706267--709115 Score: 2261
Period size: 43 Copynumber: 60.1 Consensus size: 45
706257 CACAAGTTGG
* *
706267 TGGCATCTTCTTTTAAGTCTAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCA-CTTC-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * *
706314 TGGCACCTTGTCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACAT
1 TGGCA-C-T-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
706362 TGGCAC-T-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* *
706405 TGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCA-C-T-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
706453 TGGCAC-T-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * *
706496 TGGCACCTTGTCTTTAAGACCAATGTCGCTGACCTTGAATCAGCACAT
1 TGGCA-C-T-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
706544 TGGCAC--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * * * *
706587 TAGCGC-CTTTGTCATCTTTAAGACCAATGTCGCTAGCCTTGAATCAACACCT
1 T-G-GCAC----T--TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * *
706639 TGGCAC--CTTTAAGTCCAATATCACTGGCCTTGAATAAGCATAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
706682 TGGCACCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCA-C----T--TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* *
706734 TGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCA-C-T-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
706782 TGGCAC-T-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * *
706825 TGGCACCTTGTCTTTAAGACCAATTTCACTGGCCTTGAATCAGCACAT
1 TGGCA-C-T-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
706873 TGGCAC--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * *
706916 TGGCACCTTTGTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAACACAT
1 TGGCA-C----T--TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
706968 TGGCAC--CTTTAAGTCCAATATCACTGGCCTTGAATCAGCACAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
707011 TGGCACCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCA-C----T--TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* *
707063 TGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCA-C-T-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * *
707111 TGGCAC--ATTTAAGTCCATTATCGCTGGCCTTGAATCAGCATAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * *
707154 TGGCACCTTGTCGTTAAGACCAATTTCGCTGGCCTTGAATCAGCACAT
1 TGGCA-C-T-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
707202 TGGCAC--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
707245 TGGCACCTTTGTCATCTTTAA-TACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCA-C----T--TCTTTAAGT-CCAATATCGCTGGCCTTGAATCAGCACAT
* *
707297 TGGCAC--CTTTAAGTCCAATATCGCTGGCCTTCG-ACCAGCATAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTT-GAATCAGCACAT
* * * * *
707340 TGGCGCCTTTGTCATCTTTAAGACAAATGTCGCTGGCCTTAAATCAGCACAT
1 TGGC-AC----T--TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * *
707392 TAGCACCTTCATCATTAAGACCAATGTCGCT-GCCTTGAATCAGCACAT
1 TGGCA-CTTC-T--TTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* *
707440 TGGCAC--CTTTAAG-CCTAATATCGCTGGCCTTGAATTAGCATAT
1 TGGCACTTCTTTAAGTCC-AATATCGCTGGCCTTGAATCAGCACAT
* * * *
707483 TGGCGCCTTTGACATCTTCAAGACCAATGTCGCCGGCCTTGAATCAGCACAT
1 TGGC-AC-TT--C-T-TT-AAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* *
707535 TGGCACTTTCATCCTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCAC-TTC-T--TTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* *
707584 TGGCACCTTCATCTTTAAGTCAAATATCGCTAGCCTTGAATCAGCACAT
1 TGGCA-C-T--TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * **
707633 TGGCGCCTTTGTCATCTTTAAGTCTAATATCGCTGGCCTTGAATCAGCATGT
1 TGGC-AC----T--TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * * *
707685 TGGCACCTTGTCTTCAAGACCAATGTCGCTGGCCTTGAATCAGCACGT
1 TGGCA-C-T-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* *
707733 TGGCAC-T-TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * *
