Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold195
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1914327
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.29
Warning! 179916 characters in sequence are not A, C, G, or T
File 7 of 12
Found at i:875874 original size:18 final size:18
Alignment explanation
Indices: 875851--875888 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
875841 TCTGCCACGC
875851 TTGTACAACAATACTTAT
1 TTGTACAACAATACTTAT
875869 TTGTACAACAATACTTAT
1 TTGTACAACAATACTTAT
875887 TT
1 TT
875889 ATCACATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (18 bp):
TTGTACAACAATACTTAT
Found at i:880298 original size:8 final size:8
Alignment explanation
Indices: 880285--880310 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
880275 ATTTGATTAA
880285 ATTTTGTG
1 ATTTTGTG
880293 ATTTTGTG
1 ATTTTGTG
880301 ATTTTGTG
1 ATTTTGTG
880309 AT
1 AT
880311 GAATGATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:880522 original size:13 final size:13
Alignment explanation
Indices: 880504--880528 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
880494 CAGCATTCTC
880504 TGTATCGATACAG
1 TGTATCGATACAG
880517 TGTATCGATACA
1 TGTATCGATACA
880529 AAGGGTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:883104 original size:32 final size:33
Alignment explanation
Indices: 883063--883124 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
883053 CTTAACTGTT
*
883063 TGTATCGATACA--CACAAGATGTATCGATATAA
1 TGTATCGATACATCCA-AAAATGTATCGATATAA
883095 TGTATCGATACATCCAAAAATGTATCGATA
1 TGTATCGATACATCCAAAAATGTATCGATA
883125 CATTGGCTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 12 0.44
33 13 0.48
34 2 0.07
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (33 bp):
TGTATCGATACATCCAAAAATGTATCGATATAA
Found at i:884971 original size:51 final size:52
Alignment explanation
Indices: 884853--884990 Score: 188
Period size: 51 Copynumber: 2.7 Consensus size: 52
884843 ATAGCCTGCG
* *
884853 TGTATCGATACATTGAAGAAGGTATCGATACATTTAGGTCAAAAACCCAGAA
1 TGTATCGATACAATGAAGAACGTATCGATACATTTAGGTCAAAAACCCAGAA
* * * * *
884905 TGTATCGATACAATGAAGAATGTATCAATATATTTGGGTC-AAAACCTAGAA
1 TGTATCGATACAATGAAGAACGTATCGATACATTTAGGTCAAAAACCCAGAA
* *
884956 TGTATCGATATAATGAAAAACGTATCGATACATTT
1 TGTATCGATACAATGAAGAACGTATCGATACATTT
884991 TCATTCCAAA
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
51 40 0.53
52 35 0.47
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACAATGAAGAACGTATCGATACATTTAGGTCAAAAACCCAGAA
Found at i:885769 original size:58 final size:58
Alignment explanation
Indices: 885622--885770 Score: 208
Period size: 58 Copynumber: 2.6 Consensus size: 58
885612 TCATGGAAAG
* * *
885622 TGACTTAAAAATGCATGAAATGACATAAAAAACCCTACGTCATGGAAAATTACTAAAA
1 TGACATAAAAATGCATGAAATGACATAAAAATCCCTACGTCATGGAAAATGACTAAAA
* * ** *
885680 TGGCATAAAAATGCATAAAATGACATAAAAATCCCTATTTTATGGAAAATGACTAAAA
1 TGACATAAAAATGCATGAAATGACATAAAAATCCCTACGTCATGGAAAATGACTAAAA
* *
885738 TGACATAAATATGCATGAAATGACACAAAAATC
1 TGACATAAAAATGCATGAAATGACATAAAAATC
885771 GTTAATATGC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
58 79 1.00
ACGTcount: A:0.50, C:0.14, G:0.12, T:0.23
Consensus pattern (58 bp):
TGACATAAAAATGCATGAAATGACATAAAAATCCCTACGTCATGGAAAATGACTAAAA
Found at i:888805 original size:238 final size:237
Alignment explanation
Indices: 888474--888943 Score: 850
Period size: 237 Copynumber: 2.0 Consensus size: 237
888464 GATTTAGGAA
888474 CACATTGCACTCCTCTTTGATCATGGTTTTAAGTTGATAATTAAGCCTCATTCACTAAAGGAAGA
1 CACATTGCACTCCTCTTTGATCATGGTTTTAAGTTGATAATTAAGCCTCATTCACTAAAGGAAGA
*
888539 TTAATACTTATAGAATCCAAAGGCCAAACATTTCCAACTAGGCTTACAAGACAAGATTTTTCCTA
66 TTAATACTTATAGAATCCAAAGGCCAAACATTTCCAACTAGGCTTACAAG-CAAGATTTTGCCTA
* *
888604 GAAGCCTGCTAACATTATTGATTTTAGGCCAATTTAAAGTTACATTAAACCCGATGTCTACTTCT
130 GAAGCCTGCCAACATTATTGATTTTAGGCCAATTTAAAGTTACATTAAACCCGATATCTACTTCT
888669 TCCACCTCTTCATCATGCATACCCTGTTATAACCCTTTGATTG
195 TCCACCTCTTCATCATGCATACCCTGTTATAACCCTTTGATTG
* *
888712 CACATTGCACTCTTCTTTGATCATGGTTTTGAGTTGATAATTAAGCCTCATTCACTAAAGGAAGA
1 CACATTGCACTCCTCTTTGATCATGGTTTTAAGTTGATAATTAAGCCTCATTCACTAAAGGAAGA
* *
888777 TTAATACTTATAGAATCCAAATGCCAAACATTTCCAACTGGGCTTACAAGCAAGATTTTGCCTAG
66 TTAATACTTATAGAATCCAAAGGCCAAACATTTCCAACTAGGCTTACAAGCAAGATTTTGCCTAG
*
888842 AGGCCTGCCAACATTATTGATTTTAGGCCAATTTAAAGTTACATTAAACCCGATATCTACTTCTT
131 AAGCCTGCCAACATTATTGATTTTAGGCCAATTTAAAGTTACATTAAACCCGATATCTACTTCTT
*
888907 CCACTTCTTCATCATGCATACCCTGTTATAACCCTTT
196 CCACCTCTTCATCATGCATACCCTGTTATAACCCTTT
888944 TTCATTTCTC
Statistics
Matches: 223, Mismatches: 9, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
237 112 0.50
238 111 0.50
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.34
Consensus pattern (237 bp):
CACATTGCACTCCTCTTTGATCATGGTTTTAAGTTGATAATTAAGCCTCATTCACTAAAGGAAGA
TTAATACTTATAGAATCCAAAGGCCAAACATTTCCAACTAGGCTTACAAGCAAGATTTTGCCTAG
AAGCCTGCCAACATTATTGATTTTAGGCCAATTTAAAGTTACATTAAACCCGATATCTACTTCTT
CCACCTCTTCATCATGCATACCCTGTTATAACCCTTTGATTG
Found at i:893826 original size:13 final size:13
Alignment explanation
Indices: 893808--893833 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
893798 CAAGGTGGTT
893808 TTGTATCGATACA
1 TTGTATCGATACA
893821 TTGTATCGATACA
1 TTGTATCGATACA
893834 AAACTTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:897374 original size:20 final size:20
Alignment explanation
Indices: 897332--897403 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
897322 ATTTGCCTGC
897332 ATGTATCGATACA--AAGATCA
1 ATGTATCGATACATTAAG-T-A
* *
897352 ATGCATCGATACATTGAGTA
1 ATGTATCGATACATTAAGTA
897372 ATGTATCGATACATTAAGTA
1 ATGTATCGATACATTAAGTA
897392 ATGTATCGATAC
1 ATGTATCGATAC
897404 TTTTCCTTGG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
20 43 0.93
21 1 0.02
22 2 0.04
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACATTAAGTA
Found at i:898180 original size:52 final size:50
Alignment explanation
Indices: 898104--898947 Score: 315
Period size: 49 Copynumber: 16.5 Consensus size: 50
898094 GCTAATATGC
* * * *
898104 GGCTAGCGATATTGGGCTTAAAGATGCGAAGAATGACAATGTGTTGATTCAT
1 GGCTAGCGACATTAGACTTAAAGAT--GAAGAATGACAATGTGTTGATTCAA
* *
898156 GGCTAGCGACATTAGACTTGAAGATGAAGAATGCCAATGTGTTGATTCAA
1 GGCTAGCGACATTAGACTTAAAGATGAAGAATGACAATGTGTTGATTCAA
* * * ** * * * *
898206 GGCCAACGACATTGGGTTTTAAAGATGACGAAGGTGCCAATATGTTGAGTCAA
1 GGCTAGCGACATT-AGACTTAAAGATGAAGAA--TGACAATGTGTTGATTCAA
* * * * * * *
898259 GGCCAGTGATATTGGTTTGACATTGGACTTAAAGATGACA-AAGGCGCCGATATGCTGATTCAA
1 GG-C-----TA---G--CGACATTAGACTTAAAGATGA-AGAA--TGACAATGTGTTGATTCAA
* * * * *
898322 GGCTAGCGATATTGGACTTAAAGATGAA-AGTGCCAATGTGCTGATTCAA
1 GGCTAGCGACATTAGACTTAAAGATGAAGAATGACAATGTGTTGATTCAA
* * * * * * *
898371 GGCCAACGACATTGGACTTAAA-ATTGGCAA-ACGTGCCAATATGCTGATTCAA
1 GGCTAGCGACATTAGACTTAAAGA-T-G-AAGA-ATGACAATGTGTTGATTCAA
* * * * * * *
898423 GGCCAACGATATTGGACTTAAAGATGAAG-GTGCCAATGTGCTGATTCAA
1 GGCTAGCGACATTAGACTTAAAGATGAAGAATGACAATGTGTTGATTCAA
* * * * * * * *
898472 GGCCAGCGACATTGGTCTTAAAGATGACGAAGGTGCCAATATGCTGGTTCAA
1 GGCTAGCGACATTAGACTTAAAGATGAAGAA--TGACAATGTGTTGATTCAA
* * * * * *
898524 GGCCAGCGATATTGGACTCAAAGATGAAG-GTGCCAATGTGTTGATTCAA
1 GGCTAGCGACATTAGACTTAAAGATGAAGAATGACAATGTGTTGATTCAA
* * * * * ** * *
898573 GGCCAACAACATTGGACTTAAAGATGACGAAAACACCAATATGCTGATTCAA
1 GGCTAGCGACATTAGACTTAAAGATGAAG-AATGA-CAATGTGTTGATTCAA
* * * * * * * * * *
898625 AGCTAGCGATACTGGGCTTAAAGATGAAG-GTGCCGATATGCTGATTCAA
1 GGCTAGCGACATTAGACTTAAAGATGAAGAATGACAATGTGTTGATTCAA
* * * * * * *
898674 GGCCAACGATATTGGACTTAAAGATGAAG-GTGCCAATGTGCTGATTCAA
1 GGCTAGCGACATTAGACTTAAAGATGAAGAATGACAATGTGTTGATTCAA
* * * * * * * *
898723 GGCCAGCGACATTGGTCTTAAAGATGACGAAGGTGCCAATATGCTGGTTCAA
1 GGCTAGCGACATTAGACTTAAAGATGAAGAA--TGACAATGTGTTGATTCAA
* * * * * *
898775 GGCCAGCGATATTGGACTCAAAGATGAAG-GTGCCAATGTGTTGATTCAA
1 GGCTAGCGACATTAGACTTAAAGATGAAGAATGACAATGTGTTGATTCAA
* * * * * ** * *
898824 GGCCAACAACATTGGACTTAAAGATGACGAAAACACCAATATGCTGATTCAA
1 GGCTAGCGACATTAGACTTAAAGATGAAG-AATGA-CAATGTGTTGATTCAA
* * * * * * * *
898876 AGCTAGCGATACTGGGCTTAAAGATGAAG-GTGCCGATGTGTTGATTCAA
1 GGCTAGCGACATTAGACTTAAAGATGAAGAATGACAATGTGTTGATTCAA
*
898925 GGC-AGCGACATTGGACTTAAAGA
1 GGCTAGCGACATTAGACTTAAAGA
898948 CAAGGTGCAA
Statistics
Matches: 631, Mismatches: 128, Indels: 70
0.76 0.15 0.08
Matches are distributed among these distances:
48 18 0.03
49 257 0.41
50 37 0.06
51 19 0.03
52 235 0.37
53 20 0.03
54 2 0.00
57 2 0.00
59 1 0.00
62 1 0.00
63 33 0.05
64 6 0.01
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (50 bp):
GGCTAGCGACATTAGACTTAAAGATGAAGAATGACAATGTGTTGATTCAA
Found at i:898456 original size:101 final size:101
Alignment explanation
Indices: 898277--898976 Score: 724
Period size: 101 Copynumber: 7.0 Consensus size: 101
898267 ATATTGGTTT
* * * *
898277 GACATTGGACTTAAAGATGACAAAGGCGCCGATATGCTGATTCAAGGCTAGCGATATTGGACTTA
1 GACATTGGACTTAAAGATGGCAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
*
898342 AAGATGAAAGTGCCAATGTGCTGATTCAAGGCCAAC
66 AAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAAC
* *
898378 GACATTGGACTTAAA-ATTGGCAAACGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT
1 GACATTGGACTTAAAGA-TGGCAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
898442 AAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGC
65 AAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAAC
* * * * *
898479 GACATTGGTCTTAAAGATGACGAAGGTGCCAATATGCTGGTTCAAGGCCAGCGATATTGGACTCA
1 GACATTGGACTTAAAGATGGCAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
*
898544 AAGATGAAGGTGCCAATGTGTTGATTCAAGGCCAAC
66 AAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAAC
* * *** * * * *
898580 AACATTGGACTTAAAGATGACGAAA-ACACCAATATGCTGATTCAAAGCTAGCGATACTGGGCTT
1 GACATTGGACTTAAAGATGGC-AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* *
898644 AAAGATGAAGGTGCCGATATGCTGATTCAAGGCCAAC
65 AAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAAC
* * * *
898681 GATATTGGACTTAAAGAT-G--AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA
1 GACATTGGACTTAAAGATGGCAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
898743 AAGATGACGAAGGTGCCAATATGCTGGTTCAAGGCCAGC
66 AAGAT---GAAGGTGCCAATGTGCTGATTCAAGGCCAAC
* * * * * * *
898782 GATATTGGACTCAAAGAT-G--AAGGTGCCAATGTGTTGATTCAAGGCCAACAACATTGGACTTA
1 GACATTGGACTTAAAGATGGCAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
**** * * * *
898844 AAGATGACGAAAACACCAATATGCTGATTCAAAGCTAGC
66 AAGAT---GAAGGTGCCAATGTGCTGATTCAAGGCCAAC
* * * * * * *
898883 GATACTGGGCTTAAAGAT-G--AAGGTGCCGATGTGTTGATTCAAGG-CAGCGACATTGGACTTA
1 GACATTGGACTTAAAGATGGCAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
898944 AAGA-CAAGGTGCAAATATGCTGATTCAAGGCCA
66 AAGATGAAGGTGCCAATGTGCTGATTCAAGGCCA
898977 GTGTATTGGG
Statistics
Matches: 519, Mismatches: 73, Indels: 19
0.85 0.12 0.03
Matches are distributed among these distances:
96 21 0.04
97 2 0.00
98 36 0.07
100 20 0.04
101 437 0.84
102 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (101 bp):
GACATTGGACTTAAAGATGGCAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
AAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAAC
Found at i:898726 original size:251 final size:252
Alignment explanation
Indices: 898105--898977 Score: 1080
Period size: 251 Copynumber: 3.4 Consensus size: 252
898095 CTAATATGCG
* * * * * * * * *
898105 GCTAGCGATATTGGGCTTAAAGATGCGAAGAATGACAATGTGTTGATTCATGGCTAGCGACATTA
1 GCTAGCGATACTGGGCTTAAAGATG-GAAG-GTGCCAATATGCTGATTCAAGGCCAACGACATTG
* * * * *
898170 GACTTGAAGATGAAGAATGCCAATGTGTTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGAC
64 GACTTAAAGATGAAG-GTGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGTCTTAAAGATGAC
* *
898235 GAAGGTGCCAATATGTTGAG-TCAAGGCCAGTGATATTGGTTTGACATTGGACTTAAAGATGACA
127 GAAGGTGCCAATATGCTG-GTTCAAGGCCAGCGATATT-G---GAC--T---C--AAAGATG---
* * * * * * * * *** *
898299 AAGGCGCCGATATGCTGATTCAAGGCTAGCGATATTGGACTTAAAGAT---GAAAGTGCCAATGT
177 AAGGTGCCAATGTGTTGATTCAAGGCCAACAACATTGGACTTAAAGATGACGAAAACACCAATAT
*
898361 GCTGATTCAAG
242 GCTGATTCAAA
* * * * * * *
898372 GCCAACGACATTGGACTTAAA-ATTGGCAAACGTGCCAATATGCTGATTCAAGGCCAACGATATT
1 GCTAGCGATACTGGGCTTAAAGA-TGG--AAGGTGCCAATATGCTGATTCAAGGCCAACGACATT
898436 GGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACG
63 GGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACG
898501 AAGGTGCCAATATGCTGGTTCAAGGCCAGCGATATTGGACTCAAAGATGAAGGTGCCAATGTGTT
128 AAGGTGCCAATATGCTGGTTCAAGGCCAGCGATATTGGACTCAAAGATGAAGGTGCCAATGTGTT
898566 GATTCAAGGCCAACAACATTGGACTTAAAGATGACGAAAACACCAATATGCTGATTCAAA
193 GATTCAAGGCCAACAACATTGGACTTAAAGATGACGAAAACACCAATATGCTGATTCAAA
* *
898626 GCTAGCGATACTGGGCTTAAAGAT-GAAGGTGCCGATATGCTGATTCAAGGCCAACGATATTGGA
1 GCTAGCGATACTGGGCTTAAAGATGGAAGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGA
898690 CTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGAAG
66 CTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGAAG
898755 GTGCCAATATGCTGGTTCAAGGCCAGCGATATTGGACTCAAAGATGAAGGTGCCAATGTGTTGAT
131 GTGCCAATATGCTGGTTCAAGGCCAGCGATATTGGACTCAAAGATGAAGGTGCCAATGTGTTGAT
898820 TCAAGGCCAACAACATTGGACTTAAAGATGACGAAAACACCAATATGCTGATTCAAA
196 TCAAGGCCAACAACATTGGACTTAAAGATGACGAAAACACCAATATGCTGATTCAAA
* * * *
898877 GCTAGCGATACTGGGCTTAAAGAT-GAAGGTGCCGATGTGTTGATTCAAGG-CAGCGACATTGGA
1 GCTAGCGATACTGGGCTTAAAGATGGAAGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGA
* * *
898940 CTTAAAGA-CAAGGTGCAAATATGCTGATTCAAGGCCAG
66 CTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAG
898978 TGTATTGGGC
Statistics
Matches: 550, Mismatches: 48, Indels: 34
0.87 0.08 0.05
Matches are distributed among these distances:
249 27 0.05
250 19 0.03
251 312 0.57
253 1 0.00
254 44 0.08
255 1 0.00
256 1 0.00
259 1 0.00
261 3 0.01
264 2 0.00
265 47 0.09
266 32 0.06
267 58 0.11
268 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (252 bp):
GCTAGCGATACTGGGCTTAAAGATGGAAGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGA
CTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGAAG
GTGCCAATATGCTGGTTCAAGGCCAGCGATATTGGACTCAAAGATGAAGGTGCCAATGTGTTGAT
TCAAGGCCAACAACATTGGACTTAAAGATGACGAAAACACCAATATGCTGATTCAAA
Found at i:899077 original size:28 final size:29
Alignment explanation
Indices: 899012--899117 Score: 110
Period size: 29 Copynumber: 3.7 Consensus size: 29
899002 CCCCAATTTG
899012 TGTGGGCTTTTGAAAGGGTTGCACCAACT
1 TGTGGGCTTTTGAAAGGGTTGCACCAACT
* * *
899041 TGTGTGCTTTTG-GA-GGTTGCCACTAACT
1 TGTGGGCTTTTGAAAGGGTTG-CACCAACT
** *
899069 TGTGGGC-TTTGAAAGGGGCGCCACCGACT
1 TGTGGGCTTTTGAAAGGGTTG-CACCAACT
899098 TGTGGGCTTTTGACAAGGGT
1 TGTGGGCTTTTGA-AAGGGT
899118 GCCACAGACT
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
27 9 0.15
28 15 0.24
29 28 0.45
30 5 0.08
31 5 0.08
ACGTcount: A:0.17, C:0.18, G:0.34, T:0.31
Consensus pattern (29 bp):
TGTGGGCTTTTGAAAGGGTTGCACCAACT
Found at i:899079 original size:27 final size:27
Alignment explanation
