genome.fa.s1950.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1950
Parameters: 2 7 7 80 10 50 1000
Length:  25841

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34--73	21	1.9	21	85	10	55	15	10	30	45	1.78
75--148	32	2.3	33	81	6	89	20	10	22	45	1.82
632--669	15	2.5	15	86	0	58	60	10	5	23	1.50
967--992	10	2.6	10	100	0	52	57	0	0	42	0.98
1039--1069	13	2.3	14	94	5	55	54	0	0	45	0.99
1033--1070	14	2.7	14	80	15	51	52	0	0	47	1.00
1511--1551	3	13.7	3	100	0	82	68	0	0	31	0.90
3426--3451	1	26.0	1	100	0	52	100	0	0	0	0.00
3866--3911	23	2.0	23	86	0	65	50	0	2	47	1.13
6349--6379	15	2.0	16	93	6	55	32	25	0	41	1.56
7256--7459	58	3.5	58	73	7	182	44	15	10	29	1.80
8764--10002	617	2.0	617	88	1	1865	36	12	13	36	1.83
10559--10611	19	2.7	20	82	2	72	28	16	16	37	1.91
12276--12316	3	13.7	3	84	0	55	41	0	31	26	1.56
15354--15383	13	2.3	13	100	0	60	36	13	16	33	1.88
15428--15483	19	2.9	19	91	2	94	35	14	19	30	1.91
15468--15494	13	2.1	13	100	0	54	40	14	14	29	1.86
22483--22513	15	2.1	15	93	0	53	29	25	0	45	1.54
24180--24311	19	6.8	20	90	4	216	36	13	19	30	1.91
24180--24330	78	1.9	78	92	5	252	37	13	18	29	1.90
24180--24311	39	3.4	39	100	0	264	36	13	19	30	1.91
24180--24349	59	2.9	59	84	5	166	36	14	18	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25641--25751	52	2.2	48	87	9	152	34	13	19	32	1.91

Tables:   1

The End!