707776 TGGCACCTTGTCTTTAAGACCAATGTGGCTGGCCTTGAATCAGCACAT
1 TGGCA-C-T-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
707824 TGGCAC--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * ** * *
707867 TGGCGCCTTTGTCATCTTTAAGACCAATGCCGCTGGCCCTGAATCAACACAT
1 TGGC-AC----T--TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * *
707919 TGGCAC--CTTTAAGTCCAATATCGCTGGCCTTCAACCAGCATAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * * * * *
707962 TGGCGCCTTTGTCATCTTTAAGACCAATGTCACTAGCCTTGAATCAGCATAT
1 TGGC-AC----T--TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * *
708014 TGGCACCTTCATCTTTAAGACCAATGTCGTTGGCCTTGAATCAGCACAT
1 TGGCA-C-T--TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * *
708063 TGGCAC--CTTTAAGCCCAATATCGCTGGCCTTGAATTAGCATAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * *
708106 TGGCGCCTTTGTCATCTTCAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGC-AC--T-TC-T-TT-AAGTCCAATATCGCTGGCCTTGAATCAGCACAT
** * *
708158 TGGCACTTTCATCCTTAAGAACAATGTCGCCT-GCCTTGAATAAGCACAT
1 TGGCAC-TTC-T--TTAAGTCCAATATCG-CTGGCCTTGAATCAGCACAT
*
708207 TGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCA-C-T--TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* *
708256 TGGCGCCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGC-AC----T--TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* *
708308 TGGCACCTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCA-C-T-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * *
708356 TGGCAC--CTTTAAGTCCAATATCGCTGGCCTTCAATCAGTATAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * *
708399 TGGCACCTTGTCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACAT
1 TGGCA-C-T-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
708447 TGGCAC--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCGCAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
708490 TGGCACCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCA-C----T--TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * * *
708542 TGGCACCTTGTCTTTAAGACCAATGTCGCTGGCTTTGACTCAGCACAT
1 TGGCA-C-T-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* *
708590 TGGCAC-T-TTTAAGTCCAATATCGCTGGCCTTGAATCACCATAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * * *
708633 TGGCACCTTGTCTTTAAGACTAATGTCGCTGGCCTTGAATCATCACAT
1 TGGCA-C-T-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
708681 TGGCAC--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * *
708724 TGGCACCTTGTCTTTAAGACCAATGTCGCTAGCCTTGAATCAGCACAT
1 TGGCA-C-T-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
708772 TGGCAC--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * * *
708815 TGGCGCCTTTGTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAACACAT
1 TGGC-AC----T--TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
708867 TGGCAC--CTTTAAGTCCAATATCAG-TGGCCTTGAATCAGCATAT
1 TGGCACTTCTTTAAGTCCAATATC-GCTGGCCTTGAATCAGCACAT
* * *
708910 TGGCACCTTTGTCATCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACAT
1 TGGCA-C----T--TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
*
708962 TGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCA-C-T--TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* *
709011 TGAAGC-CTTTGTCGTCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACAT
1 TG--GCAC----T--TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
* * *
709063 TGGCACCTTTATCTTTAAATCCAATATCACTGGCCTTGAATCAGCATAT
1 TGGCA-C--T-TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
709112 TGGC
1 TGGC
709116 GTCTTCGTCA
Statistics
Matches: 2325, Mismatches: 275, Indels: 402
0.77 0.09 0.13
Matches are distributed among these distances:
41 2 0.00
42 13 0.01
43 748 0.32
44 31 0.01
45 3 0.00
46 2 0.00
47 27 0.01
48 554 0.24
49 289 0.12
50 24 0.01
51 21 0.01
52 609 0.26
53 2 0.00
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (45 bp):
TGGCACTTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACAT
Found at i:706436 original size:91 final size:93
Alignment explanation
Indices: 706267--709115 Score: 2505
Period size: 91 Copynumber: 30.0 Consensus size: 93
706257 CACAAGTTGG
* * * *
706267 TGGCATCTTCTTTTAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAG
1 TGGCA-CTTC-TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTTTAAG
* * * *
706332 ACCAATGTTGCTGGCCTTGAATCAGCACAT
64 TCCAATATCGCTGGCCTTGAATCAGCATAT
* * * *
706362 TGGCAC-T-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGAC
1 TGGCACTTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTTTAAGTC
* *
706425 CAATGTCGCTGGCCTTGAATCAGCACAT
66 CAATATCGCTGGCCTTGAATCAGCATAT
* * * *
706453 TGGCAC-T-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGAC
1 TGGCACTTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTTTAAGTC
* * *
706516 CAATGTCGCTGACCTTGAATCAGCACAT
66 CAATATCGCTGGCCTTGAATCAGCATAT
* * * * *
706544 TGGCAC--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCGCCTTTGTCATCTTTA
1 TGGCACTTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TTG---TCTTTA
* * * * **
706607 AGACCAATGTCGCTAGCCTTGAATCAACACCT
62 AGTCCAATATCGCTGGCCTTGAATCAGCATAT
* * * * *
706639 TGGCAC--CTTTAAGTCCAATATCACTGGCCTTGAATAAGCATATTGGCACCTTTGTCATCTTTA
1 TGGCACTTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TTG---TCTTTA
706702 AGTCCAATATCGCTGGCCTTGAATCAGCATAT
62 AGTCCAATATCGCTGGCCTTGAATCAGCATAT
706734 TGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C---T-TTTAA
1 TGGCA-C-T-TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTTTAA
706794 GTCCAATATCGCTGGCCTTGAATCAGCATAT
63 GTCCAATATCGCTGGCCTTGAATCAGCATAT
* *
706825 TGGCACCTTGTCTTTAAGACCAATTTCACTGGCCTTGAATCAGCACATTGGCA-C----CTTTAA
1 TGGCA-C-T-TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTTTAA
706885 GTCCAATATCGCTGGCCTTGAATCAGCATAT
63 GTCCAATATCGCTGGCCTTGAATCAGCATAT
*
706916 TGGCACCTTTGTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAACACATTGGCA-C----CT
1 TGGCA-C----T--TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCT
* *
706976 TTAAGTCCAATATCACTGGCCTTGAATCAGCACAT
59 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
* * *
707011 TGGCACCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCT
1 TGGCA-C----T--TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCT
* * *
707076 TTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
59 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
* * * * * * *
707111 TGGCAC--ATTTAAGTCCATTATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCGTTAAGAC
1 TGGCACTTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTTTAAGTC
* *
707174 CAATTTCGCTGGCCTTGAATCAGCACAT
66 CAATATCGCTGGCCTTGAATCAGCATAT
* * *
707202 TGGCAC--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTA
1 TGGCACTTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TTG---TCTTTA
* *
707265 A-TACCAATGTCGCTGGCCTTGAATCAGCACAT
62 AGT-CCAATATCGCTGGCCTTGAATCAGCATAT
* * * * *
707297 TGGCAC--CTTTAAGTCCAATATCGCTGGCCTTCG-ACCAGCATATTGGCGCCTTTGTCATCTTT
1 TGGCACTTCTTTAAGACCAATGTCGCTGGCCTT-GAATCAGCACATTGGCACC-TTG---TCTTT
* * * * *
707359 AAGACAAATGTCGCTGGCCTTAAATCAGCACAT
61 AAGTCCAATATCGCTGGCCTTGAATCAGCATAT
*
707392 TAGCACCTTCATCATTAAGACCAATGTCGCT-GCCTTGAATCAGCACATTGGCA-C----CTTTA
1 TGGCA-CTTC-T--TTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTTTA
*
707451 AG-CCTAATATCGCTGGCCTTGAATTAGCATAT
62 AGTCC-AATATCGCTGGCCTTGAATCAGCATAT
* * * *
707483 TGGCGCCTTTGACATCTTCAAGACCAATGTCGCCGGCCTTGAATCAGCACATTGGCACTTTCATC
1 TGGC-AC-TT--C-T-TT-AAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-GTC
* * * *
707548 CTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
58 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
* * * * *
707584 TGGCACCTTCATCTTTAAGTCAAATATCGCTAGCCTTGAATCAGCACATTGGCGCCTTTGTCATC
1 TGGCA-C-T--TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TTG---TC