Indices: 899012--899078 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 27
899002 CCCCAATTTG
*
899012 TGTGGGCTTTTGAAAGGGTTGCACCAACT
1 TGTGGGCTTTTG-GA-GGTTGCACCAACT
* *
899041 TGTGTGCTTTTGGAGGTTGCCACTAACT
1 TGTGGGCTTTTGGAGGTTG-CACCAACT
899069 TGTGGGCTTT
1 TGTGGGCTTT
899079 GAAAGGGGCG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 5 0.15
28 17 0.52
29 11 0.33
ACGTcount: A:0.15, C:0.16, G:0.31, T:0.37
Consensus pattern (27 bp):
TGTGGGCTTTTGGAGGTTGCACCAACT
Found at i:899149 original size:57 final size:57
Alignment explanation
Indices: 899020--899176 Score: 128
Period size: 57 Copynumber: 2.8 Consensus size: 57
899010 TGTGTGGGCT
* * * * *
899020 TTTG-AAAGGGTTG-CACCAACTTGTGTGCTTTTGGAGGTTGCCACTAACTTGTGGGC
1 TTTGAAAAGGG-TGCCACCGACTTGTGGGCTTTTGAAGGGTGCCACTAACTTGTGGAC
* *
899076 TTTGAAAGGGGCGCCACCGACTTGTGGGCTTTTGACAAGGGTGCCAC-AGACTTGTGGAC
1 TTTGAAAAGGGTGCCACCGACTTGTGGGCTTTTG--AAGGGTGCCACTA-ACTTGTGGAC
* * * **
899135 -TT-AAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCAC
1 TTTGAAAAGGGTGCCACCGACTTGTGGGCTTTTGAAGGGTGCCAC
899177 GGAGTTGTGG
Statistics
Matches: 82, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
54 11 0.13
56 7 0.09
57 43 0.52
58 3 0.04
59 18 0.22
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.27
Consensus pattern (57 bp):
TTTGAAAAGGGTGCCACCGACTTGTGGGCTTTTGAAGGGTGCCACTAACTTGTGGAC
Found at i:899157 original size:27 final size:27
Alignment explanation
Indices: 899112--899221 Score: 139
Period size: 27 Copynumber: 3.9 Consensus size: 27
899102 GGCTTTTGAC
* *
899112 AAGGGTGCCACAGACTTGTGGACTTAA
1 AAGGGTGCCACGGAGTTGTGGACTTAA
899139 AAGGGTGCCACGGAGTTGTGGACTTAA
1 AAGGGTGCCACGGAGTTGTGGACTTAA
*
899166 AAGGGTGCCACGGAGTTGTGGGCTTTAA
1 AAGGGTGCCACGGAGTTGTGGAC-TTAA
* *
899194 AAGAGAGATGCCACTGAGTCGTGGACTT
1 AAG-G-G-TGCCACGGAGTTGTGGACTT
899222 TGAAAAGAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
27 47 0.64
28 7 0.10
29 1 0.01
30 3 0.04
31 15 0.21
ACGTcount: A:0.26, C:0.16, G:0.35, T:0.23
Consensus pattern (27 bp):
AAGGGTGCCACGGAGTTGTGGACTTAA
Found at i:899236 original size:30 final size:31
Alignment explanation
Indices: 899171--899486 Score: 335
Period size: 30 Copynumber: 10.3 Consensus size: 31
899161 CTTAAAAGGG
* * *
899171 TGCCACGGAGTTGTGGGCTTT-AAAAGAGAGA
1 TGCCACTGAGTCGTGGACTTTGAAAAGA-AGA
899202 TGCCACTGAGTCGTGGACTTTGAAAAGAA-A
1 TGCCACTGAGTCGTGGACTTTGAAAAGAAGA
* *
899232 TGCCACTAAGTCATGGACTTTGAAAAGAA-A
1 TGCCACTGAGTCGTGGACTTTGAAAAGAAGA
* *
899262 TGCCACTGAGTCGTGGATTTTGAAAA-AATA
1 TGCCACTGAGTCGTGGACTTTGAAAAGAAGA
* * *
899292 TGCCACTAAGTTGTGAACTTTGAAAAG-AGA
1 TGCCACTGAGTCGTGGACTTTGAAAAGAAGA
* *
899322 TGCCACTTAGTCGTGGACTTTGAAGAGAAAAGA
1 TGCCACTGAGTCGTGGACTTTGAA-A-AGAAGA
* * *
899355 CGCCACTGTGTTGTGGACTTTGAAGAA-AAGA
1 TGCCACTGAGTCGTGGACTTTGAA-AAGAAGA
* *
899386 TGCCACTAAGTCGTGGACTTTGGAAAG-AGA
1 TGCCACTGAGTCGTGGACTTTGAAAAGAAGA
* *
899416 TGCCACTAATTCGTGGACTTTGAAGAA-AAGA
1 TGCCACTGAGTCGTGGACTTTGAA-AAGAAGA
*
899447 TGCCACTGAGTCCTGGACTTTGAAGAA-AAGA
1 TGCCACTGAGTCGTGGACTTTGAA-AAGAAGA
899478 TGCCACTGA
1 TGCCACTGA
899487 CTTGTGGGCT
Statistics
Matches: 245, Mismatches: 31, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
29 2 0.01
30 125 0.51
31 85 0.35
32 8 0.03
33 25 0.10
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTGAAAAGAAGA
Found at i:900976 original size:24 final size:21
Alignment explanation
Indices: 900950--901020 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 21
900940 GTTGTTGTTG
900950 TTTTTGCTTGTTTGTTTATTTTT
1 TTTTTG-TTGTTTGTTT-TTTTT
* *
900973 GTTTTGTT-TATT-TTTTTTCT
1 TTTTTGTTGT-TTGTTTTTTTT
900993 TTTTTGTTTGTTTGTTTGTTTTT
1 TTTTTG-TTGTTTGTTT-TTTTT
901016 TTTTT
1 TTTTT
901021 CGGATGACGC
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
20 9 0.23
21 8 0.21
22 8 0.21
23 14 0.36
ACGTcount: A:0.03, C:0.03, G:0.13, T:0.82
Consensus pattern (21 bp):
TTTTTGTTGTTTGTTTTTTTT
Found at i:900981 original size:15 final size:14
Alignment explanation
Indices: 900960--901019 Score: 61
Period size: 14 Copynumber: 4.2 Consensus size: 14
900950 TTTTTGCTTG
900960 TTTGTTTATTTTTGT
1 TTTGTTTATTTTT-T
900975 TTTGTTTATTTTTT
1 TTTGTTTATTTTTT
*
900989 TTCT-TTT-TTGTTTG
1 TT-TGTTTATT-TTTT
*
901003 TTTGTTTGTTTTTT
1 TTTGTTTATTTTTT
901017 TTT
1 TTT
901020 TCGGATGACG
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
13 3 0.08
14 20 0.51
15 16 0.41
ACGTcount: A:0.03, C:0.02, G:0.12, T:0.83
Consensus pattern (14 bp):
TTTGTTTATTTTTT
Found at i:914935 original size:20 final size:18
Alignment explanation
Indices: 914910--914963 Score: 72
Period size: 20 Copynumber: 2.8 Consensus size: 18
914900 ATTTGCCTGC
914910 ATGTATCGATACAAAGATCA
1 ATGTATCGATACAAAG-T-A
914930 ATGTATCGATACATTAAGTA
1 ATGTATCGATACA--AAGTA
914950 ATGTATCGATACAA
1 ATGTATCGATACAA
914964 TGTATCGATA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
18 1 0.03
20 27 0.84
21 1 0.03
22 3 0.09
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.30
Consensus pattern (18 bp):
ATGTATCGATACAAAGTA
Found at i:914967 original size:13 final size:13
Alignment explanation
Indices: 914949--914974 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
914939 TACATTAAGT
914949 AATGTATCGATAC
1 AATGTATCGATAC
914962 AATGTATCGATAC
1 AATGTATCGATAC
914975 GTTGAGAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:914970 original size:33 final size:33
Alignment explanation
Indices: 914928--914995 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
914918 ATACAAAGAT
*
914928 CAATGTATCGATACATTAAGTAATGTATCGATA
1 CAATGTATCGATACATTAAGAAATGTATCGATA
* *
914961 CAATGTATCGATACGTTGAGAAATGTATCGATA
1 CAATGTATCGATACATTAAGAAATGTATCGATA
914994 CA
1 CA
914996 TTTCCTTGGC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (33 bp):
CAATGTATCGATACATTAAGAAATGTATCGATA
Found at i:917075 original size:20 final size:20
Alignment explanation
Indices: 917021--917075 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
917011 TTTCACAATT
* *
917021 TGTATCGATACATTGTTCAT
1 TGTATCGATACATTTTTCAA
*
917041 TGTATCAATACATTTTTCAA
1 TGTATCGATACATTTTTCAA
917061 TGTATCGATACATTT
1 TGTATCGATACATTT
917076 AGGCATTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.29, C:0.15, G:0.11, T:0.45
Consensus pattern (20 bp):
TGTATCGATACATTTTTCAA
Found at i:919507 original size:79 final size:77
Alignment explanation
Indices: 919372--920067 Score: 420
Period size: 79 Copynumber: 8.8 Consensus size: 77
919362 TTTTCATCTT
* * * * * * *
919372 GGGGATACTCTAACCCCGGTTTTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTCCAAT
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCGATTTTCCACAATCAGGGATACTCCAA-
**
919437 CCCACTATTTCTGA
65 CCCGTTATTT-TGA
*
919451 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTCCACAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCGATTTTCCACAATCAGGGATACTCCAAC
* *
919516 TCCAATTTTATTTTCA
66 -CC---GTTATTTTGA
* * * ** * ** * * *
919532 ----AAACACCAATTTTTCACAATCGG--GGA-TACTCCAACCCCG-TTATT--TC-ATCGGGGA
1 GGGGATACTCCAA-----C-C--CCGGTTTTATTTCTAAAACACCGATT-TTCCACAATCAGGGA
919586 TACTCCAACCTCGTTATTTTCGA
57 TACTCCAACC-CGTTATTTT-GA
* * **
919609 GGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTGA-TTTCTCACAATC-GAGGATACTCCA
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCGATTTTC-CACAATCAG-GGATACTCCA
*
919672 ACCCTGTTATTTTTGC
64 ACCC-GTTA-TTTTGA
* ** * * * * * *
919688 GGGGATACTCCAACCCCTGCCTTATCTCTAAAGCATCAATTTTCCACAATCGGGGAAACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCGATTTTCCACAATCAGGGATACTCCAA-
919753 CCCGTTATTTTTGA
65 CCCGTTA-TTTTGA
* * * *
919767 GGGGATACTCCAACCCAGATTTTATTT-TCAAAACACCGATTTTCTATAATCAGGGATACTCCAA
1 GGGGATACTCCAACCCCGGTTTTATTTCT-AAAACACCGATTTTCCACAATCAGGGATACTCCAA
*
919831 CCCTATTATTTTTGA
65 CCC-GTTA-TTTTGA
* * * *
919846 AGGGATACTCCAACCGCGATTTTATTT-TCAAAACACCGATTTTTCACAATC-GGAGATACTCCA
1 GGGGATACTCCAACCCCGGTTTTATTTCT-AAAACACCGATTTTCCACAATCAGG-GATACTCCA
919909 ACCCCGTTATTTTCGA
64 A-CCCGTTATTTT-GA
* *** * * * *
919925 GGGGATACTCCAACCCCGATTTTATTT-TCAAAATGTCGA-TTTCTTATAATCAGGGATTCCCCA
1 GGGGATACTCCAACCCCGGTTTTATTTCT-AAAACACCGATTTTC-CACAATCAGGGATACTCCA
*
919988 ACCTTGTTATTTTCGA
64 ACC-CGTTATTTT-GA
* * * *
920004 GGGGATACTCCAACCCCGATTTTATTTCTAGAACACCGATTTTTCATAATCAGGCGATACTCCA
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCGATTTTCCACAATCAGG-GATACTCCA
920068 GCCTCGTTGT
Statistics
Matches: 487, Mismatches: 86, Indels: 87
0.74 0.13 0.13
Matches are distributed among these distances:
73 3 0.01
75 4 0.01
76 15 0.03
77 8 0.02
78 20 0.04
79 376 0.77
80 29 0.06
81 11 0.02
82 16 0.03
83 2 0.00
85 3 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (77 bp):
GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCGATTTTCCACAATCAGGGATACTCCAAC
CCGTTATTTTGA
Found at i:919512 original size:51 final size:51
Alignment explanation
Indices: 919452--919570 Score: 177
Period size: 51 Copynumber: 2.3 Consensus size: 51
919442 TATTTCTGAG
*
919452 GGGATACTCCAACCCCGGTTTTA-TTTCTAAAACACCAATTTTCCACAATCA
1 GGGATACTCCAACCCCGATTTTATTTTC-AAAACACCAATTTTCCACAATCA
* * * *
919503 GGGATACTCCAACTCCAATTTTATTTTCAAAACACCAATTTTTCACAATCG
1 GGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCCACAATCA
919554 GGGATACTCCAACCCCG
1 GGGATACTCCAACCCCG
919571 TTATTTCATC
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
51 56 0.93
52 4 0.07
ACGTcount: A:0.31, C:0.29, G:0.11, T:0.29
Consensus pattern (51 bp):
GGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCCACAATCA
Found at i:919582 original size:28 final size:27
Alignment explanation
Indices: 919550--919626 Score: 111
Period size: 28 Copynumber: 2.8 Consensus size: 27
919540 ATTTTTCACA
919550 ATCGGGGATACTCCAACCCCGTTATTT
1 ATCGGGGATACTCCAACCCCGTTATTT
*
919577 CATCGGGGATACTCCAACCTCGTTATTT
1 -ATCGGGGATACTCCAACCCCGTTATTT
919605 -TCGAGGGGATACTCCAACCCCG
1 ATC--GGGGATACTCCAACCCCG
919627 GCTTTATTTC
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
26 2 0.04
28 43 0.96
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTATTT
Found at i:919633 original size:107 final size:107
Alignment explanation
Indices: 919503--919702 Score: 260
Period size: 107 Copynumber: 1.9 Consensus size: 107
919493 TCCACAATCA
* * * *
919503 GGGATACTCCAACTCCAATTTTATTT-TCAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
1 GGGATACTCCAACCCCAACTTTATTTCT-AAAACACCAATTTCTCACAATCGAGGATACTCCAAC
919567 CCCGTTATTTCAT-CGGGGATACTCCAACCTCGTTATTTTCGAG
65 CCCGTTATTT-ATGCGGGGATACTCCAACCTCGTTATTTTCGAG
** * ***
919610 GGGATACTCCAACCCCGGCTTTATTTCTAAAATATTGATTTCTCACAATCGAGGATACTCCAACC
1 GGGATACTCCAACCCCAACTTTATTTCTAAAACACCAATTTCTCACAATCGAGGATACTCCAACC
* *
919675 CTGTTATTTTTGCGGGGATACTCCAACC
66 CCGTTATTTATGCGGGGATACTCCAACC
919703 CCTGCCTTAT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
106 1 0.01
107 77 0.97
108 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (107 bp):
GGGATACTCCAACCCCAACTTTATTTCTAAAACACCAATTTCTCACAATCGAGGATACTCCAACC
CCGTTATTTATGCGGGGATACTCCAACCTCGTTATTTTCGAG
Found at i:919740 original size:158 final size:158
Alignment explanation
Indices: 919578--920067 Score: 560
Period size: 158 Copynumber: 3.1 Consensus size: 158
919568 CCGTTATTTC
* **
919578 ATCGGGGATACTCCAACCTCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTA-TTTCTAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTTC-AAAA
* * *
919642 TATTGATTTCTCACAATC-GAGGATACTCCAACCCTGTTATTTTTGCGGGGATACTCCAACCCCT
65 TATCGATTTCTCATAATCAG-GGATACTCCAACCCTGTTATTTTTGAGGGGATACTCCAACCCC-
* *
919706 G-CCTTA-TCTCTAAAGCATCAATTTTCCACA
128 GACCTTATTCTC-AAAACACCAATTTTCCACA
* * * *
919736 ATCGGGGAAACTCCAACCCCGTTATTTTTGAGGGGATACTCCAACCCAGATTTTATTTTCAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTTCAAAAT
* * * *
919801 ACCGATTT-TCTATAATCAGGGATACTCCAACCCTATTATTTTTGAAGGGATACTCCAACCGCGA
66 ATCGATTTCTC-ATAATCAGGGATACTCCAACCCTGTTATTTTTGAGGGGATACTCCAACCCCGA
** * * *
919865 TTTTATTTTCAAAACACCGATTTTTCACA
130 CCTTATTCTCAAAACACCAATTTTCCACA
*
919894 ATCGGAGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTTCAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTTCAAAAT
* * * * * * *
919959 GTCGATTTCTTATAATCAGGGATTCCCCAACCTTGTTATTTTCGAGGGGATACTCCAACCCCGAT
66 ATCGATTTCTCATAATCAGGGATACTCCAACCCTGTTATTTTTGAGGGGATACTCCAACCCCGAC
* * * * *
920024 TTTATT-TCTAGAACACCGATTTTTCATA
131 CTTATTCTC-AAAACACCAATTTTCCACA
*
920052 ATCAGGCGATACTCCA
1 ATC-GGGGATACTCCA
920068 GCCTCGTTGT
Statistics
Matches: 285, Mismatches: 39, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
157 5 0.02
158 260 0.91
159 20 0.07
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (158 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTTCAAAAT
ATCGATTTCTCATAATCAGGGATACTCCAACCCTGTTATTTTTGAGGGGATACTCCAACCCCGAC
CTTATTCTCAAAACACCAATTTTCCACA
Found at i:919825 original size:237 final size:237
Alignment explanation
Indices: 919582--920075 Score: 565
Period size: 237 Copynumber: 2.1 Consensus size: 237
919572 TATTTCATCG
* * * **
919582 GGGATACTCCAACCTCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTA-TTTCTAAAATATT
1 GGGATACTCCAACCTCGTTATTTTCGAAGGGATACTCCAACCCCGACTTTATTTTC-AAAACACC
* * *
919646 GATTTCTCACAATC-GAGGATACTCCAACCCTGTTATTTTTGCGGGGATACTCCAACCCCTG-CC
65 GATTTCTCACAATCGGA-GATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCC-GACC
* * * *
919709 TTA-TCTCTAAA-GCATCAATTT-TCCACAATCGGGGAAACTCCAACCCCGTTATTTTTGAGGGG
128 TTATTCTCAAAATG--TCAATTTCT-CACAATCAGGGAAACCCCAACCCCGTTATTTTCGAGGGG
919771 ATACTCCAACCCAGATTTTATTT-TCAAAACACCGA-TTTTCTATAATCA
190 ATACTCCAACCCAGATTTTATTTCT-AAAACACCGATTTTTC-ATAATCA
* * * *
919819 GGGATACTCCAACC-CTATTATTTTTGAAGGGATACTCCAACCGCGATTTTATTTTCAAAACACC
1 GGGATACTCCAACCTC-GTTATTTTCGAAGGGATACTCCAACCCCGACTTTATTTTCAAAACACC
* **
919883 GATTTTTCACAATCGGAGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTT
65 GATTTCTCACAATCGGAGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACCTT
* * * * ** **
919948 ATTTTCAAAATGTCGATTTCTTATAATCAGGGATTCCCCAACCTTGTTATTTTCGAGGGGATACT
130 ATTCTCAAAATGTCAATTTCTCACAATCAGGGAAACCCCAACCCCGTTATTTTCGAGGGGATACT
* *
920013 CCAACCCCGATTTTATTTCTAGAACACCGATTTTTCATAATCA
195 CCAACCCAGATTTTATTTCTAAAACACCGATTTTTCATAATCA
*
920056 GGCGATACTCCAGCCTCGTT
1 GG-GATACTCCAACCTCGTT
920076 GTCATCTCCA
Statistics
Matches: 215, Mismatches: 31, Indels: 21
0.81 0.12 0.08
Matches are distributed among these distances:
236 2 0.01
237 179 0.83
238 32 0.15
239 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (237 bp):
GGGATACTCCAACCTCGTTATTTTCGAAGGGATACTCCAACCCCGACTTTATTTTCAAAACACCG
ATTTCTCACAATCGGAGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACCTTA
TTCTCAAAATGTCAATTTCTCACAATCAGGGAAACCCCAACCCCGTTATTTTCGAGGGGATACTC
CAACCCAGATTTTATTTCTAAAACACCGATTTTTCATAATCA
Found at i:932118 original size:55 final size:54
Alignment explanation
Indices: 932046--932183 Score: 170
Period size: 55 Copynumber: 2.5 Consensus size: 54
932036 CTCTTTTCAC
* * **
932046 CCTTTAGTCCTCAAAGAGTC-GGACGCCTTTCAAAACCCACACAAGTTGGTGGCA