* *
707649 TTTAAGTCTAATATCGCTGGCCTTGAATCAGCATGT
58 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
* *
707685 TGGCACCTTGTCTTCAAGACCAATGTCGCTGGCCTTGAATCAGCACGTTGGCA-C---T-TTTAA
1 TGGCA-C-T-TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTTTAA
*
707745 GTCCAATGTCGCTGGCCTTGAATCAGCATAT
63 GTCCAATATCGCTGGCCTTGAATCAGCATAT
*
707776 TGGCACCTTGTCTTTAAGACCAATGTGGCTGGCCTTGAATCAGCACATTGGCA-C----CTTTAA
1 TGGCA-C-T-TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTTTAA
707836 GTCCAATATCGCTGGCCTTGAATCAGCATAT
63 GTCCAATATCGCTGGCCTTGAATCAGCATAT
* * * *
707867 TGGCGCCTTTGTCATCTTTAAGACCAATGCCGCTGGCCCTGAATCAACACATTGGCA-C----CT
1 TGGC-AC----T--TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCT
* *
707927 TTAAGTCCAATATCGCTGGCCTTCAACCAGCATAT
59 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
* * * * *
707962 TGGCGCCTTTGTCATCTTTAAGACCAATGTCACTAGCCTTGAATCAGCATATTGGCACCTTCATC
1 TGGC-AC----T--TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-GTC
* * * *
708027 TTTAAGACCAATGTCGTTGGCCTTGAATCAGCACAT
58 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
* * * * *
708063 TGGCAC--CTTTAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGGCGCCTTTGTCATCTTCA
1 TGGCACTTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TTGTC-T-TT-A
* * *
708126 AGACCAATGTCGCTGGCCTTGAATCAGCACAT
62 AGTCCAATATCGCTGGCCTTGAATCAGCATAT
* * *
708158 TGGCACTTTCATCCTTAAGAACAATGTCGCCT-GCCTTGAATAAGCACATTGGCACCTTCATCTT
1 TGGCAC-TTC-T--TTAAGACCAATGTCG-CTGGCCTTGAATCAGCACATTGGCACCTT-GTCTT
708222 TAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
60 TAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
* * * * *
708256 TGGCGCCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCT
1 TGGC-AC----T--TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCT
* * *
708321 TTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
59 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
* * * * * *
708356 TGGCAC--CTTTAAGTCCAATATCGCTGGCCTTCAATCAGTATATTGGCACCTTGTCTTTAAGAC
1 TGGCACTTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTTTAAGTC
* * *
708419 CAATGTTGCTGGCCTTGAATCAGCACAT
66 CAATATCGCTGGCCTTGAATCAGCATAT
* * *
708447 TGGCAC--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCGCATTGGCACCTTTGTCATCTTTA
1 TGGCACTTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TTG---TCTTTA
708510 AGTCCAATATCGCTGGCCTTGAATCAGCATAT
62 AGTCCAATATCGCTGGCCTTGAATCAGCATAT
* *
708542 TGGCACCTTGTCTTTAAGACCAATGTCGCTGGCTTTGACTCAGCACATTGGCA-C---T-TTTAA
1 TGGCA-C-T-TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTTTAA
*
708602 GTCCAATATCGCTGGCCTTGAATCACCATAT
63 GTCCAATATCGCTGGCCTTGAATCAGCATAT
* *
708633 TGGCACCTTGTCTTTAAGACTAATGTCGCTGGCCTTGAATCATCACATTGGCA-C----CTTTAA
1 TGGCA-C-T-TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTTTAA
708693 GTCCAATATCGCTGGCCTTGAATCAGCATAT
63 GTCCAATATCGCTGGCCTTGAATCAGCATAT
*
708724 TGGCACCTTGTCTTTAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCA-C----CTTTAA
1 TGGCA-C-T-TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTTTAA
708784 GTCCAATATCGCTGGCCTTGAATCAGCATAT
63 GTCCAATATCGCTGGCCTTGAATCAGCATAT
* *
708815 TGGCGCCTTTGTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAACACATTGGCA-C----CT
1 TGGC-AC----T--TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCT
708875 TTAAGTCCAATATCAG-TGGCCTTGAATCAGCATAT
59 TTAAGTCCAATATC-GCTGGCCTTGAATCAGCATAT
* *
708910 TGGCACCTTTGTCATCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 TGGCA-C----T--TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-GTC
708975 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
58 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
* * *
709011 TGAAGC-CTTTGTCGTCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTTAT
1 TG--GCAC----T--TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TTGT
* *
709075 CTTTAAATCCAATATCACTGGCCTTGAATCAGCATAT