1 CCTTCAGTCCTTAAAGAG-CAGGACGCCTTTCAAAACCCACACAAGCCGGTGGCA
** *
932100 TTTTCCAGTCCTTAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGCCGGTGGCA
1 CCTT-CAGTCCTTAAAGAGCAGGACGCCTTTCAAAACCCACACAAGCCGGTGGCA
* *
932155 CCTTCAGTCCTTAAAAAGCAAGACGCCTT
1 CCTTCAGTCCTTAAAGAGCAGGACGCCTT
932184 CTCCTTTTAA
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
54 26 0.37
55 45 0.63
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (54 bp):
CCTTCAGTCCTTAAAGAGCAGGACGCCTTTCAAAACCCACACAAGCCGGTGGCA
Found at i:932288 original size:154 final size:148
Alignment explanation
Indices: 932106--932386 Score: 359
Period size: 154 Copynumber: 1.9 Consensus size: 148
932096 GGCATTTTCC
* * * *
932106 AGTCCTTAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGCCGGTGGCACCTT-CAGTCCTTAAA
1 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGCCGGTGGCACCTTCCAATCCTCAAA
* *
932170 AAGCAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCTTCAAAGAG
66 AAGCAAGACGCCTT-T-C----AAAGCCCACACAAGCTGGTGGCACCTT--TAGTCCTCAAAGAG
932234 CAGGACGTTCTCTCCTTTCACCTTTT
123 CAGGACGTTCTCTCCTTTCACCTTTT
** **
932260 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAA
1 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGCCGGTGGCACCTTCCAATCCTCAAA
* * *
932325 GAGCAAGATGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTAGTCCTCAAAGAGTAGGA
66 AAGCAAGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTAGTCCTCAAAGAGCAGGA
932387 TGCCTTTTCC
Statistics
Matches: 112, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
148 17 0.15
149 22 0.20
150 3 0.03
153 1 0.01
154 48 0.43
155 21 0.19
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.23
Consensus pattern (148 bp):
AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGCCGGTGGCACCTTCCAATCCTCAAA
AAGCAAGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGT
TCTCTCCTTTCACCTTTT
Found at i:932308 original size:209 final size:209
Alignment explanation
Indices: 931948--932865 Score: 1453
Period size: 209 Copynumber: 4.4 Consensus size: 209
931938 TCTTTCACTT
* * *
931948 TTCAGTCCTCAAAGAGTAGGACGCCTTCTCCTTCTAAAGCCCACACAAGTTGGTGGCACTTCCCA
1 TTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCA
* * *
932013 GTCCTCAAAGAGTAGGACGCTCTCTCTTTTCACCCTTTAGTCCTCAAAGAGTC-GGACGCCTTTC
66 GTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAG-CAAGACGCCTTTC
*
932077 AAAACCCACACAAGTTGGTGGCATTTTCCAGTCCTTAAAGAGCAGGACGCCTTTCAAAGCCCACA
130 AAAACCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACA
*
932142 CAAGCCGGTGGCACC
195 CAAGCTGGTGGCACC
* * * * *
932157 TTCAGTCCTTAAAAAGCAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTA
1 TTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCA
* * *
932222 GTCTTCAAAGAGCAGGACGTTCTCTCCTTTCACCTTTTAGTCCTCAAAGAGCAAGACGCCTTTCA
66 GTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTCA
* * * *
932287 AAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAAGATGCCTTTCAAAGCCCACAC
131 AAACCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAC
932352 AAGCTGGTGGCACC
196 AAGCTGGTGGCACC
* * * *
932366 TTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCA
1 TTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCA
* *
932431 GTCCTCAAAGAGCAAGACGCTCTCT-CTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCA
66 GTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTCA
* * **
932495 AAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAATAGGACGCCTTTCAAAGCCCACAC
131 AAACCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAC
932560 AAGCTGGTGGCACC
196 AAGCTGGTGGCACC
* *
932574 TTCAATCCTCAAAGAGCAGGATGCCTTCCCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCA
1 TTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCA
*
932639 GTCCTCAAAGAGCAGGACGCTTTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTCA
66 GTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTCA
932704 AAACCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAC
131 AAACCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAC
932769 AAGCTGGTGGCACC
196 AAGCTGGTGGCACC
* * * * * *
932783 TTCAGTCCTCAAAAAGCAGGATGTCTTCTTCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCA
1 TTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCA
*
932848 GTCCTAAAAGAGCAGGAC
66 GTCCTCAAAGAGCAGGAC
932866 ACCTTTCAAA
Statistics
Matches: 647, Mismatches: 60, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
208 193 0.30
209 454 0.70
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (209 bp):
TTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCA
GTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTCA
AAACCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAC
AAGCTGGTGGCACC
Found at i:932326 original size:55 final size:55
Alignment explanation
Indices: 932260--932450 Score: 233
Period size: 55 Copynumber: 3.4 Consensus size: 55
932250 TTCACCTTTT
*
932260 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCC
* * *
932315 AATCCTCAAAGAGCAAGATGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTT--
1 AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTTCC
* * * *
932369 AGTCCTCAAAGAGTAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCC
1 AGTCCTCAAAGAGCA--A-GAC---GCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCC
932430 AGTCCTCAAAGAGCAAGACGC
1 AGTCCTCAAAGAGCAAGACGC
932451 TCTCTCTTTC
Statistics
Matches: 113, Mismatches: 14, Indels: 18
0.78 0.10 0.12
Matches are distributed among these distances:
54 13 0.12
55 47 0.42
56 4 0.04
57 1 0.01
58 2 0.02
59 4 0.04
60 28 0.25
61 14 0.12
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCC
Found at i:932496 original size:153 final size:147
Alignment explanation
Indices: 932317--932591 Score: 383
Period size: 153 Copynumber: 1.8 Consensus size: 147
932307 CATTTTCCAA
*
932317 TCCTCAAAGAGCAAGATGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTT-AGTCCTCAAAGA
1 TCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAAGA
* * * *
932381 GTAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCA
66 ATAGGA---C---GCCTTTCAAAGCCCACACAAGCTGGTGGCACCTT--CAATCCTCAAAGAGCA
932445 AGACGCTCTCTCTTTCACCCTTTAG
123 AGACGCTCTCTCTTTCACCCTTTAG
* * **
932470 TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGA
1 TCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAAGA
932535 ATAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTCAATCCTCAAAGAGCA
66 ATAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTCAATCCTCAAAGAGCA
932592 GGATGCCTTC
Statistics
Matches: 111, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
147 15 0.14
148 28 0.25
149 3 0.03
151 1 0.01
153 47 0.42
154 17 0.15
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (147 bp):
TCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAAGA
ATAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTCAATCCTCAAAGAGCAAGACGCTC
TCTCTTTCACCCTTTAG
Found at i:932533 original size:55 final size:54
Alignment explanation
Indices: 932468--932662 Score: 221
Period size: 55 Copynumber: 3.5 Consensus size: 54
932458 TTCACCCTTT
932468 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC
** * **
932523 AGTCCTCAAAGAATAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
* * * **
932577 AATCCTCAAAGAGCAGGATGCCTTCCCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCC
1 AGTCCTCAAAGAGCAGGA------CGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC
932638 AGTCCTCAAAGAGCAGGACG-CTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTC
932663 TCCTTTCACC
Statistics
Matches: 115, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
54 22 0.19
55 47 0.41
60 28 0.24
61 18 0.16
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (54 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
Found at i:932726 original size:417 final size:418
Alignment explanation
Indices: 931948--932861 Score: 1487
Period size: 417 Copynumber: 2.2 Consensus size: 418
931938 TCTTTCACTT
* *
931948 TTCAGTCCTCAAAGAGTAGGACGCCTTCTCC-TTCTAAAGCCCACACAAGTTGGTGGCACTTCCC
1 TTCAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTC-AAAGCCCACACAAGTTGGTGGCACTTCCC
* *
932012 AGTCCTCAAAGAGTAGGACGCTCTCTCTTTTCACCCTTTAGTCCTCAAAGAGTCGGACGCCTTTC
65 AGTCCTCAAAGAGCAAGACGCTCTCTCTTTTCACCCTTTAGTCCTCAAAGAGTCGGACGCCTTTC
* *
932077 AAAACCCACACAAGTTGGTGGCATTTTCCAGTCCTTAAAGAGCAGGACGCCTTTCAAAGCCCACA
130 AAAACCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAACAGGACGCCTTTCAAAGCCCACA
* * *
932142 CAAGCCGGTGGCACCTTCAGTCCTTAAAAAGCAAGACGCCTTCTCCTTTTAAAGCCCACACAAGT
195 CAAGCCGGTGGCACCTTCAATCCTCAAAAAGCAAGACGCCTTCCCCTTTTAAAGCCCACACAAGT
* * *
932207 TGGTGGCACTTCCTAGTCTTCAAAGAGCAGGACGTTCTCTCCTTTCACCTTTTAGTCCTCAAAGA
260 TGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGTTCTCTCCTTTCACCCTTTAGTCCTCAAAGA
* *
932272 GCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAAGATGCC
325 GCAAGACGCCTTTCAAAACCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAAGACGCC
932337 TTTCAAAGCCCACACAAGCTGGTGGCACC
390 TTTCAAAGCCCACACAAGCTGGTGGCACC
*
932366 TTTAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCA
1 TTCAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCA
932431 GTCCTCAAAGAGCAAGACGCTCTCTC-TTTCACCCTTTAGTCCTCAAAGAG-CAGGACGCCTTTC
66 GTCCTCAAAGAGCAAGACGCTCTCTCTTTTCACCCTTTAGTCCTCAAAGAGTC-GGACGCCTTTC
* * *
932494 AAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAATAGGACGCCTTTCAAAGCCCACA
130 AAAACCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAACAGGACGCCTTTCAAAGCCCACA
* * * *
932559 CAAGCTGGTGGCACCTTCAATCCTCAAAGAGCAGGATGCCTTCCCCTTTTAAAGCCCACACAAGT
195 CAAGCCGGTGGCACCTTCAATCCTCAAAAAGCAAGACGCCTTCCCCTTTTAAAGCCCACACAAGT
932624 TGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTT-TCTCCTTTCACCCTTTAGTCCTCAAAG
260 TGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACG-TTCTCTCCTTTCACCCTTTAGTCCTCAAAG
* *
932688 AGCAAGACGCCTTTCAAAACCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGC
324 AGCAAGACGCCTTTCAAAACCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAAGACGC
932753 CTTTCAAAGCCCACACAAGCTGGTGGCACC
389 CTTTCAAAGCCCACACAAGCTGGTGGCACC
* * * * *
932783 TTCAGTCCTCAAAAAGCAGGATGTCTTCTT-CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 TTCAGTCCTCAAAGAGTAGGATGCCTT-TTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCC
*
932847 AGTCCTAAAAGAGCA
65 AGTCCTCAAAGAGCA
932862 GGACACCTTT
Statistics
Matches: 461, Mismatches: 31, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
416 1 0.00
417 371 0.80
418 86 0.19
419 3 0.01
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (418 bp):
TTCAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCA
GTCCTCAAAGAGCAAGACGCTCTCTCTTTTCACCCTTTAGTCCTCAAAGAGTCGGACGCCTTTCA
AAACCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAACAGGACGCCTTTCAAAGCCCACAC
AAGCCGGTGGCACCTTCAATCCTCAAAAAGCAAGACGCCTTCCCCTTTTAAAGCCCACACAAGTT
GGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGTTCTCTCCTTTCACCCTTTAGTCCTCAAAGAG
CAAGACGCCTTTCAAAACCCACACAAGTTGGTGGCATTTTCCAATCCTCAAAGAGCAAGACGCCT
TTCAAAGCCCACACAAGCTGGTGGCACC
Found at i:932917 original size:55 final size:54
Alignment explanation
Indices: 932677--932919 Score: 306
Period size: 55 Copynumber: 4.3 Consensus size: 54
932667 TTCACCCTTT
* *
932677 AGTCCTCAAAGAGCAAGACGCCTTTCAAAACCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-C
* **
932732 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
* *
932786 AGTCCTCAAAAAGCAGGATGTCTTCTTCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGA---C-GC--CTTTCAAAGCCCACACAAGTTGGTGGCATTTT-C
* * *
932847 AGTCCTAAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC
*
932902 AGTCCTCAAGGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
932920 TGTCTTTTCC
Statistics
Matches: 164, Mismatches: 16, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
54 18 0.11
55 92 0.56
56 4 0.02
57 2 0.01
58 2 0.01
60 29 0.18
61 17 0.10
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (54 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
Found at i:932967 original size:116 final size:116
Alignment explanation
Indices: 932698--933041 Score: 424
Period size: 115 Copynumber: 2.9 Consensus size: 116
932688 AGCAAGACGC
* *
932698 CTTTCAAAACCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGC
1 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAGC
* * * *
932763 CCACACAAGCTGGTGGCAC-CTTCAGTCCTCAAAAAGCAGGATGTCTTCTT
66 CCACACAAGTTGGTGGCACTTTTTAGTCCTCAAGAAGCAGGATGTCTTCTT
*
932813 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTAAAAGAGCAGGACACCTTTCAAAGC
1 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAGC
*
932878 CCACACAAGTTGGTGGCACTTTTTAGTCCTCAAGGAGCAGGATGTCTT-TT
66 CCACACAAGTTGGTGGCACTTTTTAGTCCTCAAGAAGCAGGATGTCTTCTT
** ** * * *
932928 CCATTT-AAAGCCCATGCAAGTTGGTGGCACCTTCCAGTCCCCAAAGAGTAGGATGCTTTCTCCT
1 -C-TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA------CACCT
* * * *
932992 TGCAAAGCCCATACAAGTTGGTAGCACTTTTTAGTCCCCAAGAAGCAGGA
58 TTCAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTCAAGAAGCAGGA
933042 CCCATTTCAT
Statistics
Matches: 199, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
115 82 0.41
116 65 0.33
117 3 0.02
122 49 0.25
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (116 bp):
CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAGC
CCACACAAGTTGGTGGCACTTTTTAGTCCTCAAGAAGCAGGATGTCTTCTT
Found at i:932981 original size:61 final size:60
Alignment explanation
Indices: 932697--933021 Score: 334
Period size: 61 Copynumber: 5.5 Consensus size: 60
932687 GAGCAAGACG
* * *
932697 CCTTTCAAAACCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA--C---G
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGATGCTTTT
* * *
932752 CCTTTCAAAGCCCACACAAGCTGGTGGCACCTT-CAGTCCTCAAAAAGCAGGATGTCTTCTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGATG-CTT-TT
* * *
932813 -CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTAAAAGAGCAGGA--C---A
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGATGCTTTT
** *
932867 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTCAAGGAGCAGGATGTCTTTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGATG-CTTTT
** * * *
932928 CCATTT-AAAGCCCATGCAAGTTGGTGGCACCTTCCAGTCCCCAAAGAGTAGGATGCTTTCT
1 CC-TTTCAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGATGCTTT-T
* * *
932989 CCTTGCAAAGCCCATACAAGTTGGTAGCACTTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTT
933022 TTAGTCCCCA
Statistics
Matches: 222, Mismatches: 30, Indels: 30
0.79 0.11 0.11
Matches are distributed among these distances:
54 18 0.08
55 76 0.34
57 1 0.00
58 2 0.01
60 35 0.16
61 87 0.39
62 3 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (60 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGATGCTTTT
Found at i:933727 original size:20 final size:20
Alignment explanation
Indices: 933670--933743 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
933660 TCACAATTTG
*
933670 TATCGATACATTTTTTCATTG
1 TATCGATACA-TTTTTCATTA
** * *
933691 TATTAATATATTGTTCATTA
1 TATCGATACATTTTTCATTA
*
933711 TATCGATACATTTTTCAATA
1 TATCGATACATTTTTCATTA
*
933731 TATCGATATATTT
1 TATCGATACATTT
933744 AGACATTTTT
Statistics
Matches: 42, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
20 35 0.83
21 7 0.17
ACGTcount: A:0.31, C:0.11, G:0.07, T:0.51
Consensus pattern (20 bp):
TATCGATACATTTTTCATTA
Found at i:936276 original size:130 final size:130
Alignment explanation
Indices: 936058--936307 Score: 313
Period size: 130 Copynumber: 1.9 Consensus size: 130
936048 GCCCAGTTTT
* * * * * * * *
936058 ATTTTCAAAACATCAATTTTTCATAATTGAGGATACTCCAATCCCGTTATTTCCGATGGGATAGT
1 ATTTCCAAAACACCAATTTTTCACAATCGAGGATACTCCAACCCCATTATTTCCGAGGGGATACT
* * *
936123 CCAACTCCGGTTTTATTTCTAAAACACCAA-TTCTCCACAATCGGAGATACTCCAATTTCGATTT
66 CCAACCCCGGCTTTATTTATAAAACACCAATTTCT-CACAATCGGAGATACTCCAATTTCGATTT
936187 G
130 G
* * *
936188 ATTTCCAAAACACCAATTTTTTACAATCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACT
1 ATTTCCAAAACACCAATTTTTCACAATCGAGGATACTCCAACCCCATTATTTCCGAGGGGATACT
* *** *
936253 CCAACCCCGGCTTTATTTATAAAATATTGATTTCTCACAATCGGGGATACTCCAA
66 CCAACCCCGGCTTTATTTATAAAACACCAATTTCTCACAATCGGAGATACTCCAA
936308 CCCCATTATT
Statistics
Matches: 100, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
130 96 0.96
131 4 0.04
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (130 bp):
ATTTCCAAAACACCAATTTTTCACAATCGAGGATACTCCAACCCCATTATTTCCGAGGGGATACT
CCAACCCCGGCTTTATTTATAAAACACCAATTTCTCACAATCGGAGATACTCCAATTTCGATTTG
Found at i:936306 original size:79 final size:77
Alignment explanation
Indices: 936210--936631 Score: 427
Period size: 79 Copynumber: 5.3 Consensus size: 77
936200 CCAATTTTTT
*
936210 ACAATCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTATAA
1 ACAATCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCCGACTTTATTT-TAA
* *
936275 AATATTGATTTCTC
65 AACATCGATTTC-C
* * * * *
936289 ACAATCGGGGATACTCCAACCCCATTATTTTTGCA-GGGATACTCTAACCCCGGCCTTATCTCTA
1 ACAATCGGGGATACTCCAACCCCATTATTTTCG-AGGGGATACTCCAACCCCGACTTTAT-TTTA
* *
936353 AAGCATCAATTTTCC
64 AAACATCGA-TTTCC
* * *
936368 ATAATCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCTCGATTTTATTTTCAA
1 ACAATCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCCGACTTTATTTT-AA
*
936433 AACACCGAATTTCC
65 AACATCG-ATTTCC
*
936447 ACAATCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTTTAA
1 ACAATCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCCGACTTTA-TTTTAA
* *
936512 AACGTTGATTTCC
65 AACATCGATTTCC
* ** * * * * *
936525 TATAATTAGGGATGCTCCAACCTTC-TTA-TTTCTGAGGAGATACTCCAACCCCAATTTTATTTC
1 -ACAATCGGGGATACTCCAACC-CCATTATTTTC-GAGGGGATACTCCAACCCCGACTTTATTT-
* *
936588 TAGAACACCGATTTTCC
62 TAAAACATCGA-TTTCC
* * *
936605 ATAATCAGGGGATACTTCAGCCCCATT
1 ACAATC-GGGGATACTCCAACCCCATT
936632 GTCATCTCCA
Statistics
Matches: 288, Mismatches: 41, Indels: 27
0.81 0.12 0.08
Matches are distributed among these distances:
78 16 0.06
79 242 0.84
80 30 0.10
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (77 bp):
ACAATCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCCGACTTTATTTTAAA
ACATCGATTTCC
Found at i:936545 original size:237 final size:238
Alignment explanation
Indices: 936168--936631 Score: 598
Period size: 237 Copynumber: 2.0 Consensus size: 238
936158 CACAATCGGA
** **
936168 GATACTCCAATTTCGATTTGATTTCCAAAACACCAATTTTTTACAATCGGGGATACTCCAACCCC
1 GATACTCCAACCTCGATTTGATTTCCAAAACACCAATTTTCCACAATCGGGGATACTCCAACCCC
* * *
936233 ATTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTATAAAATATTGATTTCTCACAATCGGG
66 ATTATTTTCGAGGGGATACTCCAACCCCGACTTTATTTATAAAACATTGATTTCTCACAATCAGG
* * ** *
936298 GATACTCCAACC-CCATTATTTTTGCAGG-GATACTCTAACCCCGGCCTTATCTCTA-AAGCATC
131 GATACTCCAACCTCC-TTATTTCTG-AGGAGATACTCCAACCCCAACCTTATCTCTAGAA-CACC
936360 AATTTTCCATAATC-GGGGATACTCCAACCCCATTATTTTCGAGGG
193 AATTTTCCATAATCAGGGGATACTCCAACCCCATTATTTTCGAGGG
* *
936405 GATACTCCAACCTCGATTTTATTTTCAAAACACCGAA-TTTCCACAATCGGGGATACTCCAACCC
1 GATACTCCAACCTCGATTTGATTTCCAAAACACC-AATTTTCCACAATCGGGGATACTCCAACCC
* * * * *
936469 CATTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTTTAAAACGTTGATTTC-CTATAATTA
65 CATTATTTTCGAGGGGATACTCCAACCCCGACTTTATTTATAAAACATTGATTTCTC-ACAATCA
* * ** * *
936533 GGGATGCTCCAACCTTCTTATTTCTGAGGAGATACTCCAACCCCAATTTTATTTCTAGAACACCG
129 GGGATACTCCAACCTCCTTATTTCTGAGGAGATACTCCAACCCCAACCTTATCTCTAGAACACCA
* *
936598 ATTTTCCATAATCAGGGGATACTTCAGCCCCATT
194 ATTTTCCATAATCAGGGGATACTCCAACCCCATT
936632 GTCATCTCCA
Statistics
Matches: 194, Mismatches: 27, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
236 4 0.02
237 167 0.86
238 23 0.12
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (238 bp):
GATACTCCAACCTCGATTTGATTTCCAAAACACCAATTTTCCACAATCGGGGATACTCCAACCCC
ATTATTTTCGAGGGGATACTCCAACCCCGACTTTATTTATAAAACATTGATTTCTCACAATCAGG
GATACTCCAACCTCCTTATTTCTGAGGAGATACTCCAACCCCAACCTTATCTCTAGAACACCAAT
TTTCCATAATCAGGGGATACTCCAACCCCATTATTTTCGAGGG
Found at i:937757 original size:21 final size:20
Alignment explanation
Indices: 937711--937765 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
937701 ATATCGATAC
**
937711 AATGTATCGATACATGACCA
1 AATGTATCGATACATGAAAA
937731 AATGTATCGATACATGAAAA
1 AATGTATCGATACATGAAAA
*
937751 GAATGTATCAATACA
1 -AATGTATCGATACA
937766 GGTCATTGGC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
20 18 0.58
21 13 0.42
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACATGAAAA
Found at i:943680 original size:20 final size:21
Alignment explanation
Indices: 943648--943699 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 21
943638 CCCCTAGGCA
*
943648 GCACCCACCAGGTCGCGACC-G
1 GCACCC-CCAGGTCGCAACCGG
943669 GCACCCCCAGGTCGCAACCGG
1 GCACCCCCAGGTCGCAACCGG
943690 GCAGCCCCCA
1 GCA-CCCCCA
943700 CACTAGCAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 12 0.43
21 10 0.36
22 6 0.21
ACGTcount: A:0.19, C:0.50, G:0.27, T:0.04
Consensus pattern (21 bp):
GCACCCCCAGGTCGCAACCGG
Found at i:945816 original size:13 final size:13
Alignment explanation
Indices: 945798--945823 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
945788 ACACACAATA
945798 TGTATCGATACAT
1 TGTATCGATACAT
945811 TGTATCGATACAT
1 TGTATCGATACAT
945824 CCCAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:945839 original size:33 final size:32
Alignment explanation
Indices: 945778--945845 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 32
945768 GTAGCCAAAT
*
945778 TTGTATCGATACACACAATATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
945810 TTGTATCGATACATCCCAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
945843 TTG
1 TTG
945846 GTTTGTAACG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:950751 original size:13 final size:13
Alignment explanation
Indices: 950733--950758 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
950723 TACAGCAAGT
950733 ATGTATCGATACA
1 ATGTATCGATACA
950746 ATGTATCGATACA
1 ATGTATCGATACA
950759 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:955744 original size:19 final size:17
Alignment explanation
Indices: 955719--955783 Score: 66
Period size: 19 Copynumber: 3.8 Consensus size: 17
955709 ATTTCAATGA
955719 TTTGTATCGATACATGAG
1 TTTGTATCGATACAT-AG
955737 TGTTGTATCGATACA-A-
1 T-TTGTATCGATACATAG
955753 --TGTATCGATACATAAG
1 TTTGTATCGATACAT-AG
955769 TTTTGTATCGATACA
1 -TTTGTATCGATACA
955784 ATGTCTCTCT
Statistics
Matches: 40, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
13 12 0.30
15 1 0.03
17 1 0.03
18 1 0.03
19 25 0.62
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.38
Consensus pattern (17 bp):
TTTGTATCGATACATAG
Found at i:955758 original size:13 final size:13
Alignment explanation
Indices: 955740--955764 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
955730 ACATGAGTGT
955740 TGTATCGATACAA
1 TGTATCGATACAA
955753 TGTATCGATACA
1 TGTATCGATACA
955765 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:955762 original size:32 final size:32
Alignment explanation
Indices: 955721--955787 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
955711 TTCAATGATT
*
955721 TGTATCGATACATGAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
955753 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
955785 TGT
1 TGT
955788 CTCTCTACGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:955854 original size:13 final size:13
Alignment explanation
Indices: 955836--955860 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
955826 ATTACTCAAA
955836 TGTATCGATACAT
1 TGTATCGATACAT
955849 TGTATCGATACA
1 TGTATCGATACA
955861 GTGATCTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:955911 original size:52 final size:52
Alignment explanation
Indices: 955871--955997 Score: 227
Period size: 52 Copynumber: 2.4 Consensus size: 52
955861 GTGATCTTTA
955871 TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAATG
1 TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAATG
* * *
955923 TATCGATACATACAGGCAAATTTGCTCAGATGTATCGATACACTATGAAATG
1 TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAATG
955975 TATCGATACATGCAGGCAAATTT
1 TATCGATACATGCAGGCAAATTT
955998 TCATATTTTG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.28
Consensus pattern (52 bp):
TATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAATG
Found at i:964012 original size:16 final size:17
Alignment explanation
Indices: 963987--964024 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
963977 TTGTGCTGTA
* *
963987 ATCATGACATC-ATGAC
1 ATCATAACATCAATAAC
964003 ATCATAACATCAATAAC
1 ATCATAACATCAATAAC
964020 ATCAT
1 ATCAT
964025 TATTTGCATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.26
Consensus pattern (17 bp):
ATCATAACATCAATAAC
Found at i:964167 original size:33 final size:33
Alignment explanation
Indices: 964110--964173 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
964100 CTTCAAATCT
964110 CTTCTCAAAGCCCACGACTGAGTGGCATCTTTC
1 CTTCTCAAAGCCCACGACTGAGTGGCATCTTTC
* * * *
964143 CTTCTTAAAGTCCATGACTTAGTGGCATCTT
1 CTTCTCAAAGCCCACGACTGAGTGGCATCTT
964174 GTCTCAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (33 bp):
CTTCTCAAAGCCCACGACTGAGTGGCATCTTTC
Found at i:964185 original size:30 final size:29
Alignment explanation
Indices: 964106--964232 Score: 85
Period size: 31 Copynumber: 4.1 Consensus size: 29
964096 AATTCTTCAA
*
964106 ATCTCTTCTCAAAGCCCACGACTGAGTGGC
1 ATCT-TTCTCAAAGTCCACGACTGAGTGGC
* *
964136 ATCTTTCCTTCTTAAAGTCCATGACTTAGTGGC
1 ATCTTT-C-TC--AAAGTCCACGACTGAGTGGC
* * * *
964169 ATCTTGTCTCAAAGTCCACAATTCAATGGC
1 ATCTT-TCTCAAAGTCCACGACTGAGTGGC
* *
964199 A-CTTTCTTTTCAAAGTCCACAACTCAGTGGC
1 ATCTTTC---TCAAAGTCCACGACTGAGTGGC
964230 ATC
1 ATC
964233 AAAGTCCACG
Statistics
Matches: 78, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
28 2 0.03
29 5 0.06
30 21 0.27
31 23 0.29
32 3 0.04
33 23 0.29
34 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.31
Consensus pattern (29 bp):
ATCTTTCTCAAAGTCCACGACTGAGTGGC
Found at i:964238 original size:23 final size:23
Alignment explanation
Indices: 964208--964253 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
964198 CACTTTCTTT
964208 TCAAAGTCCACAACTCAGTGGCA
1 TCAAAGTCCACAACTCAGTGGCA
* *
964231 TCAAAGTCCACGACTCTGTGGCA
1 TCAAAGTCCACAACTCAGTGGCA
964254 CCTTTTTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (23 bp):
TCAAAGTCCACAACTCAGTGGCA
Found at i:964241 original size:54 final size:56
Alignment explanation
Indices: 964177--964287 Score: 145
Period size: 57 Copynumber: 2.0 Consensus size: 56
964167 GCATCTTGTC
*
964177 TCAAAGTCCACAATTCAATGGCA-C-TTTCTTTTCAAAGTCCACAACTCAGTGGCA
1 TCAAAGTCCACAACTCAATGGCACCTTTTCTTTTCAAAGTCCACAACTCAGTGGCA
* ** * *
964231 TCAAAGTCCACGACTCTGTGGCACCTTTTTCTTTTCAAAGTCCACGACTCCGTGGCA
1 TCAAAGTCCACAACTCAATGGCACC-TTTTCTTTTCAAAGTCCACAACTCAGTGGCA
964288 CCTTCTTTTC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
54 19 0.40
55 1 0.02
57 28 0.58
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (56 bp):
TCAAAGTCCACAACTCAATGGCACCTTTTCTTTTCAAAGTCCACAACTCAGTGGCA
Found at i:964696 original size:100 final size:99
Alignment explanation
Indices: 964233--965296 Score: 1094
Period size: 100 Copynumber: 10.5 Consensus size: 99
964223 CAGTGGCATC
* * * *
964233 AAAGTCCACGACTCTGTGGCACCTT-TTTCTTTTCAAAGTCCACGACTCCGTGGCACCTTCTTTT
1 AAAGTCCACAAC-CCGTGGCACCTTGTTCCTTTT--AAGTCCACAACTCCGTGGCACCTTCTTTT
* *
964297 CAAAGCCCACAACTCTGTGACACTCTTTTTTCCCTTTT
63 CAAAGCCCACAACTCCGTGGCACTC-TTTTTCCCTTTT
* *
964335 AAAGTCCACAACCCCGTGGGACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCA
1 AAAGTCCACAA-CCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCA
964400 AAGCCCACAACTCCGTGGCACTCTTTTTTCCCTTTT
65 AAGCCCACAACTCCGTGGCACTC-TTTTTCCCTTTT
* * * *
964436 AAAGTCCACAACCCCGTGGTACCTTGCTCCTTTTAAGTCCACGACTCCGTGGCACCTTTTTTTCA
1 AAAGTCCACAA-CCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCA
*
964501 AAGCCCACAACTCCGTGGCACTCTTTTTTCCTTTTT
65 AAGCCCACAACTCCGTGGCACTC-TTTTTCCCTTTT
964537 AAAGTCCACAACCCCGTGG---CTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCA
1 AAAGTCCACAA-CCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCA
964599 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
65 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
*
964634 AAAGTCCACAACCCTGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCA
1 AAAGTCCACAACCC-GTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCA
964699 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
65 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
* * * * *
964734 AAAGTCCACAACTCCGTGGTGCTCTTTTTTCCCTTTTAAAGTCCACAACCCCGTGGCACCTTGTT
1 AAAGTCCACAAC-CCGT-G-GCACCTTGTT-CCTTTT-AAGTCCACAACTCCGTGGCACCTTCTT
** * *
964799 CCTTTTAAGTCCACGACTCCGTGGCAC-C---TT--CTTTT
61 --TTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
* * * *
964834 CAAAGCCCACAACTCCATGGCACTCTTTTTCTCTTTTAAAGTCCACAA-TCCCGTGGCACCTTGT
1 -AAAGTCCACAAC-CCGTGGCAC-CTTGTTC-CTTTT-AAGTCCACAACT-CCGTGGCACCTTCT
** * *
964898 TCCTTTTAAGTCCACGACTCCGTGGCAC-C---TT--CTTTT
60 T--TTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
* * *
964934 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
1 -AAAGTCCACAAC-CCGTGGCAC-CTTGTTCC-TTTT-AAGTCCACAACTCCGTGGCAC-C---T
* * * * *
964999 TCTCTTTTAAAGTCCACAACCCCATGGCAC-CTTGTT-CCTTTT
57 TCT-TTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
* * * ** * *
965041 -CAGTCCACGACTCCGTGGCACCTTCTT--TTCAAAGCCCACAACTCCATGGCACTCTTTTTCCC
1 AAAGTCCACAAC-CCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCAC-C---TT--C
*
965103 TTTT-AAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTT
59 TTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
* *
965143 AAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTCAGTCCACGACTCCGTGGCACCTTCTTTTCA
1 AAAGTCCACAA-CCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCA
* *
965208 AAGCCCACAACTCTGTGGCGCTCTTTTTCCCTTTT
65 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
* *
965243 AAAGTCCACAACTTCGTGGCACCTTGTTCCTTTTAAGTCCACAACTTCGTGGCA