57 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
709112 TGGC
1 TGGC
709116 GTCTTCGTCA
Statistics
Matches: 2446, Mismatches: 195, Indels: 222
0.85 0.07 0.08
Matches are distributed among these distances:
90 1 0.00
91 977 0.40
92 54 0.02
93 6 0.00
94 23 0.01
95 738 0.30
96 8 0.00
98 69 0.03
99 18 0.01
100 214 0.09
101 325 0.13
102 7 0.00
103 4 0.00
104 2 0.00
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (93 bp):
TGGCACTTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTGTCTTTAAGTC
CAATATCGCTGGCCTTGAATCAGCATAT
Found at i:706973 original size:329 final size:329
Alignment explanation
Indices: 706278--709115 Score: 2959
Period size: 329 Copynumber: 8.6 Consensus size: 329
706268 GGCATCTTCT
* * * * * *
706278 TTTAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTTGC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA-C----CTTTAAGTCCAATATCGC
*
706343 TGGCCTTGAATCAGCACATTGGCA-------C-T-TTTAAGTCCAATATCGCTGGCCTTGAATCA
61 TGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCA
706399 GCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTTA
126 GCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTTA
*
706464 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGAC
191 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGC
* *
706529 CTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCGCC
256 CTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
706594 TTTGTCATC
321 TTTGTCATC
* * * * *
706603 TTTAAGACCAATGTCGCTAGCCTTGAATCAACACCTTGGCACCTTTAAGTCCAATATCACTGGCC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCC
*
706668 TTGAATAAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
66 TTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
706733 TTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTTAAGTCC
131 TTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTTAAGTCC
* *
706798 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATTTCACTGGCCTTGA
196 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGA
706863 ATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGT
261 ATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGT
706928 CATC
326 CATC
* * *
706932 TTTAAGACCAATGTCGCTGGCCTTGAATCAACACATTGGCACCTTTAAGTCCAATATCACTGGCC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCC
*
706997 TTGAATCAGCACATTGGCACCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
66 TTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
*
707062 TTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACATTTAAGTCC
131 TTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTTAAGTCC
* * *
707127 ATTATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCGTTAAGACCAATTTCGCTGGCCTTGA
196 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGA
707192 ATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGT
261 ATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGT
707257 CATC
326 CATC
* *
707261 TTTAATACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCC
* * * * * * *
707326 TTCG-ACCAGCATATTGGCGCCTTTGTCATCTTTAAGACAAATGTCGCTGGCCTTAAATCAGCAC
66 TT-GAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAT
* * * *
707390 ATTAGCACCTTCATCATTAAGACCAATGTCGCT-GCCTTGAATCAGCACATTGGCACCTTTAAG-
130 ATTGGCACCTT-GTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTTAAGT
* * * *
707453 CCTAATATCGCTGGCCTTGAATTAGCATATTGGCGCCTTTGACATCTTCAAGACCAATGTCGCCG
194 CC-AATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTG---TCTTTAAGACCAATGTCGCTG
* * *
707518 GCCTTGAATCAGCACATTGGCACTTTCATCCTTAAGACCAATGTCGCTGGCCTTGAATCAGCACA
254 GCCTTGAATCAGCACATTGGCAC---C-T--TTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
707583 TTGGCACC--T-TCATC
313 TTGGCACCTTTGTCATC
* * * * *
707597 TTTAAGTCAAATATCGCTAGCCTTGAATCAGCACATTGGCGCCTTTGTCATCTTTAAGTCTAATA
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCACATT---G-----G-CACCTTTAAGTCCAATA
* * * *