1 AAAGTCCACAAC-CCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
965297 TCTTTCACCC
Statistics
Matches: 859, Mismatches: 65, Indels: 78
0.86 0.06 0.08
Matches are distributed among these distances:
96 3 0.00
97 26 0.03
98 63 0.07
99 11 0.01
100 348 0.41
101 213 0.25
102 36 0.04
103 58 0.07
104 34 0.04
105 39 0.05
106 23 0.03
107 5 0.01
ACGTcount: A:0.19, C:0.34, G:0.14, T:0.33
Consensus pattern (99 bp):
AAAGTCCACAACCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCAA
AGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
Found at i:965001 original size:136 final size:134
Alignment explanation
Indices: 964234--965296 Score: 1056
Period size: 136 Copynumber: 7.9 Consensus size: 134
964224 AGTGGCATCA
* * *
964234 AAGTCCACGACTCTGTGGCACCTTTTTCTTTTCAAAGTCCACGACTCCGTGGCACC---TT-CTT
1 AAGTCCACGACTCCGTGGCACC---TTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCCTT
* * * * *
964295 TTCAAAGCCCACAACTCTGTGACACTCTTTTTTCCCTTTTAAAGTCCACAACCCCGTGGGACCTT
63 TTTAAAGCCCACAACTCCGTGGCACTC-TTTTTCTCTTTTAAAGTCCACAA-CCCGTGGCACCTT
964360 GTTCCTTTT
126 GTTCCTTTT
*
964369 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTTCCCTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCAC-C-TTTTTCCTTT
* * * ** *
964434 TTAAAGTCCACAACCCCGTGGTAC-CTTGCTC-CTTTT-AAGTCCACGACTCCGTGGCACCTT-T
64 TTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTAAAGTCCACAAC-CCGTGGCACCTTGT
*
964495 T--TTTCA
128 TCCTTT-T
* * * * * *
964501 AAGCCCACAACTCCGTGGCACTCTTTTTTCCTTTTTAAAGTCCACAACCCCGTGG---CTTGTTC
1 AAGTCCACGACTCCGTGGCAC-C----TT-CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTC
* * *
964563 C-TTTT-AAGTCCACAACTCCGTGGCAC-C---TTCT-TTTCAAAGCCCACAACTCCGTGGCACT
60 CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTAAAGTCCACAAC-CCGTGGCAC-
*
964621 CTTTTTCCCTTTT
123 CTTGTT-CCTTTT
* * ** * *
964634 AAAGTCCACAAC-CCTGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACC---TT-CT
1 -AAGTCCACGACTCC-GTGGCACCTTCTT--TTCAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * * *
964694 TTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACTCCGTGGTGCTCT
62 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTAAAGTCCACAAC-CCGT-G-GCACC
*
964759 TTTTTCCCTTTT
124 TTGTT-CCTTTT
* * * ** * *
964771 AAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCCGTGGCACC---TT-CTT
1 -AAGTCCACGACTCCGTGGCACCTTCTT--TTCAAAGCCCACAACTCCGTGGCACCTTTTTCCTT
* *
964832 TTCAAAGCCCACAACTCCATGGCACTCTTTTTCTCTTTTAAAGTCCACAATCCCGTGGCACCTTG
63 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTAAAGTCCACAA-CCCGTGGCACCTTG
964897 TTCCTTTT
127 TTCCTTTT
964905 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTTT
*
964970 TAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTAAAGTCCACAACCCCATGGCACCTTGTT
65 TAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTAAAGTCCACAA-CCCGTGGCACCTTGTT
965035 CCTTTT
129 CCTTTT
* * *
965041 CAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCATGGCACTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTTT
965106 TAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTAAAGTCCACAACCCCGTGGCACCTTGTT
65 TAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTAAAGTCCACAA-CCCGTGGCACCTTGTT
965171 CCTTTT
129 CCTTTT
* * * *
965177 CAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCTGTGGCGCTCTTTTTCCCTTT
1 AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTTT
* * * *
965242 TAAAGTCCACAACTTCGTGGCAC-CTTGTTC-CTTTT-AAGTCCACAACTTCGTGGCA
65 TAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTAAAGTCCACAAC-CCGTGGCA
965297 TCTTTCACCC
Statistics
Matches: 816, Mismatches: 67, Indels: 92
0.84 0.07 0.09
Matches are distributed among these distances:
128 7 0.01
129 22 0.03
130 27 0.03
131 66 0.08
132 54 0.07
133 56 0.07
134 52 0.06
135 44 0.05
136 311 0.38
137 128 0.16
138 49 0.06
ACGTcount: A:0.19, C:0.34, G:0.14, T:0.33
Consensus pattern (134 bp):
AAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTT
AAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTAAAGTCCACAACCCGTGGCACCTTGTTCC
TTTT
Found at i:965126 original size:236 final size:235
Alignment explanation
Indices: 964393--965296 Score: 1205
Period size: 236 Copynumber: 3.8 Consensus size: 235
964383 GTGGCACCTT
* *
964393 CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTTCCCTTTTAAAGTCCACAACCCCGTGGTAC
1 CTTTT-AAAGCCCACAACTCCGTGGCACTC-TTGTT-CCTTTTAAAGTCCACAACCCCGTGGCAC
* *
964458 CTTGCTCCTTTT--AAGTCCACGACTCCGTGGCACCTTT-TTTTCAAAGCCCACAACTCCGTGGC
63 C-T--TCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTCTTTTCAAAGCCCACAACTCCGTGGC
*
964520 ACTCTTTTTTCCTTTTTAAAGTCCACAACCCCGTGG---CTTGTTCCTTTTAAGTCCACAACTCC
125 ACTC-TTTTTCCCTTTTAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCC
*
964582 GTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
189 GTGGCACCTTCTTTTCAAAGCCCACAACTCCATGGCACTCTTTTTCC
* * *
964629 CTTTTAAAGTCCACAAC-CCTGTGGCAC-CTTGTTCCTTTT-AAGTCCACGACTCCGTGGCACCT
1 CTTTTAAAGCCCACAACTCC-GTGGCACTCTTGTTCCTTTTAAAGTCCACAACCCCGTGGCACCT
* *
964691 T-CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAAGTCCACAACTCCGTGGT
65 TCCTTTTCAAAGCCCACAACTCCGTGGCAC-C--TTT--CTTTTCAAAGCCCACAACTCCGTGGC
* *
964754 GCTCTTTTTTCCCTTTTAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACGACTCC
125 ACTC-TTTTTCCCTTTTAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCC
*
964819 GTGGCACCTTCTTTTCAAAGCCCACAACTCCATGGCACTCTTTTTCT
189 GTGGCACCTTCTTTTCAAAGCCCACAACTCCATGGCACTCTTTTTCC
* * *
964866 CTTTTAAAGTCCACAA-TCCCGTGGCAC-CTTGTTCCTTTT-AAGTCCACGACTCCGTGGCACCT
1 CTTTTAAAGCCCACAACT-CCGTGGCACTCTTGTTCCTTTTAAAGTCCACAACCCCGTGGCACCT
*
964928 T-CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTTAAAGCCCACAACTCCGTGGCA
65 TCCTTTTCAAAGCCCACAACTCCGTGGCAC-C--TTT-CTTTTCAAAGCCCACAACTCCGTGGCA
* * * *
964992 CTCTTTTTCTCTTTTAAAGTCCACAACCCCATGGCACCTTGTTCCTTTTCAGTCCACGACTCCGT
126 CTCTTTTTCCCTTTTAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGT
965057 GGCACCTTCTTTTCAAAGCCCACAACTCCATGGCACTCTTTTTCC
191 GGCACCTTCTTTTCAAAGCCCACAACTCCATGGCACTCTTTTTCC
*
965102 CTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTTAAAGTCCACAACCCCGTGGCACCT
1 CTTTTAAAGCCCACAACTCCGTGGCACTCTTGTTC-CTTTTAAAGTCCACAACCCCGTGGCACC-
* * * *
965167 TGTTCCTTTTC--AGTCCACGACTCCGTGGCACC-TTCTTTTCAAAGCCCACAACTCTGTGGCGC
64 --TTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTCTTTTCAAAGCCCACAACTCCGTGGCAC
** *
965229 TCTTTTTCCCTTTTAAAGTCCACAACTTCGTGGCACCTTGTTCCTTTTAAGTCCACAACTTCGTG
127 TCTTTTTCCCTTTTAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTG
965294 GCA
192 GCA
965297 TCTTTCACCC
Statistics
Matches: 608, Mismatches: 37, Indels: 46
0.88 0.05 0.07
Matches are distributed among these distances:
227 5 0.01
228 1 0.00
229 19 0.03
230 2 0.00
231 19 0.03
232 9 0.01
233 4 0.01
234 55 0.09
235 22 0.04
236 224 0.37
237 194 0.32
238 7 0.01
239 20 0.03
240 1 0.00
241 18 0.03
242 2 0.00
243 6 0.01
ACGTcount: A:0.19, C:0.34, G:0.13, T:0.33
Consensus pattern (235 bp):
CTTTTAAAGCCCACAACTCCGTGGCACTCTTGTTCCTTTTAAAGTCCACAACCCCGTGGCACCTT
CCTTTTCAAAGCCCACAACTCCGTGGCACCTTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTT
TTTCCCTTTTAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCAC
CTTCTTTTCAAAGCCCACAACTCCATGGCACTCTTTTTCC
Found at i:965310 original size:34 final size:34
Alignment explanation
Indices: 964233--965296 Score: 528
Period size: 31 Copynumber: 31.6 Consensus size: 34
964223 CAGTGGCATC
* **
964233 AAAGTCCACGAC-TCTGTGGCACCTT-TTTCTTTT
1 AAAGTCCACAACTTC-GTGGCACCTTGTCCCTTTT
* *
964266 CAAAGTCCACGACTCCGTGGCACC-T-T--CTTTT
1 -AAAGTCCACAACTTCGTGGCACCTTGTCCCTTTT
* * *
964297 CAAAGCCCACAAC-TCTGTGACACTCTTTTTTCCCTTTT
1 -AAAGTCCACAACTTC-GTGGCAC-C--TTGTCCCTTTT
** * *
964335 AAAGTCCACAACCCCGTGGGACCTTGTTCCTTTT
1 AAAGTCCACAACTTCGTGGCACCTTGTCCCTTTT
* *
964369 -AAGTCCACGACTCCGTGGCACC-T-T--CTTTT
1 AAAGTCCACAACTTCGTGGCACCTTGTCCCTTTT
* * *
964398 CAAAGCCCACAACTCCGTGGCACTCTTTTTTCCCTTTT
1 -AAAGTCCACAACTTCGTGGCAC-C--TTGTCCCTTTT
** *
964436 AAAGTCCACAACCCCGTGGTACCTTG-CTCCTTTT
1 AAAGTCCACAACTTCGTGGCACCTTGTC-CCTTTT
* *
964470 -AAGTCCACGACTCCGTGGCACCTT-T---TTTT
1 AAAGTCCACAACTTCGTGGCACCTTGTCCCTTTT
* * * *
964499 CAAAGCCCACAACTCCGTGGCACTCTTTTTTCCTTTTT
1 -AAAGTCCACAACTTCGTGGCAC-C--TTGTCCCTTTT
** *
964537 AAAGTCCACAACCCCGTGG---CTTGTTCCTTTT
1 AAAGTCCACAACTTCGTGGCACCTTGTCCCTTTT
*
964568 -AAGTCCACAACTCCGTGGCACC-T-T--CTTTT
1 AAAGTCCACAACTTCGTGGCACCTTGTCCCTTTT
* * *
964597 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 -AAAGTCCACAACTTCGTGGCAC-C-TTGTCCCTTTT
* *
964634 AAAGTCCACAAC-CCTGTGGCACCTTGTTCCTTTT
1 AAAGTCCACAACTTC-GTGGCACCTTGTCCCTTTT
* *
964668 -AAGTCCACGACTCCGTGGCACC-T-T--CTTTT
1 AAAGTCCACAACTTCGTGGCACCTTGTCCCTTTT
* * *
964697 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 -AAAGTCCACAACTTCGTGGCAC-C-TTGTCCCTTTT
* * * *
964734 AAAGTCCACAACTCCGTGGTGCTCTTTTTTCCCTTTT
1 AAAGTCCACAACTTCGT-G-GCAC-CTTGTCCCTTTT
** *
964771 AAAGTCCACAACCCCGTGGCACCTTGTTCCTTTT
1 AAAGTCCACAACTTCGTGGCACCTTGTCCCTTTT
* *
964805 -AAGTCCACGACTCCGTGGCACC-T-T--CTTTT
1 AAAGTCCACAACTTCGTGGCACCTTGTCCCTTTT
* * * * *
964834 CAAAGCCCACAACTCCATGGCACTCTTTTTCTCTTTT
1 -AAAGTCCACAACTTCGTGGCAC-C-TTGTCCCTTTT
* *
964871 AAAGTCCACAA-TCCCGTGGCACCTTGTTCCTTTT
1 AAAGTCCACAACT-TCGTGGCACCTTGTCCCTTTT
* *
964905 -AAGTCCACGACTCCGTGGCACC-T-T--CTTTT
1 AAAGTCCACAACTTCGTGGCACCTTGTCCCTTTT
* * * *
964934 CAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTT
1 -AAAGTCCACAACTTCGTGGCAC-C-TTGTCCCTTTT
* * * *
964971 AAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTT
1 AAAGTCCACAACTTCGTGGCAC-C-TTGTCCCTTTT
** * *
965007 AAAGTCCACAACCCCATGGCACCTTGTTCCTTTT
1 AAAGTCCACAACTTCGTGGCACCTTGTCCCTTTT
* * *
965041 -CAGTCCACGACTCCGTGGCACC-T-T--CTTTT
1 AAAGTCCACAACTTCGTGGCACCTTGTCCCTTTT
* * * *
965070 CAAAGCCCACAACTCCATGGCACTCTTTTTCCCTTTT
1 -AAAGTCCACAACTTCGTGGCAC-C-TTGTCCCTTTT
* * * *
965107 AAAGCCCACAACTCCGTGGCACTCTTTTTCTCTTTT
1 AAAGTCCACAACTTCGTGGCAC-C-TTGTCCCTTTT
** *
965143 AAAGTCCACAACCCCGTGGCACCTTGTTCCTTTT
1 AAAGTCCACAACTTCGTGGCACCTTGTCCCTTTT
* * *
965177 -CAGTCCACGACTCCGTGGCACC-T-T--CTTTT
1 AAAGTCCACAACTTCGTGGCACCTTGTCCCTTTT
* * *
965206 CAAAGCCCACAAC-TCTGTGGCGCTCTTTTTCCCTTTT
1 -AAAGTCCACAACTTC-GTGGCAC-C-TTGTCCCTTTT
*
965243 AAAGTCCACAACTTCGTGGCACCTTGTTCCTTTT
1 AAAGTCCACAACTTCGTGGCACCTTGTCCCTTTT
965277 -AAGTCCACAACTTCGTGGCA
1 AAAGTCCACAACTTCGTGGCA
965297 TCTTTCACCC
Statistics
Matches: 846, Mismatches: 95, Indels: 179
0.76 0.08 0.16
Matches are distributed among these distances:
29 39 0.05
30 19 0.02
31 182 0.22
32 16 0.02
33 159 0.19
34 99 0.12
35 21 0.02
36 181 0.21
37 111 0.13
38 19 0.02
ACGTcount: A:0.19, C:0.34, G:0.14, T:0.33
Consensus pattern (34 bp):
AAAGTCCACAACTTCGTGGCACCTTGTCCCTTTT
Found at i:965340 original size:32 final size:32
Alignment explanation
Indices: 965303--965496 Score: 273
Period size: 32 Copynumber: 6.0 Consensus size: 32
965293 GGCATCTTTC
965303 ACCCTTTTCAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTTTCAAAGCCCACACAAGTCGGTGGCA
*
965335 ACCCTTTCCAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTTTCAAAGCCCACACAAGTCGGTGGCA
* *
965367 ACCCTTCTCAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTTTCAAAGCCCACACAAGTCGGTGGCA
* *
965399 ACCTTTTTCTAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTTTC-AAAGCCCACACAAGTCGGTGGCA
* *
965432 ATCCCCTCT-AAAGCCCACACAAGTCGGTGGCA
1 A-CCCTTTTCAAAGCCCACACAAGTCGGTGGCA
* *
965464 ACCTTTTTCAAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTTTC-AAAGCCCACACAAGTCGGTGGCA
965497 TCTTCCTTTA
Statistics
Matches: 144, Mismatches: 14, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
31 4 0.03
32 90 0.62
33 46 0.32
34 4 0.03
ACGTcount: A:0.28, C:0.33, G:0.19, T:0.20
Consensus pattern (32 bp):
ACCCTTTTCAAAGCCCACACAAGTCGGTGGCA
Found at i:965419 original size:97 final size:97
Alignment explanation
Indices: 965307--965496 Score: 303
Period size: 97 Copynumber: 2.0 Consensus size: 97
965297 TCTTTCACCC
*
965307 TTTTCAAAGCCCACACAAGTCGGTGGCAA-CCCTTTCCAAAGCCCACACAAGTCGGTGGCAACCC
1 TTTTCAAAGCCCACACAAGTCGGTGGCAATCCC-CTCCAAAGCCCACACAAGTCGGTGGCAACCC
965371 TTCTC-AAAGCCCACACAAGTTGGTGGCAACCT
65 TTCTCAAAAGCCCACACAAGTTGGTGGCAACCT
* * *
965403 TTTTCTAAAGCCCACACAAGTTGGTGGCAATCCCCTCTAAAGCCCACACAAGTCGGTGGCAACCT
1 TTTTC-AAAGCCCACACAAGTCGGTGGCAATCCCCTCCAAAGCCCACACAAGTCGGTGGCAACCC
*
965468 TTTTCAAAAGCCCACACAAGTTGGTGGCA
65 TTCTCAAAAGCCCACACAAGTTGGTGGCA
965497 TCTTCCTTTA
Statistics
Matches: 86, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
96 5 0.06
97 55 0.64
98 26 0.30
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (97 bp):
TTTTCAAAGCCCACACAAGTCGGTGGCAATCCCCTCCAAAGCCCACACAAGTCGGTGGCAACCCT
TCTCAAAAGCCCACACAAGTTGGTGGCAACCT
Found at i:965445 original size:65 final size:65
Alignment explanation
Indices: 965310--965496 Score: 297
Period size: 65 Copynumber: 2.9 Consensus size: 65
965300 TTCACCCTTT
* * * *
965310 TCAAAGCCCACACAAGTCGGTGGCAACC-CTTTCCAAAGCCCACACAAGTCGGTGGCAACCCTTC
1 TCAAAGCCCACACAAGTCGGTGGCAACCTTTTTCAAAAGCCCACACAAGTTGGTGGCAACCCCTC
* *
965374 TCAAAGCCCACACAAGTTGGTGGCAACCTTTTTCTAAAGCCCACACAAGTTGGTGGCAATCCCCT
1 TCAAAGCCCACACAAGTCGGTGGCAACCTTTTTCAAAAGCCCACACAAGTTGGTGGCAA-CCCCT
965439 C
65 C
965440 T-AAAGCCCACACAAGTCGGTGGCAACCTTTTTCAAAAGCCCACACAAGTTGGTGGCA
1 TCAAAGCCCACACAAGTCGGTGGCAACCTTTTTCAAAAGCCCACACAAGTTGGTGGCA
965497 TCTTCCTTTA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
64 27 0.24
65 81 0.71
66 6 0.05
ACGTcount: A:0.29, C:0.33, G:0.19, T:0.19
Consensus pattern (65 bp):
TCAAAGCCCACACAAGTCGGTGGCAACCTTTTTCAAAAGCCCACACAAGTTGGTGGCAACCCCTC
Found at i:965547 original size:21 final size:20
Alignment explanation
Indices: 965523--965590 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 20
965513 ATGTAGCTGG
965523 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCA-ATTGGCA
* *
965544 CCTTTAAGTC--CAATATCGCTA
1 CCTTGAA-TCAGCAAT-TGGC-A
965565 GCCTTGAATCAGCATATTGGCA
1 -CCTTGAATCAGCA-ATTGGCA
965587 CCTT
1 CCTT
965591 CATCTTTAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.14
21 13 0.36
22 9 0.25
23 5 0.14
24 2 0.06
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.29
Consensus pattern (20 bp):
CCTTGAATCAGCAATTGGCA
Found at i:965557 original size:43 final size:43
Alignment explanation
Indices: 965501--965967 Score: 466
Period size: 43 Copynumber: 10.1 Consensus size: 43
965491 GTGGCATCTT
* *
965501 CCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* *
965544 CCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* *
965587 CCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
*
965636 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* *
965679 CCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* *
965728 CCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTTGTCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATT---G-----G-CA
* * *
965780 TCTTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGG------CA
*