707662 TCGCTGGCCTTGAATCAGCATGTTGGCACC-TTG---TCTTCAAGACCAATGTCGCTGGCCTTGA
57 TCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGA
** * *
707723 ATCAGCACGTTGGCA-C---T-TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACC
122 ATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C
* * * * *
707783 TTGTCTTTAAGACCAATGTGGCTGGCCTTGAATCAGCACATTGGCA-C----CTTTAAGTCCAAT
186 ---T-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAT
* * * * ** *
707843 ATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGACCAATGCCGCTGGCCCTG
247 GTCGCTGGCCTTGAATCAGCACATT---G-----G-CACCTTTAAGTCCAATATCGCTGGCCTTG
* *
707908 AATCAACACATTGGCA-------C--C
303 AATCAGCATATTGGCACCTTTGTCATC
* * * * * * *
707926 TTTAAGTCCAATATCGCTGGCCTTCAACCAGCATATTGGCGCCTTTGTCATCTTTAAGACCAATG
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCACATT---G-----G-CACCTTTAAGTCCAATA
* * * * *
707991 TCACTAGCCTTGAATCAGCATATTGGCACC--T-TCATCTTTAAGACCAATGTCGTTGGCCTTGA
57 TCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGA
* * * * * *
708053 ATCAGCACATTGGCA-C----CTTTAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGGCGCC
122 ATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGC-AC
* * * * * *
708113 TTTGTCATCTTCAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTCATCCTTAAGA
186 ----T--T-TT-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAGA
* *
708178 ACAATGTCGCCT-GCCTTGAATAAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCC
242 CCAATGTCG-CTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATCGCTGGCC
*
708242 TTGAATCAGCATATTGGCGCCTTTGTCATC
300 TTGAATCAGCATATTGGCACCTTTGTCATC
* * * *
708272 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGACCAATGTCGC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA-C----CTTTAAGTCCAATATCGC
* *
708337 TGGCCTTGAATCAGCACATTGGCA-------C--CTTTAAGTCCAATATCGCTGGCCTTCAATCA
61 TGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCA
* * *
708393 GTATATTGGCACCTTGTCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTTA
126 GCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTTA
** * *
708458 AGTCCAATATCGCTGGCCTTGAATCAGCGCATTGGCACCTTTGTCATCTTTAAGTCCAATATCGC
191 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTG---TCTTTAAGACCAATGTCGC
* * * * * *
708523 TGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCTTTGACTCAGCAC
252 TGGCCTTGAATCAGCACATTGGCA-C----CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAT
708588 ATTGGCA-------C-T-
312 ATTGGCACCTTTGTCATC
* * * * * *
708597 TTTAAGTCCAATATCGCTGGCCTTGAATCACCATATTGGCACCTTGTCTTTAAGACTAATGTCGC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA-C----CTTTAAGTCCAATATCGC
* *
708662 TGGCCTTGAATCATCACATTGGCA-------C--CTTTAAGTCCAATATCGCTGGCCTTGAATCA
61 TGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCA
* *
708718 GCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTTA
126 GCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTTA
*
708783 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGACCAATGTCGC
191 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTG---TCTTTAAGACCAATGTCGC
*
708848 TGGCCTTGAATCAACACATTGGCACCTTTAAGTCCAATATCAG-TGGCCTTGAATCAGCATATTG
252 TGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATC-GCTGGCCTTGAATCAGCATATTG
708912 GCACCTTTGTCATC
316 GCACCTTTGTCATC
* *
708926 TTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCG
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATCG
* * * *
708991 CTGGCCTTGAATCAGCATATT-GAAGCCTTTGTCGTCTTTAAGTCCAATGTCGTTGGCCTTGAAT
60 CTGGCCTTGAATCAGCATATTGGCA-CCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAAT
* * * * *
709055 CAGCACATTGGCACCTTTATCTTTAA-ATCCAATATCACTGGCCTTGAATCAGCATATTGGC
124 CAGCATATTGGCACC-TTGTCTTTAAGA-CCAATGTCGCTGGCCTTGAATCAGCACATTGGC
709116 GTCTTCGTCA
Statistics
Matches: 2194, Mismatches: 198, Indels: 227
0.84 0.08 0.09
Matches are distributed among these distances:
320 71 0.03
321 1 0.00
324 2 0.00
325 294 0.13