965829 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * * *
965872 CCTTTATCTTTAAGTCCAATGTAGCTGGCCTTAAATCAGCACTTTGGCA
1 -C-----CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
965921 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
965964 CCTT
1 CCTT
965968 CATCTTTAAA
Statistics
Matches: 356, Mismatches: 36, Indels: 64
0.78 0.08 0.14
Matches are distributed among these distances:
43 156 0.44
44 2 0.01
45 2 0.01
46 1 0.00
47 2 0.01
48 1 0.00
49 155 0.44
51 1 0.00
52 36 0.10
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (43 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
Found at i:965618 original size:49 final size:49
Alignment explanation
Indices: 965502--966012 Score: 602
Period size: 49 Copynumber: 10.9 Consensus size: 49
965492 TGGCATCTTC
*
965502 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * *
965545 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
*
965594 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
* *
965637 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
*
965686 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * *
965729 CTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCAT
* *
965781 CTTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCAC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * *
965830 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * *
965879 CTTTAAGTCCAATGTAGCTGGCCTTAAATCAGCACTTTGGCA----C--
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
*
965922 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
** * *
965971 CTTTAAACCCAATGTCGTTGGCCTTTAATCAGCACATTGGCA
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
966013 TTCTTCTCTT
Statistics
Matches: 396, Mismatches: 45, Indels: 48
0.81 0.09 0.10
Matches are distributed among these distances:
43 152 0.38
45 2 0.01
47 3 0.01
49 198 0.50
50 2 0.01
52 39 0.10
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
Found at i:965661 original size:92 final size:92
Alignment explanation
Indices: 965502--966012 Score: 815
Period size: 92 Copynumber: 5.5 Consensus size: 92
965492 TGGCATCTTC
*
965502 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTAGC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
965567 CTTGAATCAGCATATTGGCACCTTCAT
66 CTTGAATCAGCATATTGGCACCTTCAT
965594 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
965659 CTTGAATCAGCATATTGGCACCTTCAT
66 CTTGAATCAGCATATTGGCACCTTCAT
*
965686 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGTTGGC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
*
965751 CTTGAATCAGCATATTGGCGCCTTTGTCAT
66 CTTGAATCAGCATATTGGCACC--T-TCAT
* *
965781 CTTTAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCACCTTTAAGTCCAATATC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG------CACCTTTAAGTCCAATATC
*
965846 GCTGGCCTTGAATCAGCATATTGGCACCTTTAT
60 GCTGGCCTTGAATCAGCATATTGGCACCTTCAT
* *
965879 CTTTAAGTCCAATGTAGCTGGCCTTAAATCAGCACTTTGGCACCTTTAAGTCCAATATCGCTGGC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
*
965944 CTTGAATCAGCACATTGGCACCTTCAT
66 CTTGAATCAGCATATTGGCACCTTCAT
** * * *
965971 CTTTAAACCCAATGTCGTTGGCCTTTAATCAGCACATTGGCA
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
966013 TTCTTCTCTT
Statistics
Matches: 390, Mismatches: 20, Indels: 18
0.91 0.05 0.04
Matches are distributed among these distances:
92 262 0.67
94 1 0.00
95 42 0.11
98 39 0.10
99 1 0.00
101 45 0.12
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
CTTGAATCAGCATATTGGCACCTTCAT
Found at i:966734 original size:19 final size:19
Alignment explanation
Indices: 966710--966779 Score: 131
Period size: 19 Copynumber: 3.7 Consensus size: 19
966700 TTTCAACGAT
966710 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
966729 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
*
966748 TTGTATCGATACATAAGTT
1 TTGTATCGATACATAAGTG
966767 TTGTATCGATACA
1 TTGTATCGATACA
966780 ATGTATCGGT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
19 50 1.00
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:966850 original size:13 final size:13
Alignment explanation
Indices: 966832--966856 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
966822 ATTACTCAAA
966832 TGTATCGATACAT
1 TGTATCGATACAT
966845 TGTATCGATACA
1 TGTATCGATACA
966857 CTGATCTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:966992 original size:52 final size:52
Alignment explanation
Indices: 966867--966993 Score: 191
Period size: 52 Copynumber: 2.4 Consensus size: 52
966857 CTGATCTTTA
* *
966867 TATCGATACATGCAGGCAAATTTGCCTAGATGTATCGATACACTATAAAATG
1 TATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATAAAATG
* * * *
966919 TATCGATACATACAAGCAAATTTGCCCAAATGTATCGATACGCTATGAAATG
1 TATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATAAAATG
*
966971 TATCGATACATGCAGGTAAATTT
1 TATCGATACATGCAGGCAAATTT
966994 TCATATTTTG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (52 bp):
TATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATAAAATG
Found at i:970705 original size:27 final size:27
Alignment explanation
Indices: 970658--971802 Score: 429
Period size: 27 Copynumber: 38.3 Consensus size: 27
970648 TGTGTGTAGA
* *
970658 CACCTTTTTAAGCCCACAACTCCGTGG
1 CACCCTTTTAAGTCCACAACTCCGTGG
* * *
970685 CAACCTTTTAAGTCCATAACTCCATGG
1 CACCCTTTTAAGTCCACAACTCCGTGG
* *
970712 CACCCTTTTAAGTCCACGACTCTGTGG
1 CACCCTTTTAAGTCCACAACTCCGTGG
970739 CACCCTTTTAAGTCCACAACTCCGTGGTG
1 CACCCTTTTAAGTCCACAACTCCGT-G-G
* *
970768 CTTATTTCCTTTTCTA-TCCACAACTCCGTGG
1 C--A--CCCTTTT-AAGTCCACAACTCCGTGG
* * * *
970799 CATCCTTTCCTTTAAAGCCCATAACTACGTGG
1 CA--C---CCTTTTAAGTCCACAACTCCGTGG
970831 CACCTTCTTCCCTTTTAAGTCCACAACTCCGTGG
1 CA-------CCCTTTTAAGTCCACAACTCCGTGG
**
970865 CACCTTTTCCTTTTAAGTCCACAACTCTATGG
1 CA-C----CCTTTTAAGTCCACAACTCCGTGG
*
970897 CACCTTTTTCTTTTTACAGCCCACAACTCCGTGG
1 CACC-----C-TTTTA-AGTCCACAACTCCGTGG
* * *
970931 CACCCTTTTCCCTTTTAAGCCCATAACTCTGTGG
1 CA-------CCCTTTTAAGTCCACAACTCCGTGG
** * *
970965 CACCCTTTTCCCTTTTAAGTTTACAAGTCCGTGA
1 CA-------CCCTTTTAAGTCCACAACTCCGTGG
*
970999 CA-CCTTTTAAGTCCACAACTTCGTGG
1 CACCCTTTTAAGTCCACAACTCCGTGG
* *
971025 CACCCTTTTAAGCCCACAACTCCATGG
1 CACCCTTTTAAGTCCACAACTCCGTGG
** * ** *
971052 CACCCTTTTCCCTTTTAAGTCTGCAAGTCTATGA
1 CA-------CCCTTTTAAGTCCACAACTCCGTGG
971086 CA-CCTTTTAAGTCCACAACTCCGTGG
1 CACCCTTTTAAGTCCACAACTCCGTGG
* * *
971112 CACCCTTTTAAGCCCGCAACTCTGTGG
1 CACCCTTTTAAGTCCACAACTCCGTGG
* * * *
971139 TAGCCTTTTATGCCCACAACTCCGTGG
1 CACCCTTTTAAGTCCACAACTCCGTGG
* *
971166 CA-GCTTGTTAAGTTCACAAC-CTCGTGG
1 CACCCTT-TTAAGTCCACAACTC-CGTGG
*
971193 CACCCTTTTAAGTCCACGACTCCGTGG
1 CACCCTTTTAAGTCCACAACTCCGTGG
*
971220 CACCCTTTTAAGTCCATAACTCCGTGG
1 CACCCTTTTAAGTCCACAACTCCGTGG
** *
971247 CATCTTTTTTTTTTCAAAGCCCACAACTCCGTGG
1 CA-C----CCTTTT--AAGTCCACAACTCCGTGG
* *
971281 CACCTTGCTCCTTTAAGTCTACAACTCCGTTG
1 CACC---CT--TTTAAGTCCACAACTCCGTGG
* *
971313 CACCCTTTTAAGCCCATAACTCCGTGG
1 CACCCTTTTAAGTCCACAACTCCGTGG
* * * * **
971340 CAGCTTTTTAAGCCCATAACTTTGTGG
1 CACCCTTTTAAGTCCACAACTCCGTGG
*
971367 CAGCCTTTTAAGTCCACAAC-CCTGTGG
1 CACCCTTTTAAGTCCACAACTCC-GTGG
*
971394 CACCCTTTTAAGTCCACGACTCCGTGG
1 CACCCTTTTAAGTCCACAACTCCGTGG
*
971421 CACCCTTTTAAGTCCACAACTTCGTAGCG
1 CACCCTTTTAAGTCCACAACTCCGT-G-G
* * *
971450 C-CTTTTTCCTTTTAGGTCTACAACTTCGTGG
1 CAC-----CCTTTTAAGTCCACAACTCCGTGG
* * *
971481 CATCCTTTCCTTTAAAG-CTTATAACTCCGTGG
1 CA--C---CCTTTTAAGTC-CACAACTCCGTGG
971513 CACCCTCTTCCCTTTTAAGTCCACAACTCCGTGG
1 CA-------CCCTTTTAAGTCCACAACTCCGTGG
971547 CACTTTTTCCTTTTAAGTCCACAACTCCGTGG
1 CAC-----CCTTTTAAGTCCACAACTCCGTGG
* * *
971579 CACCTTTTTCTTTTCAAAGCCCATAACTTCGTGG
1 CACC-----CTTTT--AAGTCCACAACTCCGTGG
* *
971613 CACCTTTTTCCTTTTTAAGCCCACAACTTCGTGG
1 CA-C-----CC-TTTTAAGTCCACAACTCCGTGG
* *
971647 CACCCTTTTCCCTTTAAGTCTACAA-TACCGTGA
1 CACCC---T---TTTAAGTCCACAACT-CCGTGG
971680 CA-CCTTTTAAGTCCACAACTCCGTGG
1 CACCCTTTTAAGTCCACAACTCCGTGG
* *
971706 CATCCTTTTAAGTCCACAACTCTGTGG
1 CACCCTTTTAAGTCCACAACTCCGTGG
** *
971733 CACCTTTTTCTTTTCAAAGTGTACAACACCGTGG
1 CACC-----CTTTT--AAGTCCACAACTCCGTGG
**
971767 CACCCTTTTAAGTGTACAACTCCGTGG
1 CACCCTTTTAAGTCCACAACTCCGTGG
971794 CACCCTTTT
1 CACCCTTTT
971803 TCTTTTCAAA
Statistics
Matches: 874, Mismatches: 132, Indels: 224
0.71 0.11 0.18
Matches are distributed among these distances:
26 64 0.07
27 356 0.41
28 13 0.01
29 14 0.02
30 2 0.00
31 8 0.01
32 133 0.15
33 63 0.07
34 201 0.23
35 8 0.01
36 5 0.01
37 4 0.00
40 1 0.00
41 2 0.00
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.33
Consensus pattern (27 bp):
CACCCTTTTAAGTCCACAACTCCGTGG
Found at i:970854 original size:66 final size:65
Alignment explanation
Indices: 970784--971006 Score: 270
Period size: 66 Copynumber: 3.4 Consensus size: 65
970774 TCCTTTTCTA
*
970784 TCCACAACTCCGTGGCATCC-TTTCCTTTAAAGCCCATAACTAC-GTGGCACCTTCTTCCCTTTT
1 TCCACAACTCCGTGGCA-CCTTTTCCTTTTAAGCCCATAACT-CTGTGGCACCTT-TTCCCTTTT
970847 AAG
63 AAG
* * * * *
970850 TCCACAACTCCGTGGCACCTTTTCCTTTTAAGTCCACAACTCTATGGCACCTTTTTCTTTTTACA
1 TCCACAACTCCGTGGCACCTTTTCCTTTTAAGCCCATAACTCTGTGGCACCTTTTCCCTTTTA-A
970915 G
65 G
*
970916 CCCACAACTCCGTGGCACCCTTTTCCCTTTTAAGCCCATAACTCTGTGGCACCCTTTTCCCTTTT
1 TCCACAACTCCGTGGCA-CCTTTT-CCTTTTAAGCCCATAACTCTGTGGCA-CCTTTTCCCTTTT
970981 AAG
63 AAG
** * *
970984 TTTACAAGTCCGTGACACCTTTT
1 TCCACAACTCCGTGGCACCTTTT
971007 AAGTCCACAA
Statistics
Matches: 134, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
65 11 0.08
66 62 0.46
67 12 0.09
68 37 0.28
69 12 0.09
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.35
Consensus pattern (65 bp):
TCCACAACTCCGTGGCACCTTTTCCTTTTAAGCCCATAACTCTGTGGCACCTTTTCCCTTTTAAG
Found at i:970947 original size:100 final size:98
Alignment explanation
Indices: 970741--970984 Score: 278
Period size: 100 Copynumber: 2.4 Consensus size: 98
970731 CTCTGTGGCA
** * * *
970741 CCCTTTTAAGTCCACAACTCCGTGGTGCTTATTTCCTTTTCTA-TCCACAACTCCGTGGCATCCT
1 CCCTTTTAAGTCCACAACTCCGTGGCACCT-TTTCCTTTT-AAGTCCACAACTCCATGGCATCCT
*
970805 TTCCTTTAAAGCCCATAACTACGTGGCACCTTCTT
64 TTCCTTTAAAGCCCACAACTACGTGGCACCTTCTT
*
970840 CCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAGTCCACAACTCTATGGCA-CCTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAGTCCACAACTCCATGGCATCC--T
* * *
970904 TTCTTTTTACAGCCCACAACTCCGTGGCACCCTT-TT
64 TTC-CTTTAAAGCCCACAACTACGTGGCA-CCTTCTT
* * *
970940 CCCTTTTAAGCCCATAACTCTGTGGCACCCTTTTCCCTTTTAAGT
1 CCCTTTTAAGTCCACAACTCCGTGGCA-CCTTTT-CCTTTTAAGT
970985 TTACAAGTCC
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
97 3 0.02
98 24 0.19
99 31 0.25
100 47 0.38
101 10 0.08
102 10 0.08
ACGTcount: A:0.19, C:0.34, G:0.11, T:0.36
Consensus pattern (98 bp):
CCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAGTCCACAACTCCATGGCATCCTTT
CCTTTAAAGCCCACAACTACGTGGCACCTTCTT
Found at i:970966 original size:134 final size:121
Alignment explanation
Indices: 970785--971070 Score: 321
Period size: 134 Copynumber: 2.3 Consensus size: 121
970775 CCTTTTCTAT
* *
970785 CCACAACTCCGTGGCATCC-TTT-CCTTTAAAGCCCATAACTACGTGGCA-CCTTCTTCCCTTTT
1 CCACAACTCCGTGGCACCCTTTTCCCTTTTAAGCCCATAACTACGTGGCACCCTT-TTCCCTTTT
*
970847 AAGTCCACAACTCCGTGGCACCTTTTCCTTTTAAGTCCACAAC-TCTATGGCACCTTTTTCTTTT
65 AAGTCCACAACTCCGT-G-A-C---ACCTTTTAAGTCCACAACTTC-ATGGCACC-----C-TTT
970911 TACAGC
117 TA-AGC
970917 CCACAACTCCGTGGCACCCTTTTCCCTTTTAAGCCCATAACT-CTGTGGCACCCTTTTCCCTTTT
1 CCACAACTCCGTGGCACCCTTTTCCCTTTTAAGCCCATAACTAC-GTGGCACCCTTTTCCCTTTT
** * *
970981 AAGTTTACAAGTCCGTGACACCTTTTAAGTCCACAACTTCGTGGCACCCTTTTAAGC
65 AAGTCCACAACTCCGTGACACCTTTTAAGTCCACAACTTCATGGCACCCTTTTAAGC
*
971038 CCACAACTCCATGGCACCCTTTTCCCTTTTAAG
1 CCACAACTCCGTGGCACCCTTTTCCCTTTTAAG
971071 TCTGCAAGTC
Statistics
Matches: 141, Mismatches: 8, Indels: 21
0.83 0.05 0.12
Matches are distributed among these distances:
121 35 0.25
122 5 0.04
123 1 0.01
128 24 0.17
129 2 0.01
131 1 0.01
132 19 0.13
133 5 0.04
134 45 0.32
135 4 0.03
ACGTcount: A:0.21, C:0.35, G:0.12, T:0.33
Consensus pattern (121 bp):
CCACAACTCCGTGGCACCCTTTTCCCTTTTAAGCCCATAACTACGTGGCACCCTTTTCCCTTTTA
AGTCCACAACTCCGTGACACCTTTTAAGTCCACAACTTCATGGCACCCTTTTAAGC
Found at i:971146 original size:87 final size:87
Alignment explanation
Indices: 970940--971147 Score: 317
Period size: 87 Copynumber: 2.4 Consensus size: 87
970930 GCACCCTTTT
* * *
970940 CCCTTTTAAGCCCATAACTCTGTGGCACCCTTTTCCCTTTTAAGTTTACAAGTCCGTGACACCTT
1 CCCTTTTAAGCCCACAACTCTGTGGCACCCTTTTCCCTTTTAAGTCTACAAGTCCATGACACCTT
*
971005 TTAAGTCCACAACTTCGTGGCA
66 TTAAGTCCACAACTCCGTGGCA
** * *
971027 CCCTTTTAAGCCCACAACTCCATGGCACCCTTTTCCCTTTTAAGTCTGCAAGTCTATGACACCTT
1 CCCTTTTAAGCCCACAACTCTGTGGCACCCTTTTCCCTTTTAAGTCTACAAGTCCATGACACCTT
971092 TTAAGTCCACAACTCCGTGGCA
66 TTAAGTCCACAACTCCGTGGCA
* * *
971114 CCCTTTTAAGCCCGCAACTCTGTGGTAGCCTTTT
1 CCCTTTTAAGCCCACAACTCTGTGGCACCCTTTT
971148 ATGCCCACAA
Statistics
Matches: 108, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 108 1.00
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.32
Consensus pattern (87 bp):
CCCTTTTAAGCCCACAACTCTGTGGCACCCTTTTCCCTTTTAAGTCTACAAGTCCATGACACCTT
TTAAGTCCACAACTCCGTGGCA
Found at i:971539 original size:66 final size:64
Alignment explanation
Indices: 971396--971671 Score: 208
Period size: 66 Copynumber: 4.3 Consensus size: 64
971386 CCCTGTGGCA
* * * * * *
971396 CCCTTTTAAGTCCACGACTCCGTGGCA-C---CCTTTTAAG-TCCACAACTTCGTAGCGCCTTTT
1 CCCTTTTAAGTCCACAACTTCGTGGCACCTTTCCTTTTAAGCT-CACAACTCCGTGGCACCCTTT
* * * * * *
971456 TCCTTTTAGGTCTACAACTTCGTGGCATCCTTTCCTTTAAAGCTTATAACTCCGTGGCACCCTCT
1 CCCTTTTAAGTCCACAACTTCGTGGCA-CCTTTCCTTTTAAGCTCACAACTCCGTGGCACCCT-T
971521 T
64 T
* *
971522 CCCTTTTAAGTCCACAACTCCGTGGCACTTTTTCCTTTTAAG-TCCACAACTCCGTGGCA-CCTT
1 CCCTTTTAAGTCCACAACTTCGTGGCAC-CTTTCCTTTTAAGCT-CACAACTCCGTGGCACCCTT
971585 T
64 T
** * * * *
971586 TTCTTTTCAAAGCCCATAACTTCGTGGCACCTTTTTCCTTTTTAAGCCCACAACTTCGTGGCACC
1 CCCTTTT--AAGTCCACAACTTCGTGGCACC--TTTCC-TTTTAAGCTCACAACTCCGTGGCACC
971651 CTTTT
61 C-TTT
*
971656 CCC-TTTAAGTCTACAA
1 CCCTTTTAAGTCCACAA
971672 TACCGTGACA
Statistics
Matches: 166, Mismatches: 33, Indels: 27
0.73 0.15 0.12
Matches are distributed among these distances:
60 22 0.13
62 1 0.01
64 7 0.04
65 26 0.16
66 68 0.41
67 12 0.07
68 21 0.13
69 5 0.03
70 4 0.02
ACGTcount: A:0.19, C:0.33, G:0.13, T:0.36
Consensus pattern (64 bp):
CCCTTTTAAGTCCACAACTTCGTGGCACCTTTCCTTTTAAGCTCACAACTCCGTGGCACCCTTT
Found at i:971801 original size:88 final size:86
Alignment explanation
Indices: 971625--971802 Score: 225
Period size: 88 Copynumber: 2.0 Consensus size: 86
971615 CCTTTTTCCT
*
971625 TTTTAAGCCCACAACTTCGTGGCACCCTTTTCCCTTTAAGTCTACAATACCGTGACACCTTTTAA
1 TTTTAAGCCCACAACTTCGTGGCACCCTTTTCCCTTTAAGTCTACAACACCGTGACACCTTTTAA
*
971690 GTCCACAACTCCGTGGCATCC
66 GTCCACAACTCCGTGGCACCC
* * * * *
971711 TTTTAAGTCCACAAC-TCTGTGGCA-CCTTTTTCTTTTCAAAGTGTACAACACCGTGGCACCCTT
1 TTTTAAGCCCACAACTTC-GTGGCACCCTTTTCCCTTT--AAGTCTACAACACCGTGACA-CCTT
**
971774 TTAAGTGTACAACTCCGTGGCACCC