326 1 0.00
327 3 0.00
328 5 0.00
329 859 0.39
330 136 0.06
331 7 0.00
332 73 0.03
333 46 0.02
334 77 0.04
335 88 0.04
336 96 0.04
337 44 0.02
338 3 0.00
339 82 0.04
340 71 0.03
341 111 0.05
342 41 0.02
343 1 0.00
344 6 0.00
345 40 0.02
346 36 0.02
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (329 bp):
TTTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCC
TTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
TTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACTTTTAAGTCC
AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGA
ATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGT
CATC
Found at i:706976 original size:21 final size:21
Alignment explanation
Indices: 706952--707019 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
706942 ATGTCGCTGG
706952 CCTTGAATCAACACATTGGCA
1 CCTTGAATCAACACATTGGCA
* * *
706973 CCTTTAAGTCCAATATCACTGG--
1 CCTTGAA-T-CAACA-CATTGGCA
*
706995 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAACACATTGGCA
707016 CCTT
1 CCTT
707020 TGTCATCTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 10
0.67 0.13 0.19
Matches are distributed among these distances:
19 5 0.14
20 3 0.09
21 11 0.31
22 7 0.20
23 4 0.11
24 5 0.14
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (21 bp):
CCTTGAATCAACACATTGGCA
Found at i:708875 original size:21 final size:21
Alignment explanation
Indices: 708851--708918 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
708841 ATGTCGCTGG
708851 CCTTGAATCAACACATTGGCA
1 CCTTGAATCAACACATTGGCA
* * *
708872 CCTTTAAGTCCAATATCAGTGG--
1 CCTTGAA-T-CAACA-CATTGGCA
* *
708894 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAACACATTGGCA
708915 CCTT
1 CCTT
708919 TGTCATCTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
19 4 0.12
20 3 0.09
21 11 0.32
22 7 0.21
23 4 0.12
24 5 0.15
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (21 bp):
CCTTGAATCAACACATTGGCA
Found at i:709217 original size:52 final size:50
Alignment explanation
Indices: 708873--709223 Score: 323
Period size: 52 Copynumber: 6.9 Consensus size: 50
708863 ACATTGGCAC
* *
708873 CTTTAAGTCCAATATCAG-TGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
1 CTTTAAGTCCAATATC-GCTGGCCTTGAATCAGCACATTGGCATC-TT-TCAT
* * * *
708925 CTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCA-CCTTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCATCTTTCAT
* * *
708974 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGAAGCCT-TTGTCGT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTG--GCATCTT-TCAT
* * *
709026 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTT-AT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCATCTTTCAT
* * * *
709075 CTTTAAATCCAATATCACTGGCCTTGAATCAGCATATTGGCGTCTTCGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCATCTT--TCAT
** * * * **
709127 CTTTAAAACCTAATTTCGTTGGCCTCGAATCAATACATTGGCATTCTTCTCAT
1 CTTTAAGTCC-AATATCGCTGGCCTTGAATCAGCACATTGGCA-TCTT-TCAT
* * * * *
709180 CTTCAAGTCTAATATCGCTGACCATGAATCAGCACATTGACATC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCATC
709224 CTTTTTCTCA
Statistics
Matches: 241, Mismatches: 47, Indels: 23
0.77 0.15 0.07
Matches are distributed among these distances:
49 79 0.33
50 4 0.02
51 10 0.04
52 110 0.46
53 34 0.14
54 4 0.02
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (50 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCATCTTTCAT
Found at i:709874 original size:21 final size:21
Alignment explanation
Indices: 709849--709902 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
709839 TTTTTGTCTA
709849 AATGTATCGATACATTGCTAG
1 AATGTATCGATACATTGCTAG
709870 AATGTATCGATACATTGCTAG
1 AATGTATCGATACATTGCTAG
709891 AATGTATCGATA
1 AATGTATCGATA
709903 AAAGGTCCCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (21 bp):
AATGTATCGATACATTGCTAG
Found at i:714808 original size:14 final size:13
Alignment explanation