62 TTAAGTCCACAACTCCGTGGCACCC
971799 TTTT
1 TTTT
971803 TCTTTTCAAA
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
85 12 0.15
86 20 0.25
87 17 0.22
88 30 0.38
ACGTcount: A:0.22, C:0.31, G:0.14, T:0.33
Consensus pattern (86 bp):
TTTTAAGCCCACAACTTCGTGGCACCCTTTTCCCTTTAAGTCTACAACACCGTGACACCTTTTAA
GTCCACAACTCCGTGGCACCC
Found at i:971821 original size:35 final size:34
Alignment explanation
Indices: 971782--971899 Score: 130
Period size: 34 Copynumber: 3.4 Consensus size: 34
971772 TTTTAAGTGT
*
971782 ACAACTCCGTGGCACCCTTTTTCTTTTCAAAGACC
1 ACAACTCAGTGGCA-CCTTTTTCTTTTCAAAGACC
* * *
971817 ACAACTCAATGGCACCTTTTTCTTTTCGAAGCCC
1 ACAACTCAGTGGCACCTTTTTCTTTTCAAAGACC
* * * *
971851 ACAACTCTGTGGCACCTTTCTTCCTTTAAAAGTCC
1 ACAACTCAGTGGCACCTTT-TTCTTTTCAAAGACC
*
971886 ACAA-TTAGTGGCAC
1 ACAACTCAGTGGCAC
971900 TTGCTGTATA
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
34 43 0.61
35 27 0.39
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (34 bp):
ACAACTCAGTGGCACCTTTTTCTTTTCAAAGACC
Found at i:971835 original size:61 final size:61
Alignment explanation
Indices: 971522--971837 Score: 199
Period size: 61 Copynumber: 5.1 Consensus size: 61
971512 GCACCCTCTT
*
971522 CCCTTTTAAGTCCACAACTCCGTGGCA-CTTTTTCCTTTT--AAGTCCACAACTCCGTGGCA
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTTTT-CTTTTCAAAGACCACAACTCCGTGGCA
* * * * * *
971581 CCTTTTTCTTTTCAAAGCCCATAACTTCGTGGCACCTTTTTCCTTTT-TAAGCCCACAACTTCGT
1 CC-----CTTTT--AAGTCCACAACTCCGTGGCACCTTTTT-CTTTTCAAAGACCACAACTCCGT
971645 GGCA
58 GGCA
* * *
971649 CCCTTTTCCCTTTAAGTCTACAA-TACCGTGACA-C-----CTTTT--AAGTCCACAACTCCGTG
1 CCC---T---TTTAAGTCCACAACT-CCGTGGCACCTTTTTCTTTTCAAAGACCACAACTCCGTG
971705 GCA
59 GCA
* * *** *
971708 TCCTTTTAAGTCCACAACTCTGTGGCACCTTTTTCTTTTCAAAGTGTACAACACCGTGGCA
1 CCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGACCACAACTCCGTGGCA
** **
971769 CCCTTTTAAGTGTACAACTCCGTGGCACCCTTTTTCTTTTCAAAGACCACAACTCAATGGCA
1 CCCTTTTAAGTCCACAACTCCGTGGCA-CCTTTTTCTTTTCAAAGACCACAACTCCGTGGCA
*
971831 CCTTTTT
1 CCCTTTT
971838 CTTTTCGAAG
Statistics
Matches: 201, Mismatches: 30, Indels: 49
0.72 0.11 0.17
Matches are distributed among these distances:
53 18 0.09
54 2 0.01
56 1 0.00
59 27 0.13
60 5 0.02
61 40 0.20
62 34 0.17
63 1 0.00
64 5 0.02
66 20 0.10
67 25 0.12
68 20 0.10
69 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.13, T:0.34
Consensus pattern (61 bp):
CCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGACCACAACTCCGTGGCA
Found at i:972155 original size:32 final size:33
Alignment explanation
Indices: 972071--972298 Score: 238
Period size: 32 Copynumber: 7.1 Consensus size: 33
972061 CCAGTGGAGA
*
972071 AACC-TTCTTCAAAGCCCTCACAAGTTGGTGGC
1 AACCTTTCTTCAAAGCCCACACAAGTTGGTGGC
* * **
972103 AACCTTTTTTTAAAGCCCACACAAACTGGTGGC
1 AACCTTTCTTCAAAGCCCACACAAGTTGGTGGC
* *
972136 AA-CTTTCTTGAAAGCCCACACAAGTTGGTAGC
1 AACCTTTCTTCAAAGCCCACACAAGTTGGTGGC
972168 AACCCTTTC-T-AAAGCCCACACAAGTTGGTGGC
1 AA-CCTTTCTTCAAAGCCCACACAAGTTGGTGGC
** * **
972200 -ACC-CCCTTCAAAGTCCACACAAGAAGGTGGC
1 AACCTTTCTTCAAAGCCCACACAAGTTGGTGGC
* * *
972231 AACC-TTCTCCAAAGCCAACACAAGCTGGTGGC
1 AACCTTTCTTCAAAGCCCACACAAGTTGGTGGC
* *
972263 AACCTTTCTT-AAAGCCCACACAAGTCGGAGGC
1 AACCTTTCTTCAAAGCCCACACAAGTTGGTGGC
972295 AACC
1 AACC
972299 CCACACAAGT
Statistics
Matches: 161, Mismatches: 28, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
29 1 0.01
30 3 0.02
31 20 0.12
32 102 0.63
33 30 0.19
34 5 0.03
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (33 bp):
AACCTTTCTTCAAAGCCCACACAAGTTGGTGGC
Found at i:972246 original size:95 final size:97
Alignment explanation
Indices: 972071--972298 Score: 259
Period size: 95 Copynumber: 2.4 Consensus size: 97
972061 CCAGTGGAGA
* *** * *
972071 AACC-TTCTTCAAAGCCCTCACAAGTTGGTGGCAACCTTTTTTTAAAGCCCACACAAACTGGTGG
1 AACCTTTCTT-AAAGCCCACACAAGTTGGTGGCAACCTCCCTTCAAAGCCCACACAAACAGGTGG
* ** * *
972135 CAACTTTCTTGAAAGCCCACACAAGTTGGTAGC
65 CAACCTTCTCCAAAGCCAACACAAGCTGGTAGC
*
972168 AACCCTTTC-TAAAGCCCACACAAGTTGGTGGC-ACC-CCCTTCAAAGTCCACACAAGA-AGGTG
1 AA-CCTTTCTTAAAGCCCACACAAGTTGGTGGCAACCTCCCTTCAAAGCCCACACAA-ACAGGTG
*
972229 GCAACCTTCTCCAAAGCCAACACAAGCTGGTGGC
64 GCAACCTTCTCCAAAGCCAACACAAGCTGGTAGC
* *
972263 AACCTTTCTTAAAGCCCACACAAGTCGGAGGCAACC
1 AACCTTTCTTAAAGCCCACACAAGTTGGTGGCAACC
972299 CCACACAAGT
Statistics
Matches: 111, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
94 6 0.05
95 69 0.62
96 7 0.06
97 23 0.21
98 3 0.03
99 3 0.03
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (97 bp):
AACCTTTCTTAAAGCCCACACAAGTTGGTGGCAACCTCCCTTCAAAGCCCACACAAACAGGTGGC
AACCTTCTCCAAAGCCAACACAAGCTGGTAGC
Found at i:972424 original size:52 final size:49
Alignment explanation
Indices: 972362--972660 Score: 158
Period size: 52 Copynumber: 5.9 Consensus size: 49
972352 AGCACATTGG
* *
972362 CACCTTTAAGTCCAATATCTCTAGCCTTGAATTAGCATATTGGCACTTTT
1 CACCTTTAAGTCCAATATCGCTAGCCTTGAATTAGCATATTGGCAC-CTT
* * * *
972412 ACCACCTTTAAGTCCATTGTCGCTGGCCTTGAATCT-GCACATTGGCACCTT
1 --CACCTTTAAGTCCAATATCGCTAGCCTTGAAT-TAGCATATTGGCACCTT
* ** * *
972463 CATCTTTAAGTCTGATATCGCTAGCCCTGAATCAGCATATTGGCATCCTT
1 CACCTTTAAGTCCAATATCGCTAGCCTTGAATTAGCATATTGGCA-CCTT
* * * * * *
972513 -ATCC--TAAG-CCTAATGTCGCTGGCCTTAAATCAGCACATTGGCATTCTTCT
1 CA-CCTTTAAGTCC-AATATCGCTAGCCTTGAATTAGCATATTGGCA--CCT-T
* * * * * * * * * * *
972563 CATCTTCAAGTCTATTGTCGCTGGTCGTGAATCAGCATATTGACATTCTT
1 CACCTTTAAGTCCAATATCGCTAGCCTTGAATTAGCATATTGGCA-CCTT
* * * *
972613 CGCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
1 --CACCTTTAAGTCCAATATCGCTAGCCTTGAATTAGCATATTGGCAC
972661 ATTTATCATT
Statistics
Matches: 190, Mismatches: 44, Indels: 27
0.73 0.17 0.10
Matches are distributed among these distances:
47 1 0.01
48 30 0.16
49 39 0.21
50 8 0.04
51 5 0.03
52 105 0.55
53 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.33
Consensus pattern (49 bp):
CACCTTTAAGTCCAATATCGCTAGCCTTGAATTAGCATATTGGCACCTT
Found at i:972494 original size:49 final size:48
Alignment explanation
Indices: 972431--972659 Score: 163
Period size: 52 Copynumber: 4.6 Consensus size: 48
972421 AAGTCCATTG
* * * *
972431 TCGCTGGCCTTGAATCTGCACATTGGCA-CCTTCATCTTTAAGTCTGATA
1 TCGCTGGCCTTGAATCAGCACATTGGCATCCTT-ATC-CTAAGCCTAATA
* * * *
972480 TCGCTAGCCCTGAATCAGCATATTGGCATCCTTATCCTAAGCCTAATG
1 TCGCTGGCCTTGAATCAGCACATTGGCATCCTTATCCTAAGCCTAATA
* * * * * *
972528 TCGCTGGCCTTAAATCAGCACATTGGCATTCTTCTCATCTTCAAGTCTATTG
1 TCGCTGGCCTTGAATCAGCACATTGGCA-TC--CTTATCCT-AAGCCTAATA
* * * * * * *
972580 TCGCTGGTCGTGAATCAGCATATTGACATTCTTCGCATCTTTAAGCCCAATA
1 TCGCTGGCCTTGAATCAGCACATTGGCATCCTT---ATC-CTAAGCCTAATA
*
972632 TCGCTGGCCTTGAATCAGCATATTGGCA
1 TCGCTGGCCTTGAATCAGCACATTGGCA
972660 CATTTATCAT
Statistics
Matches: 141, Mismatches: 30, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
48 32 0.23
49 31 0.22
50 4 0.03
51 7 0.05
52 65 0.46
53 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.33
Consensus pattern (48 bp):
TCGCTGGCCTTGAATCAGCACATTGGCATCCTTATCCTAAGCCTAATA
Found at i:972595 original size:100 final size:99
Alignment explanation
Indices: 972323--972660 Score: 282
Period size: 100 Copynumber: 3.4 Consensus size: 99
972313 GATATCTCCT
* * ** *
972323 TCTAAGCCTAATGTCGCTGGCCTTGAATTAGCACATTGGCA-C--C-T-TT-AAGTCCAATATCT
1 TCTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTCAAGTCTGATATCG
* * * * *
972382 CTAGCCTTGAATTAGCATATTGGCA-CTTTTACCACC
66 CTAGCCCTGAATCAGCATATTGACATC-CTT--CATC
* * * * *
972418 TTTAAGTCCATTGTCGCTGGCCTTGAATCTGCACATTGGCACCTTCATCTTTAAGTCTGATATCG
1 TCTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTCAAGTCTGATATCG
*
972483 CTAGCCCTGAATCAGCATATTGGCATCCTT-ATC
66 CTAGCCCTGAATCAGCATATTGACATCCTTCATC
* * *
972516 -CTAAGCCTAATGTCGCTGGCCTTAAATCAGCACATTGGCATTCTTCTCATCTTCAAGTCT-ATT
1 TCTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA--CCT-TCATCTTCAAGTCTGA-T
* * * * *
972579 GTCGCTGGTCGTGAATCAGCATATTGACATTCTTCGCATC
62 ATCGCTAGCCCTGAATCAGCATATTGACATCCTT--CATC
* * *
972619 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
1 TCTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
972661 ATTTATCATT
Statistics
Matches: 196, Mismatches: 32, Indels: 23
0.78 0.13 0.09
Matches are distributed among these distances:
95 35 0.18
96 1 0.01
97 34 0.17
98 3 0.02
99 4 0.02
100 44 0.22
101 35 0.18
102 2 0.01
103 3 0.02
104 35 0.18
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.33
Consensus pattern (99 bp):
TCTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTCAAGTCTGATATCG
CTAGCCCTGAATCAGCATATTGACATCCTTCATC
Found at i:972703 original size:61 final size:61
Alignment explanation
Indices: 972606--972747 Score: 214
Period size: 61 Copynumber: 2.3 Consensus size: 61
972596 AGCATATTGA
* *
972606 CATTCTTCGCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CATTTAT
1 CATTCTTCTCATCTTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCATC-TTTAT
* *
972667 CATTCTTCTCATCTTTAAGCCCAATATCGTTAGCCTTGAATTAGCATATTGGCATCTTTAT
1 CATTCTTCTCATCTTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCATCTTTAT
*
972728 CACTCTTCATCATCTTTAAG
1 CATTCTTC-TCATCTTTAAG
972748 TCTAGTGTTG
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
61 62 0.84
62 12 0.16
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (61 bp):
CATTCTTCTCATCTTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCATCTTTAT
Found at i:972782 original size:62 final size:61
Alignment explanation
Indices: 972609--972786 Score: 191
Period size: 61 Copynumber: 2.9 Consensus size: 61
972599 ATATTGACAT
* * * *
972609 TCTTCGCATCTTTAAGCCCAATATCGCT-GGCCTTGAATCAGCATATTGGCACATTTATCAT
1 TCTTCTCATCTTTAAGCCCAATATCG-TAAGCCTTGAATCTGCATATTGGCACATTTATCAC
*
972670 TCTTCTCATCTTTAAGCCCAATATCGTTAGCCTTGAAT-TAGCATATTGGCATC-TTTATCAC
1 TCTTCTCATCTTTAAGCCCAATATCGTAAGCCTTGAATCT-GCATATTGGCA-CATTTATCAC
* * * * * * *
972731 TCTTCATCATCTTTAAGTCTAGTGTTGTAAGCCTTGAATCTGCACACTGGCACATT
1 TCTTC-TCATCTTTAAGCCCAATATCGTAAGCCTTGAATCTGCATATTGGCACATT
972787 GCAAAACACT
Statistics
Matches: 99, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
60 1 0.01
61 58 0.59
62 39 0.39
63 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (61 bp):
TCTTCTCATCTTTAAGCCCAATATCGTAAGCCTTGAATCTGCATATTGGCACATTTATCAC
Found at i:973509 original size:13 final size:13
Alignment explanation
Indices: 973491--973515 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
973481 ATATTGCACA
973491 GTATCGATACATT
1 GTATCGATACATT
973504 GTATCGATACAT
1 GTATCGATACAT
973516 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:973643 original size:32 final size:32
Alignment explanation
Indices: 973597--973672 Score: 125
Period size: 32 Copynumber: 2.4 Consensus size: 32
973587 CTTAACTATT
*
973597 TGTATCGATACACATAAGATATATCGATACAA
1 TGTATCGATACACATAAGATATATCCATACAA
* *
973629 TGTATCGATGCACATAAGATGTATCCATACAA
1 TGTATCGATACACATAAGATATATCCATACAA
973661 TGTATCGATACA
1 TGTATCGATACA
973673 TCCCAAAATG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.29
Consensus pattern (32 bp):
TGTATCGATACACATAAGATATATCCATACAA
Found at i:973652 original size:19 final size:18
Alignment explanation
Indices: 973597--973653 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 18
973587 CTTAACTATT
973597 TGTATCGATACACATAAGA
1 TGTATCGAT-CACATAAGA
*
973616 TATATCGAT-AC---A-A
1 TGTATCGATCACATAAGA
973629 TGTATCGATGCACATAAGA
1 TGTATCGAT-CACATAAGA
973648 TGTATC
1 TGTATC
973654 CATACAATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
13 9 0.30
14 1 0.03
15 2 0.07
17 2 0.07
18 1 0.03
19 15 0.50
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (18 bp):
TGTATCGATCACATAAGA
Found at i:983027 original size:40 final size:40
Alignment explanation
Indices: 982974--983061 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 40
982964 TCAAAATGAC
* * *
982974 AAAAAAAGTCAAAAGCAAAAGCACAAAAAATGAA-AAGAA
1 AAAAAAAGTCAAAAGCAAAAGAAAAAAAAAAGAACAAGAA
*
983013 AAAAAAAGTGCAAAAGCAAAATAAAAAAAAAAGAACAAGAA
1 AAAAAAAGT-CAAAAGCAAAAGAAAAAAAAAAGAACAAGAA
983054 AAATAAAA
1 AAA-AAAA
983062 AACGAGGACA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
39 9 0.21
40 21 0.50
41 8 0.19
42 4 0.10
ACGTcount: A:0.75, C:0.08, G:0.11, T:0.06
Consensus pattern (40 bp):
AAAAAAAGTCAAAAGCAAAAGAAAAAAAAAAGAACAAGAA
Found at i:983329 original size:12 final size:12
Alignment explanation
Indices: 983308--983343 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
983298 CCAATCCTAA
983308 AAAAAAAAAAAC
1 AAAAAAAAAAAC
*
983320 AAAAACAAAAAC
1 AAAAAAAAAAAC
983332 AAAAAAAAAAAC
1 AAAAAAAAAAAC
983344 CCTTTTCACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:984430 original size:27 final size:27
Alignment explanation
Indices: 984393--984802 Score: 685
Period size: 27 Copynumber: 15.0 Consensus size: 27
984383 GTGGCATTTT
* * *
984393 CTTTTAAAGTCCACAACTCTGTGACATC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* *
984421 TTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
984448 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
984476 CTTTTTAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
984503 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
984530 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
984557 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
984584 CTTTTTAAGTCCACAACTCTGTGGCACC
1 C-TTTTAAGTCCACAACTCCGTGGCACC
*
984612 CTTTTTAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
984639 CTTTTTAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
984666 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
984693 CTTTTAAGTCCACAACTCCGTGGCATCC
1 CTTTTAAGTCCACAACTCCGTGGCA-CC
*
984721 CTTTTAAGACCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
984748 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
984775 CTTTTAAGTCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
984802 C
1 C
984803 ATTTCAAAGC
Statistics
Matches: 365, Mismatches: 14, Indels: 7
0.95 0.04 0.02
Matches are distributed among these distances:
27 283 0.78
28 82 0.22
ACGTcount: A:0.22, C:0.35, G:0.14, T:0.28
Consensus pattern (27 bp):
CTTTTAAGTCCACAACTCCGTGGCACC
Found at i:984595 original size:109 final size:109
Alignment explanation
Indices: 984393--984802 Score: 689
Period size: 109 Copynumber: 3.8 Consensus size: 109
984383 GTGGCATTTT
* * * * *
984393 CTTTTAAAGTCCACAACTCTGTGACATCTTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAGT
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGT
984458 CCACAACTCCGTGGCACCCTTTTT-AGTCCACAACTCCGTGGCACC
64 CCACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
984503 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
*
984568 ACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCTGTGGCACC
66 ACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
* *
984612 CTTTTTAGTCCACAACTCCGTGGCACCCTTTTTAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
984677 ACAACTCCGTGGCACCC-TTTTAAGTCCACAACTCCGTGGCATCC
66 ACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCA-CC
*
984721 CTTTTAAGACCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
*
984786 ACAACTCTGTGGCACCC
66 ACAACTCCGTGGCACCC
984803 ATTTCAAAGC
Statistics
Matches: 285, Mismatches: 13, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
108 51 0.18
109 229 0.80
110 5 0.02
ACGTcount: A:0.22, C:0.35, G:0.14, T:0.28
Consensus pattern (109 bp):
CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
ACAACTCCGTGGCACCCTTTTTAAGTCCACAACTCCGTGGCACC
Found at i:984643 original size:136 final size:136
Alignment explanation
Indices: 984393--984802 Score: 696
Period size: 136 Copynumber: 3.0 Consensus size: 136
984383 GTGGCATTTT
* * * * * *
984393 CTTTTAAAGTCCACAACTCTGTGACATCTTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAGT
1 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGT
984458 CCACAACTCCGTGGCACCCTTTTTAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCG
65 CCACAACTCCGTGGCACCCTTTTTAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCG
984523 TGGCACC
130 TGGCACC
984530 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTC
* *
984595 CACAACTCTGTGGCACCCTTTTTAGTCCACAACTCCGTGGCACCCTTTTTAGTCCACAACTCCGT
66 CACAACTCCGTGGCACCCTTTTTAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGT
984660 GGCACC
131 GGCACC
*
984666 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCC-TTTTAAGA
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTTTTAAGT
* *
984730 CCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTG
65 CCACAACTCCGTGGCACCCTTTTTAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCG
984795 TGGCACC
130 TGGCACC
984802 C
1 C
984803 ATTTCAAAGC
Statistics
Matches: 259, Mismatches: 13, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
136 251 0.97
137 8 0.03
ACGTcount: A:0.22, C:0.35, G:0.14, T:0.28
Consensus pattern (136 bp):
CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTTAAGTC
CACAACTCCGTGGCACCCTTTTTAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGT
GGCACC
Found at i:985312 original size:32 final size:32
Alignment explanation
Indices: 984785--985295 Score: 907
Period size: 32 Copynumber: 16.0 Consensus size: 32
984775 CTTTTAAGTC
* *
984785 CACAACTCTGTGGC-ACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
984816 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
984848 CACAAGTCGGTGTCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
984880 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
984912 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
984944 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
984976 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
985008 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
985040 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
985072 CATAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
985104 AACAAGTCGGTCGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
985136 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
985168 CACAAGTCGGTGGTAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
985200 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
985232 CACAAGTCGGTGGCAACTCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
985264 CACAAGTCGGTGGCAACCCATTTAAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
985296 TGCAAGTTAG
Statistics
Matches: 458, Mismatches: 21, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
31 12 0.03
32 446 0.97
ACGTcount: A:0.32, C:0.34, G:0.18, T:0.16
Consensus pattern (32 bp):
CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
Found at i:985404 original size:45 final size:46
Alignment explanation
Indices: 985353--985474 Score: 129
Period size: 49 Copynumber: 2.6 Consensus size: 46
985343 AAGTCCGATA
985353 TCGCTGGCCTTGAATCAGCATATTGGCACCTTT-CTAAGCCCAATG
1 TCGCTGGCCTTGAATCAGCATATTGGCACCTTTCCTAAGCCCAATG
* * * * *
985398 TCGCTGGCCTTGAGTCAGCACATTGGTCCACTTTTCCCTTAGTCCAATG
1 TCGCTGGCCTTGAATCAGCATATTGG--CACCTTT-CCTAAGCCCAATG
* * **
985447 TTGCTGGTCTTGAATTGGCATATTGGCA
1 TCGCTGGCCTTGAATCAGCATATTGGCA
985475 ATCCTCTCAT
Statistics
Matches: 62, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
45 24 0.39
47 8 0.13
49 30 0.48
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (46 bp):
TCGCTGGCCTTGAATCAGCATATTGGCACCTTTCCTAAGCCCAATG
Found at i:985896 original size:20 final size:19
Alignment explanation
Indices: 985850--985926 Score: 73
Period size: 20 Copynumber: 3.9 Consensus size: 19
985840 TCATACCCTG
* *
985850 ATGTATCGATGCATTTTTCA
1 ATGTATCGATACA-TTATCA
* *
985870 ATATATCGATACATGTATGA
1 ATGTATCGATACAT-TATCA
* *
985890 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTAT-CA
985910 ATGTATCGATACATTAT
1 ATGTATCGATACATTAT
985927 GTCTTTTTAC
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
19 3 0.07
20 42 0.93
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40
Consensus pattern (19 bp):
ATGTATCGATACATTATCA
Found at i:985917 original size:40 final size:39
Alignment explanation
Indices: 985850--985927 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
985840 TCATACCCTG
* * *
985850 ATGTATCGATGCATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
985890 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
985928 TCTTTTTACC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:986867 original size:24 final size:24
Alignment explanation
Indices: 986835--986891 Score: 100
Period size: 22 Copynumber: 2.5 Consensus size: 24
986825 AGCCTTTGAC
986835 CATGCATTTTTTTTTATTATGTTT
1 CATGCATTTTTTTTTATTATGTTT
986859 CATGCA--TTTTTTTATTATGTTT
1 CATGCATTTTTTTTTATTATGTTT
986881 CATGCATTTTT
1 CATGCATTTTT
986892 AACATGTCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
22 22 0.71
24 9 0.29
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.63
Consensus pattern (24 bp):
CATGCATTTTTTTTTATTATGTTT
Found at i:986898 original size:20 final size:21
Alignment explanation
Indices: 986844--986898 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
986834 CCATGCATTT
**
986844 TTTTTTATTATGTTTCATGCA
1 TTTTTTAACATGTTTCATGCA
**
986865 TTTTTTTATTATGTTTCATGCA
1 -TTTTTTAACATGTTTCATGCA
986887 -TTTTTAACATGT
1 TTTTTTAACATGT
986899 CCAGCATCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 10 0.32
22 21 0.68
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.62
Consensus pattern (21 bp):
TTTTTTAACATGTTTCATGCA
Found at i:993432 original size:19 final size:19
Alignment explanation
Indices: 993410--993449 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
993400 ATAAATAAAT
*
993410 TTAA-ATTTATGTTAAGTAA
1 TTAACATTTAT-TTAAATAA
993429 TTAACATTTATTTAAATAA
1 TTAACATTTATTTAAATAA
993448 TT
1 TT
993450 TTTATGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (19 bp):
TTAACATTTATTTAAATAA
Found at i:993551 original size:35 final size:35
Alignment explanation
Indices: 993511--993594 Score: 93
Period size: 35 Copynumber: 2.4 Consensus size: 35
993501 ACGAAAAATT
993511 ATATAA-AATATAAAATAAAATAAAATACGATATAA
1 ATATAATAATATAAAAT-AAATAAAATACGATATAA
* * * *
993546 ATATAATATTATAAAATAATTAAAATATGATAT-G
1 ATATAATAATATAAAATAAATAAAATACGATATAA
993580 ATATTAAT-ATATAAA
1 ATA-TAATAATATAAA
993595 TATATGAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
34 9 0.21
35 24 0.57
36 9 0.21
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (35 bp):
ATATAATAATATAAAATAAATAAAATACGATATAA
Found at i:996825 original size:23 final size:23
Alignment explanation
Indices: 996791--996842 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
996781 TAAATATTTT
*
996791 TAAA-ATTATTTTTAAATAA-AAG
1 TAAATATTATTTTTAAA-AATAAA
996813 TAAATATTATTTTTAAAAATAAA
1 TAAATATTATTTTTAAAAATAAA
996836 TAAATAT
1 TAAATAT
996843 AAAATTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 6 0.22
23 21 0.78
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (23 bp):
TAAATATTATTTTTAAAAATAAA
Found at i:1001981 original size:13 final size:13
Alignment explanation
Indices: 1001963--1001987 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1001953 ACAAAGCAAT
1001963 ATGTATCGATACA
1 ATGTATCGATACA
1001976 ATGTATCGATAC
1 ATGTATCGATAC
1001988 TTAGCAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1001986 original size:33 final size:33
Alignment explanation
Indices: 1001944--1002008 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
1001934 AATTCCTTAG
1001944 TGTATCGATACAAAGCAATATGTATCGATACAA
1 TGTATCGATACAAAGCAATATGTATCGATACAA
** * *
1001977 TGTATCGATACTTAGCAATTTGTATTGATACA
1 TGTATCGATACAAAGCAATATGTATCGATACA
1002009 TCTGGGTGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (33 bp):
TGTATCGATACAAAGCAATATGTATCGATACAA
Found at i:1002728 original size:26 final size:27
Alignment explanation
Indices: 1002669--1002730 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 27
1002659 TGTTATAAAG
*
1002669 CAATTTTATACAATTTCTCCAATTTCT
1 CAATTTTATAAAATTTCTCCAATTTCT
** *
1002696 C-CCTTTATAAAATTTCT-CTATTTCT
1 CAATTTTATAAAATTTCTCCAATTTCT
1002721 CAATTTTATA
1 CAATTTTATA
1002731 CAATACTTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
25 8 0.29
26 19 0.68
27 1 0.04
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (27 bp):
CAATTTTATAAAATTTCTCCAATTTCT
Found at i:1002776 original size:52 final size:54
Alignment explanation
Indices: 1002711--1002829 Score: 127
Period size: 60 Copynumber: 2.1 Consensus size: 54
1002701 TATAAAATTT
*
1002711 CTCTATTTCTCAA-T-TTTAT-ACAATACTTTATTTCTCTTTTTAAGCGTTCTCC
1 CTCT-TTTCTCAATTCTTTATAACAATACTTTATTTCTCTTTTTAAACGTTCTCC
* *
1002763 TTCTTTTCTTCAATTTCTCCCTTTATAACAATTCTTTATTTCTCTTTTTAAACGTTCTCC
1 CTCTTTTC-TCAA--T-T--CTTTATAACAATACTTTATTTCTCTTTTTAAACGTTCTCC
1002823 CTCTTTT
1 CTCTTTT
1002830 TGATAAATTA
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
51 4 0.07
52 7 0.13
56 1 0.02
59 5 0.09
60 37 0.69
ACGTcount: A:0.18, C:0.24, G:0.03, T:0.55
Consensus pattern (54 bp):
CTCTTTTCTCAATTCTTTATAACAATACTTTATTTCTCTTTTTAAACGTTCTCC
Found at i:1003695 original size:13 final size:13
Alignment explanation
Indices: 1003677--1003702 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1003667 CAATTTTTTG
1003677 TGTATCGATACAT
1 TGTATCGATACAT
1003690 TGTATCGATACAT
1 TGTATCGATACAT
1003703 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1003767 original size:21 final size:20
Alignment explanation
Indices: 1003741--1003817 Score: 91
Period size: 21 Copynumber: 3.8 Consensus size: 20
1003731 CTGCCAAGAA
1003741 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACAT-TTTTTT
*****
1003762 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTTTTTT
1003782 ATGTATCGATACATTTTTTT
1 ATGTATCGATACATTTTTTT
1003802 CATGTATCGATACATT
1 -ATGTATCGATACATT
1003818 GCAACATGTA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 16 0.36
21 29 0.64
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTTT
Found at i:1003787 original size:20 final size:20
Alignment explanation
Indices: 1003762--1003834 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1003752 CATCTTTTTT
1003762 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
1003782 ATGTATCGATACATTTTTTTC
1 ATGTATCGATACA-TTGCAAC
1003803 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
1003823 ATGTATCGATAC
1 ATGTATCGATAC
1003835 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:1003801 original size:41 final size:41
Alignment explanation
Indices: 1003741--1003834 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
1003731 CTGCCAAGAA
*
1003741 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
*
1003782 ATGTATCGATACATTTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1003823 ATGTATCGATAC
1 ATGTATCGATAC
1003835 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:1004438 original size:48 final size:48
Alignment explanation
Indices: 1004386--1004481 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
1004376 AAATTTTACG
*
1004386 AATTTGTACATTCTCCCCCTTATTAAGGTAATTCACGCATTCTCTCCT
1 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
1004434 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
1 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
1004482 TTATCTCCCC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.24, C:0.29, G:0.08, T:0.39
Consensus pattern (48 bp):
AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
Found at i:1006339 original size:13 final size:13
Alignment explanation
Indices: 1006321--1006359 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1006311 ATAATCACCC
*
1006321 TGTATCGATACAG
1 TGTATCGATACAA
1006334 TGTATCGATACAA
1 TGTATCGATACAA
1006347 TGTATCGATACAA
1 TGTATCGATACAA
1006360 GGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1008458 original size:15 final size:15
Alignment explanation
Indices: 1008438--1008468 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1008428 ATTTCGTTTG
*
1008438 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1008453 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1008468 G
1 G
1008469 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1012548 original size:13 final size:13
Alignment explanation
Indices: 1012530--1012555 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1012520 CAATTTTTTG
1012530 TGTATCGATACAT
1 TGTATCGATACAT
1012543 TGTATCGATACAT
1 TGTATCGATACAT
1012556 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1012640 original size:20 final size:20
Alignment explanation
Indices: 1012615--1012688 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
1012605 CATCTTTTTT
*
1012615 ATGTATCAATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
1012635 ATGTATCGATACATTTTTTTTC
1 ATGTATCGATACA--TTGCAAC
1012657 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
1012677 ATGTATCGATAC
1 ATGTATCGATAC
1012689 TTTGAATTGT
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
20 27 0.63
22 16 0.37
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:1012654 original size:41 final size:42
Alignment explanation
Indices: 1012594--1012688 Score: 165
Period size: 42 Copynumber: 2.3 Consensus size: 42
1012584 CTGCCAAGAA
1012594 ATGTATCGATACATCTTTTTT-ATGTATCAATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCAATACATTGCAAC
* *
1012635 ATGTATCGATACATTTTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCAATACATTGCAAC
1012677 ATGTATCGATAC
1 ATGTATCGATAC
1012689 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 20 0.39
42 31 0.61
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.41
Consensus pattern (42 bp):
ATGTATCGATACATCTTTTTTCATGTATCAATACATTGCAAC
Found at i:1014597 original size:21 final size:20
Alignment explanation
Indices: 1014572--1014622 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
1014562 GGAAAAGAAG
*
1014572 GAATTTGATGTGTTTTTGAA
1 GAATTTGATGTGTATTTGAA
* *
1014592 GAAATTCGAAGTGTATTTGAA
1 G-AATTTGATGTGTATTTGAA
1014613 GAATTTGATG
1 GAATTTGATG
1014623 ATTGAAAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.31, C:0.02, G:0.25, T:0.41
Consensus pattern (20 bp):
GAATTTGATGTGTATTTGAA
Done.