Indices: 714780--714807 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
714770 TAGGGGAAAA
714780 TTGAAAGAATTTT
1 TTGAAAGAATTTT
714793 TTGAAAGAATTTT
1 TTGAAAGAATTTT
714806 TT
1 TT
714808 TTTCATTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (13 bp):
TTGAAAGAATTTT
Found at i:721921 original size:20 final size:21
Alignment explanation
Indices: 721853--721923 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 21
721843 TCCGTACATG
* * *
721853 TATCGATACATT-AAAGAATG
1 TATCGATACATTGCAAGCATA
*
721873 TATCGATACATTGCAAGCATG
1 TATCGATACATTGCAAGCATA
* * *
721894 TATTGATATATT-CATGCATA
1 TATCGATACATTGCAAGCATA
721914 TATCGATACA
1 TATCGATACA
721924 ATTTTTTCAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 26 0.62
21 16 0.38
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (21 bp):
TATCGATACATTGCAAGCATA
Found at i:722000 original size:20 final size:21
Alignment explanation
Indices: 721963--722014 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
721953 AGAGGGTTCA
721963 GTATCGATACACACACTT-AT
1 GTATCGATACACACACTTGAT
* *
721983 GTATCGATACATTA-ACTTGTT
1 GTATCGATACA-CACACTTGAT
722004 GTATCGATACA
1 GTATCGATACA
722015 AATTGTAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (21 bp):
GTATCGATACACACACTTGAT
Found at i:723454 original size:23 final size:23
Alignment explanation
Indices: 723428--723490 Score: 80
Period size: 21 Copynumber: 2.9 Consensus size: 23
723418 ATGTTTAAGG
723428 ATGTATTGATACATTTAGGCC-AA
1 ATGTATTGATACATTT-GGCCAAA
723451 ATGTATTGAT--ATTTGGCCAAA
1 ATGTATTGATACATTTGGCCAAA
*
723472 ATGTATTAATACA-TTGGCC
1 ATGTATTGATACATTTGGCC
723491 TATCTATCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
20 4 0.11
21 15 0.42
22 6 0.17
23 11 0.31
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (23 bp):
ATGTATTGATACATTTGGCCAAA
Found at i:724923 original size:228 final size:228
Alignment explanation
Indices: 724524--724961 Score: 813
Period size: 228 Copynumber: 1.9 Consensus size: 228
724514 TCCCTTTGCA
* *
724524 AATTGAATAAATAATATATTTTGATAAGGGCCTAATTGTGGTTATTTGGATGGGTACCAAGATTT
1 AATTGAATAAATAATATATTCTAATAAGGGCCTAATTGTGGTTATTTGGATGGGTACCAAGATTT
724589 GTGCTAAAATTATCTTTTTCTCTTCCAATAGCTAAAATATAAACCACTTGACCATTTCTTAAAAG
66 GTGCTAAAATTATCTTTTTCTCTTCCAATAGCTAAAATATAAACCACTTGACCATTTCTTAAAAG
*
724654 TTACTTATATCAATAGTGATTAAGCAACATTGCCCCTTACTCAGAAAAACTCCTTTGAGTATTCT
131 TTACTTATATCAATAGTGATTAAGCAACATTGCCACTTACTCAGAAAAACTCCTTTGAGTATTCT
724719 TTTCTACCTTTCAAACTCCTTTGATTAAGCAAC
196 TTTCTACCTTTCAAACTCCTTTGATTAAGCAAC
724752 AATTGAATAAATAATATATTCTAATAAGGGCCTAATTGTGGTTATTTGGATGGGTACCAAGATTT
1 AATTGAATAAATAATATATTCTAATAAGGGCCTAATTGTGGTTATTTGGATGGGTACCAAGATTT
* *
724817 GTGCTAAAATTATCTTTTTCTCTTCCAATAGCTAAAATATAAGCCACTTGACCATTTCTTAGAAG
66 GTGCTAAAATTATCTTTTTCTCTTCCAATAGCTAAAATATAAACCACTTGACCATTTCTTAAAAG
* *
724882 TTGCTTATATCAATTGTGATTAAGCAACATTGCCACTTACTCAGAAAAACTCCTTTGAGTATTCT
131 TTACTTATATCAATAGTGATTAAGCAACATTGCCACTTACTCAGAAAAACTCCTTTGAGTATTCT
724947 TTTCTACCTTTCAAA
196 TTTCTACCTTTCAAA
724962 TAACCTGTGG
Statistics
Matches: 203, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
228 203 1.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (228 bp):
AATTGAATAAATAATATATTCTAATAAGGGCCTAATTGTGGTTATTTGGATGGGTACCAAGATTT
GTGCTAAAATTATCTTTTTCTCTTCCAATAGCTAAAATATAAACCACTTGACCATTTCTTAAAAG
TTACTTATATCAATAGTGATTAAGCAACATTGCCACTTACTCAGAAAAACTCCTTTGAGTATTCT
TTTCTACCTTTCAAACTCCTTTGATTAAGCAAC
Found at i:725157 original size:23 final size:24
Alignment explanation
Indices: 725122--725170 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
725112 TAGGGCACAT
725122 AAAAACAAGAAAG-GCAAAA-GAAA
1 AAAAACAAGAAAGTG-AAAATGAAA
725145 AAAAAC-AGCAAAGTGAAAATGAAA
1 AAAAACAAG-AAAGTGAAAATGAAA
725169 AA
1 AA
725171 TTAAATGCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
22 2 0.09
23 14 0.61
24 7 0.30
ACGTcount: A:0.71, C:0.08, G:0.16, T:0.04
Consensus pattern (24 bp):
AAAAACAAGAAAGTGAAAATGAAA
Done.